174 results on '"Shihong Yang"'
Search Results
2. Single-cell analysis of the CD8+ T-cell compartment in multiple myeloma reveals disease specific changes are chiefly restricted to a CD69- subset suggesting potent cytotoxic effectors exist within the tumor bed
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James Favaloro, Christian E. Bryant, Edward Abadir, Samuel Gardiner, Shihong Yang, Tracy King, Najah Nassif, Lisa M. Sedger, Richard Boyle, Douglas E. Joshua, and P. Joy Ho
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Multiple myeloma (MM) is an incurable disease of the bone marrow (BM) characterized by the uncontrolled proliferation of neoplastic plasma cells. While CD8+ T cells have an established role in disease control, few studies have focused on these cells within the MM tumor microenvironment (TME). We analyzed CD8+ T cells in the BM and peripheral blood (PB) of untreated patients with MM and non-myeloma controls using flow cytometry, mass cytometry and single-cell RNA sequencing, using several novel bioinformatics workflows. Inter-tissue differences were most evident in the differential expression of Granzymes B and K, which were strongly associated with two distinct subsets of CD8+ T cells delineated by the expression of CD69, accounting for roughly 50% of BM-CD8+ T cells of all assessed cohorts. While few differences were observable between health and disease in the BM-restricted CD8CD69+ T-cell subset, the CD8+CD69- T-cell subset in the BM of untreated MM patients demonstrated increased representation of highly differentiated effector cells and evident compositional parallels between the PB, absent in age-matched controls, where a marked reduction of effector cells was observed. We demonstrate the transcriptional signature of BM-CD8+ T cells from patients with MM more closely resembles TCR-activated CD8+ T cells from age-matched controls than their resting counterparts.
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- 2023
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3. PB2495: QUANTIFICATION AND IMMUNOPHENOTYPIC CHARACTERISATION OF CAR T-CELLS BY FLOW CYTOMETRY AND CORRELATION WITH CLINICAL OUTCOMES FOR PATIENTS WITH LARGE B CELL LYMPHOMA
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Rebecca Wayte, Shihong Yang, Vinay Vanguru, James Favaloro, Christian Bryant, Stephen Larsen, Scott Dunkley, Christina Brown, Katrina Debosz, Elizabeth Reaiche, Emily Anderson, P. Joy Ho, and Edward Abadir
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2023
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4. Simulating soil salinity dynamics, cotton yield and evapotranspiration under drip irrigation by ensemble machine learning
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Zewei Jiang, Shihong Yang, Shide Dong, Qingqing Pang, Pete Smith, Mohamed Abdalla, Jie Zhang, Guangmei Wang, and Yi Xu
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salinity ,evapotranspiration ,drip irrigation ,cotton ,ensemble machine learning ,Plant culture ,SB1-1110 - Abstract
Cotton is widely used in textile, decoration, and industry, but it is also threatened by soil salinization. Drip irrigation plays an important role in improving water and fertilization utilization efficiency and ensuring crop production in arid areas. Accurate prediction of soil salinity and crop evapotranspiration under drip irrigation is essential to guide water management practices in arid and saline areas. However, traditional hydrological models such as Hydrus require more variety of input parameters and user expertise, which limits its application in practice, and machine learning (ML) provides a potential alternative. Based on a global dataset collected from 134 pieces of literature, we proposed a method to comprehensively simulate soil salinity, evapotranspiration (ET) and cotton yield. Results showed that it was recommended to predict soil salinity, crop evapotranspiration and cotton yield based on soil data (bulk density), meteorological factors, irrigation data and other data. Among them, meteorological factors include annual average temperature, total precipitation, year. Irrigation data include salinity in irrigation water, soil matric potential and irrigation water volume, while other data include soil depth, distance from dripper, days after sowing (for EC and soil salinity), fertilization rate (for yield and ET). The accuracy of the model has reached a satisfactory level, R2 in 0.78-0.99. The performance of stacking ensemble ML was better than that of a single model, i.e., gradient boosting decision tree (GBDT); random forest (RF); extreme gradient boosting regression (XGBR), with R2 increased by 0.02%-19.31%. In all input combinations, other data have a greater impact on the model accuracy, while the RMSE of the S1 scenario (input without meteorological factors) without meteorological data has little difference, which is -34.22%~19.20% higher than that of full input. Given the wide application of drip irrigation in cotton, we recommend the application of ensemble ML to predict soil salinity and crop evapotranspiration, thus serving as the basis for adjusting the irrigation schedule.
