219 results on '"Shine JM"'
Search Results
2. Brainhack: Developing a culture of open, inclusive, community-driven neuroscience
- Author
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Gau, R, Noble, S, Heuer, K, Bottenhorn, KL, Bilgin, IP, Yang, YF, Huntenburg, JM, Bayer, JMM, Bethlehem, RAI, Rhoads, SA, Vogelbacher, C, Borghesani, V, Levitis, E, Wang, HT, Van Den Bossche, S, Kobeleva, X, Legarreta, JH, Guay, S, Atay, SM, Varoquaux, GP, Huijser, DC, Sandström, MS, Herholz, P, Nastase, SA, Badhwar, AP, Dumas, G, Schwab, S, Moia, S, Dayan, M, Bassil, Y, Brooks, PP, Mancini, M, Shine, JM, O'Connor, D, Xie, X, Poggiali, D, Friedrich, P, Heinsfeld, AS, Riedl, L, Toro, R, Caballero-Gaudes, C, Eklund, A, Garner, KG, Nolan, CR, Demeter, DV, Barrios, FA, Merchant, JS, McDevitt, EA, Oostenveld, R, Craddock, RC, Rokem, A, Doyle, A, Ghosh, SS, Nikolaidis, A, Stanley, OW, Uruñuela, E, Anousheh, N, Arnatkeviciute, A, Auzias, G, Bachar, D, Bannier, E, Basanisi, R, Basavaraj, A, Bedini, M, Bellec, P, Benn, RA, Berluti, K, Bollmann, S, Bradley, C, Brown, J, Buchweitz, A, Callahan, P, Chan, MY, Chandio, BQ, Cheng, T, Chopra, S, Chung, AW, Close, TG, Combrisson, E, Cona, G, Constable, RT, Cury, C, Dadi, K, Damasceno, PF, Das, S, De Vico Fallani, F, DeStasio, K, Dickie, EW, Dorfschmidt, L, Duff, EP, DuPre, E, Dziura, S, Esper, NB, Esteban, O, Fadnavis, S, Flandin, G, Flannery, JE, Flournoy, J, Forkel, SJ, Gau, R, Noble, S, Heuer, K, Bottenhorn, KL, Bilgin, IP, Yang, YF, Huntenburg, JM, Bayer, JMM, Bethlehem, RAI, Rhoads, SA, Vogelbacher, C, Borghesani, V, Levitis, E, Wang, HT, Van Den Bossche, S, Kobeleva, X, Legarreta, JH, Guay, S, Atay, SM, Varoquaux, GP, Huijser, DC, Sandström, MS, Herholz, P, Nastase, SA, Badhwar, AP, Dumas, G, Schwab, S, Moia, S, Dayan, M, Bassil, Y, Brooks, PP, Mancini, M, Shine, JM, O'Connor, D, Xie, X, Poggiali, D, Friedrich, P, Heinsfeld, AS, Riedl, L, Toro, R, Caballero-Gaudes, C, Eklund, A, Garner, KG, Nolan, CR, Demeter, DV, Barrios, FA, Merchant, JS, McDevitt, EA, Oostenveld, R, Craddock, RC, Rokem, A, Doyle, A, Ghosh, SS, Nikolaidis, A, Stanley, OW, Uruñuela, E, Anousheh, N, Arnatkeviciute, A, Auzias, G, Bachar, D, Bannier, E, Basanisi, R, Basavaraj, A, Bedini, M, Bellec, P, Benn, RA, Berluti, K, Bollmann, S, Bradley, C, Brown, J, Buchweitz, A, Callahan, P, Chan, MY, Chandio, BQ, Cheng, T, Chopra, S, Chung, AW, Close, TG, Combrisson, E, Cona, G, Constable, RT, Cury, C, Dadi, K, Damasceno, PF, Das, S, De Vico Fallani, F, DeStasio, K, Dickie, EW, Dorfschmidt, L, Duff, EP, DuPre, E, Dziura, S, Esper, NB, Esteban, O, Fadnavis, S, Flandin, G, Flannery, JE, Flournoy, J, and Forkel, SJ
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- 2021
3. Reducing the influence of intramodular connectivity in participation coefficient
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Pedersen, M, Omidvarnia, A, Shine, JM, Jackson, GD, Zalesky, A, Pedersen, M, Omidvarnia, A, Shine, JM, Jackson, GD, and Zalesky, A
- Abstract
Both natural and engineered networks are often modular. Whether a network node interacts with only nodes from its own module or nodes from multiple modules provides insight into its functional role. The participation coefficient (PC) is typically used to measure this attribute, although its value also depends on the size and connectedness of the module it belongs to and may lead to nonintuitive identification of highly connected nodes. Here, we develop a normalized PC that reduces the influence of intramodular connectivity compared with the conventional PC. Using brain, C. elegans, airport, and simulated networks, we show that our measure of participation is not influenced by the size or connectedness of modules, while preserving conceptual and mathematical properties, of the classic formulation of PC. Unlike the conventional PC, we identify London and New York as high participators in the air traffic network and demonstrate stronger associations with working memory in human brain networks, yielding new insights into nodal participation across network modules.
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- 2020
4. Intracranial electrical stimulation alters meso-scale network integration as a function of network topology
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Thompson, WH, primary, Esteban, O, additional, Oya, H, additional, Nair, R, additional, Eberhardt, F, additional, Dubois, J, additional, Poldrack, RA, additional, Adolphs, R, additional, and Shine, JM, additional
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- 2021
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5. Human es-fMRI Resource: Concurrent deep-brain stimulation and whole-brain functional MRI
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Thompson, WH, primary, Nair, R, additional, Oya, H, additional, Esteban, O, additional, Shine, JM, additional, Petkov, CI, additional, Poldrack, RA, additional, Howard, M, additional, and Adolphs, R, additional
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- 2020
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6. Prediction of freezing of gait in patients with Parkinson’s disease using EEG signals
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Handojoseno, AMA, Naik, GR, Gilat, M, Shine, JM, Nguyen, TN, Quynh, TLY, Lewis, SJG, and Nguyen, HT
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Male ,Quality of Life ,Humans ,Parkinson Disease ,Electroencephalography ,Bayes Theorem ,Female ,Middle Aged ,Gait ,Medical Informatics ,Gait Disorders, Neurologic ,Aged - Abstract
© 2018 The authors and IOS Press. All rights reserved. Freezing of gait (FOG) is an episodic gait disturbance affecting initiation and continuation of locomotion in many Parkinson’s disease (PD) patients, causing falls and a poor quality of life. FOG can be experienced on turning and start hesitation, passing through doorways or crowded areas dual tasking, and in stressful situations. Electroencephalography (EEG) offers an innovative technique that may be able to effectively foresee an impending FOG. From data of 16 PD patients, using directed transfer function (DTF) and independent component analysis (ICA) as data pre-processing, and an optimal Bayesian neural network as a predictor of a transition of 5 seconds before the impending FOG occurs in 11 in-group PD patients, we achieved sensitivity and specificity of 85.86% and 80.25% respectively in the test set (5 out-group PD patients). This study therefore contributes to the development of a non-invasive device to prevent freezing of gait in PD.
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- 2018
7. Time-varying nodal measures with temporal community structure: a cautionary note to avoid misinterpretation
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Thompson, WH, primary, Kastrati, G, additional, Finc, K, additional, Wright, J, additional, Shine, JM, additional, and Poldrack, RA, additional
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- 2019
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8. Evidence for Subtypes of Freezing of Gait in Parkinson's Disease
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Martens, KAE, Shine, JM, Walton, CC, Georgiades, MJ, Gilat, M, Hall, JM, Muller, AJ, Szeto, JYY, Lewis, SJG, Martens, KAE, Shine, JM, Walton, CC, Georgiades, MJ, Gilat, M, Hall, JM, Muller, AJ, Szeto, JYY, and Lewis, SJG
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- 2018
9. Cognitive training for freezing of gait in Parkinson's disease: a randomized controlled trial
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Walton, CC, Mowszowski, L, Gilat, M, Hall, JM, O'Callaghan, C, Muller, AJ, Georgiades, M, Szeto, JYY, Martens, KAE, Shine, JM, Naismith, SL, Lewis, SJG, Walton, CC, Mowszowski, L, Gilat, M, Hall, JM, O'Callaghan, C, Muller, AJ, Georgiades, M, Szeto, JYY, Martens, KAE, Shine, JM, Naismith, SL, and Lewis, SJG
- Abstract
The pathophysiological mechanism of freezing of gait (FoG) has been linked to executive dysfunction. Cognitive training (CT) is a non-pharmacological intervention which has been shown to improve executive functioning in Parkinson’s disease (PD). This study aimed to explore whether targeted CT can reduce the severity of FoG in PD. Patients with PD who self-reported FoG and were free from dementia were randomly allocated to receive either a CT intervention or an active control. Both groups were clinician-facilitated and conducted twice-weekly for seven weeks. The primary outcome was percentage of time spent frozen during a Timed Up and Go task, assessed both on and off dopaminergic medications. Secondary outcomes included multiple neuropsychological and psychosocial measures. A full analysis was first conducted on all participants randomized, followed by a sample of interest including only those who had objective FoG at baseline, and completed the intervention. Sixty-five patients were randomized into the study. The sample of interest included 20 in the CT group and 18 in the active control group. The primary outcome of percentage time spent frozen during a gait task was significantly improved in the CT group compared to active controls in the on-state. There were no differences in the off-state. Patients who received CT also demonstrated improved processing speed and reduced daytime sleepiness compared to those in the active control. The findings suggest that CT can reduce the severity of FoG in the on-state, however replication in a larger sample is required.
