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Aim: Climate change is an increasingly important driver of biodiversity loss. The ectothermic nature of amphibians may make them particularly sensitive to changes in temperature and precipitation regimes, adding to declines from other threats. While active season environmental conditions can influence growth and survival, effects of variation in winter conditions on population dynamics are less well‐studied. Given that extreme winter temperatures can influence amphibian survival and fitness, we expected that increased winter severity—as measured by variability in winter temperatures and snow cover—would be associated with decreased occupancy, and that populations that experience more severe winters would have the largest sensitivities and show the greatest declines. Location: Eastern United States. Time period: 2001–2015. Major taxa studied: Anurans. Methods: We used large‐scale citizen science data from the eastern half of the United States, a diverse biogeographic and climatic region, to assess how variation in winter severity influenced occupancy dynamics (i.e. presence or absence of species across sites and years) of 11 spring and summer breeding anuran species. Results: Most species had increased occupancy in years with greater than average snow cover and warmer than average mean winter temperatures. Surprisingly, climatic conditions in winter affected occupancy dynamics of species with varying life history characteristics, including both spring and summer breeding species, those that overwinter under the soil, and those that overwinter in ponds and stream beds. For two wide‐ranging species (Lithobates catesbeianus and Lithobates clamitans), colder winter temperatures reduced occupancy more at northern latitudes, while the association between days of snow cover and latitude was equivocal. Main conclusions As the climate continues to change, expected reductions in snowpack may reduce occupancy of already declining anuran populations, while milder winters may improve overwinter survival for some species. The contradictory impacts of temperature and snow cover illustrate the importance of considering multi‐dimensional impacts of climate change on anuran populations. [ABSTRACT FROM AUTHOR]

Permafrost currently stores more than a fourth of global soil carbon. A warming climate makes this carbon increasingly vulnerable to decomposition and release into the atmosphere in the form of greenhouse gases. The resulting climate feedback can be estimated using land surface models, but the high complexity and computational cost of these models make it challenging to use them for estimating uncertainty, exploring novel scenarios, and coupling with other models. We have added a representation of permafrost to the simple, open-source global carbon–climate model Hector, calibrated to be consistent with both historical data and 21st century Earth system model projections of permafrost thaw. We include permafrost as a separate land carbon pool that becomes available for decomposition into both methane (CH 4) and carbon dioxide (CO 2) once thawed; the thaw rate is controlled by region-specific air temperature increases from a preindustrial baseline. We found that by 2100 thawed permafrost carbon emissions increased Hector's atmospheric CO 2 concentration by 5 %–7 % and the atmospheric CH 4 concentration by 7 %–12 %, depending on the future scenario, resulting in 0.2–0.25 ∘ C of additional warming over the 21st century. The fraction of thawed permafrost carbon available for decomposition was the most significant parameter controlling the end-of-century temperature change in the model, explaining around 70 % of the temperature variance, and was distantly followed by the initial stock of permafrost carbon, which contributed to about 10 % of the temperature variance. The addition of permafrost in Hector provides a basis for the exploration of a suite of science questions, as Hector can be cheaply run over a wide range of parameter values to explore uncertainty and can be easily coupled with integrated assessment and other human system models to explore the economic consequences of warming from this feedback. [ABSTRACT FROM AUTHOR]

