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6. Bundle-Specific Tractography

Author

Rheault, Francois, St-Onge, Etienne, Sidhu, Jasmeen, Chenot, Quentin, Petit, Laurent, Descoteaux, Maxime, Hege, Hans-Christian, Series Editor, Hoffman, David, Series Editor, Johnson, Christopher R., Series Editor, Polthier, Konrad, Series Editor, Rumpf, Martin, Series Editor, Kaden, Enrico, editor, Grussu, Francesco, editor, Ning, Lipeng, editor, Tax, Chantal M. W., editor, and Veraart, Jelle, editor

Published
2018
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8. Limits to anatomical accuracy of diffusion tractography using modern approaches

Author

Schilling, Kurt G., Nath, Vishwesh, Hansen, Colin, Parvathaneni, Prasanna, Blaber, Justin, Gao, Yurui, Neher, Peter, Aydogan, Dogu Baran, Shi, Yonggang, Ocampo-Pineda, Mario, Schiavi, Simona, Daducci, Alessandro, Girard, Gabriel, Barakovic, Muhamed, Rafael-Patino, Jonathan, Romascano, David, Rensonnet, Gaëtan, Pizzolato, Marco, Bates, Alice, Fischi, Elda, Thiran, Jean-Philippe, Canales-Rodríguez, Erick J., Huang, Chao, Zhu, Hongtu, Zhong, Liming, Cabeen, Ryan, Toga, Arthur W., Rheault, Francois, Theaud, Guillaume, Houde, Jean-Christophe, Sidhu, Jasmeen, Chamberland, Maxime, Westin, Carl-Fredrik, Dyrby, Tim B., Verma, Ragini, Rathi, Yogesh, Irfanoglu, M. Okan, Thomas, Cibu, Pierpaoli, Carlo, Descoteaux, Maxime, Anderson, Adam W., and Landman, Bennett A.

Published
2019
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14. Bundle-Specific Tractography

Author

Rheault, Francois, primary, St-Onge, Etienne, additional, Sidhu, Jasmeen, additional, Chenot, Quentin, additional, Petit, Laurent, additional, and Descoteaux, Maxime, additional

Published
2018
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15. Author Correction: The challenge of mapping the human connectome based on diffusion tractography

Author

Maier-Hein, Klaus H., Neher, Peter F., Houde, Jean-Christophe, Côté, Marc-Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang-Cheng, Lin, Ying-Chia, Ji, Qing, Reddick, Wilburn E., Glass, John O., Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, He, Renjie, Li, Qiang, Westin, Carl-Fredrik, Deslauriers-Gauthier, Samuel, González, J. Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M. W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Auría, Anna, Esteban, Oscar, Lemkaddem, Alia, Thiran, Jean-Philippe, Cetingul, H. Ertan, Odry, Benjamin L., Mailhe, Boris, Nadar, Mariappan S., Pizzagalli, Fabrizio, Prasad, Gautam, Villalon-Reina, Julio E., Galvis, Justin, Thompson, Paul M., De Santiago Requejo, Francisco, Laguna, Pedro Luque, Lacerda, Luis Miguel, Barrett, Rachel, Dell’Acqua, Flavio, Catani, Marco, Petit, Laurent, Caruyer, Emmanuel, Daducci, Alessandro, Dyrby, Tim B., Holland-Letz, Tim, Hilgetag, Claus C., Stieltjes, Bram, and Descoteaux, Maxime

Published
2019
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16. The challenge of mapping the human connectome based on diffusion tractography