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- 2018
10. Prediction of freezing of gait using analysis of brain effective connectivity
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Handojoseno, AMA, Shine, JM, Gilat, M, Nguyen, TN, Tran, Y, Lewis, SJG, and Nguyen, HT
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Aged, 80 and over ,genetic structures ,Multivariate Analysis ,Video Recording ,Brain ,Humans ,Parkinson Disease ,Electroencephalography ,Bayes Theorem ,Gait ,Algorithms ,Aged - Abstract
© 2014 IEEE. Freezing of gait (FOG) is a debilitating symptom of Parkinson's disease (PD), in which patients experience sudden difficulties in starting or continuing locomotion. It is described by patients as the sensation that their feet are suddenly glued to the ground. This, disturbs their balance, and hence often leads to falls. In this study, directed transfer function (DTF) and partial directed coherence (PDC) were used to calculate the effective connectivity of neural networks, as the input features for systems that can detect FOG based on a Multilayer Perceptron Neural Network, as well as means for assessing the causal relationships in neurophysiological neural networks during FOG episodes. The sensitivity, specificity and accuracy obtained in subject dependent analysis were 82%, 77%, and 78%, respectively. This is a significant improvement compared to previously used methods for detecting FOG, bringing this detection system one step closer to a final version that can be used by the patients to improve their symptoms.
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- 2014
11. The relationships between mild cognitive impairment and phenotype in Parkinson's disease
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Szeto, JYY, O'Callaghan, C, Shine, JM, Walton, CC, Mowszowski, L, Naismith, SL, Halliday, GM, Lewis, SJG, Szeto, JYY, O'Callaghan, C, Shine, JM, Walton, CC, Mowszowski, L, Naismith, SL, Halliday, GM, and Lewis, SJG
- Abstract
BACKGROUND: The concept of differing clinical phenotypes within Parkinson's disease (PD) is well represented in the literature. However, there is no consensus as to whether any particular disease phenotype is associated with an increased risk of mild cognitive impairment (MCI) using the newly proposed Movement Disorders Society diagnostic criteria for this feature. AIMS: To explore the expression of PD-MCI in relation to the heterogeneity of idiopathic PD. METHODS: A cluster analysis incorporating a range of specific demographic, clinical and cognitive variables was performed on 209 patients in the early stages of PD (between Hoehn and Yahr stages I-III). Post hoc analyses exploring variables not included in the clustering solution were performed to interrogate the veracity of the subgroups generated. RESULTS: This study identified four distinct PD cohorts: a younger disease-onset subgroup, a tremor dominant subgroup, a non-tremor dominant subgroup, and a subgroup with rapid disease progression. The present study identified a differential expression of PD-MCI across these subgroups, with the highest frequency observed in the non-tremor dominant cluster. The non-tremor dominant subgroup was also associated with a higher prevalence of freezing of gait, hallucinations, daytime somnolence, and rapid eye movement sleep behavior disorder compared with other subgroups. CONCLUSIONS: This study confirms the existence of heterogeneity within the early clinical stages of PD and for the first time highlights the differential expression of PD-MCI using the newly defined diagnostic criteria for this feature. An improved understanding of PD-MCI and its clinical relationships may lead to an improved understanding of the pathophysiology underlying heterogeneity in PD.
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- 2015
12. Brain activation underlying turning in Parkinson's disease patients with and without freezing of gait: a virtual reality fMRI study
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Gilat, M, Shine, JM, Walton, CC, O'Callaghan, C, Hall, JM, Lewis, SJG, Gilat, M, Shine, JM, Walton, CC, O'Callaghan, C, Hall, JM, and Lewis, SJG
- Abstract
BACKGROUND: Freezing of gait is a debilitating symptom affecting many patients with Parkinson's disease (PD), causing severe immobility and decreased quality of life. Turning is known to be the most common trigger for freezing and also causes the highest rates of falls. However, the pathophysiological basis for these effects is not well understood. METHODS: This study used a virtual reality paradigm in combination with functional magnetic resonance imaging to explore the neural correlates underlying turning in 17 PD patients with freezing of gait (FOG) and 10 PD patients without FOG while off their dopaminergic medication. Participants used foot pedals to navigate a virtual environment, which allowed for blood oxygen level-dependent (BOLD) responses and footstep latencies to be compared between periods of straight "walking" and periods of turning through 90°. BOLD data were then analyzed using a mixed effects analysis. RESULTS: Within group similarities revealed that overall, PD patients with freezing relied heavily on cortical control to enable effective stepping with increased visual cortex activation during turning. Between groups differences showed that when turning, patients with freezing preferentially activated inferior frontal regions that have been implicated in the recruitment of a putative stopping network. In addition, freezers failed to activate premotor and superior parietal cortices. Finally, increased task-based functional connectivity was found in subcortical regions associated with gait and stopping within the freezers group during turning. CONCLUSIONS: These findings suggest that an increased propensity towards stopping in combination with reduced sensorimotor integration may underlie the neurobiology of freezing of gait during turning.
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- 2015
13. Analysis and prediction of the freezing of gait using EEG brain dynamics
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Ardi Handojoseno, AM, Shine, JM, Nguyen, TN, Tran, Y, Lewis, SJG, Nguyen, HT, Ardi Handojoseno, AM, Shine, JM, Nguyen, TN, Tran, Y, Lewis, SJG, and Nguyen, HT
- Abstract
© 2014 IEEE. Freezing of Gait (FOG) is a common symptom in the advanced stages of Parkinson's disease (PD), which significantly affects patients' quality of life. Treatment options offer limited benefit and there are currently no mechanisms able to effectively detect FOG before it occurs, allowing time for a sufferer to avert a freezing episode. Electroencephalography (EEG) offers a novel technique that may be able to address this problem. In this paper, we investigated the univariate and multivariate EEG features determined by both Fourier and wavelet analysis in the confirmation and prediction of FOG. The EEG power measures and network properties from 16 patients with PD and FOG were extracted and analyzed. It was found that both power spectral density and wavelet energy could potentially act as biomarkers during FOG. Information in the frequency domain of the EEG was found to provide better discrimination of EEG signals during transition to freezing than information coded in the time domain. The performance of the FOG prediction systems improved when the information from both domains was used. This combination resulted in a sensitivity of 86.0%, specificity of 74.4%, and accuracy of 80.2% when predicting episodes of freezing, outperforming current accelerometry- based tools for the prediction of FOG.
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- 2015
14. An EEG study of turning freeze in Parkinson's disease patients: The alteration of brain dynamic on the motor and visual cortex
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Handojoseno, AMA, Gilat, M, Ly, QT, Chamtie, H, Shine, JM, Nguyen, TN, Tran, Y, Lewis, SJG, Nguyen, HT, Handojoseno, AMA, Gilat, M, Ly, QT, Chamtie, H, Shine, JM, Nguyen, TN, Tran, Y, Lewis, SJG, and Nguyen, HT
- Abstract
© 2015 IEEE. Freezing of gait is a very debilitating symptom affecting many patients with Parkinson's disease, leading to a reduced mobility and increased risk for falls. Turning is known to be the most provocative trigger for freezing of gait. However, the underlying brain dynamic changes associated with a turning freeze remain unknown. This study therefore used ambulatory EEG to investigate the brain dynamic changes associated with freezing of gait during turning. In addition, this study aimed to determine the most suitable EEG sensor location to detect freezing of gait during turning using our classification system. Data from four Parkinson's disease patients with freezing of gait was analysed using power spectral density and brain effective connectivity, comparing periods of successful turning with freezing of gait during turning. Results showed that freezing of gait during turning is associated with significant alterations in the high beta and theta power spectral densities across the occipital and parietal areas. Furthermore, brain effective connectivity showed that freezing during turning was associated with increased connectivity towards the visual area, which also had the highest accuracy to detect freezing episodes in the O1 regions by using power spectral density in our classification analyses. This is the first study to show cortical dynamic changes associated with freezing of gait during turning, providing valuable information to enhance the performance of future freezing of gait detection systems.
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- 2015
15. Abnormal patterns of theta frequency oscillations during the temporal evolution of freezing of gait in parkinson's disease
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Shine, JM, Handojoseno, AMA, Nguyen, TN, Tran, Y, Naismith, SL, Nguyen, H, and Lewis, SJG
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Aged, 80 and over ,Male ,Neurology & Neurosurgery ,Fourier Analysis ,Parkinson Disease ,Walking ,Middle Aged ,Temporal Lobe ,Humans ,Female ,Theta Rhythm ,human activities ,Gait ,Gait Disorders, Neurologic ,Aged - Abstract
Objective: We sought to characterize the electrophysiological signature of Freezing of gait in Parkinson's disease. Methods: We examined 24 patients with idiopathic Parkinson's disease and significant freezing of gait as they performed a series of timed up-and-go tasks in their 'off' state while electroencephalographic data was collected from four scalp leads. Fast Fourier Transformation was utilized to explore the power spectral density between periods of normal walking and periods of freezing, as well as during the transition between the two states. In addition, Cross Spectrum and Cross Frequency analyses were used to explore the role of impaired temporal and spatial connectivity. Results: When compared to walking, episodes of freezing were associated with a significant increase in theta band power within the central and frontal leads. The transition from normal walking to freezing of gait was also associated with increased theta frequency coupling between the central and frontal leads, along with an increase in cross-frequency coupling in the central lead. Conclusions: Episodes of freezing of gait in Parkinson's disease are associated with abnormal oscillatory activity in the brain. Significance: These results provide novel insights into the pattern of spatiotemporal dynamics underlying freezing of gait and may provide a potential means for therapeutic prediction and alleviation of freezing episodes in susceptible patients. © 2013.
