353 results on '"Silica column"'
Search Results
2. DNA Extraction with TRIzol Reagent Using a Silica Column
- Author
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Yang, Bo-han, Liu, Bao-shan, and Chen, Ze-liang
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- 2021
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3. Molecular Techniques in Hematopathology
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Boyanton, Bobby L., Jr, Rushton, Jennifer R., and Crisan, Domnita, editor
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- 2011
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4. Enriching β-carotene from fatty acid esters mixture of palm oil using supercritical CO2 in the silica-packed column.
- Author
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Iftikhar, null, Tan, Huijun, and Zhao, Yaping
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FATTY acid esters ,PALM oil ,CAROTENES - Abstract
A green approach of using supercritical CO 2 in a silica-packed column via adsorption and desorption steps has been developed to enrich β-carotene in the 10% β-carotene concentrate made from crude palm oil. In the adsorption stage, the yield of the β-carotene poor fraction with the content of 3% was 82.2% when the pressure, temperature, CO 2 flow rate and the time were 25 MPa, 60 ℃, 3 kg/h, and 180 min, respectively. The rich β-carotene fraction adsorbed in the column was thoroughly extracted out by supercritical CO 2 when the pressure, temperature, flow rate and time were 35 MPa, 70 ℃, 3 kg/h, and 120 min, respectively, in which the β-carotene content reached 27% and the yield reached 22.3%. This two-step process is an efficient way to prepare natural β-carotene with high content and has potential applications in the concentration of value-added components. [ABSTRACT FROM AUTHOR]
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- 2018
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5. PCR based assay for the detection of cow milk adulteration in buffalo milk.
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Hazara, Tanmay, Sharma, Vivek, Sharma, Rekha, and Arora, Sumit
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ADULTERATIONS , *DAIRY products , *RAW milk , *MILK contamination , *MILK yield , *COMPOSITION of milk , *POLYMERASE chain reaction - Abstract
It is very common in India that with low priced cow milk adulterated high priced buffalo milk. Various techniques are available in market to identify the origin of milk but all these techniques have their own limitations. Thus, DNA based technologies are preferred now a days to identify the origin of food products from animal sources due to high sensitivity and specificity. Currently a PCR based method was developed to identify cow milk in raw buffalo milk. DNA was isolated from milk by DNeasy Mericon food kit (Quiagen,USA) which resulted in DNA of requisite quality for downstream applications. A bovine specific primer targeting D-loop (displacement) of mt- DNA (mitochondrial) was selected and standardized to amplify cow DNA. Specificity of primer was tested across the species in the genomic DNA isolated from both milk and blood. The protocol can be sensitive to detect upto 5% level of cow milk in the buffalo milk. Designed protocol was efficient, robust and sensitive and could be used as a platform test in routine quality analysis laboratory. Hence, it could be a great alternative for other protein based methods to identify cow milk in buffalo milk. [ABSTRACT FROM AUTHOR]
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- 2018
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6. Copper(II) Acetate-Induced Oxidation of Hydrazones to Diazo Compounds under Flow Conditions Followed by Dirhodium-Catalyzed Enantioselective Cyclopropanation Reactions
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Huw M. L. Davies, Taylor A Hatridge, Bo Wei, and Christopher W. Jones
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chemistry.chemical_classification ,Copper(II) acetate ,Tandem ,Cyclopropanation ,Organic Chemistry ,Enantioselective synthesis ,Hydrazone ,Silica column ,Biochemistry ,Medicinal chemistry ,Catalysis ,chemistry.chemical_compound ,chemistry ,Diazo ,Physical and Theoretical Chemistry - Abstract
A tandem system comprising in-line diazo compound synthesis and downstream consumption in a rhodium-catalyzed cyclopropanation reaction has been developed. Passing hydrazone through a silica column absorbed with Cu(OAc)2-H2O/N,N-dimethylaminopyridine oxidized the hydrazone to generate an aryldiazoacetate in flow. The crude aryldiazoacetate elutes from this column directly into a downstream cyclopropanation reaction, catalyzed by the chiral dirhodium tetracarboxylates, Rh2(R-p-Ph-TPCP)4 and Rh2(R-PTAD)4. This convenient flow to batch method was applied to the synthesis of a range of 1,2-diarylcyclopropane-1-carboxylates in high yields and with high levels of enantioselectivity.
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- 2021
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7. Antibacterial Potential of Pomegranate Peel Extracts on Escherichia coli Isolated From Benha Hospital in Egypt
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Hadeer Y. Abdel-Aziz, M.M. Hazaa, El-Esawi, Mervat G. Hassan, and S.H. Abdel-Aziz
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Aqueous extract ,genetic structures ,Chemistry ,Extraction (chemistry) ,Silica column ,General Medicine ,Antibacterial effect ,medicine.disease_cause ,Antimicrobial ,eye diseases ,medicine ,Food science ,Gas chromatography ,General hospital ,Escherichia coli - Abstract
Introduction. Pomegranate is an old fruit which has many antimicrobial compounds. Impact of pomegranate peel extracts on Escherichia coli clinical isolate from Benha general hospital was investigated in this study. Material and Methods: pomegranate peel extraction was primed and GC/MS chromatogram analysis was carried out using the GC Agilent Technologies gas chromatography fitted with HP-5 fused silica column (25mm × 0.25mm, film thickness of 0.25 µm) and interfaced to the flame-ionization detector (FID). The antibacterial potential of Pomegranate peel extractions against E.coli sample was done using well diffusion method. Results: According to (GC/MS) technique, methanol and aqueous extracts of pomegranate peel have inhibitory effects on E. coli isolate. The minimum inhibition concentrations (MICs) of methanolic and aqueous extracts were 100 and 60 mg/L, respectively. In this study , the MICs values of Aqueous extract of pomegranate peel were higher than of methanolic extract of pomegranate peel (P
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- 2021
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8. Type and Potential Sources of Polycyclic Aromatic Hydrocarbons (PAHs) in Coastal Area of Tarakan City, North Borneo, Indonesia
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Ratno Achyani, Dietriech G. Bengen, Tri Prartono, Abdullah Hisam Omar, and Etty Riani
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geography ,geography.geographical_feature_category ,Ecology ,Brackish water ,pahs ,brackish pond ,QH301-705.5 ,river ,Silica column ,Sediment ,Estuary ,GC1-1581 ,Aquatic Science ,Oceanography ,coastal area ,Environmental chemistry ,distribution ,Environmental science ,Seawater ,Biology (General) - Abstract
PAHs are mutagenic and carcinogenic agents that influence the coastal water of Tarakan City. This study aims to determine the concentration, type, and distribution of PAHs in waters and sediments of rivers, seawater, and brackish ponds, and their potential sources. Fourteen samples of water and sediment from selected stations obtained 14 types of PAHs priority (USEPA). Analysis using GC-MS Type Thermo Trace 1310 single quadrupole Mass Spectrometer, using Coulum melting silica column (coulumn fused silica) DB5 MS with a length of 30 m, a diameter of 0.32 mm inline . The concentration in sediments at river locations ranges from 0.72-352.84, between 1.23-606.74 in the sea, and brackish ponds 0.08-2858.88 ng . g -1 . O n the waters ranged from 42.46-160.25 µg . L -1 , in the sea 7.95-167.55 µg . L -1 and ponds 7.63-151.60 µg . L -1 . The concentration level in rivers and seas is small and in the ponds is small-very high. The concentration on water at the river site was observed to increase from upstream to downstream. Meanwhile in sediment was higher in the upstream decreased towards the middle of river and increased in downstream/estuary area. The concentration in the Tarakan coastal environment signifies the potential hazards to the environment . Components Nap, Fla, Pyr, Chr, and BaP are types that are often identified. Furthermore, two, four and five rings of PAHs were shown to dominate in water and sediment, with the major rings present in both river and brackish pond. The PAHs were both petrogenic and pyrolytic sources from land base sources that were possibly derived from the Pamusian river.