Author

Maier-Hein, Klaus H., Neher, Peter F., Houde, Jean-Christophe, Côté, Marc-Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang-Cheng, Lin, Ying-Chia, Ji, Qing, Reddick, Wilburn E., Glass, John O., Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, He, Renjie, Li, Qiang, Westin, Carl-Fredrik, Deslauriers-Gauthier, Samuel, González, J. Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M. W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Auría, Anna, Esteban, Oscar, Lemkaddem, Alia, Thiran, Jean-Philippe, Cetingul, H. Ertan, Odry, Benjamin L., Mailhe, Boris, Nadar, Mariappan S., Pizzagalli, Fabrizio, Prasad, Gautam, Villalon-Reina, Julio E., Galvis, Justin, Thompson, Paul M., Requejo, Francisco De Santiago, Laguna, Pedro Luque, Lacerda, Luis Miguel, Barrett, Rachel, Dell’Acqua, Flavio, Catani, Marco, Petit, Laurent, Caruyer, Emmanuel, Daducci, Alessandro, Dyrby, Tim B., Holland-Letz, Tim, Hilgetag, Claus C., Stieltjes, Bram, and Descoteaux, Maxime

Published
2017
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17. Inter-lobar connectivity of the frontal lobe association tracts consistently observed in 105 healthy adults

Author

Whittingstall, Kevin, Sidhu, Jasmeen, Descoteaux, Maxime, Whittingstall, Kevin, Sidhu, Jasmeen, and Descoteaux, Maxime

Abstract

Problem: Diffusion magnetic resonance imaging (dMRI) is the only method to examine in-vivo white matter pathways/tracts. However, the tracts obtained from dMRI are fundamentally unreliable due to the problem of the inconsistent positive. The inconsistent positive tract is a tract that is observed inconsistently across a population. For example, a tract that exists in 2/3 of a population is an inconsistent positive as it does not exist consistently across a population. Two features drive the inconsistent positive (1) diffusion MRI is a false positive prone methodology, where for every one valid tract rendered, four invalid tracts are rendered (Maier-Hein et al., 2017); (2) individual neuroanatomical differences will also contribute to the inconsistent positive (Catani et al., 2017). Frontal lobe intrahemispheric cortical to cortical (association) connectivity is particularly vulnerable to the inconsistent positive dilemma because of two reasons. One being probability, as the frontal lobe is the largest lobe of the brain with a high degree of parcels/areas/ subcomponents (Semendeferi, Lu et al. 2002). The second being a lack of a systematic methodology for anatomical exploration resulting in modern discoveries of possibly ancient networks (Catani, Mesulam et al. 2013). Solution: This work aimed to introduce TractoFind, a state-of-the-art dMRI population-level cohort analysis tool that aimed to increase the reliability of in-vivo white matter connectivity analysis. TractoFind utilizes occurrence/frequency, shape/trajectory, and volume information of a population to obtain reliable white matter tracts. It was theorized the application of TractoFind to analyze frontal lobe interhemispheric cortical to cortical (association) connectivity would result in finding novel/atypical tracts with unique functions. Conversely, it was speculated that the application of TractoFind would be stringent, something that was examined within this work by relaxing the shape reliab, Problème: L'imagerie par résonance magnétique de diffusion (IRMd) est la seule méthode pour examiner les voies de la substance blanche in vivo. Cependant, les voies obtenus à partir de l'IRMd sont fondamentalement peu fiables en raison du problème du positif inconstant. La voie positive inconstante est une voie qui est observée de manière inconstante dans une population. Par exemple, si une voie existe dans les 2/3 d'une population, il s'agit d'un positif inconstant car elle n'existe pas de manière constante dans une population. Deux caractéristiques entraînent le positif inconstant (1) l'IRM de diffusion est une méthodologie sujette aux faux positifs, où pour chaque voie valide rendue, quatre voies invalides sont rendues (Maier-Hein et al., 2017); (2) les différences neuroanatomiques individuelles contribueront également au positif inconstant (Catani et al., 2017). La connectivité corticale intra-hémisphérique à corticale (association) du lobe frontal est particulièrement vulnérable au dilemme positif inconstant pour deux raisons. L'un étant la probabilité car le lobe frontal est le plus grand lobe du cerveau avec un degré élevé de parcelles/zones/sous-composantes (Semendeferi, Lu, Schenker et Damásio, 2002). La seconde étant l'absence d'une méthodologie systématique pour l'exploration anatomique entraînant des découvertes modernes de réseaux possiblement anciens (Catani et al., 2013). Solution: Ce travail visait à introduire TractoFind, un outil d'analyse de cohorte dMRI de pointe au niveau de la population qui visait à augmenter la fiabilité de l'analyse de connectivité de la substance blanche in vivo. TractoFind utilise les informations d'occurrence/fréquence, de forme/ trajectoire et de volume d'une population pour obtenir des voies de matière blanche fiables. Il a été supposé que l'application de TractoFind pour analyser le lobe frontal entraînerait la recherche de voies nouvelles/atypiques avec des fonctions uniques.