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- 2023
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5. Effects of Irrigation and Fertilization Management on Yield and Quality of Rice and the Establishment of a Quality Evaluation System
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Jiazhen Hu, Shuna Zhang, Shihong Yang, Jiaoyan Zhou, Zewei Jiang, Suting Qi, and Yi Xu
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comprehensive evaluation ,enzyme activity ,optimal management ,quality ,yield ,Agriculture - Abstract
Yield and rice quality indicators of crops are a direct reflection of the rational irrigation and fertilizer strategy. However, the effects of controlled irrigation (CI) combined with the split application of fertilization managements (straw returning, organic fertilizer, and conventional fertilizer) on rice quality are not clear in southeast China. This study aims at exploring the effects of three fertilization managements applied under CI or flooding irrigation on rice yield, quality, enzyme activity, and soluble sugar content including 43 indicators, to determine the optimal comprehensive evaluation model, management, and representative indexes. The results showed that compared with CF (CI + conventional fertilizer), CS (CI + straw returning) significantly increased yield (27.65%), irrigation water use efficiency (6.20%), chalky grain rate (9.67%), chalkiness (1.83%), protein content (4.29%), and amylose content (0.33%), indicating that CS improved yield and milling quality but decreased cooking and appearance quality. This was mainly because CS promoted the activities of alpha-amylase, ADPG (ADP-glucose pyrophosphorylase), and GBSS (granule-bound starch synthase) and reduced the soluble sugar content in rice. Grey relational degree analysis (GRD), the entropy method (ETM), and TOPSIS (the technique for order preference by similarity to an ideal solution) were used to comprehensively evaluate the rice quality and determined that CS treatments could synergistically improve yield and rice quality. The five indexes (adhesive strength, HPV, ADPG, soluble sugar (leaf), yield) and TOPSIS model can be used as the best indexes and model to evaluate the rice quality. These results could provide scientific management and evaluate practices for high-yield and high-quality rice cultivation, which may be promising for a cleaner production strategy.
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- 2023
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6. A general non-rectangular hyperbola equation for photosynthetic light response curve of rice at various leaf ages
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Junzeng Xu, Yuping Lv, Xiaoyin Liu, Qi Wei, Zhiming Qi, Shihong Yang, and Linxian Liao
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Medicine ,Science - Abstract
Abstract Photosynthetic light response (PLR) curves of leaves are usually fitted by non-rectangular hyperbola (NRH) equation, and those fitted NRH parameters may change with leaf aging. The objectives of this study were 1) to reveal the response of NRH parameters of rice leaves, light-saturated net photosynthetic rate (P nmax), quantum yield of assimilation (φ), dark respiration rate (R d) and convexity of the curve (k), to leaf age; and 2) to improve the performance of NRH equation in simulating the PLR curves for leaves at various ages. The PLR for rice leaves at ages of 3–53 days were measured, and the general NRH equation was developed by incorporating the relationship between NRH parameters and leaf age into the NRH equation. The results showed that the NRH parameters of P nmax, φ and R d increased rapidly to maximum at approximately 10 days and then declined linearly toward the age of 53 days. However, the value of k was not sensitive to leaf age. The general NRH equation can be used to simulate leaf PLR continuously along with leaf aging.
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- 2019
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7. Effect of Irrigation and Fertilizer Management on Rice Yield and Nitrogen Loss: A Meta-Analysis
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Haonan Qiu, Shihong Yang, Zewei Jiang, Yi Xu, and Xiyun Jiao
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irrigation schedule ,nitrogen application ,water–nitrogen coupling ,yield ,nitrogen loss ,Botany ,QK1-989 - Abstract
Irrigation and nitrogen fertilizer application are two important factors affecting yield and nitrogen loss in rice fields; however, the interaction effects of different irrigation schedules and combined management of nitrogen fertilizer application on yield and nitrogen loss in rice fields remain unknown. Therefore, we collected 327 sets of data on rice yield and 437 sets of data on nitrogen loss in rice fields from 2000 to 2021 and investigated the effects of different water-saving irrigation schedules, nitrogen application levels, and water–nitrogen couplings on rice yield, nitrogen use efficiency, and nitrogen loss (N2O emissions, nitrogen runoff, nitrogen leaching, and ammonia volatilization) by meta-analysis using conventional flooding irrigation and no nitrogen treatment as controls. The results showed that alternate wet and dry irrigation and controlled irrigation had increasing effects on rice yield. Alternate wet and dry irrigation had a significant yield-increasing effect (average 2.57% increase) and dry cultivation significantly reduced rice yield with an average 21.25% yield reduction. Water-saving irrigation reduces nitrogen runoff and leaching losses from rice fields but increases N2O emissions, and alternate wet and dry irrigation has a significant effect on increasing N2O emissions, with an average increase of 67.77%. Most water-saving irrigation can increase nitrogen use efficiency. Among water-saving irrigation methods, the effect of controlled irrigation on increasing nitrogen use efficiency is 1.06%. Rice yield and nitrogen use efficiency both showed a trend of increasing then decreasing with nitrogen fertilizer application, and nitrogen loss gradually increased with the amount of nitrogen fertilizer input. Water–nitrogen coupling management can significantly reduce nitrogen loss in rice fields while saving water and increasing yield. Based on the analysis of the data in this study, when the irrigation amount was 300~350 mm and the nitrogen application amount was 200~250 kg/ha, the rice yield and nitrogen fertilizer use efficiency were at a high level, which corresponded to the irrigation schedule of controlled irrigation or alternating wet and dry irrigation in the literature. However, different rice-growing areas are affected by rainfall and land capability, etc. Further optimization and correction of the adapted water and fertilizer management system for paddy fields are needed. The optimal water–nitrogen pattern of this study can achieve high rice yield and reduce nitrogen loss.