- Published
- 2021
9. Application of Column Chromatography for Accurate Determination of the Carbon Isotopic Compositions of n-alkanes in Diverse Environmental Samples
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Jung-Hyun Kim, Dong-Hun Lee, and Kyung-Hoon Shin
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chemistry.chemical_classification ,N alkanes ,Column chromatography ,Chromatography ,chemistry ,Elution ,chemistry.chemical_element ,Silica column ,Organic matter ,Oceanography ,Mass spectrometry ,Carbon ,Isotope analysis - Abstract
The carbon isotopic compositions (δ13C) of n-alkanes in various environmental samples have been previously proposed as suitable fingerprints for assessing the origin of organic matter (OM) in diverse environmental systems. However, with respect to using gas chromatography–combustion–isotope ratio mass spectrometry for the carbon isotopic analysis of n-alkanes, analytical uncertainty may often be caused by the co-elution of interfering unsaturated compounds (e.g., aromatic and branched compounds). Hence, we propose a simple but reliable method for purification that uses column chromatography. The performance of two different solid stationary phases (i.e., aluminum oxide and Ag+-impregnated silica) was compared in terms of their capacity to eliminate unsaturated compounds from total hydrocarbons and thus increase the precision of δ13C measurements. Compared to the use of an activated aluminum oxide column, elution from an Ag+-impregnated silica column allows more effective isolation of individual n-alkanes, which results in more precise δ13C measurements for diverse environmental samples. Thus, Ag+-impregnated silica column separation can be effective as a routine experimental technique for increasing the accuracy of the δ13C values for n-alkanes in OM, which includes a large proportion of unsaturated compounds.
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- 2021
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10. A rapid silica spin column-based method of RNA extraction from fruit trees for RT-PCR detection of viruses.
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Yang, Fan, Wang, Guoping, Xu, Wenxing, and Hong, Ni
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NUCLEIC acid isolation methods , *PLANT viruses , *POLYSACCHARIDES , *POLYPHENOLS , *MEXICAN lime - Abstract
Efficient recovery of high quality RNA is very important for successful RT-PCR detection of plant RNA viruses. High levels of polyphenols and polysaccharides in plant tissues can irreversibly bind to and/or co-precipitate with RNA, which influences RNA isolation. In this study, a silica spin column-based RNA isolation method was developed by using commercially available silica columns combined with the application of a tissue lysis solution, and binding and washing buffers with high concentration guanidinium thiocyanate (GuSCN, 50% w/v), which helps remove plant proteins, polysaccharides and polyphenolic compounds. The method was successfully used to extract high quality RNA from citrus ( Citrus aurantifolia ), grapevine ( Vitis vinifera ), peach ( Prunus persica ), pear ( Pyrus spp. ), taro ( Colocosia esculenta ) and tobacco ( Nicotiana benthamiana ) samples. The method was comparable to conventional CTAB method in RNA isolation efficiency, but it was more sample-adaptable and cost-effective than commercial kits. High quality RNA isolated using silica spin column-based method was successfully used for the RT-PCR and/or multiplex RT-PCR amplification of woody fruit tree viruses and a viroid. The study provided a useful tool for the detection and characterization of plant viruses. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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11. Occurrence and distribution of estrogenic chemicals in river waters of Malaysia
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Risky Ayu Kristanti, Tasnia Hassan Nazifa, Tony Hadibarata, Michihiko Ike, and Masashi Kuroda
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Pollutant ,030506 rehabilitation ,geography ,geography.geographical_feature_category ,business.industry ,Health, Toxicology and Mutagenesis ,Distribution (economics) ,Water supply ,Silica column ,Estuary ,010501 environmental sciences ,Pesticide ,Toxicology ,01 natural sciences ,River water ,03 medical and health sciences ,Environmental chemistry ,Environmental science ,0305 other medical science ,business ,Surface water ,0105 earth and related environmental sciences - Abstract
This study investigated the occurrence of eight endocrine-disrupting compounds (EDCs) in river water across five major regions in Malaysia, which are recognized as emerging micropollutants in the environment. The water samples were collected from surface water of Klang River, Pahang River, Kuantan River, Kelantan River and Terengganu River from Malaysia. The samples were extracted by liquid–liquid extraction using hexane and ethyl acetate and loaded on silica column for column chromatography. Gas chromatography–flame ionization detector was used to determine the concentration of the target compounds. The maximum concentration of E1, E2, E3, EE2, 1,2,4-triazole, MP, 3,4,4-trichlorocarbanilide and BPA detected is 26.5 ng/L, 15.5 ng/L, 3.6 μg/L, 68.8 ng/L, 6.5 ng/L, 5.75 ng/L, 392.5 ng/L and 37 μg/L, respectively. The high discharge of various emerging organic pollutants in the Klang River estuary ecosystem was caused by heavy industrial, plantation, residential and commercial activities from urbanized and populated cities. Overall, the occurrences show a higher concentration of EDCs when compared to developed countries. Other rivers such as Kuantan, Terengganu, Pahang and Kelantan are known as the major sources of water supply for domestic, industrial and agricultural purposes. Eight endocrine-disrupting chemicals were detected and estimated in five rivers of Malaysia. These target compounds are widely present in various rivers in the range of ND to 37 μg/L. The difference of occurrence of EDCs in these selected sampling sites reflects the distinct usage patterns of various chemicals, pesticide, cosmetic products, drugs all over Malaysia. The presence of BPA, E1 and E3 was observed to be a major contributor of endocrine disruptors.
- Published
- 2020
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12. ANALYTICAL METHOD DEVELOPMENT FOR SIMULTANEOUS ESTIMATION OF METHYL SALICYLATE, MENTHOL, THYMOL AND CAMPHOR IN AN OINTMENT AND ITS VALIDATION BY GAS CHROMATOGRAPHY.
- Author
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Bachute, Madhusudan T. and Shanbhag, S. V.
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SALICYLATES , *GAS chromatography , *ETHYLENE glycol - Abstract
A simple, precise and fast Gas Chromatographic method has been developed first time for the simultaneous determination of Methyl Salicylate, Menthol, Thymol and Camphor in an ointment formulation. Chromatographic separations of the four drugs were performed on fused silica column of length 30 meters, diameter 0.53mm with ethylene glycol film thickness 1μm as stationary phase. Nitrogen was flown through the column as carrier gas at a flow rate of 5.0mL/min. The initial oven temperature was 120°C (5 min) and raised at the rate of 15°C per minute to final temperature 200°C(3min.). Detector and injection temperatures were fixed at 270°C and 230°C respectively. The injection volume was 1 μl with run time 20 minutes. The linearity of Methyl Salicylate, Menthol, Thymol and Camphor were in the range of 0.1-0.15 mg/ml, 0.1-0.15 mg/ml, 0.02-0.03 mg/ml and 0.2-0.3 mg/ml respectively. The recovery was calculated by standard addition method and the average recovery was found to be 100.629%, 100.417%, 100.086% and 100.045% for Methyl Salicylate, Menthol, Thymol and Camphor respectively. The proposed method is simple, accurate, precise and rapid for the simultaneous estimation of these four actives. [ABSTRACT FROM AUTHOR]
- Published
- 2016
13. Separation of Copolymers by Composition through Gradient High-Performance Liquid Chromatography
- Author
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Glöckner, Gottfried and Glöckner, Gottfried
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- 1991
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14. Effect of Mobile and Stationary Phase in Polymer HPLC
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Glöckner, Gottfried and Glöckner, Gottfried
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- 1991
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15. More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens
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James M. Maley, Whitney L. E. Tsai, Margaret E. Schedl, and John E. McCormack
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0106 biological sciences ,0301 basic medicine ,Chromatography ,Museums ,Silica column ,Genomics ,DNA ,Sequence Analysis, DNA ,Biology ,010603 evolutionary biology ,01 natural sciences ,DNA extraction ,Specimen Handling ,Birds ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Genetics ,Animals ,Extraction methods ,Ecology, Evolution, Behavior and Systematics ,Biotechnology - Abstract
Next-generation sequencing has greatly expanded the utility and value of museum collections by revealing specimens as genomic resources. As the field of museum genomics grows, so does the need for extraction methods that maximize DNA yields. For avian museum specimens, the established method of extracting DNA from toe pads works well for most specimens. However, for some specimens, especially those of birds that are very small or very large, toe pads can be a poor source of DNA. In this study, we apply two DNA extraction methods (phenol-chloroform and silica column) to three different sources of DNA (toe pad, skin punch and bone) from 10 historical avian museum specimens. We show that a modified phenol-chloroform protocol yielded significantly more DNA than a silica column protocol (e.g., Qiagen DNeasy Blood & Tissue Kit) across all tissue types. However, extractions using the silica column protocol contained longer fragments on average than those using the phenol-chloroform protocol, probably as a result of loss of small fragments through the silica column. While toe pads yielded more DNA than skin punches and bone fragments, skin punches proved to be a reliable alternative source of DNA and might be especially appealing when toe pad extractions are impractical. Overall, we found that historical bird museum specimens contain substantial amounts of DNA for genomic studies under most extraction scenarios, but that a phenol-chloroform protocol consistently provides the high quantities of DNA required for most current genomic protocols.