Published
2022

18. Structural Connectivity Alterations in Operculo-Insular Epilepsy

Author

Obaid, Sami, primary, Rheault, François, additional, Edde, Manon, additional, Guberman, Guido I., additional, St-Onge, Etienne, additional, Sidhu, Jasmeen, additional, Bouthillier, Alain, additional, Daducci, Alessandro, additional, Ghaziri, Jimmy, additional, Bojanowski, Michel W., additional, Nguyen, Dang K., additional, and Descoteaux, Maxime, additional

Published
2021
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19. Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge

Author

Beeldverwerking ISI, Cancer, Brain, Nath, Vishwesh, Schilling, Kurt G., Parvathaneni, Prasanna, Huo, Yuankai, Blaber, Justin A., Hainline, Allison E., Barakovic, Muhamed, Romascano, David, Rafael-Patino, Jonathan, Frigo, Matteo, Girard, Gabriel, Thiran, Jean Philippe, Daducci, Alessandro, Rowe, Matt, Rodrigues, Paulo, Prčkovska, Vesna, Aydogan, Dogu B., Sun, Wei, Shi, Yonggang, Parker, William A., Ould Ismail, Abdol A., Verma, Ragini, Cabeen, Ryan P., Toga, Arthur W., Newton, Allen T., Wasserthal, Jakob, Neher, Peter, Maier-Hein, Klaus, Savini, Giovanni, Palesi, Fulvia, Kaden, Enrico, Wu, Ye, He, Jianzhong, Feng, Yuanjing, Paquette, Michael, Rheault, Francois, Sidhu, Jasmeen, Lebel, Catherine, Leemans, Alexander, Descoteaux, Maxime, Dyrby, Tim B., Kang, Hakmook, Landman, Bennett A., Beeldverwerking ISI, Cancer, Brain, Nath, Vishwesh, Schilling, Kurt G., Parvathaneni, Prasanna, Huo, Yuankai, Blaber, Justin A., Hainline, Allison E., Barakovic, Muhamed, Romascano, David, Rafael-Patino, Jonathan, Frigo, Matteo, Girard, Gabriel, Thiran, Jean Philippe, Daducci, Alessandro, Rowe, Matt, Rodrigues, Paulo, Prčkovska, Vesna, Aydogan, Dogu B., Sun, Wei, Shi, Yonggang, Parker, William A., Ould Ismail, Abdol A., Verma, Ragini, Cabeen, Ryan P., Toga, Arthur W., Newton, Allen T., Wasserthal, Jakob, Neher, Peter, Maier-Hein, Klaus, Savini, Giovanni, Palesi, Fulvia, Kaden, Enrico, Wu, Ye, He, Jianzhong, Feng, Yuanjing, Paquette, Michael, Rheault, Francois, Sidhu, Jasmeen, Lebel, Catherine, Leemans, Alexander, Descoteaux, Maxime, Dyrby, Tim B., Kang, Hakmook, and Landman, Bennett A.

