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Increased atmospheric nitrogen (N) deposition has greatly influenced soil organic carbon (SOC) dynamics. Currently, the response of SOC to atmospheric N deposition is generally detected through understory N addition, while canopy processes have been largely ignored. In the present study, canopy N addition (CN) and understory N addition (UN, 50 and 100 kg N ha−1 year−1) were performed in a Moso bamboo forest to compare whether CN and UN addition have consistent effects on SOC and SOC turnover times (τsoil: defined as the ratio of SOC stock and soil heterotrophic respiration) with a local NHx:NOy ratio of 2.08:1. The experimental results showed that after five years, the SOC content of canopy water addition without N addition (CN0) was 82.9 g C kg−1, while it was 79.3, 70.7, 79.5 and 74.5 g C kg−1 for CN50, CN100, UN50 and UN100, respectively, and no significant difference was found for the SOC content between CN and UN. Five-year N addition did not significantly change τsoil, which was 34.5 ± 7.4 (mean ± standard error) for CN0, and it was 24.9 ± 4.8, 22.4 ± 4.9, 30.5 ± 4.0 and 22.1 ± 6.5 years for CN0, CN50, CN100, UN50 and UN100, respectively. Partial least squares structural equation modeling explained 93% of the variance in τsoil, and the results showed that soil enzyme activity was the most important positive factor controlling τsoil. These findings contradicted the previous assumption that UN may overestimate the impacts of N deposition on SOC. Our findings were mainly related to the high N deposition background in the study area, the special forest type of Moso bamboo and the short duration of the experiment. Therefore, our study had significant implications for modeling SOC dynamics to N deposition for high N deposition areas.