- Published
- 2013
16. Using EEG spatial correlation, cross frequency energy, and wavelet coefficients for the prediction of Freezing of Gait in Parkinson's Disease patients
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Handojoseno, AMA, Shine, JM, Nguyen, TN, Tran, Y, Lewis, SJG, and Nguyen, HT
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genetic structures ,Wavelet Analysis ,Humans ,Parkinson Disease ,Electroencephalography ,Signal Processing, Computer-Assisted ,Walking ,Gait ,Aged - Abstract
Parkinson's Disease (PD) patients with Freezing of Gait (FOG) often experience sudden and unpredictable failure in their ability to start or continue walking, making it potentially a dangerous symptom. Emerging knowledge about brain connectivity is leading to new insights into the pathophysiology of FOG and has suggested that electroencephalogram (EEG) may offer a novel technique for understanding and predicting FOG. In this study we have integrated spatial, spectral, and temporal features of the EEG signals utilizing wavelet coefficients as our input for the Multilayer Perceptron Neural Network and k-Nearest Neighbor classifier. This approach allowed us to predict transition from walking to freezing with 87 % sensitivity and 73 % accuracy. This preliminary data affirms the functional breakdown between areas in the brain during FOG and suggests that EEG offers potential as a therapeutic strategy in advanced PD. © 2013 IEEE.
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- 2013
17. Abnormal patterns of theta frequency oscillations during the temporal evolution of freezing of gait in parkinson's disease
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Shine, JM, Handojoseno, AMA, Nguyen, TN, Tran, Y, Naismith, SL, Nguyen, H, Lewis, SJG, Shine, JM, Handojoseno, AMA, Nguyen, TN, Tran, Y, Naismith, SL, Nguyen, H, and Lewis, SJG
- Abstract
Objective: We sought to characterize the electrophysiological signature of Freezing of gait in Parkinson's disease. Methods: We examined 24 patients with idiopathic Parkinson's disease and significant freezing of gait as they performed a series of timed up-and-go tasks in their 'off' state while electroencephalographic data was collected from four scalp leads. Fast Fourier Transformation was utilized to explore the power spectral density between periods of normal walking and periods of freezing, as well as during the transition between the two states. In addition, Cross Spectrum and Cross Frequency analyses were used to explore the role of impaired temporal and spatial connectivity. Results: When compared to walking, episodes of freezing were associated with a significant increase in theta band power within the central and frontal leads. The transition from normal walking to freezing of gait was also associated with increased theta frequency coupling between the central and frontal leads, along with an increase in cross-frequency coupling in the central lead. Conclusions: Episodes of freezing of gait in Parkinson's disease are associated with abnormal oscillatory activity in the brain. Significance: These results provide novel insights into the pattern of spatiotemporal dynamics underlying freezing of gait and may provide a potential means for therapeutic prediction and alleviation of freezing episodes in susceptible patients. © 2013.
- Published
- 2014
18. The detection of Freezing of Gait in Parkinson's disease patients using EEG signals based on Wavelet decomposition
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Handojoseno, AMA, Shine, JM, Nguyen, TN, Tran, Y, Lewis, SJG, Nguyen, HT, Handojoseno, AMA, Shine, JM, Nguyen, TN, Tran, Y, Lewis, SJG, and Nguyen, HT
- Abstract
Freezing of Gait (FOG) is one of the most disabling gait disturbances of Parkinson's disease (PD). The experience has often been described as feeling like their feet have been glued to the floor while trying to walk and as such it is a common cause of falling in PD patients. In this paper, EEG subbands Wavelet Energy and Total Wavelet Entropy were extracted using the multiresolution decomposition of EEG signal based on the Discrete Wavelet Transform and were used to analyze the dynamics in the EEG during freezing. The Back Propagation Neural Network classifier has the ability to identify the onset of freezing of PD patients during walking using these features with average values of accuracy, sensitivity and specificity are around 75 %. This results have proved the feasibility of utilized EEG in future treatment of FOG. © 2012 IEEE.
- Published
- 2012
19. The detection of freezing of gait in Parkinson's Disease patients using EEG signals based on wavelet decomposition
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Khoo, MCK, Handojoseno, AM, Shine, JM, Nguyen, N, Tran, YH, Lewis, S, Nguyen, HT, Khoo, MCK, Handojoseno, AM, Shine, JM, Nguyen, N, Tran, YH, Lewis, S, and Nguyen, HT
- Abstract
Freezing of Gait (FOG) is one of the most disabling gait disturbances of Parkinsonâs disease (PD). The experience has often been described as â feeling like their feet have been glued to the floor while trying to walkâ and as such it is a common cause of falling in PD patients. In this paper, EEG subbands Wavelet Energy and Total Wavelet Entropy were extracted using the multiresolution decomposition of EEG signal based on the Discrete Wavelet Transform and were used to analyze the dynamics in the EEG during freezing. The Back Propagation Neural Network classifier has the ability to identify the onset of freezing of PD patients during walking using these features with average values of accuracy, sensitivity and specificity are around 75 %. This results have proved the feasibility of utilized EEG in future treatment of FOG.
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- 2012
20. Assessing the utility of Freezing of Gait Questionnaires in Parkinson's Disease.
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Shine JM, Moore ST, Bolitho SJ, Morris TR, Dilda V, Naismith SL, and Lewis SJ
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- 2012
21. Multiscale organization of neuronal activity unifies scale-dependent theories of brain function.
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Munn BR, Müller EJ, Favre-Bulle I, Scott E, Lizier JT, Breakspear M, and Shine JM
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- Animals, Mice, Calcium metabolism, Macaca, Models, Neurological, Drosophila physiology, Brain physiology, Neurons physiology, Zebrafish physiology, Caenorhabditis elegans physiology
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Brain recordings collected at different resolutions support distinct signatures of neural coding, leading to scale-dependent theories of brain function. Here, we show that these disparate signatures emerge from a heavy-tailed, multiscale functional organization of neuronal activity observed across calcium-imaging recordings collected from the whole brains of zebrafish and C. elegans as well as from sensory regions in Drosophila, mice, and macaques. Network simulations demonstrate that this conserved hierarchical structure enhances information processing. Finally, we find that this organization is maintained despite significant cross-scale reconfiguration of cellular coordination during behavior. Our findings suggest that this nonlinear organization of neuronal activity is a universal principle conserved for its ability to adaptively link behavior to neural dynamics across multiple spatiotemporal scales while balancing functional resiliency and information processing efficiency., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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22. Integrating brainstem and cortical functional architectures.
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Hansen JY, Cauzzo S, Singh K, García-Gomar MG, Shine JM, Bianciardi M, and Misic B
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- Humans, Male, Female, Adult, Neural Pathways physiology, Young Adult, Brain Mapping, Nerve Net physiology, Nerve Net diagnostic imaging, Brain Stem physiology, Cerebral Cortex physiology, Magnetic Resonance Imaging methods, Connectome
- Abstract
The brainstem is a fundamental component of the central nervous system, yet it is typically excluded from in vivo human brain mapping efforts, precluding a complete understanding of how the brainstem influences cortical function. In this study, we used high-resolution 7-Tesla functional magnetic resonance imaging to derive a functional connectome encompassing cortex and 58 brainstem nuclei spanning the midbrain, pons and medulla. We identified a compact set of integrative hubs in the brainstem with widespread connectivity with cerebral cortex. Patterns of connectivity between brainstem and cerebral cortex manifest as neurophysiological oscillatory rhythms, patterns of cognitive functional specialization and the unimodal-transmodal functional hierarchy. This persistent alignment between cortical functional topographies and brainstem nuclei is shaped by the spatial arrangement of multiple neurotransmitter receptors and transporters. We replicated all findings using 3-Tesla data from the same participants. Collectively, this work demonstrates that multiple organizational features of cortical activity can be traced back to the brainstem., Competing Interests: Competing interests: The authors declare no competing interests., (© 2024. The Author(s).)
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- 2024
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23. Tonic and burst-like locus coeruleus stimulation distinctly shift network activity across the cortical hierarchy.