Published
2020

20. Author Correction : The challenge of mapping the human connectome based on diffusion tractography (Nature Communications, (2017), 8, 1, (1349), 10.1038/s41467-017-01285-x)

Author

Maier-Hein, Klaus H., Neher, Peter F., Houde, Jean Christophe, Côté, Marc Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang Cheng, Lin, Ying Chia, Ji, Qing, Reddick, Wilburn E., Glass, John O., Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, He, Renjie, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J. Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Maier-Hein, Klaus H., Neher, Peter F., Houde, Jean Christophe, Côté, Marc Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang Cheng, Lin, Ying Chia, Ji, Qing, Reddick, Wilburn E., Glass, John O., Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, He, Renjie, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J. Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, and Barakovic, Muhamed

Published
2019

21. Author Correction: The challenge of mapping the human connectome based on diffusion tractography (Nature Communications, (2017), 8, 1, (1349), 10.1038/s41467-017-01285-x)

Author

Beeldverwerking ISI, Brain, Imago ISI, Onderzoek Radiotherapie, Highfield Research Group, Regenerative Medicine and Stem Cells, Cancer, Maier-Hein, Klaus H., Neher, Peter F., Houde, Jean Christophe, Côté, Marc Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang Cheng, Lin, Ying Chia, Ji, Qing, Reddick, Wilburn E., Glass, John O., Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, He, Renjie, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J. Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Beeldverwerking ISI, Brain, Imago ISI, Onderzoek Radiotherapie, Highfield Research Group, Regenerative Medicine and Stem Cells, Cancer, Maier-Hein, Klaus H., Neher, Peter F., Houde, Jean Christophe, Côté, Marc Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang Cheng, Lin, Ying Chia, Ji, Qing, Reddick, Wilburn E., Glass, John O., Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, He, Renjie, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J. Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, and Barakovic, Muhamed

Published
2019

22. Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge

Author

Nath, Vishwesh, primary, Schilling, Kurt G., additional, Parvathaneni, Prasanna, additional, Huo, Yuankai, additional, Blaber, Justin A., additional, Hainline, Allison E., additional, Barakovic, Muhamed, additional, Romascano, David, additional, Rafael‐Patino, Jonathan, additional, Frigo, Matteo, additional, Girard, Gabriel, additional, Thiran, Jean‐Philippe, additional, Daducci, Alessandro, additional, Rowe, Matt, additional, Rodrigues, Paulo, additional, Prčkovska, Vesna, additional, Aydogan, Dogu B., additional, Sun, Wei, additional, Shi, Yonggang, additional, Parker, William A., additional, Ould Ismail, Abdol A., additional, Verma, Ragini, additional, Cabeen, Ryan P., additional, Toga, Arthur W., additional, Newton, Allen T., additional, Wasserthal, Jakob, additional, Neher, Peter, additional, Maier‐Hein, Klaus, additional, Savini, Giovanni, additional, Palesi, Fulvia, additional, Kaden, Enrico, additional, Wu, Ye, additional, He, Jianzhong, additional, Feng, Yuanjing, additional, Paquette, Michael, additional, Rheault, Francois, additional, Sidhu, Jasmeen, additional, Lebel, Catherine, additional, Leemans, Alexander, additional, Descoteaux, Maxime, additional, Dyrby, Tim B., additional, Kang, Hakmook, additional, and Landman, Bennett A., additional

Published
2019
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23. Tractography Reproducibility Challenge with Empirical Data (TraCED): The 2017 ISMRM Diffusion Study Group Challenge