Canopy radiative transfer is the primary mechanism by which models relate vegetation composition and state to the surface energy balance, which is important to light- and temperature-sensitive plant processes as well as understanding land–atmosphere feedbacks. In addition, certain parameters (e.g., specific leaf area, SLA) that have an outsized influence on vegetation model behavior can be constrained by observations of shortwave reflectance, thus reducing model predictive uncertainty. Importantly, calibrating against radiative transfer outputs allows models to directly use remote sensing reflectance products without relying on highly derived products (such as MODIS leaf area index) whose assumptions may be incompatible with the target vegetation model and whose uncertainties are usually not well quantified. Here, we created the EDR model by coupling the two-stream representation of canopy radiative transfer in the Ecosystem Demography model version 2 (ED2) with a leaf radiative transfer model (PROSPECT-5) and a simple soil reflectance model to predict full-range, high-spectral-resolution surface reflectance that is dependent on the underlying ED2 model state. We then calibrated this model against estimates of hemispherical reflectance (corrected for directional effects) from the NASA Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and survey data from 54 temperate forest plots in the northeastern United States. The calibration significantly reduced uncertainty in model parameters related to leaf biochemistry and morphology and canopy structure for five plant functional types. Using a single common set of parameters across all sites, the calibrated model was able to accurately reproduce surface reflectance for sites with highly varied forest composition and structure. However, the calibrated model's predictions of leaf area index (LAI) were less robust, capturing only 46 % of the variability in the observations. Comparing the ED2 radiative transfer model with another two-stream soil–leaf–canopy radiative transfer model commonly used in remote sensing studies (PRO4SAIL) illustrated structural errors in the ED2 representation of direct radiation backscatter that resulted in systematic underestimation of reflectance. In addition, we also highlight that, to directly compare with a two-stream radiative transfer model like EDR, we had to perform an additional processing step to convert the directional reflectance estimates of AVIRIS to hemispherical reflectance (also known as "albedo"). In future work, we recommend that vegetation models add the capability to predict directional reflectance, to allow them to more directly assimilate a wide range of airborne and satellite reflectance products. We ultimately conclude that despite these challenges, using dynamic vegetation models to predict surface reflectance is a promising avenue for model calibration and validation using remote sensing data. [ABSTRACT FROM AUTHOR]

Permafrost, soil that remains below 0 °C for two or more years, currently stores more than a fourth of global soil carbon. A warming climate makes this carbon increasingly vulnerable to decomposition and release into the atmosphere in the form of greenhouse gases. The resulting climate feedback can be estimated using Earth system models (ESMs), but the high complexity and computational cost of these models make it challenging to use them for estimating uncertainty, exploring novel scenarios, and coupling with other models. We have added a representation of permafrost to the simple, open-source global carbon-climate model Hector, calibrated to be consistent with both historical data and twenty-first century ESM projections of permafrost thaw. We include permafrost as a separate land carbon pool that becomes available for decomposition into both methane and carbon dioxide once thawed; the thaw rate is controlled by region-specific air temperature increases from a pre-industrial baseline. We found that by 2100 thawed permafrost carbon emissions increased Hector's atmospheric carbon dioxide concentration by 10-15 % and the atmospheric methane concentration by 10-20 %, depending on the future scenario. This resulted in around 0.5 °C of additional warming over the next century. The fraction of thawed permafrost carbon available for decomposition was the most significant parameter controlling the end-of-century temperature change and atmospheric carbon dioxide concentration in the model and became increasingly significant over even longer timescales. The addition of permafrost in Hector provides a basis for the exploration of a suite of science questions, as Hector can be cheaply run over a wide range of parameter values to explore uncertainty and easily coupled with integrated assessment models to explore the economic consequences of warming from this feedback. [ABSTRACT FROM AUTHOR]

Secondary forest regrowth shapes community succession and biogeochemistry for decades, including in the Upper Great Lakes region. Vegetation models encapsulate our understanding of forest function, and whether models can reproduce multi‐decadal succession patterns is an indication of our ability to predict forest responses to future change. We test the ability of a vegetation model to simulate C cycling and community composition during 100 years of forest regrowth following stand‐replacing disturbance, asking (a) Which processes and parameters are most important to accurately model Upper Midwest forest succession? (b) What is the relative importance of model structure versus parameter values to these predictions? We ran ensembles of the Ecosystem Demography model v2.2 with different representations of processes important to competition for light. We compared the magnitude of structural and parameter uncertainty and assessed which sub‐model–parameter combinations best reproduced observed C fluxes and community composition. On average, our simulations underestimated observed net primary productivity (NPP) and leaf area index (LAI) after 100 years and predicted complete dominance by a single plant functional type (PFT). Out of 4,000 simulations, only nine fell within the observed range of both NPP and LAI, but these predicted unrealistically complete dominance by either early hardwood or pine PFTs. A different set of seven simulations were ecologically plausible but under‐predicted observed NPP and LAI. Parameter uncertainty was large; NPP and LAI ranged from ~0% to >200% of their mean value, and any PFT could become dominant. The two parameters that contributed most to uncertainty in predicted NPP were plant–soil water conductance and growth respiration, both unobservable empirical coefficients. We conclude that (a) parameter uncertainty is more important than structural uncertainty, at least for ED‐2.2 in Upper Midwest forests and (b) simulating both productivity and plant community composition accurately without physically unrealistic parameters remains challenging for demographic vegetation models. [ABSTRACT FROM AUTHOR]