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Grimm C, Duss SN, Privitera M, Munn BR, Karalis N, Frässle S, Wilhelm M, Patriarchi T, Razansky D, Wenderoth N, Shine JM, Bohacek J, and Zerbi V
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- Animals, Mice, Male, Norepinephrine metabolism, Magnetic Resonance Imaging, Mice, Inbred C57BL, Neurons physiology, Female, Neural Pathways physiology, Locus Coeruleus physiology, Cerebral Cortex physiology, Optogenetics, Nerve Net physiology
- Abstract
Noradrenaline (NA) release from the locus coeruleus (LC) changes activity and connectivity in neuronal networks across the brain, modulating multiple behavioral states. NA release is mediated by both tonic and burst-like LC activity. However, it is unknown whether the functional changes in target areas depend on these firing patterns. Using optogenetics, photometry, electrophysiology and functional magnetic resonance imaging in mice, we show that tonic and burst-like LC firing patterns elicit brain responses that hinge on their distinct NA release dynamics. During moderate tonic LC activation, NA release engages regions associated with associative processing, while burst-like stimulation biases the brain toward sensory processing. These activation patterns locally couple with increased astrocytic and inhibitory activity and change the brain's topological configuration in line with the hierarchical organization of the cerebral cortex. Together, these findings reveal how the LC-NA system achieves a nuanced regulation of global circuit operations., (© 2024. The Author(s).)
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- 2024
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24. Cortical acetylcholine dynamics are predicted by cholinergic axon activity and behavior state.
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Neyhart E, Zhou N, Munn BR, Law RG, Smith C, Mridha ZH, Blanco FA, Li G, Li Y, Hu M, McGinley MJ, Shine JM, and Reimer J
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- Animals, Mice, Cerebral Cortex metabolism, Cerebral Cortex physiology, Male, Behavior, Animal, Acetylcholine metabolism, Axons metabolism, Cholinergic Neurons metabolism, Cholinergic Neurons physiology
- Abstract
Acetylcholine (ACh) is thought to play a role in driving the rapid, spontaneous brain-state transitions that occur during wakefulness; however, the spatiotemporal properties of cortical ACh activity during these state changes are still unclear. We perform simultaneous imaging of GRAB-ACh sensors, GCaMP-expressing basal forebrain axons, and behavior to address this question. We observed a high correlation between axon and GRAB-ACh activity around periods of locomotion and pupil dilation. GRAB-ACh fluorescence could be accurately predicted from axonal activity alone, and local ACh activity decreased at farther distances from an axon. Deconvolution of GRAB-ACh traces allowed us to account for sensor kinetics and emphasized rapid clearance of small ACh transients. We trained a model to predict ACh from pupil size and running speed, which generalized well to unseen data. These results contribute to a growing understanding of the precise timing and spatial characteristics of cortical ACh during fast brain-state transitions., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
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- 2024
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25. Causal evidence for cholinergic stabilization of attractor landscape dynamics.
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Taylor NL, Whyte CJ, Munn BR, Chang C, Lizier JT, Leopold DA, Turchi JN, Zaborszky L, Műller EJ, and Shine JM
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- Animals, Basal Nucleus of Meynert physiology, Basal Nucleus of Meynert metabolism, Acetylcholine metabolism, Macaca mulatta, Male, Cholinergic Neurons physiology, Cholinergic Neurons metabolism, Cerebral Cortex physiology, Cerebral Cortex metabolism, Neurons metabolism, Neurons physiology, Models, Neurological, Magnetic Resonance Imaging
- Abstract
There is substantial evidence that neuromodulatory systems critically influence brain state dynamics; however, most work has been purely descriptive. Here, we quantify, using data combining local inactivation of the basal forebrain with simultaneous measurement of resting-state fMRI activity in the macaque, the causal role of long-range cholinergic input to the stabilization of brain states in the cerebral cortex. Local inactivation of the nucleus basalis of Meynert (nbM) leads to a decrease in the energy barriers required for an fMRI state transition in cortical ongoing activity. Moreover, the inactivation of particular nbM sub-regions predominantly affects information transfer in cortical regions known to receive direct anatomical projections. We demonstrate these results in a simple neurodynamical model of cholinergic impact on neuronal firing rates and slow hyperpolarizing adaptation currents. We conclude that the cholinergic system plays a critical role in stabilizing macroscale brain state dynamics., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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26. A sensorimotor-association axis of thalamocortical connection development.
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Sydnor VJ, Bagautdinova J, Larsen B, Arcaro MJ, Barch DM, Bassett DS, Alexander-Bloch AF, Cook PA, Covitz S, Franco AR, Gur RE, Gur RC, Mackey AP, Mehta K, Meisler SL, Milham MP, Moore TM, Müller EJ, Roalf DR, Salo T, Schubiner G, Seidlitz J, Shinohara RT, Shine JM, Yeh FC, Cieslak M, and Satterthwaite TD
- Abstract
Human cortical development follows a sensorimotor-to-association sequence during childhood and adolescence
1-6 . The brain's capacity to enact this sequence over decades indicates that it relies on intrinsic mechanisms to regulate inter-regional differences in the timing of cortical maturation, yet regulators of human developmental chronology are not well understood. Given evidence from animal models that thalamic axons modulate windows of cortical plasticity7-12 , here we evaluate the overarching hypothesis that structural connections between the thalamus and cortex help to coordinate cortical maturational heterochronicity during youth. We first introduce, cortically annotate, and anatomically validate a new atlas of human thalamocortical connections using diffusion tractography. By applying this atlas to three independent youth datasets (ages 8-23 years; total N = 2,676), we reproducibly demonstrate that thalamocortical connections develop along a maturational gradient that aligns with the cortex's sensorimotor-association axis. Associative cortical regions with thalamic connections that take longest to mature exhibit protracted expression of neurochemical, structural, and functional markers indicative of higher circuit plasticity as well as heightened environmental sensitivity. This work highlights a central role for the thalamus in the orchestration of hierarchically organized and environmentally sensitive windows of cortical developmental malleability., Competing Interests: Competing Interests The authors declare no competing interests.- Published
- 2024
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27. Thalamic contributions to the state and contents of consciousness.
- Author
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Whyte CJ, Redinbaugh MJ, Shine JM, and Saalmann YB
- Subjects
- Humans, Animals, Neural Pathways physiology, Neurons physiology, Cerebral Cortex physiology, Wakefulness physiology, Thalamus physiology, Consciousness physiology
- Abstract
Consciousness can be conceptualized as varying along at least two dimensions: the global state of consciousness and the content of conscious experience. Here, we highlight the cellular and systems-level contributions of the thalamus to conscious state and then argue for thalamic contributions to conscious content, including the integrated, segregated, and continuous nature of our experience. We underscore vital, yet distinct roles for core- and matrix-type thalamic neurons. Through reciprocal interactions with deep-layer cortical neurons, matrix neurons support wakefulness and determine perceptual thresholds, whereas the cortical interactions of core neurons maintain content and enable perceptual constancy. We further propose that conscious integration, segregation, and continuity depend on the convergent nature of corticothalamic projections enabling dimensionality reduction, a thalamic reticular nucleus-mediated divisive normalization-like process, and sustained coherent activity in thalamocortical loops, respectively. Overall, we conclude that the thalamus plays a central topological role in brain structures controlling conscious experience., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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28. Abnormal higher-order network interactions in Parkinson's disease visual hallucinations.
- Author
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Tan JB, Müller EJ, Orlando IF, Taylor NL, Margulies DS, Szeto J, Lewis SJG, Shine JM, and O'Callaghan C
- Subjects
- Humans, Magnetic Resonance Imaging methods, Hallucinations etiology, Brain diagnostic imaging, Brain Mapping, Parkinson Disease complications
- Abstract
Visual hallucinations in Parkinson's disease can be viewed from a systems-level perspective, whereby dysfunctional communication between brain networks responsible for perception predisposes a person to hallucinate. To this end, abnormal functional interactions between higher-order and primary sensory networks have been implicated in the pathophysiology of visual hallucinations in Parkinson's disease, however the precise signatures remain to be determined. Dimensionality reduction techniques offer a novel means for simplifying the interpretation of multidimensional brain imaging data, identifying hierarchical patterns in the data that are driven by both within- and between-functional network changes. Here, we applied two complementary non-linear dimensionality reduction techniques-diffusion-map embedding and t-distributed stochastic neighbour embedding (t-SNE)-to resting state functional MRI data, in order to characterize the altered functional hierarchy associated with susceptibility to visual hallucinations. Our study involved 77 people with Parkinson's disease (31 with hallucinations; 46 without hallucinations) and 19 age-matched healthy control subjects. In patients with visual hallucinations, we found compression of the unimodal-heteromodal gradient consistent with increased functional integration between sensory and higher order networks. This was mirrored in a traditional functional connectivity analysis, which showed increased connectivity between the visual and default mode networks in the hallucinating group. Together, these results suggest a route by which higher-order regions may have excessive influence over earlier sensory processes, as proposed by theoretical models of hallucinations across disorders. By contrast, the t-SNE analysis identified distinct alterations in prefrontal regions, suggesting an additional layer of complexity in the functional brain network abnormalities implicated in hallucinations, which was not apparent in traditional functional connectivity analyses. Together, the results confirm abnormal brain organization associated with the hallucinating phenotype in Parkinson's disease and highlight the utility of applying convergent dimensionality reduction techniques to investigate complex clinical symptoms. In addition, the patterns we describe in Parkinson's disease converge with those seen in other conditions, suggesting that reduced hierarchical differentiation across sensory-perceptual systems may be a common transdiagnostic vulnerability in neuropsychiatric disorders with perceptual disturbances., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2024
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29. Brain-wide impacts of sedation on spontaneous activity and auditory processing in larval zebrafish.