Author

Nath, Vishwesh, primary, Schilling, Kurt, additional, Parvathaneni, Prasanna, additional, Hainline, Allison E., additional, Huo, Yuankai, additional, Blaber, Justin A., additional, Rowe, Matt, additional, Rodrigues, Paulo, additional, Prckovska, Vesna, additional, Aydogan, Baran, additional, Sun, Wei, additional, Shi, Yonggang, additional, Parker, William, additional, Ismail, Abdol Aziz Ould, additional, Verma, Ragini, additional, Cabeen, Ryan P, additional, Toga, Arthur W, additional, Newton, Allen T, additional, Wasserthal, Jakob, additional, Neher, Peter, additional, Maier-Hein, Klaus H, additional, Savini, Giovanni, additional, Palesi, Fulvia, additional, Kaden, Enrico, additional, Wu, Ye, additional, Feng, Yuanjing, additional, He, Jianzhong, additional, Barakovic, Muhamed, additional, Romascano, David, additional, Rafael-Pinto, Jonathan, additional, Frigo, Matteo, additional, Girard, Gabriel, additional, Daducci, Alessandro, additional, Thiran, Jean-Phillipe, additional, Paquette, Michael, additional, Rheault, Francois M, additional, Sidhu, Jasmeen, additional, Lebel, Catherine, additional, Leemans, Alexander, additional, Descoteaux, Maxime, additional, Dyrby, Tim, additional, Kang, Hakmook, additional, and Landman, Bennett A, additional

Published
2018
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24. Limits to anatomical accuracy of diffusion tractography using modern approaches

Author

Schilling, Kurt G, primary, Nath, Vishwesh, additional, Hansen, Colin, additional, Parvathaneni, Prasanna, additional, Blaber, Justin, additional, Gao, Yurui, additional, Neher, Peter, additional, Aydogan, Dogu Baran, additional, Shi, Yonggang, additional, Ocampo-Pineda, Mario, additional, Schiavi, Simona, additional, Daducci, Alessandro, additional, Girard, Gabriel, additional, Barakovic, Muhamed, additional, Rafael-Patino, Jonathan, additional, Romascano, David, additional, Rensonnet, Gaёtan, additional, Pizzolato, Marco, additional, Bates, Alice, additional, Fischi, Elda, additional, Thiran, Jean-Philippe, additional, Canales-Rodríguez, Erick J., additional, Huang, Chao, additional, Zhu, Hongtu, additional, Zhong, Liming, additional, Cabeen, Ryan, additional, Toga, Arthur W, additional, Rheault, Francois, additional, Theaud, Guillaume, additional, Houde, Jean-Christophe, additional, Sidhu, Jasmeen, additional, Chamberland, Maxime, additional, Westin, Carl-Fredrik, additional, Dyrby, Tim B., additional, Verma, Ragini, additional, Rathi, Yogesh, additional, Irfanoglu, M Okan, additional, Thomas, Cibu, additional, Pierpaoli, Carlo, additional, Descoteaux, Maxime, additional, Anderson, Adam W, additional, and Landman, Bennett A, additional

Published
2018
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25. The challenge of mapping the human connectome based on diffusion tractography

Author

Maier-Hein, Klaus H, Neher, Peter F, Houde, Jean-Christophe, Côté, Marc-Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang-Cheng, Lin, Ying-Chia, Ji, Qing, Reddick, Wilburn E, Glass, John O, Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, Renjie, H, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Auría, Anna, Esteban, Oscar, Lemkaddem, Alia, Thiran, Jean-Philippe, Cetingul, H Ertan, Odry, Benjamin L, Mailhe, Boris, Nadar, Mariappan S, Pizzagalli, Fabrizio, Prasad, Gautam, Villalon-Reina, Julio E, Galvis, Justin, Thompson, Paul M., Requejo, Francisco De Santiago, Laguna, Pedro Luque, Lacerda, Luis Miguel, Barrett, Rachel, Dell'Acqua, Flavio, Catani, Marco, Petit, Laurent, Caruyer, Emmanuel, Daducci, Alessandro, Dyrby, Tim B, Holland-Letz, Tim, Hilgetag, Claus C., Stieltjes, Bram, Descoteaux, Maxime, Maier-Hein, Klaus H, Neher, Peter F, Houde, Jean-Christophe, Côté, Marc-Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang-Cheng, Lin, Ying-Chia, Ji, Qing, Reddick, Wilburn E, Glass, John O, Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, Renjie, H, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Auría, Anna, Esteban, Oscar, Lemkaddem, Alia, Thiran, Jean-Philippe, Cetingul, H Ertan, Odry, Benjamin L, Mailhe, Boris, Nadar, Mariappan S, Pizzagalli, Fabrizio, Prasad, Gautam, Villalon-Reina, Julio E, Galvis, Justin, Thompson, Paul M., Requejo, Francisco De Santiago, Laguna, Pedro Luque, Lacerda, Luis Miguel, Barrett, Rachel, Dell'Acqua, Flavio, Catani, Marco, Petit, Laurent, Caruyer, Emmanuel, Daducci, Alessandro, Dyrby, Tim B, Holland-Letz, Tim, Hilgetag, Claus C., Stieltjes, Bram, and Descoteaux, Maxime