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- 2019
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16. Polycyclic Aromatic Hydrocarbon Accumulation and Biomarker Responses in Cockles from Moroccan Mediterranean Coasts
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Hassan Er-Raioui, Ikram Chbani, Nourredine Bouayad, and Saida Bouzid
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chemistry.chemical_classification ,Gill ,Mediterranean climate ,Biomarker (petroleum) ,Ecology ,chemistry ,Environmental chemistry ,Extraction (chemistry) ,Polycyclic aromatic hydrocarbon ,Silica column ,Statistical analysis ,Gas chromatography ,Pollution - Abstract
This study aims to evaluate levels and effects of Polycyclic Aromatic Hydrocarbons (PAHs) in cockles (Acanthocardia tuberculatae) collected from two differently influenced areas in the Mediterranean Western Moroccan coasts. PAHs accumulation was studied in soft tissues using Soxhlet extraction and separation on silica column methods. The measure of those organic compounds was realized by Gas chromatography coupled to Mass spectrometer technics (GC/MS). The impact evaluation was carried out by the study of biochemical responses in gills and digestive gland using two enzymes activities: Glutathione S-Transferase (GST) and Acetylcholinesterase (AchE). The PAHs displayed significant rates of accumulation ranging from 10.12µg/g Dried Weight (DW) to 11.65µg/g (DW) respectively in Oued Laou and Martil sites. Pyrolytic and petrogenic origins were observed in both sites. Pyrolytic origin of PAHs was strongly detected in Oued Laou site while petrogenic origin was mostly detected in Martil site. Biochemical study revealed significant enzymatic response of GST and AchE in gills and digestive gland. The study showed significant biochemical response more important in Martil site than Oued Laou site traduced by GST induction and AchE inhibition. Those results seemed to be related to accumulation rates of PAHs, which was also suggested by the statistical analysis PCA.
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- 2019
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17. Chiral Monolithic Silica-Based HPLC Columns for Enantiomeric Separation and Determination: Functionalization of Chiral Selector and Recognition of Selector-Selectand Interaction
- Author
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Rasha S. Hanafi, Sergiy Kovalenko, Mufarreh Asmari, Natalia Casado, Marjan Piponski, Liliya Logoyda, Xiaoyu Wang, and Sami El Deeb
- Subjects
Materials science ,Capillary action ,Pharmaceutical Science ,monolithic silica ,chiral selector ,enantiomers ,Review ,High-performance liquid chromatography ,Analytical Chemistry ,QD241-441 ,Phase (matter) ,Drug Discovery ,Physical and Theoretical Chemistry ,Chromatography ,molecular modeling ,Organic Chemistry ,Silica column ,enantiomeric separation ,Chiral column chromatography ,enantiomeric impurity ,Surface coating ,Chemistry (miscellaneous) ,immobilization ,Molecular Medicine ,Surface modification ,Enantiomer ,chiral chromatography - Abstract
This review draws attention to the use of chiral monolithic silica HPLC columns for the enantiomeric separation and determination of chiral compounds. Properties and advantages of monolithic silica HPLC columns are also highlighted in comparison to conventional particle-packed, fused-core, and sub-2-µm HPLC columns. Nano-LC capillary monolithic silica columns as well as polymeric-based and hybrid-based monolithic columns are also demonstrated to show good enantioresolution abilities. Methods for introducing the chiral selector into the monolithic silica column in the form of mobile phase additive, by encapsulation and surface coating, or by covalent functionalization are described. The application of molecular modeling methods to elucidate the selector–selectand interaction is discussed. An application for enantiomeric impurity determination is also considered.
- Published
- 2021
18. Comparison of in-silico modelling and reversed-phase liquid chromatographic retention on an octadecyl silica column to predict skin permeability of pharmaceutical and cosmetic compounds
- Author
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Yvan Vander Heyden, Yasmine Grooten, Aleksandra Sych, Debby Mangelings, Department of Analytical Chemistry, Applied Chemometrics and Molecular Modelling, Analytical Chemistry and Pharmaceutical Technology, Pharmaceutical and Pharmacological Sciences, and Faculty of Medicine and Pharmacy
- Subjects
Chromatography, Reverse-Phase ,Aqueous solution ,Chromatography ,Chemistry ,Clinical Biochemistry ,Quantitative Structure-Activity Relationship ,Pharmaceutical Science ,Silica column ,Skin permeability ,Silicon Dioxide ,Permeability ,Analytical Chemistry ,Pharmaceutical Preparations ,Molecular descriptor ,Phase (matter) ,Test set ,Drug Discovery ,Linear regression ,Partial least squares regression ,Spectroscopy - Abstract
This study focuses on the in-silico modelling of the skin permeability using a test set of pharmaceutical and cosmetic compounds. Two sets of theoretical molecular descriptors, obtained from the E-Dragon and Vega ZZ software programs, were used in the models. Different linear regression methods, i.e. Multiple Linear Regression (MLR) and Partial Least Squares (PLS) regression, were applied for modelling and estimating the skin permeability. The best model was obtained using a stepwise MLR approach on the E-Dragon descriptor set. In a second step, the retention of the test set compounds was measured on a C18 column at two pH levels: pH 5.5 and pH 7. Different organic-modifier fractions were applied in the mobile phase to be able to extrapolate the retention factors to a log kw value, with kw the estimated retention factor in an aqueous mobile phase without organic modifier. Thereafter it was examined whether combining this chromatographic descriptor with the theoretical descriptors could improve the modelling of the skin permeability. The chromatographic descriptor often did not show an added value compared to the models containing only theoretical descriptors. Therefore, the in-silico models were preferred, and these models could be useful to predict the skin permeability of pharmaceutical and cosmetic compounds.
- Published
- 2021
19. A rapid RNA extraction method from oil palm tissues suitable for reverse transcription quantitative real-time PCR (RT-qPCR)
- Author
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Badai, Siti Suriawati, Rasid, Omar Abd, Parveez, Ghulam Kadir Ahmad, and Masani, Mat Yunus Abdul
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- 2020
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20. Silver-coated monolitic silica column for separation of benzo[a]pyrene from petroleum
- Author
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Vida Vičkačkaitė, Vilius Poškus, and Justina Rokaitė
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chemistry.chemical_compound ,Chromatography ,Benzo(a)pyrene ,Chemistry ,Silica column ,Petroleum ,General Chemistry - Abstract
Monolithic silica solid-phase extraction column has been successfully applied for the rapid fractionation and subsequent gas chromatographic analysis of benzo[a]pyrene from the diesel and oil matrix. Due to π-π electronic interactions between silver nanoparticles on the sorbent surface and aromatic analyte specific retention was achieved. It was demonstrated that only 0.2 g of the sorbent and 6 ml of the organic solvent are enough for such separation.
- Published
- 2021
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21. Molecular Techniques in Hematopathology.
- Author
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Boyanton Jr, Bobby L. and Rushton, Jennifer R.