Ecosystem models are often calibrated and/or validated against derived remote sensing data products, such as MODIS leaf area index. However, these data products are generally based on their own models, whose assumptions may not be compatible with those of the ecosystem model in question, and whose uncertainties are usually not well quantified. Here, we develop an alternative approach whereby we modify an ecosystem model to predict full-range, high spectral resolution surface reflectance, which can then be compared directly against airborne and satellite data. Specifically, we coupled the two-stream representation of canopy radiative transfer in the Ecosystem Demography model (ED2) with a leaf radiative transfer model (PROSPECT 5) and a simple soil reflectance model. We then calibrated this model against reflectance observations from the NASA Airborne VIsible/InfraRed Imaging Spectrometer (AVIRIS) and survey data from 54 temperate forest plots in the northeastern United States. The calibration successfully constrained the posterior distributions of model parameters related to leaf biochemistry and morphology and canopy structure for five plant functional types. The calibrated model was able to accurately reproduce surface reflectance and leaf area index for sites with highly varied forest composition and structure, using a single common set of parameters across all sites. We conclude that having dynamic vegetation models directly predict surface reflectance is a promising avenue for model calibration and validation using remote sensing data. [ABSTRACT FROM AUTHOR]

The remote monitoring of plant canopies is critically needed for understanding of terrestrial ecosystem mechanics and biodiversity as well as capturing the short- to long-term responses of vegetation to disturbance and climate change. A variety of orbital, sub-orbital, and field instruments have been used to retrieve optical spectral signals and to study different vegetation properties such as plant biochemistry, nutrient cycling, physiology, water status, and stress. Radiative transfer models (RTMs) provide a mechanistic link between vegetation properties and observed spectral features, and RTM spectral inversion is a useful framework for estimating these properties from spectral data. However, existing approaches to RTM spectral inversion are typically limited by the inability to characterize uncertainty in parameter estimates. Here, we introduce a Bayesian algorithm for the spectral inversion of the PROSPECT 5 leaf RTM that is distinct from past approaches in two important ways: First, the algorithm only uses reflectance and does not require transmittance observations, which have been plagued by a variety of measurement and equipment challenges. Second, the output is not a point estimate for each parameter but rather the joint probability distribution that includes estimates of parameter uncertainties and covariance structure. We validated our inversion approach using a database of leaf spectra together with measurements of equivalent water thickness (EWT) and leaf dry mass per unit area (LMA). The parameters estimated by our inversion were able to accurately reproduce the observed reflectance (RMSE VIS = 0.0063, RMSE NIR-SWIR = 0.0098) and transmittance (RMSE VIS = 0.0404, RMSE NIR-SWIR = 0.0551) for both broadleaved and conifer species. Inversion estimates of EWT and LMA for broadleaved species agreed well with direct measurements (CV EWT = 18.8%, CV LMA = 24.5%), while estimates for conifer species were less accurate (CV EWT = 53.2%, CV LMA = 63.3%). To examine the influence of spectral resolution on parameter uncertainty, we simulated leaf reflectance as observed by ten common remote sensing platforms with varying spectral configurations and performed a Bayesian inversion on the resulting spectra. We found that full-range hyperspectral platforms were able to retrieve all parameters accurately and precisely, while the parameter estimates of multispectral platforms were much less precise and prone to bias at high and low values. We also observed that variations in the width and location of spectral bands influenced the shape of the covariance structure of parameter estimates. Our Bayesian spectral inversion provides a powerful and versatile framework for future RTM development and single- and multi-instrumental remote sensing of vegetation. [ABSTRACT FROM AUTHOR]

