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Over the past 60 years, scientists have strived to understand the past, present and future of the Antarctic Ice Sheet. One of the key components of this research has been the mapping of Antarctic bed topography and ice thickness parameters that are crucial for modelling ice flow and hence for predicting future ice loss and ensuing sea level rise. Supported by the Scientific Committee on Antarctic Research (SCAR), the Bedmap3 Action Group aims not only to produce new gridded maps of ice thickness and bed topography for the international scientific community, but also to standardize and make available all the geophysical survey data points used in producing the Bedmap gridded products. Here, we document the survey data used in the latest iteration, Bedmap3, incorporating and adding to all of the datasets previously used for Bedmap1 and Bedmap2, including ice-bed, surface and thickness point data from all Antarctic geophysical campaigns since the 1950s. More specifically, we describe the processes used to standardize and make these and future survey and gridded datasets accessible under the ‘Findable, Accessible, Interoperable and Reusable’ (FAIR) data principles. With the goals to make the gridding process reproducible and to allow scientists to re-use the data freely for their own analysis, we introduce the new SCAR Bedmap Data Portal (bedmap.scar.org, last access: 18 October 2022) created to provide unprecedented open access to these important datasets, through a user-friendly webmap interface. We believe that this data release will be a valuable asset to Antarctic research and will greatly extend the life cycle of the data held within it. Data are available from the UK Polar Data Centre: https://data.bas.ac.uk.

The crystal orientation fabric (COF) of a polar ice sheet has a significant effect on the rheology of the ice sheet. With the aim of better understanding the deformation regime of ice sheets, the work presented here investigates the COF in the upper 80 % of the Dome Fuji Station ice core in East Antarctica. Dielectric anisotropy (Δε) data were acquired as a novel indicator of the vertical clustering of COF resulting from vertical compressional strain within the dome. The Δε values were found to exhibit a general increase with depth, but with fluctuations over distances in the order of 10–102 m. In addition, significant decreases in Δε were found to be associated with depths corresponding to three major glacial to interglacial transitions. These changes in Δε are ascribed to variations in the deformational history caused by dislocation motion occurring from near-surface depths to deeper layers. Fluctuations in Δε over distances of less than 0.5 m exhibited a strong inverse correlation with Δε at depths greater than approximately 1200 m, indicating that they were enhanced during the glacial-interglacial transitions. The Δε data also exhibited a positive correlation with the concentration of chloride ions and an inverse correlation with the amount of dust particles in the ice core at greater depths corresponding to decreases in the degree of c axis clustering. Finally, we found that fluctuations in Δε persisted to approximately 80 % of the total depth of the ice sheet. These data suggest that the factors determining the deformation of ice include the concentration of chloride ions and the amount of dust particles, and that the layered contrast associated with the COF is preserved all the way from the near-surface to a depth corresponding to approximately 80 % of the thickness of the ice sheet. These findings provide important implications regarding further development of the COF under the various stress-strain configurations that the ice will experience in the deepest region, approximately 20 % of the total depth from the ice/bed interface.

Supplementary Data from Locked Nucleic Acid In situ Hybridization Analysis of miR-21 Expression during Colorectal Cancer Development

Supplementary Figure 3 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Figure 12 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Figure 4 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Methods, Figure Legends 1-13 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Figure 9 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Table 3 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Figure 8 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Tables S1-S2, Figures 1-7 from Frequent Loss of Brm Expression in Gastric Cancer Correlates with Histologic Features and Differentiation State

The mammalian SWI/SNF chromatin remodeling complex, an essential epigenetic regulator, contains either a single Brm or BRG1 molecule as its catalytic subunit. We observed frequent loss of Brm expression but not of BRG1 in human gastric cancer cell lines. Treatment with histone deacetylase inhibitor rescued Brm expression, indicating epigenetic regulation of this gene, and an RNA interference–based colony formation assay revealed antioncogenic properties of Brm. Brm immunostaining of 89 primary gastric cancers showed an obvious reduction in 60 cases (67%) and a severe decrease in 37 cases (42%). Loss of Brm is frequent in the major gastric cancer types (well- or moderately-differentiated tubular adenocarcinoma and poorly-differentiated adenocarcinoma) and positively correlates with the undifferentiated state. Among the minor gastric cancer types, Brm expression persists in signet-ring cell carcinoma and mucinous adenocarcinoma, but a marked decrease is observed in papillary adenocarcinoma. Intestinal metaplasia never shows decreased expression, indicating that Brm is a valid marker of gastric oncogenesis. In contrast, BRG1 is retained in most cases; a concomitant loss of BRG1 and Brm is rare in gastric cancer, contrary to other malignancies. We further show that Brm is required for villin expression, a definitive marker of intestinal metaplasia and differentiation. Via regulating such genes important for gut differentiation, Brm should play significant roles in determining the histologic features of gastric malignancy. [Cancer Res 2007;67(22):10727–35]