- Abstract
The discipline of hematopathology traditionally relies upon morphologic evaluation, cytochemical stains, immunohistochemistry, flow cytometry, and karyotypic analysis to classify hematolymphoid neoplasms. Although these time-honored methods still comprise the primary diagnostic arsenal of the pathologist, the last few decades have borne witness to the widespread acceptance of molecular techniques to classify these neoplasms. No longer considered ancillary, molecular analyses have led to a greater understanding of the biological and clinical heterogeneity of hematolymphoid neoplasms, and now form the primary diagnostic criteria for many diagnoses as set forth by the World Health Organization [1]. They also provide extremely sensitive and specific methods for prognostic marker detection and minimal residual disease monitoring. These techniques have evolved rapidly over the last decade from Southern blot and hybridization assays to polymerase chain reaction and its variants to gene expression profiling and single-nucleotide polymorphism analysis, and more recently to microarray technology and whole-genome analysis. Despite technological advancements, molecular techniques are critically dependent upon the nature of nucleic acids retrieved from the specimen. Results cannot be correctly interpreted if the quantity and/or the integrity of nucleic acids are not optimal for the desired molecular application. As such, the purpose of this chapter is twofold. First, issues pertaining to specimen collection, handling and processing, and nucleic acid extraction, stability, and storage are reviewed. Second, molecular techniques commonly utilized in hematopathology are reviewed. Cytogenetics, fluorescent in situ hybridization (FISH), and microarray techniques are discussed in Chapter 2. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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22. Bulk preparation of (-)-epigallocatechin gallate-rich extract from green tea.
- Author
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Jian-Hui Ye, Na-Na Li, Jian-Liang Lu, Xin-Qiang Zheng, and Yue-Rong Liang
- Subjects
- *
EPIGALLOCATECHIN gallate , *GREEN tea , *PLANT extracts , *ETHYL acetate , *CATECHIN - Abstract
(-)-Epigallocatechin gallate (EGCg)-rich extract (EGCg >700 mg g-1) was prepared from green tea leaves through a three-stage process consisting of liquid-liquid extraction and silica column purification. Crude tea extract was dissolved in ethyl acetate. After filtration, the solution was extracted by 10 gL-1 citric acid solution twice, and then passed through silica column. The catechins compounds in the ethyl acetate eluate were back extracted to the aqueous phase, then extracted with a mixed solution of n-hexane/ethyl acetate (2/5, v/v) 3 times, concentrated, and freeze dried. 12.8 g EGCg-rich extract containing 709 mg g-1 EGCg and 965 mg g-1 total catechins was obtained from 300 g green tea leaves, with an EGCg recovery of 26.1% and a yield of 4.3%. This method was suitable for bulk preparation of EGCg-rich catechins from green tea leaves. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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23. Efficiency of DNA Isolation Methods Based on Silica Columns and Magnetic Separation Tested for the Detection of Mycobacterium Avium Subsp. Paratuberculosis in Milk and Faeces
- Author
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Marketa Husakova, Petr Kralik, Vladimir Babak, and Iva Slana
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040301 veterinary sciences ,Magnetic separation ,Paratuberculosis ,lcsh:Technology ,0403 veterinary science ,03 medical and health sciences ,F57 PCR ,medicine ,Infection transmission ,General Materials Science ,magnetic separation ,lcsh:Microscopy ,Feces ,lcsh:QC120-168.85 ,0303 health sciences ,milk ,Chromatography ,Johne’s disease ,lcsh:QH201-278.5 ,030306 microbiology ,Chemistry ,lcsh:T ,Silica column ,04 agricultural and veterinary sciences ,Isolation (microbiology) ,medicine.disease ,DNA isolation ,DNA extraction ,silica columns ,paratuberculosis ,Mycobacterium avium subsp. paratuberculosis ,lcsh:TA1-2040 ,lcsh:Descriptive and experimental mechanics ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,faeces ,lcsh:Engineering (General). Civil engineering (General) ,lcsh:TK1-9971 - Abstract
Timely and reliable detection of animals shedding Mycobacterium avium subsp. paratuberculosis (MAP) should help to effectively identify infected animals and limit infection transmission at early stages to ensure effective control of paratuberculosis. The aim of the study was to compare DNA extraction methods and evaluate isolation efficiency using milk and faecal samples artificially contaminated by MAP with a focus on modern instrumental automatic DNA isolation procedures based on magnetic separation. In parallel, an automatic and manual version of magnetic separation and two methods of faecal samples preparation were compared. Commercially available DNA isolation kits were evaluated, and the selected kits were used in a trial of automatic magnetic beads-based isolation and compared with the manual version of each kit. Detection of the single copy element F57 was performed by qPCR to quantify MAP and determine the isolation efficiency. The evaluated kits showed significant differences in DNA isolation efficiencies. The best results were observed with the silica column Blood and Tissue kit for milk and Zymo Research for faeces. The highest isolation efficiency for magnetic separation was achieved with MagMAX for both matrices. The magnetic separation and silica column isolation methods used in this study represent frequently used methods in mycobacterial diagnostics.
- Published
- 2020
24. Simultaneous quantitation of cationic disinfectants by high-performance liquid chromatography on a silica gel column using aqueous eluents
- Author
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Chau Yang Chen, An Bang Wu, Kun Shan Wu, Fu An Chen, and Ming Chung Huang
- Subjects
Pharmacology ,chemistry.chemical_compound ,Aqueous solution ,Chromatography ,chemistry ,Silica gel ,Cationic polymerization ,Silica column ,Column (database) ,High-performance liquid chromatography ,Food Science - Published
- 2020
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25. Comparison of Different Kits for SARS-CoV-2 RNA Extraction Marketed in Brazil
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Larissa Mallmann, Juliana Schons Gularte, Fagner Henrique Heldt, Ana Karolina Antunes Eisen, Fernando Rosado Spilki, Paula Rodrigues de Almeida, Juliane Deise Fleck, Karoline Schallenberger, Meriane Demoliner, Bruna Saraiva Hermann, and Alana Witt Hansen
- Subjects
Veterinary medicine ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Medicine ,Silica column ,RNA extraction ,business ,medicine.disease_cause ,Coronavirus - Abstract
December 2019 marked the begining of the greatest pandemic since Spanish Flu, the disease named Covid-19 that cause severe pneumonia. Until May 19, 2020 more than 4 million and 700 thousand cases were oficially notified with about 316 thousand deaths. Etiological agent of the disease was identified as being a new coronavirus, Severe acute respiratory syndrome-related coronavirus (SARS-CoV-2). In this study we compared four different manual methods for RNA isolation and purification for detection of SARS-CoV-2 through qRT-PCR, as well as the extraction quality itself through detection of RNAse P. Magnetic beads-based (MagMax™) and silica column-based (Biopur®) methods presented the better performances. Concerning to the mean delay in CT values when compared to MagMax™, TRIzol™, Biopur® and EasyExtract presented 0,39, 0,95 and 5,23 respectively. Agreement between positive and negative results of different methods when compared with the one with better performance MagMax™ was 94,44% for silica column-based method (Biopur®), 88,89% for phenol-chroloform-based method (TRIzol™) and 77,78% for EasyExtract. We aimed to evaluate how reliable each method is for diagnostic purposes and to propose alternatives when usual methods are not available. In this regard, magnectic beads and silica column-based methods are convenient and reliable choices and phenol-chloroform-based method could also be chosen as an alternative.
- Published
- 2020
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26. CTAB VS. COLUMN-BASED DNA EXTRACTION FROM OLD HERBARIUM MATERIAL
- Author
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Carl von Ossietzky-University Oldenburg, Dirk C. Albach, and Jannes Höpke
- Subjects
0106 biological sciences ,Herbarium ,Chromatography ,Chemistry ,Silica column ,010603 evolutionary biology ,01 natural sciences ,DNA extraction ,Column (botany) ,010606 plant biology & botany - Abstract
Herbarium specimens have become a major source of information in molecular research of biodiversity. However, getting good DNA samples from old herbarium specimens is still a challenge. The purpose of this project is to test different DNA extraction methods for old material from herbaria that often exhibit high DNA fragmentation. We compared a CTAB-based DNA extraction that is followed by a clean-up with paramagnetic beads with a modified NucleoSpin Plant II protocol, based on silica columns. Our results demonstrate that silica column-based methods have less problems with contamination by polysaccharide and polyphenolic compounds. Taking practical considerations into account, the column-based method is better especially when trying to reduce the amount of leaf tissue used since handling with a tiny pellet makes CTAB difficult.