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- 2022
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8. Treg and Oligoclonal Expansion of Terminal Effector CD8+ T Cell as Key Players in Multiple Myeloma
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Douglas E. Joshua, Slavica Vuckovic, James Favaloro, Ka Hei Aleks Lau, Shihong Yang, Christian E. Bryant, John Gibson, and Phoebe Joy Ho
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T cells ,myeloma ,oligoclonal expansions ,CD69+TTE ,CD39-Treg ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The classical paradigm of host-tumor interaction, i.e. elimination, equilibrium, and escape (EEE), is reflected in the clinical behavior of myeloma which progresses from the premalignant condition, Monoclonal Gammopathy of Unknown Significance (MGUS). Despite the role of other immune cells, CD4+ regulatory T cells (Treg) and cytotoxic CD8+ T cells have emerged as the dominant effectors of host control of the myeloma clone. Progression from MGUS to myeloma is associated with alterations in Tregs and terminal effector CD8+ T cells (TTE). These changes involve CD39 and CD69 expression, affecting the adenosine pathway and residency in the bone marrow (BM) microenvironment, together with oligoclonal expansion within CD8+ TTE cells. In this mini-review article, in the context of earlier data, we summarize our recent understanding of Treg involvement in the adenosine pathway, the significance of oligoclonal expansion within CD8+ TTE cells and BM-residency of CD8+ TTE cells in MGUS and newly diagnosed multiple myeloma patients.
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- 2021
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9. Optimal Operation Model of Drainage Works for Minimizing Waterlogging Loss in Paddy Fields
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Zhenyang Liu, Yujiang Xiong, Juzeng Xu, Shihong Yang, Zewei Jiang, and Fangping Liu
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optimal operation ,waterlogging ,modeling ,paddy field drainage ,Hydraulic engineering ,TC1-978 ,Water supply for domestic and industrial purposes ,TD201-500 - Abstract
The risk of flood or waterlogging in irrigation districts has increased due to global climate change and intensive human activities. A Model of Optimal Operation of Drainage Works (MOODW) for flat irrigation district was established by incorporating the hydrological model of waterlogging process and waterlogging loss estimation, which was solved by an optimization method of genetic algorithm. The model of waterlogging process was built based on a modified Tank model and hydrodynamic model for the ditch-river system. The waterlogging loss is calculated under the condition of inconstant inundated depth by linear interpolation. The adaptive genetic algorithm with the global optimization function was selected to solve the model. With an extreme rainfall events in Gaoyou irrigation district as cases, results showed that operation time and numbers of pumps increased; thus, operating costs were 1.4 times higher than before, but the yield loss of rice decreased by 35.4% observably. Finally, the total waterlogging loss was reduced by 33.8% compared with the traditional operation of waterlogging work. The most significant improvement was found in units with high waterlogging vulnerability. The MOODW can provide the waterlogging information visually and assist the district manager in making a reasonable decision.
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- 2021
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10. Organic carbon content and its liable components in paddy soil under water-saving irrigation
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Yan MA, Junzeng XU, Qi WEI, Shihong YANG, Linxian LIAO, Suyan CHEN, and Qi LIAO
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water management ,drying-wetting cycle ,precipitation ,soil carbon sequestration ,soil respiration ,Plant culture ,SB1-1110 - Abstract
Variation of soil organic carbon (SOC) and its liable fractions under non-flooding irrigation (NFI) were investigated. In NFI paddies, the soil microbial biomass carbon (SMBC) and water extractable organic carbon (SWEC) content in 0-40 cm soil increased by 1.73-21.74% and 1.44-30.63%, and SOC in NFI fields decreased by 0.90-18.14% than in flooding irrigation (FI) fields. As a result, the proportion of SMBC or SWEC to SOC increased remarkably. It is attributed to the different water and aeration conditions between FI and NFI irrigation. The non-flooding water-saving irrigation increased soil microbial activity and mineralization of SOC, which broke down more soil organic nutrients into soluble proportion and is beneficial for soil fertility, but might lead to more CO2 emission and degradation in carbon sequestration than FI paddies.
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- 2017
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11. Mass Cytometry Discovers Two Discrete Subsets of CD39−Treg Which Discriminate MGUS From Multiple Myeloma
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Felix Marsh-Wakefield, Annabel Kruzins, Helen M. McGuire, Shihong Yang, Christian Bryant, Barbara Fazekas de St. Groth, Najah Nassif, Scott N. Byrne, John Gibson, Christina Brown, Stephen Larsen, Derek McCulloch, Richard Boyle, Georgina Clark, Douglas Joshua, Phoebe Joy Ho, and Slavica Vuckovic
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MGUS ,multiple myeloma ,mass cytometry ,FlowSom ,Treg ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Multiple Myeloma (MM) is preceded by the clinically stable condition monoclonal gammopathy of undetermined significance (MGUS). Critical immune events that discriminate MGUS from newly diagnosed MM (ND)MM patients remain unknown, but may involve changes in the regulatory T cell (Treg) compartment that favor myeloma growth. To address this possibility, we used mass cytometry and the unsupervised clustering algorithm Flow self-organizing map (FlowSOM) to interrogate the distribution of multiple subsets within CD25+CD127low/negTreg in matched bone marrow (BM) and peripheral blood (PB) of MGUS and NDMM patients. Both mass cytometry and flow cytometry confirmed a trend toward prevalence of CD39−Treg within the Treg compartment in BM and PB of NDMM patients compared to CD39−Treg in MGUS patients. FlowSOM clustering displayed a phenotypic organization of Treg into 25 metaclusters that confirmed Treg heterogeneity. It identified two subsets which emerged within CD39−Treg of NDMM patients that were negligible or absent in CD39−Treg of MGUS patients. One subset was found in both BM and PB which phenotypically resembled activated Treg based on CD45RO, CD49d, and CD62L expression; another subset resembled BM-resident Treg based on its tissue-resident CD69+CD62L−CD49d− phenotype and restricted location within the BM. Both subsets co-expressed PD-1 and TIGIT, but PD-1 was expressed at higher levels on BM-resident Treg than on activated Treg. Within BM, both subsets had limited Perforin and Granzyme B production, whilst activated Treg in PB acquired high Perforin and Granzyme B production. In conclusion, the use of mass cytometry and FlowSOM clustering discovered two discrete subsets of CD39−Treg which are discordant in MGUS and NDMM patients and may be permissive of myeloma growth which warrants further study. Understanding the regulatory properties of these subsets may also advance MGUS and MM diagnosis, prognosis, and therapeutic implications for MM patients.