Summary: Leaf traits are essential for understanding many physiological and ecological processes. Partial least squares regression (PLSR) models with leaf spectroscopy are widely applied for trait estimation, but their transferability across space, time, and plant functional types (PFTs) remains unclear.We compiled a novel dataset of paired leaf traits and spectra, with 47 393 records for > 700 species and eight PFTs at 101 globally distributed locations across multiple seasons. Using this dataset, we conducted an unprecedented comprehensive analysis to assess the transferability of PLSR models in estimating leaf traits.While PLSR models demonstrate commendable performance in predicting chlorophyll content, carotenoid, leaf water, and leaf mass per area prediction within their training data space, their efficacy diminishes when extrapolating to new contexts. Specifically, extrapolating to locations, seasons, and PFTs beyond the training data leads to reduced R2 (0.12–0.49, 0.15–0.42, and 0.25–0.56) and increased NRMSE (3.58–18.24%, 6.27–11.55%, and 7.0–33.12%) compared with nonspatial random cross‐validation. The results underscore the importance of incorporating greater spectral diversity in model training to boost its transferability.These findings highlight potential errors in estimating leaf traits across large spatial domains, diverse PFTs, and time due to biased validation schemes, and provide guidance for future field sampling strategies and remote sensing applications. [ABSTRACT FROM AUTHOR]

Biodiversity projections with uncertainty estimates under different climate, land-use, and policy scenarios are essential to setting and achieving international targets to mitigate biodiversity loss. Evaluating and improving biodiversity predictions to better inform policy decisions remains a central conservation goal and challenge. A comprehensive strategy to evaluate and reduce uncertainty of model outputs against observed measurements and multiple models would help to produce more robust biodiversity predictions. We propose an approach that integrates biodiversity models and emerging remote sensing and in-situ data streams to evaluate and reduce uncertainty with the goal of improving policy-relevant biodiversity predictions. In this article, we describe a multivariate approach to directly and indirectly evaluate and constrain model uncertainty, demonstrate a proof of concept of this approach, embed the concept within the broader context of model evaluation and scenario analysis for conservation policy, and highlight lessons from other modeling communities. [ABSTRACT FROM AUTHOR]

In an era of rapid global change, our ability to understand and predict Earth's natural systems is lagging behind our ability to monitor and measure changes in the biosphere. Bottlenecks to informing models with observations have reduced our capacity to fully exploit the growing volume and variety of available data. Here, we take a critical look at the information infrastructure that connects ecosystem modeling and measurement efforts, and propose a roadmap to community cyberinfrastructure development that can reduce the divisions between empirical research and modeling and accelerate the pace of discovery. A new era of data‐model integration requires investment in accessible, scalable, and transparent tools that integrate the expertise of the whole community, including both modelers and empiricists. This roadmap focuses on five key opportunities for community tools: the underlying foundations of community cyberinfrastructure; data ingest; calibration of models to data; model‐data benchmarking; and data assimilation and ecological forecasting. This community‐driven approach is a key to meeting the pressing needs of science and society in the 21st century. [ABSTRACT FROM AUTHOR]