- Published
- 2018
- Full Text
- View/download PDF
27. Silver-coated monolithic silica column for separation of trans fatty acids
- Author
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Vida Vičkačkaitė and Vilius Poškus
- Subjects
Chemistry ,010401 analytical chemistry ,Silica column ,Solid phase extraction ,010402 general chemistry ,01 natural sciences ,Silver nanoparticle ,Cis–trans isomerism ,0104 chemical sciences ,Nuclear chemistry - Published
- 2018
- Full Text
- View/download PDF
28. Determination of ten sulfonamides in honey using tetrahydrofuran Salting Out Liquid Liquid Extraction and monolithic silica column
- Author
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Rafał Banasiuk, Leszek Kadziński, and Bogdan Banecki
- Subjects
Chromatography ,010401 analytical chemistry ,Silica column ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Liquid–liquid extraction ,Salting out ,0210 nano-technology ,Tetrahydrofuran ,Food Science - Published
- 2018
- Full Text
- View/download PDF
29. Mn(II)-coordinated Fluorescent Carbon Dots: Preparation and Discrimination of Organic Solvents
- Author
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Yuru Wang, Yang Xu, Huanrong Li, Tianren Wang, and Xi Chen
- Subjects
Chemistry ,Organic Chemistry ,Doping ,chemistry.chemical_element ,Quantum yield ,Silica column ,Protonation ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Fluorescence ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,Inorganic Chemistry ,White light ,Electrical and Electronic Engineering ,Physical and Theoretical Chemistry ,0210 nano-technology ,Carbon ,Spectroscopy ,Nuclear chemistry - Abstract
Herein, we prepared a Mn(II)-coordinated carbon dots (CDs) with fluorescence and MRI (magnetic resonance imaging) bimodal properties by a one-pot solvothermal method and separated via silica column chromatography. The quantum yield of the CDs increased greatly from 2.27% to 6.75% with increase of Mn(II) doping, meanwhile the CDs exhibited a higher MR activity (7.28 mM−1s−1) than that of commercial Gd-DTPA (4.63 mM−1s−1). In addition, white light emitting CDs were obtained by mixing the different types of CDs. Notably, these CDs exhibited different fluorescence emissions in different organic solvents and could be used to discriminate organic solvents based on the polarity and protonation of the solvents.
- Published
- 2018
- Full Text
- View/download PDF
30. Influence on the pressure on the properties of chromatographic columns III. Retention volume of thiourea, hold-up volume, and compressibility of the C18-bonded layer
- Author
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Guiochon, Georges [ORNL]
- Published
- 2005
- Full Text
- View/download PDF
31. Influence of the pressure on the properties of chromatographic columns I. Measurement of the compressibility of methanol-water mixtures on a mesoporous silica adsorbent
- Author
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Guiochon, Georges [ORNL]
- Published
- 2005
- Full Text
- View/download PDF
32. HYDROPHILIC INTERACTION CHROMATOGRAPHIC DETERMINATION OF OXYTETRACYCLINE IN THE ENVIRONMENTAL WATER USING SILICA COLUMN.
- Author
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Li, Ruiping, Yuan, Qin, Zhang, Yi, Ling, Jing, and Han, Tiantian
- Subjects
- *
OXYTETRACYCLINE , *WATER analysis , *SILICA , *CHROMATOGRAPHIC analysis , *SOLID-phase analysis , *EXTRACTION (Chemistry) , *ADSORPTION (Chemistry) , *ANTIBIOTICS - Abstract
In the present study, a simple, sensitive, and rapid hydrophilic interaction chromatographic (HILIC) method with ultraviolet (UV) detection for the analysis of oxytetracycline (OTC) was developed and applied to the determination of the antibiotic in environmental waters. OTC was extracted and purified from water samples by solid-phase extraction (SPE) employing Oasis HLB cartridge and analyzed on a Kromasil silica column with the mobile phase of acetonitrile-sodium oxalate (10 mM, pH 2.5) (90:10, v/v). The analyte was detected at 365 nm, and the total analysis time was ∼7 min. Method validation was accomplished by examination of the linearity, precision, accuracy, limit of detection (LOD), and limit of quantification (LOQ). More importantly, in a linear range of 0.15-10 mg L-1, OTC had high repeatability with good peak shape and no irreversible adsorption was found. The results of this study demonstrated that bare silica column could be used in the determination of tetracycline antibiotics in HILIC mode with no peak tailing, providing a different understanding from that previously found in literature. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
33. High speed hydrophilic interaction liquid chromatographic method for simultaneous determination of selected pharmaceuticals in wastewater using a cyano-bonded silica column
- Author
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Heba Shaaban
- Subjects
Chromatography ,Environmental analysis ,Chemistry ,Hydrophilic interaction chromatography ,010401 analytical chemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Silica column ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Analytical Chemistry ,Wastewater ,Solid phase extraction ,0210 nano-technology - Abstract
In this work, a fast analytical method based on hydrophilic interaction liquid chromatographic-Ultraviolet detection (HILIC-UV) using a short narrow bore cyano-bonded silica column packed with full...
- Published
- 2018
- Full Text
- View/download PDF
34. Determination of Inorganic Anions in Seawater Samples by Ion Chromatography - Effects of Residual Silanol Groups on a Reversed-phase C18 Silica Column
- Author
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Yuuta Horioka, Kazuaki Ito, Takayoshi Yasumoto, Kengo Yamane, and Kazuhiko Takeda
- Subjects
Silanol ,chemistry.chemical_compound ,Chromatography ,Chemistry ,Phase (matter) ,Ion chromatography ,Silica column ,Seawater ,Residual ,Analytical Chemistry - Published
- 2018
- Full Text
- View/download PDF
35. Accessible silanol sites – Beneficial for the RP-HPLC separation of constitutional and diastereomeric azaspirovesamicol isomers
- Author
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Wenzel, Barbara, Fischer, Steffen, Brust, Peter, and Steinbach, Jörg
- Subjects
- *
CATIONS , *ION exchange (Chemistry) , *SILICA , *METHANOL , *CROSSLINKING (Polymerization) , *ALCOHOLS (Chemical class) , *HIGH performance liquid chromatography - Abstract
Abstract: Different RP-HPLC columns (phenyl, conventional ODS, cross-linked C18 and special end-capped C8 and C18 phases) were used to investigate the separation of four basic ionizable isomers. Using ACN/20mM NH4OAc aq., a separation was observed exclusively on RP columns with higher silanol activity at unusual high ACN concentration, indicating cation-exchange as main retention mechanism. Using MeOH/20mM NH4OAc aq., another separation at low MeOH concentrations was observed on both, RP columns with higher as well as RP columns with lower silanol activity, which is mainly based on hydrophobic interactions. The isomers were also separated on a bare silica column at higher MeOH content using NH4OAc. Since cation-exchange governs this retention, the elution order was different compared to the RP phases. A strong retention on the silica column was observed in ACN, which could be attributed to partition processes as additional retention mechanism. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
36. Effect of flow rate on the sorption breakthrough behaviors of uranium(VI), phosphate, and fulvic acid onto a silica column.
- Author
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Zhang, H. X., Song, Sh. P., and Tao, Z. Y.