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- 2019
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12. Effects of Biochar Addition on Rice Growth and Yield under Water-Saving Irrigation
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Xi Chen, Shihong Yang, Jie Ding, Zewei Jiang, and Xiao Sun
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water-saving irrigation ,biochar ,paddy field ,yield ,irrigation water use efficiency ,Hydraulic engineering ,TC1-978 ,Water supply for domestic and industrial purposes ,TD201-500 - Abstract
To reveal the effect of biochar addition on rice growth and yield under water-saving irrigation, a 2-year field experiment was carried out to clarify the variations of rice tiller number, plant height, yield components, and irrigation water use efficiency with different biochar application amounts (0, 20, 40 t/ha) and irrigation management (flooding irrigation and water-saving irrigation). The results showed that the rice yield with biochar addition (20 and 40 t/ha) was 15.53% and 24.43% higher than that of non-biochar addition paddy fields under water-saving irrigation. The addition of biochar promoted the growth of tillers and plant height, improved the filled grain number, productive panicle number, and seed setting rate, thus affecting rice yield. Rice yield was raised with the increase in the biochar application amount. Under the condition of water-saving irrigation, water deficit had a certain negative effect on the rice growth indexes, resulting in a slight decrease in yield. However, irrigation water input was significantly decreased with water-saving irrigation compare to flooding irrigation. Under the comprehensive effect of water-saving irrigation and biochar application, the irrigation water use efficiency of a rice paddy field with high biochar application (40 t/ha) under water-saving irrigation was the highest, with an average increase of 91.05% compared to a paddy field with flooding irrigation. Therefore, the application of biochar in paddy fields with water-saving irrigation can substantially save irrigation water input, stably increase rice yield, and ultimately improve irrigation water productive efficiency.
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- 2021
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13. Effect of straw return on soil respiration and NEE of paddy fields under water-saving irrigation.
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Shihong Yang, Yanan Xiao, Junzeng Xu, and Xiaoyin Liu
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Medicine ,Science - Abstract
Straw return (SR) and rice water-saving irrigation (WSI) affect the greenhouse gas emission of paddy fields. However, studies on CO2 exchange between paddy fields and the atmosphere with joint regulation of SR and WSI are few. We conducted a two-year field experiment to investigate the effects of SR on soil respiration and net ecosystem exchange of CO2 (NEE) in paddy fields under controlled irrigation (CI), which is a typical WSI technique. The rice yields, irrigation water use efficiency, seasonal variations in soil respiration, NEE, and soil organic carbon content were measured. Compared with the control (flooding irrigation and traditional chemical fertilizer), a significant increase in rice yield and irrigation water use efficiency in the paddy fields under CI and SR joint management (CS) was observed. CS increased the soil respiration rate during most of the rice growth stage and increased the net CO2 absorption rate before approximately 80 days after transplanting; afterward, the pattern reversed. Total CO2 emissions through soil respiration in CS paddy fields increased by 43.7% and 182% compared with the control in 2014 and 2015, respectively. However, CS also caused an increase in the total net CO2 absorption by 18.1% and 30.1% in these two years, respectively. The acceleration in the consumption and decomposition of soil organic carbon induced by frequent alternate wet-dry cycles of the CI paddy fields increased the soil respiration and decreased the net CO2 absorption. SR promoted soil respiration but also improved rice growth, increasing the net CO2 absorption. The soil organic carbon content of the CS paddy fields after harvesting increased by 23.2% compared with that before transplanting. The present study concluded that joint regulation of WSI and SR is an effective measure for maintaining yield, increasing irrigation water use efficiency, mitigating CO2 emission, and promoting paddy soil fertility.