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Favre-Bulle IA, Muller E, Lee C, Scholz LA, Arnold J, Munn B, Wainstein G, Shine JM, and Scott EK
- Abstract
Despite their widespread use, we have limited knowledge of the mechanisms by which sedatives mediate their effects on brain-wide networks. This is, in part, due to the technical challenge of observing activity across large populations of neurons in normal and sedated brains. In this study, we examined the effects of the sedative dexmedetomidine, and its antagonist atipamezole, on spontaneous brain dynamics and auditory processing in zebrafish larvae. Our brain-wide, cellular-resolution calcium imaging reveals, for the first time, the brain regions involved in these network-scale dynamics and the individual neurons that are affected within those regions. Further analysis reveals a variety of dynamic changes in the brain at baseline, including marked reductions in spontaneous activity, correlation, and variance. The reductions in activity and variance represent a "quieter" brain state during sedation, an effect that causes highly correlated evoked activity in the auditory system to stand out more than it does in un-sedated brains. We also observe a reduction in auditory response latencies across the brain during sedation, suggesting that the removal of spontaneous activity leaves the core auditory pathway free of impingement from other non-auditory information. Finally, we describe a less dynamic brain-wide network during sedation, with a higher energy barrier and a lower probability of brain state transitions during sedation. In total, our brain-wide, cellular-resolution analysis shows that sedation leads to quieter, more stable, and less dynamic brain, and that against this background, responses across the auditory processing pathway become sharper and more prominent., Significance Statement: Animals' brain states constantly fluctuate in response to their environment and context, leading to changes in perception and behavioral choices. Alterations in perception, sensorimotor gating, and behavioral selection are hallmarks of numerous neuropsychiatric disorders, but the circuit- and network-level underpinnings of these alterations are poorly understood.Pharmacological sedation alters perception and responsiveness and provides a controlled and repeatable manipulation for studying brain states and their underlying circuitry. Here, we show that sedation of larval zebrafish with dexmedetomidine reduces brain-wide spontaneous activity and locomotion but leaves portions of brain-wide auditory processing and behavior intact. We describe and computationally model changes at the levels of individual neurons, local circuits, and brain-wide networks that lead to altered brain states and sensory processing during sedation.
- Published
- 2024
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30. Criticality supports cross-frequency cortical-thalamic information transfer during conscious states.
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Toker D, Müller E, Miyamoto H, Riga MS, Lladó-Pelfort L, Yamakawa K, Artigas F, Shine JM, Hudson AE, Pouratian N, and Monti MM
- Subjects
- Humans, Rats, Mice, Animals, Cerebral Cortex physiology, Unconsciousness chemically induced, Thalamus physiology, Electroencephalography, Consciousness, Hallucinogens
- Abstract
Consciousness is thought to be regulated by bidirectional information transfer between the cortex and thalamus, but the nature of this bidirectional communication - and its possible disruption in unconsciousness - remains poorly understood. Here, we present two main findings elucidating mechanisms of corticothalamic information transfer during conscious states. First, we identify a highly preserved spectral channel of cortical-thalamic communication that is present during conscious states, but which is diminished during the loss of consciousness and enhanced during psychedelic states. Specifically, we show that in humans, mice, and rats, information sent from either the cortex or thalamus via δ/θ/α waves (∼1-13 Hz) is consistently encoded by the other brain region by high γ waves (52-104 Hz); moreover, unconsciousness induced by propofol anesthesia or generalized spike-and-wave seizures diminishes this cross-frequency communication, whereas the psychedelic 5-methoxy- N , N -dimethyltryptamine (5-MeO-DMT) enhances this low-to-high frequency interregional communication. Second, we leverage numerical simulations and neural electrophysiology recordings from the thalamus and cortex of human patients, rats, and mice to show that these changes in cross-frequency cortical-thalamic information transfer may be mediated by excursions of low-frequency thalamocortical electrodynamics toward/away from edge-of-chaos criticality, or the phase transition from stability to chaos. Overall, our findings link thalamic-cortical communication to consciousness, and further offer a novel, mathematically well-defined framework to explain the disruption to thalamic-cortical information transfer during unconscious states., Competing Interests: DT, EM, HM, MR, LL, KY, FA, JS, AH, NP, MM No competing interests declared
- Published
- 2024
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31. The feasibility of artificial consciousness through the lens of neuroscience.
- Author
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Aru J, Larkum ME, and Shine JM
- Subjects
- Animals, Humans, Artificial Intelligence, Feasibility Studies, Biological Evolution, Mammals, Consciousness, Neurosciences
- Abstract
Interactions with large language models (LLMs) have led to the suggestion that these models may soon be conscious. From the perspective of neuroscience, this position is difficult to defend. For one, the inputs to LLMs lack the embodied, embedded information content characteristic of our sensory contact with the world around us. Secondly, the architectures of present-day artificial intelligence algorithms are missing key features of the thalamocortical system that have been linked to conscious awareness in mammals. Finally, the evolutionary and developmental trajectories that led to the emergence of living conscious organisms arguably have no parallels in artificial systems as envisioned today. The existence of living organisms depends on their actions and their survival is intricately linked to multi-level cellular, inter-cellular, and organismal processes culminating in agency and consciousness., Competing Interests: Declaration of interests The authors declare no competing interests in relation to this work., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
- Published
- 2023
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32. Integrating brainstem and cortical functional architectures.
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Hansen JY, Cauzzo S, Singh K, García-Gomar MG, Shine JM, Bianciardi M, and Misic B
- Abstract
The brainstem is a fundamental component of the central nervous system yet it is typically excluded from in vivo human brain mapping efforts, precluding a complete understanding of how the brainstem influences cortical function. Here we use high-resolution 7 Tesla fMRI to derive a functional connectome encompassing cortex as well as 58 brainstem nuclei spanning the midbrain, pons and medulla. We identify a compact set of integrative hubs in the brainstem with widespread connectivity with cerebral cortex. Patterns of connectivity between brainstem and cerebral cortex manifest as multiple emergent phenomena including neurophysiological oscillatory rhythms, patterns of cognitive functional specialization, and the unimodal-transmodal functional hierarchy. This persistent alignment between cortical functional topographies and brainstem nuclei is shaped by the spatial arrangement of multiple neurotransmitter receptors and transporters. We replicate all findings using 3 Tesla data from the same participants. Collectively, we find that multiple organizational features of cortical activity can be traced back to the brainstem., Competing Interests: Additional Declarations: There is NO Competing Interest.
- Published
- 2023
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33. A thalamocortical substrate for integrated information via critical synchronous bursting.
- Author
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Munn BR, Müller EJ, Aru J, Whyte CJ, Gidon A, Larkum ME, and Shine JM
- Subjects
- Animals, Dendrites physiology, Thalamus physiology, Mammals, Neurons physiology, Pyramidal Cells physiology
- Abstract
Understanding the neurobiological mechanisms underlying consciousness remains a significant challenge. Recent evidence suggests that the coupling between distal-apical and basal-somatic dendrites in thick-tufted layer 5 pyramidal neurons (L5
PN ), regulated by the nonspecific-projecting thalamus, is crucial for consciousness. Yet, it is uncertain whether this thalamocortical mechanism can support emergent signatures of consciousness, such as integrated information. To address this question, we constructed a biophysical network of dual-compartment thick-tufted L5PN , with dendrosomatic coupling controlled by thalamic inputs. Our findings demonstrate that integrated information is maximized when nonspecific thalamic inputs drive the system into a regime of time-varying synchronous bursting. Here, the system exhibits variable spiking dynamics with broad pairwise correlations, supporting the enhanced integrated information. Further, the observed peak in integrated information aligns with criticality signatures and empirically observed layer 5 pyramidal bursting rates. These results suggest that the thalamocortical core of the mammalian brain may be evolutionarily configured to optimize effective information processing, providing a potential neuronal mechanism that integrates microscale theories with macroscale signatures of consciousness.- Published
- 2023
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34. Functional neuroimaging as a catalyst for integrated neuroscience.
- Author
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Finn ES, Poldrack RA, and Shine JM
- Subjects
- Humans, Functional Neuroimaging, Brain diagnostic imaging, Phenotype, Neurosciences, Cognitive Neuroscience
- Abstract
Functional magnetic resonance imaging (fMRI) enables non-invasive access to the awake, behaving human brain. By tracking whole-brain signals across a diverse range of cognitive and behavioural states or mapping differences associated with specific traits or clinical conditions, fMRI has advanced our understanding of brain function and its links to both normal and atypical behaviour. Despite this headway, progress in human cognitive neuroscience that uses fMRI has been relatively isolated from rapid advances in other subdomains of neuroscience, which themselves are also somewhat siloed from one another. In this Perspective, we argue that fMRI is well-placed to integrate the diverse subfields of systems, cognitive, computational and clinical neuroscience. We first summarize the strengths and weaknesses of fMRI as an imaging tool, then highlight examples of studies that have successfully used fMRI in each subdomain of neuroscience. We then provide a roadmap for the future advances that will be needed to realize this integrative vision. In this way, we hope to demonstrate how fMRI can help usher in a new era of interdisciplinary coherence in neuroscience., (© 2023. Crown.)