- Subjects
- *
FULVIC acids , *URANIUM , *SILICA , *ABSORPTION , *ADSORPTION (Chemistry) - Abstract
Five column experiments have been carried out to investigate the effect of flow rate on the breakthrough curves (BTCs) of phosphate, fulvic acid, and uranium(VI) onto a silica column. Both BTCs of phosphate and fulvic acid, and three BTCs of uranium(VI) in the presence and absence of phosphate or fulvic acid at high flow rate published in the previous paper [] were compared with corresponding initial parts of BTCs at low flow rate in this paper. Each BTC in this paper was expressed as both C/Co–t and C/Co–V/Vo plots, where C and Co are the concentrations in the influent and the effluent respectively, t and V are the time and the effluent volume from the start of injection of pulse solution respectively, Vo is the pore volume of the SiO2 column. Based on the experimental results and the relationship among V, t, and flow rate F, it was found that there are advantages to using C/Co–V/Vo plot as BTC to study the effect of flow rate. Based on these comparisons of C/Co–V/Vo plots at different flow rates and the theoretical analysis from the Bohart–Adams sorption model, it was found that the right shift (increase in V/Vo of breakthrough), the left shift (decrease in V/Vo of breakthrough), and the non-shift (non-change in V/Vo of breakthrough) of initial parts of BTCs with increasing flow rate are certain to occur instead of only left shift and that three different trends of shifts can be mainly attributed to different rate-controlling mechanisms of sorption process. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
37. Development and validation of a hydrophilic interaction liquid chromatography–tandem mass spectrometry method for determination of isoniazid in human plasma
- Author
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Huang, Liusheng, Marzan, Florence, Jayewardene, Anura L., Lizak, Patricia S., Li, Xiaohua, and Aweeka, Francesca T.
- Subjects
- *
LIQUID chromatography , *TANDEM mass spectrometry , *ISONIAZID , *BLOOD plasma , *PRECIPITATION (Chemistry) , *SILICA , *MOLECULAR weights - Abstract
Abstract: An LC–MS/MS method for the determination of isoniazid in human plasma was developed and validated. Human plasma aliquots of 100μL were used for analysis. The assay used nialamide as the internal standard. The calibration curve concentration range was 50–10,000ng/mL. Sample preparation utilized protein precipitation, and the supernatant was directly injected onto silica column without reconstitution. The recovery was over 90% and matrix effect was negligible. The method is simple and fast, which is advantageous in respect to instability of isoniazid in human plasma and loss on reconstitution due to its low molecular weight. [Copyright &y& Elsevier]
- Published
- 2009
- Full Text
- View/download PDF
38. Estimation of the extent of the water-rich layer associated with the silica surface in hydrophilic interaction chromatography
- Author
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McCalley, David V. and Neue, Uwe D.
- Subjects
- *
SILICON compounds , *VOLUME (Cubic content) , *BENZENE , *AROMATIC compounds - Abstract
Abstract: The possible presence of a mobile phase layer rich in water on the surface of silica columns used under conditions typical in hydrophilic interaction chromatography was investigated by the injection of a small hydrophobic solute (benzene) using acetonitrile–water mobile phases of high organic content. Benzene does not partition into this layer and is thus partially excluded from the pores of the phase up to a water content of about 30%, after which hydrophobic retention of the solute on siloxane bonds is observed. In 100% acetonitrile, the retention volume of benzene was smaller than that estimated either by pycnometry or by calculation from the basic physical parameters of the column. This result might be attributable to the larger size of the benzene molecule: the elution volume of a molecule is the pore volume minus a surface layer half the diameter of the analyte molecule. However, some influence of strongly adsorbed water that remains on the surface of the phase even after extensive purging with dry acetonitrile cannot be entirely discounted. The results suggest that about 4–13% of the pore volume of a silica phase is occupied by a water-rich layer when using acetonitrile–water containing 95–70% (v/v) acetonitrile. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
- View/download PDF
39. Influence of Structural Differences of Dextromethorphan and its Three Metabolites on their Simultaneous Separation using Various Silica Columns with a Simple Aqueous Mobile Phase.
- Author
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Chen, Chien‐Ho, Huang, Ming‐Chun, Ho, Hsiu‐O, Chen, Hsueh‐Hui, and Sheu, Ming‐Thau
- Subjects
- *
ACETIC acid , *METABOLITES , *METHANOL , *ACETONITRILE , *NONAQUEOUS solvents , *ORGANIC compounds - Abstract
The retention behaviors and efficiencies of the chromatographic separation of dextromethorphan (DM) and its metabolites (dextrorphan (DX), 3-methoxymorphinan (MM), and 3-hydroxymorphinan (HM)), on three different silica columns (Inertsil, μ-Porasil, and Lichrospher), were compared using a simple aqueous mobile phase consisting of an organic solvent (methanol or acetonitrile) and water at different volume ratios (1:9 to 9:1) containing triethylamine (TEA) and acetic acid (ACH). Results demonstrated that the retention capacities for basic compounds with the same ionization conditions of the silanol group were the largest for the Lichrospher column, followed by the μ-Porasil one, with the Inertsil column exhibiting the lowest level. Based on their physical characteristics, the larger retention capacities for DM and its three metabolites in the LiChrospher column compared to those of the Inertsil and μ-Porasil columns may have been because the LiChrospher column has the largest surface area for interaction. However, since the surface areas of the Inertsil and μ-Porasil columns are similar, the greater retention capacities for DM and its three metabolites in the μ-Porasil column can probably be attributed to the existence of a greater number of silanol groups than in the Inersil column. This also demonstrates that the interaction of tertiary amines with ionized silanol groups is greater than that of secondary amines resulting in the elution order being MM>DM and HM>DX. However, O-demethylation to expose metabolites with a phenolic hydroxy group seemed to decrease the retention capacity, thus yielding the elution order of DX>DM (tertiary amine) and HM>MM (secondary amine). This might be attributable to the negative charge repulsion between phenoxyl groups (PhO-) and ionized silanol groups (SiO-) decreasing the affinity of basic compounds. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
40. Is hydrophilic interaction chromatography with silica columns a viable alternative to reversed-phase liquid chromatography for the analysis of ionisable compounds?
- Author
-
McCalley, David V.
- Subjects
- *
CHROMATOGRAPHIC analysis , *SILICON compounds , *LIQUID chromatography , *HYDROGEN-ion concentration - Abstract
Abstract: The separation of acidic, neutral and particularly basic solutes was investigated using a bare silica column, mostly under hydrophilic interaction chromatography (HILIC) conditions with water concentrations >2.5% and with >70% acetonitrile (ACN). Profound changes in selectivity could be obtained by judicious selection of the buffer and its pH. Acidic solutes had low retention or showed exclusion in ammonium formate buffers, but were strongly retained when using trifluoroacetic acid (TFA) buffers, possibly due to suppression of repulsion of the solute anions from ionised silanol groups at the low of TFA solutions of aqueous ACN. At high buffer pH, the ionisation of weak bases was suppressed, reducing ionic (and possibly hydrophilic retention) leading to further opportunities for manipulation of selectivity. Peak shapes of basic solutes were excellent in ammonium formate buffers, and overloading effects, which are a major problem for charged bases in RPLC, were relatively insignificant in analytical separations using this buffer. HILIC separations were ideal for fast analysis of ionised bases, due to the low viscosity of mobile phases with high ACN content, and the favourable Van Deemter curves which resulted from higher solute diffusivities. [Copyright &y& Elsevier]
- Published
- 2007
- Full Text
- View/download PDF
41. Separation of amino acids, peptides and corresponding Amadori compounds on a silica column at elevated temperature
- Author
-
Hao, Zhigang, Lu, Chih-Ying (Joey), Xiao, Baiming, Weng, Naidong, Parker, Barry, Knapp, Michael, and Ho, Chi-Tang
- Subjects
- *
SEPARATION (Technology) , *GLUCOSE , *AMINO acids , *SILICA - Abstract
Abstract: Maillard reaction of glucose with amino acids and peptides has become a very important experimental model in the food flavor and pharmaceutical industries for better understanding the mechanism of food flavor generation and drug stability. Because of the amino acid and sugar functional groups present in their structures, most of the reaction components formed during the initial stages of Maillard reaction as well as the substrates are relatively polar. These compounds are poorly retained on a conventional reversed phase column. While polar stationary phases like HILIC column do provide better retention for these polar components, method selectivity could still be a challenge due to the structural similarity between these analytes. In this report, parameters such as pH, mobile phase composition and temperature were investigated using different brands of bare silica columns in order to separate glycine (G), diglycine (DG), triglycine (TG), and the corresponding Amadori compounds of glucose–glycine (GG), glucose–diglycine (GDG) and glucose–triglycine (GTG). An excellent separation for glycine, glycine peptides and their Amadori compounds was obtained on a bare silica column at an elevated temperature. [Copyright &y& Elsevier]
- Published
- 2007
- Full Text
- View/download PDF
42. Gold-Catalyzed N,O-Functionalizations of 6-Allenyl-1-ynes with N-Hydroxyanilines To Construct Benzo[b]-azepin-4-one Cores
- Author
-
Rai-Shung Liu, Antony Sekar Kulandai Raj, Bhanudas Dattatray Mokar, and Balaji S. Kale
- Subjects
chemistry.chemical_classification ,010405 organic chemistry ,Chemistry ,Allene ,Organic Chemistry ,Silica column ,Hydroxyanilines ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Medicinal chemistry ,0104 chemical sciences ,Catalysis ,Nitrone ,chemistry.chemical_compound ,Organic chemistry ,Physical and Theoretical Chemistry - Abstract
Gold-catalyzed reactions of 6-allen-1-ynes with N-hydroxyanilines afford thermally stable benzoazepin-4-ones in anti-selectivity; these anti-configured products are easily isomerized to their syn-isomers on a silica column. The mechanism of reactions likely involve initial nitrone/allene cycloadditions, followed by skeletal rearrangement of resulting intermediates.