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- 2018
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14. Surface Energy Partitioning and Evaporative Fraction in a Water-Saving Irrigated Rice Field
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Xiaoyin Liu, Junzeng Xu, Shihong Yang, and Yuping Lv
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paddy field ,water-saving irrigation ,energy balance ,evaporative fraction ,energy partitioning ,Meteorology. Climatology ,QC851-999 - Abstract
Surface energy distribution in paddy fields and the ratio of latent heat flux (LE) to available energy, termed as the evaporative fraction (EF), are essential for an understanding of water and energy processes. They are expected to vary in different ways in response to changes in the soil moisture condition under water-saving irrigation practice. In this study, the diurnal and seasonal variations in energy distribution were examined based on the data measured by the eddy covariance system and corrected with enforcing energy balance closure by the EF method in water-saving irrigated rice paddies in 2015 and 2016. Soil heat flux (G) values were similar in magnitude to sensible heat flux (Hs) values, with both accounting for approximately 5% of the energy input. Both magnitudes of G and Hs were significantly lower than that of LE. Generally, EF in water-saving irrigated rice paddies was larger than that of other ecosystems, and varied within a narrow range from 0.7 to 1.0. Diurnally, EF decreased till noon and then increased slowly in the afternoon till sunset. It was found be less varied between 10:00 and 14:00. Seasonally, the alternative drying-wetting soil water conditions in water-saving irrigated rice paddies resulted in a change in the variation of the EF. The LE flux is the largest component of available energy, with EF being mostly higher than 0.9. EF, increasing consistently till the tillering stage, remaining high from the late tillering to milk stage, and then following a declining trend. The maximum EF (approaching 1.0) was found in the milk stage. The results of EF in water-saving irrigated rice paddies will be helpful for estimating daily or long temporal scale evapotranspiration (ET) by the EF method based on satellite-derived ET.
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- 2019
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15. Ammonia Volatilization Losses from Paddy Fields under Controlled Irrigation with Different Drainage Treatments
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Yupu He, Shihong Yang, Junzeng Xu, Yijiang Wang, and Shizhang Peng
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Technology ,Medicine ,Science - Abstract
The effect of controlled drainage (CD) on ammonia volatilization (AV) losses from paddy fields under controlled irrigation (CI) was investigated by managing water table control levels using a lysimeter. Three drainage treatments were implemented, namely, controlled water table depth 1 (CWT1), controlled water table depth 2 (CWT2), and controlled water table depth 3 (CWT3). As the water table control levels increased, irrigation water volumes in the CI paddy fields decreased. AV losses from paddy fields reduced due to the increases in water table control levels. Seasonal AV losses from CWT1, CWT2, and CWT3 were 59.8, 56.7, and 53.0 kg N ha−1, respectively. AV losses from CWT3 were 13.1% and 8.4% lower than those from CWT1 and CWT2, respectively. A significant difference in the seasonal AV losses was confirmed between CWT1 and CWT3. Less weekly AV losses followed by TF and PF were also observed as the water table control levels increased. The application of CD by increasing water table control levels to a suitable level could effectively reduce irrigation water volumes and AV losses from CI paddy fields. The combination of CI and CD may be a feasible water management method of reducing AV losses from paddy fields.
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- 2014
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16. Solubility and Leaching Risks of Organic Carbon in Paddy Soils as Affected by Irrigation Managements
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Junzeng Xu, Shihong Yang, Shizhang Peng, Qi Wei, and Xiaoli Gao
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Technology ,Medicine ,Science - Abstract
Influence of nonflooding controlled irrigation (NFI) on solubility and leaching risk of soil organic carbon (SOC) were investigated. Compared with flooding irrigation (FI) paddies, soil water extractable organic carbon (WEOC) and dissolved organic carbon (DOC) in NFI paddies increased in surface soil but decreased in deep soil. The DOC leaching loss in NFI field was 63.3 kg C ha−1, reduced by 46.4% than in the FI fields. It indicated that multi-wet-dry cycles in NFI paddies enhanced the decomposition of SOC in surface soils, and less carbon moved downward to deep soils due to less percolation. That also led to lower SOC in surface soils in NFI paddies than in FI paddies, which implied that more carbon was released into the atmosphere from the surface soil in NFI paddies. Change of solubility of SOC in NFI paddies might lead to potential change in soil fertility and sustainability, greenhouse gas emission, and bioavailability of trace metals or organic pollutants.
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- 2013
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17. A New Face Detection Framework Based on Adaptive Cascaded Network.
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Gangting Liu, Jianhong Lin, Yifan Ding, Shihong Yang, and Yunhua Xu
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- 2020
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18. Analysis of Carbon Flux Characteristics in Saline–Alkali Soil Under Global Warming.
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Haonan, Qiu, Shihong, Yang, Guangmei, Wang, Xiaoling, Liu, Jie, Zhang, Yi, Xu, Shide, Dong, Hanwen, Liu, and Zewei, Jiang
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GLOBAL warming , *GREENHOUSE gas mitigation , *AGRICULTURE , *CARBON cycle , *CARBON analysis , *SOYBEAN - Abstract
The carbon cycle of saline–alkali ecosystems will be affected to some extent in the context of future global warming. Therefore, we investigated the net ecosystem exchange (NEE) of three typical crops (wheat, maize and soybean) in the saline–alkaline land of the Yellow River Delta. To further investigate CO2 fluxes, NEE was decomposed into gross primary productivity (GPP) and ecosystem respiration (Re). In terms of seasonal variation, wheat and soybean were carbon sources in the early and late growth periods, and carbon sinks in the rest of the period, whereas maize was a carbon sink in the majority of the period, and maize had good carbon sink potential. The cumulative NEE during the growth periods for wheat, maize, and soybean were 414.86, 258.24 and 228.92 g cm−2, respectively, and the daily variation showed that the peak NEE values for the three crops preceded the peak values of both GPP and ecosystem respiration, occurring approximately at 12:00 a.m. In the correlation analysis, NEE and GPP of the three crops were well correlated with photosynthetic photon flux density and net radiation, whereas Re was significantly correlated with air temperature. Through a comparative analysis of CO2 fluxes within various agricultural ecosystems, our findings indicated that wheat demonstrated moderate carbon sequestration capabilities, whereas maize and soybean exhibited strong carbon sink characteristics. Notably, saline–alkali crops exhibited lower Re, whereas GPP levels remained at a moderate range. Therefore, under the global warming trend, the respiration of saline crops and soils will be affected and may change the original carbon sink into a carbon source. Hence, implementing suitable measures targeting saline–alkali areas, such as the establishment of an effective crop rotation system and the enhance saline–alkali land conditions, can reduce emissions of greenhouse gases, thus reducing the pressure of global warming and maintaining a stable carbon cycle in saline–alkali land. [ABSTRACT FROM AUTHOR]
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- 2024
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19. OsFKI encodes C-14 sterol reductase, which is involved in sterol biosynthesis and affects premature aging of leaves in rice.