- Published
- 2023
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35. Neuronal connected burst cascades bridge macroscale adaptive signatures across arousal states.
- Author
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Munn BR, Müller EJ, Medel V, Naismith SL, Lizier JT, Sanders RD, and Shine JM
- Subjects
- Animals, Humans, Consciousness physiology, Pyramidal Cells, Arousal, Macaca, Brain physiology, Neurons physiology
- Abstract
The human brain displays a rich repertoire of states that emerge from the microscopic interactions of cortical and subcortical neurons. Difficulties inherent within large-scale simultaneous neuronal recording limit our ability to link biophysical processes at the microscale to emergent macroscopic brain states. Here we introduce a microscale biophysical network model of layer-5 pyramidal neurons that display graded coarse-sampled dynamics matching those observed in macroscale electrophysiological recordings from macaques and humans. We invert our model to identify the neuronal spike and burst dynamics that differentiate unconscious, dreaming, and awake arousal states and provide insights into their functional signatures. We further show that neuromodulatory arousal can mediate different modes of neuronal dynamics around a low-dimensional energy landscape, which in turn changes the response of the model to external stimuli. Our results highlight the promise of multiscale modelling to bridge theories of consciousness across spatiotemporal scales., (© 2023. Crown.)
- Published
- 2023
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36. Controversies and progress on standardization of large-scale brain network nomenclature.
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Uddin LQ, Betzel RF, Cohen JR, Damoiseaux JS, De Brigard F, Eickhoff SB, Fornito A, Gratton C, Gordon EM, Laird AR, Larson-Prior L, McIntosh AR, Nickerson LD, Pessoa L, Pinho AL, Poldrack RA, Razi A, Sadaghiani S, Shine JM, Yendiki A, Yeo BTT, and Spreng RN
- Abstract
Progress in scientific disciplines is accompanied by standardization of terminology. Network neuroscience, at the level of macroscale organization of the brain, is beginning to confront the challenges associated with developing a taxonomy of its fundamental explanatory constructs. The Workgroup for HArmonized Taxonomy of NETworks (WHATNET) was formed in 2020 as an Organization for Human Brain Mapping (OHBM)-endorsed best practices committee to provide recommendations on points of consensus, identify open questions, and highlight areas of ongoing debate in the service of moving the field toward standardized reporting of network neuroscience results. The committee conducted a survey to catalog current practices in large-scale brain network nomenclature. A few well-known network names (e.g., default mode network) dominated responses to the survey, and a number of illuminating points of disagreement emerged. We summarize survey results and provide initial considerations and recommendations from the workgroup. This perspective piece includes a selective review of challenges to this enterprise, including (1) network scale, resolution, and hierarchies; (2) interindividual variability of networks; (3) dynamics and nonstationarity of networks; (4) consideration of network affiliations of subcortical structures; and (5) consideration of multimodal information. We close with minimal reporting guidelines for the cognitive and network neuroscience communities to adopt., (© 2023 Massachusetts Institute of Technology.)
- Published
- 2023
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37. Macroscale Thalamic Functional Organization Disturbances and Underlying Core Cytoarchitecture in Early-Onset Schizophrenia.
- Author
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Fan YS, Xu Y, Bayrak Ş, Shine JM, Wan B, Li H, Li L, Yang S, Meng Y, Valk SL, and Chen H
- Subjects
- Humans, Cerebral Cortex diagnostic imaging, Magnetic Resonance Imaging, Thalamus diagnostic imaging, Neural Pathways, Schizophrenia diagnostic imaging, Psychotic Disorders
- Abstract
Background and Hypothesis: Schizophrenia is a polygenetic mental disorder with heterogeneous positive and negative symptom constellations, and is associated with abnormal cortical connectivity. The thalamus has a coordinative role in cortical function and is key to the development of the cerebral cortex. Conversely, altered functional organization of the thalamus might relate to overarching cortical disruptions in schizophrenia, anchored in development., Study Design: Here, we contrasted resting-state fMRI in 86 antipsychotic-naive first-episode early-onset schizophrenia (EOS) patients and 91 typically developing controls to study whether macroscale thalamic organization is altered in EOS. Employing dimensional reduction techniques on thalamocortical functional connectome (FC), we derived lateral-medial and anterior-posterior thalamic functional axes., Study Results: We observed increased segregation of macroscale thalamic functional organization in EOS patients, which was related to altered thalamocortical interactions both in unimodal and transmodal networks. Using an ex vivo approximation of core-matrix cell distribution, we found that core cells particularly underlie the macroscale abnormalities in EOS patients. Moreover, the disruptions were associated with schizophrenia-related gene expression maps. Behavioral and disorder decoding analyses indicated that the macroscale hierarchy disturbances might perturb both perceptual and abstract cognitive functions and contribute to negative syndromes in patients., Conclusions: These findings provide mechanistic evidence for disrupted thalamocortical system in schizophrenia, suggesting a unitary pathophysiological framework., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Maryland Psychiatric Research Center. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2023
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38. Integrative Brain States Facilitate the Expression of Parkinson's Tremor.
- Author
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Dirkx MF, Shine JM, and Helmich RC
- Subjects
- Humans, Brain pathology, Basal Ganglia pathology, Cerebellum, Magnetic Resonance Imaging methods, Tremor, Parkinson Disease complications
- Abstract
Background: Parkinson's disease (PD) rest tremor emerges from pathological activity in the basal ganglia and cerebello-thalamo-cortical circuits. A well-known clinical feature is the waxing and waning of PD tremor amplitude, but the mechanisms that drive this variability are unclear. Previous work has shown that arousal amplifies PD tremor by increasing between-network connectivity. Furthermore, brain states in PD are biased toward integration rather than segregation, a pattern that is also associated with increased arousal., Objective: The aim was to test the hypothesis that fluctuations in integrative brain states and/or arousal drive spontaneous fluctuations in PD rest tremor., Methods: We compared the temporal relationship between cerebral integration, the ascending arousal system, and tremor, both during cognitive load and in the resting state. In 40 tremor-dominant PD patients, we performed functional magnetic resonance imaging using concurrent tremor recordings and proxy measures of the ascending arousal system (pupil diameter, heart rate). We calculated whole-brain dynamic functional connectivity and used graph theory to determine a scan-by-scan measure of cerebral integration, which we related to the onset of tremor episodes., Results: Fluctuations in cerebral integration were time locked to spontaneous changes in tremor amplitude: cerebral integration increased 13 seconds before tremor onset and predicted the amplitude of subsequent increases in tremor amplitude. During but not before tremor episodes, pupil diameter and heart rate increased and correlated with tremor amplitude., Conclusions: Integrative brain states are an important cerebral environment in which tremor-related activity emerges, which is then amplified by the ascending arousal system. New treatments focused on attenuating enhanced cerebral integration in PD may reduce tremor. © 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society., (© 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.)
- Published
- 2023
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39. The non-specific matrix thalamus facilitates the cortical information processing modes relevant for conscious awareness.
- Author
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Müller EJ, Munn BR, Redinbaugh MJ, Lizier J, Breakspear M, Saalmann YB, and Shine JM
- Subjects
- Thalamus, Consciousness, Thalamic Nuclei, Neural Pathways, Cerebral Cortex, Propofol pharmacology
- Abstract
The neurobiological mechanisms of arousal and anesthesia remain poorly understood. Recent evidence highlights the key role of interactions between the cerebral cortex and the diffusely projecting matrix thalamic nuclei. Here, we interrogate these processes in a whole-brain corticothalamic neural mass model endowed with targeted and diffusely projecting thalamocortical nuclei inferred from empirical data. This model captures key features seen in propofol anesthesia, including diminished network integration, lowered state diversity, impaired susceptibility to perturbation, and decreased corticocortical coherence. Collectively, these signatures reflect a suppression of information transfer across the cerebral cortex. We recover these signatures of conscious arousal by selectively stimulating the matrix thalamus, recapitulating empirical results in macaque, as well as wake-like information processing states that reflect the thalamic modulation of large-scale cortical attractor dynamics. Our results highlight the role of matrix thalamocortical projections in shaping many features of complex cortical dynamics to facilitate the unique communication states supporting conscious awareness., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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40. Subthalamic Nucleus Activity during Cognitive Load and Gait Dysfunction in Parkinson's Disease.
- Author
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Georgiades MJ, Shine JM, Gilat M, McMaster J, Owler B, Mahant N, and Lewis SJG
- Subjects
- Humans, Gait physiology, Cognition, Subthalamic Nucleus physiology, Parkinson Disease complications, Parkinson Disease therapy, Gait Disorders, Neurologic etiology, Gait Disorders, Neurologic therapy, Deep Brain Stimulation methods
- Abstract
Background: Gait freezing is a common, disabling symptom of Parkinson's disease characterized by sudden motor arrest during walking. Adaptive deep brain stimulation devices that detect freezing and deliver real-time, symptom-specific stimulation are a potential treatment strategy. Real-time alterations in subthalamic nucleus firing patterns have been demonstrated with lower limb freezing, however, whether similar abnormal signatures occur with freezing provoked by cognitive load, is unknown., Methods: We obtained subthalamic nucleus microelectrode recordings from eight Parkinson's disease patients performing a validated virtual reality gait task, requiring responses to on-screen cognitive cues while maintaining motor output., Results: Signal analysis during 15 trials containing freezing or significant motor output slowing precipitated by dual-tasking demonstrated reduced θ frequency (3-8 Hz) firing compared to 18 unaffected trials., Conclusions: These preliminary results reveal a potential neurobiological basis for the interplay between cognitive factors and gait disturbances including freezing in Parkinson's disease, informing development of adaptive deep brain stimulation protocols. © 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society., (© 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.)
