1. Workflow and normalization strategies employed on CHRIS epidemiological study for targeted metabolomics
- Author
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Hernandes, Vinicius Veri, Rainer, Johannes, Hicks, Andrew, Pramstaller, Peter, and Sigurdur Smarason
- Subjects
normalization ,data analysis ,metabolomics - Abstract
The Cooperative Health Research in South Tyrol (CHRIS) is a population-based study which aims to investigate mainly neurological and cardiovascular conditions, as well as the process of ageing. More than 13,000 volunteers have been part of the program, which includes clinical tests (blood glucose, antinuclear antibodies, iron metabolism markers and liver function markers, among others), psychological and life style surveys and blood sampling for genotyping and metabolomics study. Using both targeted and untargeted approaches, the objective is to enhance metabolite coverage, maximizing the information obtained for this cohort. Targeted method is based on the Absolute IDQ p180 Kit from Biocrates, which provides a reproducible workflow for sample preparation and the quantification of around 180 metabolites through a liquid chromatography - mass spectrometry (LC-MS) system. The workflow is optimized according to the LC-MS equipment employed at the analysis step (in this case, a QTRAP 6500 from AB Sciex) and each sample set is prepared in the way that 2 derivative subsets are acquired. First subset is used for reversed phase analysis (covering amino acids and biogenic amines) and the second is submitted to a flow injection analysis (FIA) for accessing hexose, acyl carnitines and glycero and sphingolipids. Here we present the overall workflow and methodology for the targeted metabolomics approach of the CHRIS study and results from the employed normalization strategy and quality assessments.
- Published
- 2021
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