Published
2017

26. The challenge of mapping the human connectome based on diffusion tractography

Author

Beeldverwerking ISI, Brain, UMC Utrecht, Highfield Research Group, Maier-Hein, Klaus H, Neher, Peter F, Houde, Jean-Christophe, Côté, Marc-Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang-Cheng, Lin, Ying-Chia, Ji, Qing, Reddick, Wilburn E, Glass, John O, Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, Renjie, H, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Auría, Anna, Esteban, Oscar, Lemkaddem, Alia, Thiran, Jean-Philippe, Cetingul, H Ertan, Odry, Benjamin L, Mailhe, Boris, Nadar, Mariappan S, Pizzagalli, Fabrizio, Prasad, Gautam, Villalon-Reina, Julio E, Galvis, Justin, Thompson, Paul M., Requejo, Francisco De Santiago, Laguna, Pedro Luque, Lacerda, Luis Miguel, Barrett, Rachel, Dell'Acqua, Flavio, Catani, Marco, Petit, Laurent, Caruyer, Emmanuel, Daducci, Alessandro, Dyrby, Tim B, Holland-Letz, Tim, Hilgetag, Claus C., Stieltjes, Bram, Descoteaux, Maxime, Beeldverwerking ISI, Brain, UMC Utrecht, Highfield Research Group, Maier-Hein, Klaus H, Neher, Peter F, Houde, Jean-Christophe, Côté, Marc-Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang-Cheng, Lin, Ying-Chia, Ji, Qing, Reddick, Wilburn E, Glass, John O, Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, Renjie, H, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Auría, Anna, Esteban, Oscar, Lemkaddem, Alia, Thiran, Jean-Philippe, Cetingul, H Ertan, Odry, Benjamin L, Mailhe, Boris, Nadar, Mariappan S, Pizzagalli, Fabrizio, Prasad, Gautam, Villalon-Reina, Julio E, Galvis, Justin, Thompson, Paul M., Requejo, Francisco De Santiago, Laguna, Pedro Luque, Lacerda, Luis Miguel, Barrett, Rachel, Dell'Acqua, Flavio, Catani, Marco, Petit, Laurent, Caruyer, Emmanuel, Daducci, Alessandro, Dyrby, Tim B, Holland-Letz, Tim, Hilgetag, Claus C., Stieltjes, Bram, and Descoteaux, Maxime