- Published
- 2017
- Full Text
- View/download PDF
43. Cuparane sesquiterpenes from Laurencia natalensis Kylin as inhibitors of alpha-glucosidase, dipeptidyl peptidase IV and xanthine oxidase
- Author
-
Wendy A. Stirk, Kannan R.R. Rengasamy, Lenka Poštová Slavětínská, Manoj G. Kulkarni, and Johannes Van Staden
- Subjects
chemistry.chemical_classification ,010405 organic chemistry ,Stereochemistry ,Silica column ,030204 cardiovascular system & hematology ,Biology ,01 natural sciences ,Dipeptidyl peptidase ,0104 chemical sciences ,Hexane ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Enzyme ,chemistry ,Biochemistry ,Alpha-glucosidase ,biology.protein ,Marine alga ,Xanthine oxidase ,Agronomy and Crop Science ,Laurencia natalensis - Abstract
The unexplored southern African red marine alga Laurencia natalensis was studied in a search for new enzyme inhibitors. A new cuparane sesquiterpenoid, 8-deoxyalgoane (1) along with two known sesquiterpenoids namely 1-deacetoxyalgoane (2) and algoane (3) were isolated from the MeOH:DCM extract using silica column chromatography with an hexane:EtOAc solvent system. Algoane was obtained as colourless prisms and structures of the three compounds were confirmed by NMR. The three compounds were tested for enzyme inhibitory activities against alpha-glucosidase and dipeptidyl peptidase IV (DPP-IV). Algoane was also tested against xanthine oxidase. In addition, molecular properties were determined to establish drug likeness, and other physico-chemical properties. This is the first report on the chemistry and biological properties of L. natalensis.
- Published
- 2017
- Full Text
- View/download PDF
44. Simple Silica Column–Based Method to Quantify Inorganic Polyphosphates in Cartilage and Other Tissues
- Author
-
Toshikazu Shiba, William L. Stanford, Rahul Gawri, Ae-Ri Ji, Rita A. Kandel, and Whitaik David Lee
- Subjects
0301 basic medicine ,Biomedical Engineering ,Physical Therapy, Sports Therapy and Rehabilitation ,Sensitivity and Specificity ,Chemistry Techniques, Analytical ,Fluorescence ,Phosphates ,03 medical and health sciences ,Mammalian tissue ,Basic Science ,Polyphosphates ,otorhinolaryngologic diseases ,medicine ,Animals ,Humans ,Immunology and Allergy ,Fluorometry ,neoplasms ,Simple (philosophy) ,Mammals ,Cartilage ,Reproducibility of Results ,Silica column ,pathological conditions, signs and symptoms ,Anatomy ,Silicon Dioxide ,digestive system diseases ,surgical procedures, operative ,030104 developmental biology ,medicine.anatomical_structure ,Biophysics - Abstract
Objective. Inorganic polyphosphates (polyP) play a multitude of roles in mammalian biology. PolyP research is hindered by the lack of a simple and sensitive quantification method. The aim of this study was to develop a robust method for quantifying the low levels of polyP in mammalian tissue such as cartilage, which is rich in macromolecules that interfere with its determination. Design. Native and in vitro formed tissues were digested with proteinase K to release sequestrated polyP. The tissue digest was loaded on to silica spin columns, followed by elution of bound polyP and various treatments were assessed to minimize non-polyP fluorescence. The eluent was then quantified for polyP content using fluorometry based on DAPI (4′,6-diamidino-2-phenylindole) fluorescence shift occurring with polyP. Results. Proteinase K pretreatment reduced the inhibitory effect of proteins on polyP recovery. The eluent was contaminated with nucleic acids and glycosaminoglycans, which cause extraneous fluorescence signals. These were then effectively eliminated by nucleases treatment and addition of concentrated Tris buffer. PolyP levels were quantified and recovery ratio determined using samples spiked with a known amount of polyP. This silica spin column method was able to recover at least 80% of initially loaded polyP, and detect as little as 10−10 mol. Conclusions. This sensitive, reproducible, easy to do method of quantifying polyP will be a useful tool for investigation of polyP biology in mammalian cells and tissues. Although the protocol was developed for mammalian tissues, this method should be able to quantify polyP in most biological sources, including fluid samples such as blood and serum.
- Published
- 2017
- Full Text
- View/download PDF
45. Simple means to alleviate sensitivity loss by trifluoroacetic acid (TFA) mobile phases in the hydrophilic interaction chromatography–electrospray tandem mass spectrometric (HILIC–ESI/MS/MS) bioanalysis of basic compounds
- Author
-
Shou, Wilson Z. and Naidong, Weng
- Subjects
- *
ACETIC acid , *HIGH performance liquid chromatography , *MASS spectrometry , *INTERFACES (Physical sciences) , *FATTY acids - Abstract
Abstract: Trifluoroacetic acid (TFA) is a commonly used additive in HPLC and LC–MS analysis of basic compounds. It is also routinely added to aqueous–organic mobile phases utilized in the hydrophilic interaction chromatography–electrospray tandem mass spectrometry (HILIC–ESI/MS/MS) technique used in our laboratories for bioanalysis. However, TFA is known to suppress the ESI signals of analytes due to its ability to form gas-phase ion pairs with positively-charged analyte ions. The most common method to overcome this problem involves the post-column addition of a mixture of propionic acid and isopropanol. However the post-column addition setup requires additional pumps and is not desirable for continuous analysis of large amounts of samples. In this paper we present a simple yet very effective means of minimizing the negative effect of TFA in bioanalysis by direct addition of 0.5% acetic acid or 1% propionic acid to mobile phases containing either 0.025 or 0.05% TFA. A factor of two- to five-fold signal enhancement was achieved for eight basic compounds studied. Furthermore, chromatography integrity was maintained even with the addition of acetic acid and propionic acid to existing TFA mobile phases. This method has been successfully applied to the HILIC–ESI/MS/MS high-throughput analysis of extracted biological samples to support pre-clinical and clinical studies. [Copyright &y& Elsevier]
- Published
- 2005
- Full Text
- View/download PDF
46. Influence of the pressure on the properties of chromatographic columns: III. Retention volume of thiourea, hold-up volume, and compressibility of the C18-bonded layer
- Author
-
Gritti, Fabrice and Guiochon, Georges
- Subjects
- *
HIGH pressure (Science) , *PROPERTIES of matter , *SURFACE chemistry , *HYDROSTATICS - Abstract
Abstract: The influence of the average column pressure (ACP) on the elution volume of thiourea was measured on two RPLC columns, packed with Resolve-C18 (surface coverage 2.45 mol/m2) and Symmetry-C18 (surface coverage 3.18 mol/m2), and it was compared to that measured under the same conditions on an underivatized silica (Resolve). Five different methanol–water mixtures (20, 40, 60, 80 and 100% methanol, v/v) were used. Once corrected for the compressibility of the mobile phase, the data show that the elution volume of thiourea increases between 3 and 7% on the C18-bonded columns when the ACP increases from 50 to 350 bar, depending on the methanol content of the eluent. No such increase is observed on the underivatized Resolve silica column. This increase is too large to be ascribed to the compressibility of the stationary phase (silica + C18 bonded chains) which accounts for less than 5% of the variation of the retention factor. It is shown that the reason for this effect is of thermodynamic origin, the difference between the partial molar volume of the solute in the stationary and the mobile phase, , controlling the retention volume of thiourea. While is nearly constant for all mobile phase compositions on Resolve silica (with mL/mol), on RPLC phases, it significantly increases with increasing methanol content, particularly above 60% methanol. It varies between 5 mL/mol and 17 mL/mol on Resolve-C18 and between 9 mL/mol and 25 mL/mol on Symmetry-C18. The difference in surface coverage between these two RP-HPLC stationary phases increases the values of by about 5 mL/mol. [Copyright &y& Elsevier]
- Published
- 2005
- Full Text
- View/download PDF
47. Evaluation of a monolithic silica column operated in the hydrophilic interaction chromatography mode with evaporative light scattering detection for the separation and detection of counter-ions
- Author
-
Pack, Brian W. and Risley, Donald S.