Supplementary Figure 2 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Figure 5 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Figure 7 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Figure 6 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Table 1 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

Supplementary Table 2 from MicroRNAs miR-199a-5p and -3p Target the Brm Subunit of SWI/SNF to Generate a Double-Negative Feedback Loop in a Variety of Human Cancers

The chromatin remodeling complex SWI/SNF is an important epigenetic regulator that includes one Brm or BRG1 molecule as catalytic subunit. Brm and BRG1 do not function identically, so this complex can regulate gene expression either positively or negatively, depending on the promoter to which it is recruited. Notably, Brm attenuation due to posttranscription suppression occurs often in human tumor cells, in which this event contributes to their oncogenic potential. Here, we report that the 3′-untranslated region of Brm mRNA has two sites that are efficiently targeted by the microRNAs miR-199a-5p and -3p, revealing a novel mechanism for modulation of Brm-type SWI/SNF activity. Computational mapping of the putative promoter region of miR-199a-2 (miPPR-199a-2) has defined it as the major contributing genetic locus for miR-199a-5p and-3p production in these tumor cell lines. We validated this predicted region by direct promoter analysis to confirm that Egr1 is a strong positive regulator of the miR-199a-2 gene. Importantly, we also showed that Egr1, miR-199a-5p, and miR-199a-3p are expressed at high levels in Brm-deficient tumor cell lines but only marginally in Brm-expressing tumor cells. Finally, we also obtained evidence that Brm negatively regulates Egr1. Together, our results reveal that miR-199a and Brm form a double-negative feedback loop through Egr1, leading to the generation of these two distinct cell types during carcinogenesis. This mechanism may offer a partial explanation for why miR-199a-5p and -3p have been reported to be either upregulated or downregulated in a variety of tumors. Cancer Res; 71(5); 1680–9. ©2010 AACR.

We reconstructed surface mass balance (SMB) around Dome Fuji, Antarctica, over the last 5000 years using the data from 15 shallow ice cores and seven snow pits. The depth–age relationships for the ice cores were determined by synchronizing them with a layer-counted ice core from West Antarctica (WAIS Divide ice core) using volcanic signals. The reconstructed SMB records for the last 4000 years show spatial patterns that may be affected by their locations relative to the ice divides around Dome Fuji, proximity to the ocean, and wind direction. The SMB records from the individual ice cores and snow pits were stacked to reconstruct the SMB history in the Dome Fuji area. The stacked record exhibits a long-term decreasing trend at -0.037±0.005 kg m−2 per century over the last 5000 years in the preindustrial period. The decreasing trend may be the result of long-term surface cooling over East Antarctica and the Southern Ocean and sea ice expansion in the water vapor source areas. The multidecadal to centennial variations of the Dome Fuji SMB after detrending the record shows four distinct periods during the last millennium: a mostly negative period before 1300 CE, a slightly positive period from 1300 to 1450 CE, a slightly negative period from 1450 to 1850 CE with a weak maximum around 1600 CE, and a strong increase after 1850 CE. These variations are consistent with those of previously reconstructed SMB records in the East Antarctic plateau. The low accumulation rate periods tend to coincide with the combination of strong volcanic forcings and solar minima for the last 1000 years, but the correspondence is not clear for the older periods, possibly because of the lack of coincidence of volcanic and solar forcings or the deterioration of the SMB record due to a smaller number of stacked cores.

The variations of δO2/N2 and δAr/N2 in the Dome Fuji ice core were measured from 112 m (bubbly ice) to 2001 m (clathrate hydrate ice). Our method, combined with the low storage temperature of the samples (−50 ∘C), successfully excludes post-coring gas-loss fractionation signals from our data. From the bubbly ice to the middle of the bubble–clathrate transition zone (BCTZ) (112–800 m) and below the BCTZ (>1200 m), the δO2/N2 and δAr/N2 data exhibit orbital-scale variations similar to local summer insolation. The data in the lower BCTZ (800–1200 m) have large scatter, which may be caused by millimeter-scale inhomogeneity of air composition combined with finite sample lengths. The insolation signal originally recorded at the bubble close-off remains through the BCTZ, and the insolation signal may be reconstructed by analyzing long ice samples (more than 50 cm for the Dome Fuji core). In the clathrate hydrate zone, the scatter around the orbital-scale variability decreases with depth, indicating diffusive smoothing of δO2/N2 and δAr/N2. A simple gas diffusion model was used to reproduce the smoothing and thus constrain their permeation coefficients. The relationship between δAr/N2 and δO2/N2 is markedly different for the datasets representing bubble close-off (slope ∼ 0.5), bubble–clathrate hydrate transformation (∼1), and post-coring gas loss (∼0.2), suggesting that the contributions of the mass-independent and mass-dependent fractionation processes are different for those cases. The method and data presented here may be useful for improving the orbital dating of deep ice cores over the multiple glacial cycles and further studying non-insolation-driven signals (e.g., atmospheric composition) of these gases.