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Ping Li, Xia Zhang, Wuzhong Yin, Yang Shui, Jie Zhang, Nana Xu, Dasong Bai, Qingxiong Huang, Yuanyuan Li, Pan Qi, Xing Li, Qianlong Li, Shihong Yang, Guotao Yang, Hong Chen, Peng Qin, Yungao Hu, and Youlin Peng
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PREMATURE aging (Medicine) ,PHYTOSTEROLS ,BIOSYNTHESIS ,RICE ,LEAF development ,PLANT development - Abstract
The enzyme C-14 sterol reductase is involved in biosynthesis of brassinosteroids (BR) and sterols, as well as plant development. OsFK1, a member of the sterol biosynthesis pathway located in the endoplasmic reticulum (ER), encodes C-14 sterol reductase. However, there is little research on the function of C-14 sterol reductase in rice. Compared with the wild type, an osfk1 mutant showed dwarf phenotype and premature aging in the second leaf during the trefoil stage, and abnormal development of leaf veins during the tillering stage. The osfk1 mutant showed signs of aberrant PCD, as evidenced by TUNEL staining. This suggested that high ROS buildup caused DNA damage and ROS-mediated cell death in the mutant. The osfk1 mutant also showed decreased chlorophyll content and aberrant chloroplast structure. Sequencing of the osfk1 mutant allele revealed a non-synonymous G to A mutation in the final intron, leading to early termination. Here, we identified the OsFK1 allele, cloned it by Mutmap sequencing, and verified it by complementation. HPLC-MS/MS assays demonstrated that the osfk1 mutation caused lower phytosterol levels. These findings showed that the OsFK1 allele encoding C-14 sterol reductase is involved in phytosterol biosynthesis and mediates normal development of rice plants. [ABSTRACT FROM AUTHOR]
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- 2024
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20. Optical, thermal properties, and hydrolysis resistance of transparent YF3-doped CaO ceramics fabricated by vacuum sintering
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Shihong Yang, Simin Chen, Lu Chen, Zhuangzhuang Ma, Jian Chen, and Wang Guo
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Process Chemistry and Technology ,Materials Chemistry ,Ceramics and Composites ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Published
- 2023
21. Partial substitution of chemical fertilizer by green manure increases succeeding maize yield and annual economic benefit in low-yield cropland in the Yellow River Delta.
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Shide Dong, Guowei Gai, Yiming Shi, Haibo Zhang, Qian Ma, Zewei Jiang, Chunxiao Yu, Shihong Yang, and Guangmei Wang
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GREEN manure crops ,SUSTAINABLE agriculture ,FARMS ,SUSTAINABLE development ,ENVIRONMENTAL soil science ,FERTILIZERS - Abstract
Green manures (GM) combined with fertilizer reduction is an efficient measure to alleviate the environmental issues caused by the overapplication of chemical fertilizer. However, both the environmental and economic benefits remain unclear in coastal regions that are affected by both soil salinization and climate change. A field experiment was conducted in low-yield cropland in the Yellow River Delta to explore the effects of green manure rotation combined with fertilizer reduction on the soil environment and economic sustainability. Two GM species, Vicia villosa (HV) and Orychophragmus violaceus (OV), a traditional winter wheat (Wheat), were grown in winter, with a fallow control (Fallow). In the subsequent maize season, three fertilizer rate treatments, a full rate of 600 kg ha-1 compound fertilizer (F100), 85% of the full rate (F85), and 70% of the full rate (F70), were applied in each former treatment. The results indicated that GM return markedly increased soil total N (TN) and P (TP) before the V6 stage of maize (when maize had 6 leaves). The average TN contents of HV and OV increased by 56.9% and 38.5%, respectively, compared with that of Wheat, while the values for TP were 13.6% and 16.9%. Compared with Fallow, the maize yields of HV and OV increased by 25.6% and 13.8%, respectively, while that of Wheat decreased by 9.1%. The average partial fertilizer productivities (PFPs) for HV and OV increased by 25.3% and 14.0% compared with Fallow, while Wheat decreased by 8.9%. The PFPs for F85 and F70 increased by 19.4% and 37.7%, respectively, compared with F100. Reducing the fertilizer rate to 70% in the HV-maize rotation pattern did not reduce but increased the total net profit and rate of return. Thus, HV-maize rotation combined with 30% fertilizer reduction is suggested for sustainable agriculture in this region. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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22. Current status of global rice water use efficiency and water‐saving irrigation technology recommendations
- Author
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Haonan, Qiu, primary, Jie, Wang, additional, Shihong, Yang, additional, Zewei, Jiang, additional, and Yi, Xu, additional