- Published
- 2023
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41. Computational modelling in disorders of consciousness: Closing the gap towards personalised models for restoring consciousness.
- Author
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Luppi AI, Cabral J, Cofre R, Mediano PAM, Rosas FE, Qureshi AY, Kuceyeski A, Tagliazucchi E, Raimondo F, Deco G, Shine JM, Kringelbach ML, Orio P, Ching S, Sanz Perl Y, Diringer MN, Stevens RD, and Sitt JD
- Subjects
- Humans, Consciousness Disorders diagnostic imaging, Neuroimaging, Computer Simulation, Consciousness physiology, Brain Injuries complications
- Abstract
Disorders of consciousness are complex conditions characterised by persistent loss of responsiveness due to brain injury. They present diagnostic challenges and limited options for treatment, and highlight the urgent need for a more thorough understanding of how human consciousness arises from coordinated neural activity. The increasing availability of multimodal neuroimaging data has given rise to a wide range of clinically- and scientifically-motivated modelling efforts, seeking to improve data-driven stratification of patients, to identify causal mechanisms for patient pathophysiology and loss of consciousness more broadly, and to develop simulations as a means of testing in silico potential treatment avenues to restore consciousness. As a dedicated Working Group of clinicians and neuroscientists of the international Curing Coma Campaign, here we provide our framework and vision to understand the diverse statistical and generative computational modelling approaches that are being employed in this fast-growing field. We identify the gaps that exist between the current state-of-the-art in statistical and biophysical computational modelling in human neuroscience, and the aspirational goal of a mature field of modelling disorders of consciousness; which might drive improved treatments and outcomes in the clinic. Finally, we make several recommendations for how the field as a whole can work together to address these challenges., Competing Interests: Declaration of Competing Interest The authors have no conflicts of interest to declare., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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42. The impact of the human thalamus on brain-wide information processing.
- Author
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Shine JM, Lewis LD, Garrett DD, and Hwang K
- Subjects
- Humans, Cognition, Thalamus physiology, Neuroimaging, Neural Pathways physiology, Magnetic Resonance Imaging methods, Brain physiology
- Abstract
The thalamus is a small, bilateral structure in the diencephalon that integrates signals from many areas of the CNS. This critical anatomical position allows the thalamus to influence whole-brain activity and adaptive behaviour. However, traditional research paradigms have struggled to attribute specific functions to the thalamus, and it has remained understudied in the human neuroimaging literature. Recent advances in analytical techniques and increased accessibility to large, high-quality data sets have brought forth a series of studies and findings that (re-)establish the thalamus as a core region of interest in human cognitive neuroscience, a field that otherwise remains cortico-centric. In this Perspective, we argue that using whole-brain neuroimaging approaches to investigate the thalamus and its interaction with the rest of the brain is key for understanding systems-level control of information processing. To this end, we highlight the role of the thalamus in shaping a range of functional signatures, including evoked activity, interregional connectivity, network topology and neuronal variability, both at rest and during the performance of cognitive tasks., (© 2023. Springer Nature Limited.)
- Published
- 2023
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43. Understanding visual hallucinations: A new synthesis.
- Author
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Collerton D, Barnes J, Diederich NJ, Dudley R, Ffytche D, Friston K, Goetz CG, Goldman JG, Jardri R, Kulisevsky J, Lewis SJG, Nara S, O'Callaghan C, Onofrj M, Pagonabarraga J, Parr T, Shine JM, Stebbins G, Taylor JP, Tsuda I, and Weil RS
- Subjects
- Humans, Brain, Hallucinations psychology, Attention Deficit Disorder with Hyperactivity
- Abstract
Despite decades of research, we do not definitively know how people sometimes see things that are not there. Eight models of complex visual hallucinations have been published since 2000, including Deafferentation, Reality Monitoring, Perception and Attention Deficit, Activation, Input, and Modulation, Hodological, Attentional Networks, Active Inference, and Thalamocortical Dysrhythmia Default Mode Network Decoupling. Each was derived from different understandings of brain organisation. To reduce this variability, representatives from each research group agreed an integrated Visual Hallucination Framework that is consistent with current theories of veridical and hallucinatory vision. The Framework delineates cognitive systems relevant to hallucinations. It allows a systematic, consistent, investigation of relationships between the phenomenology of visual hallucinations and changes in underpinning cognitive structures. The episodic nature of hallucinations highlights separate factors associated with the onset, persistence, and end of specific hallucinations suggesting a complex relationship between state and trait markers of hallucination risk. In addition to a harmonised interpretation of existing evidence, the Framework highlights new avenues of research, and potentially, new approaches to treating distressing hallucinations., Competing Interests: Conflicts of interest The following authors report no competing interests: James Barnes, Robert Dudley, Nico Diederich, Dominic ffytche, Karl Friston, Simon Lewis, Shigetoshi Nara, Claire O’Callaghan, Javier Pagonabarraga, James M Shine, Ichiro Tsuda. Daniel Collerton has received royalty payments from Wiley publishers. Christopher C Goetz has received faculty stipends from the International Parkinson and Movement Disorder Society, Guest professorship honoraria provided by University of Chicago and Illinois State Neurological Society, and a stipend as Volume Editor from Elsevier Publishers. He has also received royalty payments from Elsevier Publishers and Wolters Kluwer Publishers. Jennifer G Goldman has received grant/research support from Acadia Pharmaceuticals and honoraria from Medscape. Renaud Jardri has been invited to scientific meetings and expert boards by Lundbeck, Janssen and Otsuka. Jaime Kulisevsky has received fees for presentations or advisory boards from: Teva, UCB, Roche, Abbvie, Zambon, Bial, Sanofii and Neuroderm. Marco Onofrj has served on the scientific advisory boards of GlaxoSmithKline, Novartis, Lundbeck, Eisai, Valeant, Medtronic, and Newron; has received speaker honoraria from Zambon, the World Parkinson Congress, the Movement Disorder Society, and the Atypical Dementias congress; publishing royalties from Springer; was an invited guest and lecturer for the Mental Disorders in Parkinson Disease Congress; serves on the editorial board of Medicine (Baltimore) and Frontiers in Neuroscience; has been employed as a speaker for Boehringer Ingelheim, GlaxoSmithKline, UCB, and Zambon; and has received research support from the Italian Ministry of Health and the Italian Ministry of Education. Glenn Stebbins received compensation for consulting and advisory board membership from Acadia Pharmaceuticals, Adamas Pharmaceuticals, Biogen, Ceregene, CHDI Management, Neurocrine Biosciences, Pfizer, Tools-4-Patients, Ultragenyx and the Sunshine Care Foundation. John-Paul Taylor has received speaker fees from GE Healthcare. He has consulted for Kirin Kyowa and Sosei-Heptares. Rimona S Weil has received speaking honoraria from GE Healthcare and writing honoraria from Britannia., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2023
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44. Parallel processing relies on a distributed, low-dimensional cortico-cerebellar architecture.
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Müller EJ, Palesi F, Hou KY, Tan J, Close T, Gandini Wheeler-Kingschott CAM, D'Angelo E, Calamante F, and Shine JM
- Abstract
A characteristic feature of human cognition is our ability to 'multi-task'-performing two or more tasks in parallel-particularly when one task is well learned. How the brain supports this capacity remains poorly understood. Most past studies have focussed on identifying the areas of the brain-typically the dorsolateral prefrontal cortex-that are required to navigate information-processing bottlenecks. In contrast, we take a systems neuroscience approach to test the hypothesis that the capacity to conduct effective parallel processing relies on a distributed architecture that interconnects the cerebral cortex with the cerebellum. The latter structure contains over half of the neurons in the adult human brain and is well suited to support the fast, effective, dynamic sequences required to perform tasks relatively automatically. By delegating stereotyped within-task computations to the cerebellum, the cerebral cortex can be freed up to focus on the more challenging aspects of performing the tasks in parallel. To test this hypothesis, we analysed task-based fMRI data from 50 participants who performed a task in which they either balanced an avatar on a screen (balance), performed serial-7 subtractions (calculation) or performed both in parallel (dual task). Using a set of approaches that include dimensionality reduction, structure-function coupling, and time-varying functional connectivity, we provide robust evidence in support of our hypothesis. We conclude that distributed interactions between the cerebral cortex and cerebellum are crucially involved in parallel processing in the human brain., (© 2023 Massachusetts Institute of Technology.)
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- 2023
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45. Noradrenergic and cholinergic systems take centre stage in neuropsychiatric diseases of ageing.