Published
2017

27. Tractography-based connectomes are dominated by false-positive connections

Author

Maier-Hein, Klaus H., primary, Neher, Peter, additional, Houde, Jean-Christophe, additional, Côté, Marc-Alexandre, additional, Garyfallidis, Eleftherios, additional, Zhong, Jidan, additional, Chamberland, Maxime, additional, Yeh, Fang-Cheng, additional, Lin, Ying-Chia, additional, Ji, Qing, additional, Reddick, Wilburn E., additional, Glass, John O., additional, Chen, David Qixiang, additional, Feng, Yuanjing, additional, Gao, Chengfeng, additional, Wu, Ye, additional, Ma, Jieyan, additional, Renjie, H, additional, Li, Qiang, additional, Westin, Carl-Fredrik, additional, Deslauriers-Gauthier, Samuel, additional, González, J. Omar Ocegueda, additional, Paquette, Michael, additional, St-Jean, Samuel, additional, Girard, Gabriel, additional, Rheault, François, additional, Sidhu, Jasmeen, additional, Tax, Chantal M.W., additional, Guo, Fenghua, additional, Mesri, Hamed Y., additional, Dávid, Szabolcs, additional, Froeling, Martijn, additional, Heemskerk, Anneriet M., additional, Leemans, Alexander, additional, Boré, Arnaud, additional, Pinsard, Basile, additional, Bedetti, Christophe, additional, Desrosiers, Matthieu, additional, Brambati, Simona, additional, Doyon, Julien, additional, Sarica, Alessia, additional, Vasta, Roberta, additional, Cerasa, Antonio, additional, Quattrone, Aldo, additional, Yeatman, Jason, additional, Khan, Ali R., additional, Hodges, Wes, additional, Alexander, Simon, additional, Romascano, David, additional, Barakovic, Muhamed, additional, Auría, Anna, additional, Esteban, Oscar, additional, Lemkaddem, Alia, additional, Thiran, Jean-Philippe, additional, Cetingul, H. Ertan, additional, Odry, Benjamin L., additional, Mailhe, Boris, additional, Nadar, Mariappan S., additional, Pizzagalli, Fabrizio, additional, Prasad, Gautam, additional, Villalon-Reina, Julio E., additional, Galvis, Justin, additional, Thompson, Paul M., additional, Requejo, Francisco De Santiago, additional, Laguna, Pedro Luque, additional, Lacerda, Luis Miguel, additional, Barrett, Rachel, additional, Dell’Acqua, Flavio, additional, Catani, Marco, additional, Petit, Laurent, additional, Caruyer, Emmanuel, additional, Daducci, Alessandro, additional, Dyrby, Tim B., additional, Holland-Letz, Tim, additional, Hilgetag, Claus C., additional, Stieltjes, Bram, additional, and Descoteaux, Maxime, additional

Published
2016
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29. Tractography Reproducibility Challenge With Empirical Data (TraCED): The 2017 ISMRM Diffusion Study Group Challenge

Author

Nath, Vishwesh, Schilling, Kurt, Parvathaneni, Prasanna, Huo, Yuankai, Hainline, Allison, Barakovic, Muhamed, Romascano, David, Patino Lopez, Jonathan Rafael, Frigo, Matteo, Girard, Gabriel, Thiran, Jean-Philippe, Daducci, Alessandro, Rowe, Matt, Rodrigues, Paulo, Prckovska, Vesna, Aydgan, Dogu B., Sun, Wei, Shi, Yonggang, Parker, Wiliam A., Ould Ismail, Abdol A., Verma, Ragini, Cabeen, Ryan P., Toga, Arthur W., Newton, Allen T., Wasserthal, Jakob, Neher, Peter, Maier-Hein, Klaus, Savini, Giovanni, Palesi, Fulvia, Kaden, Enrico, Wu, Ye, He, Jianzhong, Feng, Yuanjing, Paquette, Michael, Rheault, Francois, Sidhu, Jasmeen, Lebel, Catherine, Leemans, Alexander, Descoteaux, Maxime, Dyrby, Tim B., Kang, Hakmook, and Landman, Bennet A.