The 13th Symposium on Polar Science/Ordinary sessions [OM] Polar meteorology and glaciology, Wed. 16 Nov.

The 13th Symposium on Polar Science/Ordinary sessions [OM] Polar meteorology and glaciology, Wed. 16 Nov.

The 13th Symposium on Polar Science/Ordinary sessions [OM] Polar meteorology and glaciology, Wed. 16 Nov.

The 13th Symposium on Polar Science/Ordinary sessions [OM] Polar meteorology and glaciology, Wed. 16 Nov.

The 13th Symposium on Polar Science/Ordinary sessions [OM] Polar meteorology and glaciology, Wed. 16 Nov.

The recovery of a new Antarctic ice core spanning the last ~1.5 million years will advance our understanding of climate system dynamics during the Quaternary. Recent glaciological field surveys have been conducted to select the most suitable core location near Dome Fuji (DF), Antarctica. Specifically, ground-based radar-echo soundings have been used to acquire highly detailed images of bedrock topography and internal ice layers. In this study, we use a one-dimensional (1-D) ice flow model to compute the temporal evolutions of age and temperature, in which the ice flow is linked with not only transient climate forcing associated with past glacial‒interglacial cycles, but also transient basal melting diagnosed along the evolving temperature profile. We investigated the influence of ice thickness, accumulation rate, and geothermal heat flux on the age and temperature profiles. The model was constrained by the observed temperature and age profiles reconstructed from DF ice‒core analysis. The results of sensitivity experiments indicate that ice thickness is the most crucial parameter influencing the computed age of the ice because it is critical to the history of basal temperature and basal melting, which can eliminate old ice. The 1-D model was applied to a 54 km long transect in the vicinity of DF and compared with radargram data. We found that the basal age of the ice is mostly controlled by the local ice thickness, demonstrating the importance of high spatial resolution surveys of bedrock topography for selecting ice-core drilling sites.

We reconstructed surface mass balance (SMB) around Dome Fuji, Antarctica, over the last 5000 years using the data from 15 shallow ice cores and 7 snow pits. The depth-age relationships for the ice cores were determined by synchronizing them with a layer-counted ice core from West Antarctica (WAIS Divide ice core) using volcanic signals. The reconstructed SMB records for the last 4000 years show spatial patterns that may be affected by their locations relative to the ice divides around Dome Fuji, proximity to the ocean, and wind direction. The SMB records from the individual ice cores and snow pits were stacked to reconstruct the SMB history in the Dome Fuji area. The stacked record exhibits a long-term decreasing trend at −0.037±0.005 kg m-2 per century over the last 5000 years in the preindustrial period. The decreasing trend may be the result of long-term surface cooling over East Antarctica and the Southern Ocean, and sea-ice expansion in the water vapor source areas. The multidecadal to centennial variations of the Dome Fuji SMB after detrending the record shows four distinct periods during the last millennium: mostly negative period before 1300 C.E., slightly positive for 1300–1450 C.E., slightly negative for 1450–1850 C.E. with a weak maximum around 1600 C.E., and strong increase after 1850 C.E. These variations are consistent with those of previously reconstructed SMB records in the East Antarctic plateau. The low accumulation rate periods tend to coincide with the combination of strong volcanic forcings and solar minima for the last 1000 years, but the correspondence is not clear for the older periods, possibly because of the lack of coincidence of volcanic and solar forcings, or the deterioration of the SMB record due to smaller number of stacked cores.

Polycrystalline ice is known to exhibit macroscopic anisotropy in relative permittivity (ɛ) depending on the crystal orientation fabric (COF). Using a new system designed to measure the tensorial components of ɛ, we investigated the dielectric anisotropy (Δɛ) of a deep ice core sample obtained from Dome Fuji, East Antarctica. This technique permits the continuous nondestructive assessment of the COF in thick ice sections. Measurements of vertical prism sections along the core showed that the Δɛ values in the vertical direction increased with increasing depth, supporting previous findings of c-axis clustering around the vertical direction. Analyses of horizontal disk sections demonstrated that the magnitude of Δɛ in the horizontal plane was 10–15% of that in the vertical plane. In addition, the directions of the principal axes of tensorial ɛ in the horizontal plane corresponded to the long or short axis of the elliptically elongated single-pole maximum COF. The data confirmed that Δɛ in the vertical and horizontal planes adequately indicated the preferred orientations of the c-axes, and that Δɛ can be considered to represent a direct substitute for the normalized COF eigenvalues. This new method could be extremely useful as a means of investigating continuous and depth-dependent variations in COF.