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Orlando IF, Shine JM, Robbins TW, Rowe JB, and O'Callaghan C
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- Humans, Brain, Aging, Cholinergic Agents, Parkinson Disease psychology, Lewy Body Disease
- Abstract
Noradrenergic and cholinergic systems are among the most vulnerable brain systems in neuropsychiatric diseases of ageing, including Alzheimer's disease, Parkinson's disease, Lewy body dementia, and progressive supranuclear palsy. As these systems fail, they contribute directly to many of the characteristic cognitive and psychiatric symptoms. However, their contribution to symptoms is not sufficiently understood, and pharmacological interventions targeting noradrenergic and cholinergic systems have met with mixed success. Part of the challenge is the complex neurobiology of these systems, operating across multiple timescales, and with non-linear changes across the adult lifespan and disease course. We address these challenges in a detailed review of the noradrenergic and cholinergic systems, outlining their roles in cognition and behaviour, and how they influence neuropsychiatric symptoms in disease. By bridging across levels of analysis, we highlight opportunities for improving drug therapies and for pursuing personalised medicine strategies., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2023
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46. Heart rate variability during slow wave sleep is linked to functional connectivity in the central autonomic network.
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Kong SDX, Gordon CJ, Hoyos CM, Wassing R, D'Rozario A, Mowszowski L, Ireland C, Palmer JR, Grunstein RR, Shine JM, McKinnon AC, and Naismith SL
- Abstract
Reduced heart rate variability can be an early sign of autonomic dysfunction in neurodegenerative diseases and may be related to brain dysfunction in the central autonomic network. As yet, such autonomic dysfunction has not been examined during sleep-which is an ideal physiological state to study brain-heart interaction as both the central and peripheral nervous systems behave differently compared to during wakefulness. Therefore, the primary aim of the current study was to examine whether heart rate variability during nocturnal sleep, specifically slow wave (deep) sleep, is associated with central autonomic network functional connectivity in older adults 'at-risk' of dementia. Older adults ( n = 78; age range = 50-88 years; 64% female) attending a memory clinic for cognitive concerns underwent resting-state functional magnetic resonance imaging and an overnight polysomnography. From these, central autonomic network functional connectivity strength and heart rate variability data during sleep were derived, respectively. High-frequency heart rate variability was extracted to index parasympathetic activity during distinct periods of sleep, including slow wave sleep as well as secondary outcomes of non-rapid eye movement sleep, wake after sleep onset, and rapid eye movement sleep. General linear models were used to examine associations between central autonomic network functional connectivity and high-frequency heart rate variability. Analyses revealed that increased high-frequency heart rate variability during slow wave sleep was associated with stronger functional connectivity ( F = 3.98, P = 0.022) in two core brain regions within the central autonomic network, the right anterior insular and posterior midcingulate cortex, as well as stronger functional connectivity ( F = 6.21, P = 0.005) between broader central autonomic network brain regions-the right amygdala with three sub-nuclei of the thalamus. There were no significant associations between high-frequency heart rate variability and central autonomic network connectivity during wake after sleep onset or rapid eye movement sleep. These findings show that in older adults 'at-risk' of dementia, parasympathetic regulation during slow wave sleep is uniquely linked to differential functional connectivity within both core and broader central autonomic network brain regions. It is possible that dysfunctional brain-heart interactions manifest primarily during this specific period of sleep known for its role in memory and metabolic clearance. Further studies elucidating the pathophysiology and directionality of this relationship should be conducted to determine if heart rate variability drives neurodegeneration, or if brain degeneration within the central autonomic network promotes aberrant heart rate variability., Competing Interests: The authors report no competing interests., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Guarantors of Brain.)
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- 2023
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47. Priorities for research on neuromodulatory subcortical systems in Alzheimer's disease: Position paper from the NSS PIA of ISTAART.
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Ehrenberg AJ, Kelberman MA, Liu KY, Dahl MJ, Weinshenker D, Falgàs N, Dutt S, Mather M, Ludwig M, Betts MJ, Winer JR, Teipel S, Weigand AJ, Eschenko O, Hämmerer D, Leiman M, Counts SE, Shine JM, Robertson IH, Levey AI, Lancini E, Son G, Schneider C, Egroo MV, Liguori C, Wang Q, Vazey EM, Rodriguez-Porcel F, Haag L, Bondi MW, Vanneste S, Freeze WM, Yi YJ, Maldinov M, Gatchel J, Satpati A, Babiloni C, Kremen WS, Howard R, Jacobs HIL, and Grinberg LT
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- Humans, Brain pathology, Biomarkers, Disease Progression, Alzheimer Disease pathology
- Abstract
The neuromodulatory subcortical system (NSS) nuclei are critical hubs for survival, hedonic tone, and homeostasis. Tau-associated NSS degeneration occurs early in Alzheimer's disease (AD) pathogenesis, long before the emergence of pathognomonic memory dysfunction and cortical lesions. Accumulating evidence supports the role of NSS dysfunction and degeneration in the behavioral and neuropsychiatric manifestations featured early in AD. Experimental studies even suggest that AD-associated NSS degeneration drives brain neuroinflammatory status and contributes to disease progression, including the exacerbation of cortical lesions. Given the important pathophysiologic and etiologic roles that involve the NSS in early AD stages, there is an urgent need to expand our understanding of the mechanisms underlying NSS vulnerability and more precisely detail the clinical progression of NSS changes in AD. Here, the NSS Professional Interest Area of the International Society to Advance Alzheimer's Research and Treatment highlights knowledge gaps about NSS within AD and provides recommendations for priorities specific to clinical research, biomarker development, modeling, and intervention. HIGHLIGHTS: Neuromodulatory nuclei degenerate in early Alzheimer's disease pathological stages. Alzheimer's pathophysiology is exacerbated by neuromodulatory nuclei degeneration. Neuromodulatory nuclei degeneration drives neuropsychiatric symptoms in dementia. Biomarkers of neuromodulatory integrity would be value-creating for dementia care. Neuromodulatory nuclei present strategic prospects for disease-modifying therapies., (© 2023 The Authors. Alzheimer's & Dementia published by Wiley Periodicals LLC on behalf of Alzheimer's Association.)
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- 2023
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48. Neuromorphic learning, working memory, and metaplasticity in nanowire networks.
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Loeffler A, Diaz-Alvarez A, Zhu R, Ganesh N, Shine JM, Nakayama T, and Kuncic Z
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- Humans, Neuronal Plasticity, Learning, Synapses, Memory, Short-Term, Nanowires
- Abstract
Nanowire networks (NWNs) mimic the brain's neurosynaptic connectivity and emergent dynamics. Consequently, NWNs may also emulate the synaptic processes that enable higher-order cognitive functions such as learning and memory. A quintessential cognitive task used to measure human working memory is the n -back task. In this study, task variations inspired by the n -back task are implemented in a NWN device, and external feedback is applied to emulate brain-like supervised and reinforcement learning. NWNs are found to retain information in working memory to at least n = 7 steps back, remarkably similar to the originally proposed "seven plus or minus two" rule for human subjects. Simulations elucidate how synapse-like NWN junction plasticity depends on previous synaptic modifications, analogous to "synaptic metaplasticity" in the brain, and how memory is consolidated via strengthening and pruning of synaptic conductance pathways.
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- 2023
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49. Neuromodulatory control of complex adaptive dynamics in the brain.
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Shine JM
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How is the massive dimensionality and complexity of the microscopic constituents of the nervous system brought under sufficiently tight control so as to coordinate adaptive behaviour? A powerful means for striking this balance is to poise neurons close to the critical point of a phase transition, at which a small change in neuronal excitability can manifest a nonlinear augmentation in neuronal activity. How the brain could mediate this critical transition is a key open question in neuroscience. Here, I propose that the different arms of the ascending arousal system provide the brain with a diverse set of heterogeneous control parameters that can be used to modulate the excitability and receptivity of target neurons-in other words, to act as control parameters for mediating critical neuronal order. Through a series of worked examples, I demonstrate how the neuromodulatory arousal system can interact with the inherent topological complexity of neuronal subsystems in the brain to mediate complex adaptive behaviour., Competing Interests: I declare I have no competing interests., (© 2023 The Author(s).)
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- 2023
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50. A whole new world: embracing the systems-level to understand the indirect impact of pathology in neurodegenerative disorders.
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Taylor NL and Shine JM
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- Humans, Brain pathology, Cognition, Neuropathology, Neurodegenerative Diseases, Parkinson Disease, Alzheimer Disease
- Abstract
The direct link between neuropathology and the symptoms that emerge from damage to the brain is often difficult to discern. In this perspective, we argue that a satisfying account of neurodegenerative symptoms most naturally emerges from the consideration of the brain from the systems-level. Specifically, we will highlight the role of the neuromodulatory arousal system, which is uniquely positioned to coordinate the brain's ability to flexibly integrate the otherwise segregated structures required to support higher cognitive functions. Importantly, the neuromodulatory arousal system is highly heterogeneous, encompassing structures that are common sites of neurodegeneration across Alzheimer's and Parkinson's disease. We will review studies that implicate the dysfunctional interactions amongst distributed brain regions as a side-effect of pathological involvement of the neuromodulatory arousal system in these neurodegenerative disorders. From this perspective, we will argue that future work in clinical neuroscience should attempt to consider the inherent complexity in the brain and employ analytic techniques that do not solely focus on regional functional impairments, but rather captures the brain as an inherently dynamic, distributed, multi-scale system. Through this lens, we hope that we will devise new and improved diagnostic markers and interventional approaches to aid in the treatment of neurodegenerative disorders., (© 2022. Crown.)
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- 2023
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