The pre-disturbance vegetation characteristics that predict carbon (C) cycling responses to disturbance are not well known. To address this gap, we initiated the Forest Resilience Threshold Experiment, a manipulative study in which more than 3600 trees were stem girdled to achieve replicated factorial combinations of four levels (control, 45, 65, and 85% gross defoliation) of disturbance severity and two disturbance types (targeting upper or lower canopy strata). Applying a standardized stability framework in which initial C cycling resistance to disturbance was calculated as the first-year natural log response ratio of disturbance and control treatments, we investigated to what extent pre-disturbance levels of species diversity, aboveground woody biomass, leaf area index, and canopy rugosity—a measure of structural complexity—predict the initial responses of subcanopy light-saturated leaf CO2 assimilation (Asat), aboveground wood NPP (ANPPw), and soil respiration (Rs) to phloem-disrupting disturbance. In the year following stem girdling, we found that above-ground C cycling processes, Asat and ANPPw, were highly resistant to increases in disturbance severity, while Rs resistance declined as severity increased. Disturbance type had no effect on first-year resistance. Pre-disturbance aboveground woody biomass, and canopy rugosity were positive predictors of ANPPw resistance and, conversely, negatively related to Rs resistance. Subcanopy Asat resistance was not related to pre-disturbance vegetation characteristics. Stability of C uptake processes along with Rs declines suggest the net C sink was sustained in the initial months following disturbance. We conclude that biomass and complexity are significant, but not universal, predictors of initial C cycling resistance to disturbance. Moreover, our findings highlight the utility of standardized stability measures when comparing functional responses to disturbance. [ABSTRACT FROM AUTHOR]

Here we present results from the first phase of the Reduced Complexity Model Intercomparison Project (RCMIP). RCMIP is a systematic examination of reduced complexity climate models (RCMs), which are used to complement and extend the insights from more complex Earth System Models (ESMs), in particular those participating in the Sixth Coupled Model Intercomparison Project (CMIP6). In Phase 1 of RCMIP, with 14 participating models namely ACC2, AR5IR (2 and 3 box versions), CICERO-SCM, ESCIMO, FaIR, GIR, GREB, Hector, Held et al. two layer model, MAGICC, MCE, OSCAR and WASP, we highlight the structural differences across various RCMs and show that RCMs are capable of reproducing global-mean surface air temperature (GSAT) changes of ESMs and historical observations. We find that some RCMs are capable of emulating the GSAT response of CMIP6 models to within a root-mean square error of 0.2°C (of the same order of magnitude as ESM internal variability) over a range of scenarios. Running the same model configurations for both RCP and SSP scenarios, we see that the SSPs exhibit higher effective radiative forcing throughout the second half of the 21st Century. Comparing our results to the difference between CMIP5 and CMIP6 output, we find that the change in scenario explains approximately 46% of the increase in higher end projected warming between CMIP5 and CMIP6. This suggests that changes in ESMs from CMIP5 to CMIP6 explain the rest of the increase, hence the higher climate sensitivities of available CMIP6 models may not be having as large an impact on GSAT projections as first anticipated. A second phase of RCMIP will complement RCMIP Phase 1 by exploring probabilistic results and emulation in more depth to provide results available for the IPCC's Sixth Assessment Report author teams. [ABSTRACT FROM AUTHOR]

Summary: Destruction of tropical rainforests reduces many unprotected habitats to small fragments of remnant forests within agricultural matrices. To date, these remnant forest fragments have been largely disregarded as wildlife habitat, and little is known about mammalian use of these areas in Sumatra. Here, we conducted camera trap surveys (2285 trap-nights) within Bukit Barisan Selatan National Park and five surrounding remnant forest fragments during 2010–2013 and used species composition metrics to compare use. We found 28 mammal species in the protected forest and 21 in the fragments. The fragments harboured a subset of species found in the protected forest and several species not observed in the protected forest. Critically endangered species such as Sunda pangolin (Manis javanica) and Sumatran tiger (Panthera tigris sumatrae) were found in the forest fragments, along with species of conservation concern such as marbled cat (Pardofelis marmorata) and Asiatic golden cat (Pardofelis temminckii). The biodiversity found within the fragments suggests that these small patches of remnant forest may have conservation value to certain mammal species and indicates the importance of further research into the role these habitats may play in landscape-level, multispecies conservation planning. [ABSTRACT FROM AUTHOR]