30. A system of feed-forward cerebellar circuits that extend and diversify sensory signaling.

Author

Hariani HN, Algstam AB, Candler CT, Witteveen IF, Sidhu JK, and Balmer TS

Abstract

Sensory signals are processed by the cerebellum to coordinate movements. Numerous cerebellar functions are thought to require the maintenance of a sensory representation that extends beyond the input signal. Granule cells receive sensory input, but they do not prolong the signal and are thus unlikely to maintain a sensory representation for much longer than the inputs themselves. Unipolar brush cells (UBCs) are excitatory interneurons that project to granule cells and transform sensory input into prolonged increases or decreases in firing, depending on their ON or OFF UBC subtype. Further extension and diversification of the input signal could be produced by UBCs that project to one another, but whether this circuitry exists is unclear. Here we test whether UBCs innervate one another and explore how these small networks of UBCs could transform spiking patterns. We characterized two transgenic mouse lines electrophysiologically and immunohistochemically to confirm that they label ON and OFF UBC subtypes and crossed them together, revealing that ON and OFF UBCs innervate one another. A Brainbow reporter was used to label UBCs of the same ON or OFF subtype with different fluorescent proteins, which showed that UBCs innervate their own subtypes as well. Computational models predict that these feed-forward networks of UBCs extend the length of bursts or pauses and introduce delays-transformations that may be necessary for cerebellar functions from modulation of eye movements to adaptive learning across time scales., Competing Interests: Conflict of interest statement: The authors declare no competing financial interests.

Published
2023
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31. Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge.

Author

Nath V, Schilling KG, Parvathaneni P, Huo Y, Blaber JA, Hainline AE, Barakovic M, Romascano D, Rafael-Patino J, Frigo M, Girard G, Thiran JP, Daducci A, Rowe M, Rodrigues P, Prčkovska V, Aydogan DB, Sun W, Shi Y, Parker WA, Ould Ismail AA, Verma R, Cabeen RP, Toga AW, Newton AT, Wasserthal J, Neher P, Maier-Hein K, Savini G, Palesi F, Kaden E, Wu Y, He J, Feng Y, Paquette M, Rheault F, Sidhu J, Lebel C, Leemans A, Descoteaux M, Dyrby TB, Kang H, and Landman BA

Subjects
Diffusion Magnetic Resonance Imaging, Humans, Reference Values, Reproducibility of Results, Brain anatomy & histology, Diffusion Tensor Imaging methods
Abstract

Background: Fiber tracking with diffusion-weighted MRI has become an essential tool for estimating in vivo brain white matter architecture. Fiber tracking results are sensitive to the choice of processing method and tracking criteria., Purpose: To assess the variability for an algorithm in group studies reproducibility is of critical context. However, reproducibility does not assess the validity of the brain connections. Phantom studies provide concrete quantitative comparisons of methods relative to absolute ground truths, yet do no capture variabilities because of in vivo physiological factors. The ISMRM 2017 TraCED challenge was created to fulfill the gap., Study Type: A systematic review of algorithms and tract reproducibility studies., Subjects: Single healthy volunteers., Field Strength/sequence: 3.0T, two different scanners by the same manufacturer. The multishell acquisition included b-values of 1000, 2000, and 3000 s/mm 2 with 20, 45, and 64 diffusion gradient directions per shell, respectively., Assessment: Nine international groups submitted 46 tractography algorithm entries each consisting 16 tracts per scan. The algorithms were assessed using intraclass correlation (ICC) and the Dice similarity measure., Statistical Tests: Containment analysis was performed to assess if the submitted algorithms had containment within tracts of larger volume submissions. This also serves the purpose to detect if spurious submissions had been made., Results: The top five submissions had high ICC and Dice >0.88. Reproducibility was high within the top five submissions when assessed across sessions or across scanners: 0.87-0.97. Containment analysis shows that the top five submissions are contained within larger volume submissions. From the total of 16 tracts as an outcome relatively the number of tracts with high, moderate, and low reproducibility were 8, 4, and 4., Data Conclusion: The different methods clearly result in fundamentally different tract structures at the more conservative specificity choices. Data and challenge infrastructure remain available for continued analysis and provide a platform for comparison., Level of Evidence: 5 Technical Efficacy Stage: 1 J. Magn. Reson. Imaging 2020;51:234-249., (© 2019 International Society for Magnetic Resonance in Medicine.)

Published
2020
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