- Subjects
- *
SILICON compounds , *CHROMATOGRAPHIC analysis , *CATIONS , *SODIUM salts - Abstract
Abstract: In this work a monolithic silica column operated in the hydrophilic interaction chromatography (HILIC) mode in conjunction with an evaporative light scattering detector (ELSD) was investigated. Lithium, sodium and potassium were used as the test counter-ions for this evaluation. Chromatographic properties of this column operated in the HILIC mode were determined by varying key mobile phase parameters, such as pH, flow rate, buffer strength, acid and organic modifier. As organic content was increased from 60 to 90% acetonitrile, retention time increased on average by a factor of seven for the test cations listed above. Buffer concentration and pH were also observed to have an effect, although not as significant as the HILIC effect that was observed by changing organic content. Flow rates up to 5mL/min were utilized to perform counter-ion separations in less than 3min. After examining the changes in retention, resolution, and peak shape an optimized method was established and then further evaluated for linearity, reproducibility, and limit of detection (LOD) for sodium. Linearity was acceptable with an R 2 value of 0.999 across the working-standard range and a LOD of 0.1μg/mL was calculated. The reproducibility on the counter-ion determination from pharmaceutical sodium salts was 1.6% R.S.D. on average, and the accuracy of the counter-ion prediction was approximately 3% from theory when salt content was corrected for potency. [Copyright &y& Elsevier]
- Published
- 2005
- Full Text
- View/download PDF
48. Influence of the pressure on the properties of chromatographic columns: I. Measurement of the compressibility of methanol–water mixtures on a mesoporous silica adsorbent
- Author
-
Gritti, Fabrice and Guiochon, Georges
- Subjects
- *
PRESSURE , *HIGH pressure (Science) , *COMPRESSIBILITY , *HYDROSTATICS - Abstract
Abstract: The compressibilities of aqueous solutions of methanol or acetonitrile containing 0, 20, 40, 60, 80 and 100% (v/v) organic solvent were measured with a dynamic chromatographic method. The elution volumes of thiourea samples (2 L) in these solutions were measured at different average column pressures, adjusted by placing suitable capillary restrictors on-line, after the detector. The reproducibility of the measurements was better than 0.2%. In the range of average pressures studied (10–350 bar), the maximum change in elution volume of thiourea is 1.3% (in pure water) and 4.0% (in pure methanol). This difference is due to the different compressibilities of these pure solvents. For mixtures, the plots of the elution volume of thiourea versus the pressure are convex downward, which is inconsistent with the opposite curvature predicted by the classical Tait model of liquid compressibility. This difference is explained by the variation of the amount of thiourea adsorbed with the pressure. The deconvolution of the two effects, adsorption of thiourea and solvent compressibility, allows a fair and consistent determination of the compressibilities of the methanol–water mixtures. A column packed with non-porous silica particles was also used to determine the compressibility of methanol–water and acetonitrile–water mixtures. A negative deviation by respect to ideal behavior was observed. [Copyright &y& Elsevier]
- Published
- 2005
- Full Text
- View/download PDF
49. A sensitive LC/MS/MS method using silica column and aqueous–organic mobile phase for the analysis of loratadine and descarboethoxy-loratadine in human plasma
- Author
-
Naidong, Weng, Addison, T., Schneider, T., Jiang, X., and Halls, T.D.J.
- Subjects
- *
ANTIHISTAMINES , *LIQUID chromatography , *BLOOD plasma - Abstract
A sensitive method using liquid chromatography with tandem mass spectrometric detection (LC/MS/MS) was developed and validated for the simultaneous analysis of antihistamine drug loratadine (LOR) and its active metabolite descarboethoxy-loratadine (DCL) in human plasma. Deuterated analytes, i.e. LOR-d3 and DCL-d3 were used as the internal standards (I.S.). Analytes were extracted from alkalized human plasma by liquid/liquid extraction using hexane. The extract was evaporated to dryness under nitrogen, reconstituted with 0.1% (v/v) of trifluoroacetic acid (TFA) in acetonitrile, and injected onto a 50×3.0 mm I.D. 5 μm, silica column with an aqueous–organic mobile phase consisted of acetonitrile, water, and TFA (90:10:0.1, v/v/v). The chromatographic run time was 3.0 min per injection and flow rate was 0.5 ml/min. The retention time was 1.2 and 2.0 min for LOR and DCL, respectively. The tandem mass spectrometric detection was by monitoring singly charged precursor→product ion transitions: 383→337 (m/z) for LOR, 311→259 (m/z) for DCL, 388→342 (m/z) for LOR-d3, and 316→262 (m/z) for DCL-d3. The low limit of quantitation (LLOQ) was 10 pg/ml for LOR and 25 pg/ml for DCL. The inter-day precision of the quality control (QC) samples was 3.5–9.4% relative standard deviation (R.S.D.). The inter-day accuracy of the QC samples was 99.0–107.9% of the nominal values. [Copyright &y& Elsevier]
- Published
- 2003
- Full Text
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50. Development of an analytical method for simultaneously determining TBBPA and HBCDs in various foods
- Author
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Gil-Jin Kang, Jieun Anh, Youngwon Kang, Dong-Sul Kim, and Joon-Goo Lee
- Subjects
Meat ,Polybrominated Biphenyls ,Tandem mass spectrometry ,01 natural sciences ,Analytical Chemistry ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Tandem Mass Spectrometry ,Animals ,Chromatography, High Pressure Liquid ,Flame Retardants ,Hexabromocyclododecane ,010401 analytical chemistry ,Silica column ,04 agricultural and veterinary sciences ,General Medicine ,Contamination ,040401 food science ,0104 chemical sciences ,Hydrocarbons, Brominated ,Accelerated solvent extraction ,chemistry ,Seafood ,Environmental chemistry ,Tetrabromobisphenol A ,Environmental science ,Food Analysis ,Food Science - Abstract
Tetrabromobisphenol A (TBBPA) and Hexabromocyclododecanes (HBCDs) are commonly used as brominated flame retardants in large volumes, and accumulate in plants and animals in the environment, and people are exposed to them when consuming food. As many countries are monitoring them in food, it is necessary to develop a method to analyze them simultaneously for cost efficiency. A method was developed and optimized under different conditions using accelerated solvent extraction to extract the lipids from the samples, acid silica column to clean the samples and liquid chromatography coupled with tandem mass spectrometry to determine TBBPA and HBCDs. The method was validated in different kinds of food. Uncertainty of measurement was calculated by combining all uncertainties of contributors. Intermediate precision (reproducibility) was the most influential contributor to uncertainty. 5 food categories with 115 samples were analyzed with the method, and mackerels containing high level of fat were highly contaminated by TBBPA and HBCDs.
- Published
- 2019
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