- Published
- 2023
- Full Text
- View/download PDF
23. A Case of VEXAS Syndrome Complicated by Hemophagocytic Lymphohistiocytosis
- Author
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Frederick J. Lee, James Favaloro, Shihong Yang, Stephen Adelstein, Pak Leng Cheong, Edward Abadir, and Alice Grey
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medicine.medical_specialty ,Hemophagocytic lymphohistiocytosis ,business.industry ,Immunology ,MEDLINE ,Immunology and Allergy ,Medicine ,business ,Intensive care medicine ,medicine.disease - Published
- 2021
24. OAB-023: Single-cell analysis reveals disease induced perturbations of CD8+T-cell subsets in the bone marrow and peripheral blood of newly diagnosed multiple myeloma patients
- Author
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James Favaloro, Christian Bryant, Edward Abadir, Shihong Yang, Samuel Gardiner, Najah Nassif, Lisa Sedger, Doug Joshua, and P. Joy Ho
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Cancer Research ,Oncology ,Hematology ,1103 Clinical Sciences, 1112 Oncology and Carcinogenesis - Published
- 2022
25. Variation in rice water requirement and its influencing factors in Poyang Lake basin during the past 30 years *
- Author
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Fangping Liu, Yongzhong Huang, Junzeng Xu, Shihong Yang, and Ju Liang
- Subjects
Hydrology ,Variation (linguistics) ,food ,Lake basin ,Soil Science ,Environmental science ,Rice water ,Agronomy and Crop Science ,food.food - Published
- 2021
26. The long-term effectiveness of biochar in increasing phosphorus availability and reducing its release risk to the environment in water-saving irrigated paddy fields
- Author
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Suting Qi, Shihong Yang, Xiuyan Lin, Jiazhen Hu, Zewei Jiang, and Yi Xu
- Subjects
Soil Science ,Agronomy and Crop Science ,Earth-Surface Processes ,Water Science and Technology - Published
- 2023
27. Development of DNDC-BC model to estimate greenhouse gas emissions from rice paddy fields under combination of biochar and controlled irrigation management
- Author
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Zewei Jiang, Shihong Yang, Pete Smith, Mohamed Abdalla, Qingqing Pang, Yi Xu, Suting Qi, and Jiazhen Hu
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History ,Polymers and Plastics ,Soil Science ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2023
28. Ensemble machine learning for modeling greenhouse gas emissions at different time scales from irrigated paddy fields
- Author
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Zewei Jiang, Shihong Yang, Pete Smith, and Qingqing Pang
- Subjects
Soil Science ,Agronomy and Crop Science - Published
- 2023
29. COVID-19 Outbreak Caused by Contaminated Packaging of Imported Cold-Chain Products — Liaoning Province, China, July 2020
- Author
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Baoying Huang, Li Bai, Shaofeng Jiang, Yecheng Yao, Ning Li, Haibo Sun, Lingling Mao, Wenqing Yao, Yunting Xia, Zhongjie Li, Qian Yang, Shuangli Zhu, Zijian Feng, Mingchun Luan, Yang Song, Dongyan Wang, Yong Zhang, Fengqin Li, Li Zhao, Shihong Yang, Xiang Ren, Tao Ma, Ying Qin, Yanhai Wang, Hong Wang, Zhijian Bo, Zhang J, Jianxing Yu, George F. Gao, Cao Chen, Xiang Zhao, Dayan Wang, Tianjiao Ji, Peihua Niu, Jun Meng, Wenbo Xu, Wenjie Tan, Yan Zhang, Wei Yao, Liang Wang, Zhen Zhu, Huilai Ma, Yingwei Sun, Ji Wang, Jian Cai, and Naiying Mao
- Subjects
Outbreak Reports ,Geography ,Coronavirus disease 2019 (COVID-19) ,outbreak ,Transmission (medicine) ,SARS-CoV-2-contaminated packaging ,Environmental health ,imported cold-chain products ,Outbreak ,COVID-19 ,Cold chain ,General Agricultural and Biological Sciences ,China - Abstract
What is known about this topic? Few major outbreaks of coronavirus disease 2019 (COVID-19) have occurred in China after major non-pharmaceutical interventions and vaccines have been deployed and implemented. However, sporadic outbreaks that had high possibility to be linked to cold chain products were reported in several cities of China.. What is added by this report? In July 2020, a COVID-19 outbreak occurred in Dalian, China. The investigations of this outbreak strongly suggested that the infection source was from COVID-19 virus-contaminated packaging of frozen seafood during inbound unloading personnel contact. What are the implications for public health practice? Virus contaminated paper surfaces could maintain infectivity for at least 17–24 days at -25 ℃. Exposure to COVID-19 virus-contaminated surfaces is a potential route for introducing the virus to a susceptible population. Countries with no domestic transmission of COVID-19 should consider introducing prevention strategies for both inbound travellers and imported goods. Several measures to prevent the introduction of the virus via cold-chain goods can be implemented.
- Published
- 2021
30. Evolving deep convolutional neural networks by IP-based marine predator algorithm for COVID-19 diagnosis using chest CT scans
- Author
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Bing Liu, Xuan Nie, Zhongxian Li, Shihong Yang, and Yushu Tian
- Subjects
General Computer Science - Abstract
This paper proposes an optimal structured deep convolutional neural network (DCNN) based on the marine predator algorithm (MPA) to construct a novel automatic diagnosis platform that may help radiologists identify COVID-19 and non-COVID-19 patients based on CT scan categorization and analysis. The goal is met with the help of three modifications based on the regular MPA. First, a novel encoding scheme based on Internet Protocol (IP) addresses is proposed, followed by introducing an Enfeebled layer to build a variable-length DCNN. Finally, the learning process divides big datasets into smaller chunks that are randomly evaluated. The proposed model is compared to the COVID-CT and SARS-CoV-2 datasets to undertake a complete evaluation. Following that, the performance of the developed model (DCNN-IPMPA) is compared to that of a typical DCNN and seven variable-length models using five well-known comparison metrics, as well as the receiver operating characteristic and precision-recall curves. The results show that the DCNN-IPMPA outperforms other benchmarks, with a final accuracy of 97.21% on the SARS-CoV-2 dataset and 97.94% on the COVID-CT dataset. Also, timing analysis indicates that the DCNN processing time is the best among all benchmarks as expected; however, DCNN-IPMPA represents a competitive result compared to the standard DCNN.
- Published
- 2022
31. Temporal Upscaling of Rice Evapotranspiration Based on Canopy Resistance in a Water-Saving Irrigated Rice Field
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Shihong Yang, Junzeng Xu, Yang Zhuang, Xiaoyin Liu, and Yuping Lv
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Canopy ,Atmospheric Science ,010504 meteorology & atmospheric sciences ,Resistance (ecology) ,0208 environmental biotechnology ,02 engineering and technology ,01 natural sciences ,020801 environmental engineering ,Agronomy ,Evapotranspiration ,Environmental science ,Paddy field ,Water saving ,0105 earth and related environmental sciences - Abstract
An important element of the hydrologic cycle, the hydrometeorological parameter of evapotranspiration (ET), is critical in the development of effective water resources planning and irrigation scheduling. The ET varies in response to changes in resistance at the canopy surface rc and soil moisture content θ, especially under water-saving irrigation (WSI) practices. Drawing on data collected by eddy covariance in WSI rice paddies in eastern China in 2015 and 2016, variations in ET were studied by calculating and analyzing hourly canopy resistance and daily canopy resistance . Discrepancies were noted between true daily ET with respect to the estimated daily ET at different periods [0700–1600 local time (UTC + 8)]. To estimate in the WSI rice fields, the mean value between 0900 and 1000 LT, and between 1000 and 1100 LT performed considerably better than for a single time. Seasonal estimated ET can be accurately calculated by interpolating at different time intervals, thereby achieving a greater correlation and consistency at 2-day intervals. Then a generalized two-segment line of variation was used to calculate , achieving good results and showing that in the absence of observational data, could be easily calculated through a simplified pattern of variability. In conclusion, an ET temporal upscaling method for a WSI paddy, based on variation in and values, was optimized and is recommended for local application. Future work will focus on temporal upscaling of ET by extrapolating remote sensing instantaneous estimates to daily values.
- Published
- 2020
32. Storing and removing nitrogen in drainage from paddy field by using aquatic crops wetland
- Author
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Jintao Liu, Qi Wei, Yihao Peng, Shihong Yang, Junzeng Xu, and Linxian Liao
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geography ,Environmental Engineering ,geography.geographical_feature_category ,business.industry ,Water storage ,chemistry.chemical_element ,Wetland ,04 agricultural and veterinary sciences ,010501 environmental sciences ,01 natural sciences ,Nitrogen ,Crop ,Nutrient ,Agronomy ,chemistry ,Agriculture ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Paddy field ,Environmental science ,Drainage ,business ,Agronomy and Crop Science ,0105 earth and related environmental sciences ,Water Science and Technology - Abstract
Aquatic crop (Zizania latifolia Stapf–Ipomoea aquatica Forsk) wetlands were constructed to remove nitrogen (N) in drainage from paddy rice fields, with three different storage water depths (namely 4H, 7H and 10H, where H is the routine paddy drainage water depth). Concentrations of ammonium nitrogen (NH4+-N), nitrate nitrogen (NO3−-N) and total nitrogen (TN) during the first two drainage events were reduced within 8–14d of storing by 82.3–92.8%, 84.5–94.3% and 74.9–92.4%, respectively. Generally, the higher N concentration in inlet water, the higher removal efficiency of nitrogen. The removal rate in wetland with 4H water storage was observed higher as compared to those at 7H and 10H. Overall, the aquatic crop wetlands at these storage water depths could intercept more than 93.2% of N output from paddy fields, and the removal efficiency was slightly better in wetland at 4H. For a routine drainage event (about 30–50 mm) occurred following a routine rainfall (about 100 mm at 5–10 years return period) with local water-level management practice in rice field, wetlands with 4H and 7H storage could effectively remove N in drainage by reusing it with aquatic crops. Nevertheless, the larger the proportion (low water depth in wetland for one drainage) of wetland to paddy field, the higher the production efficiency, because the value of aquatic vegetable is much higher than rice. The current results suggested that aquatic crop wetlands constructed in low-lying part within paddy fields could intercept a large amount of N output from paddy field, and with high economic return. Designing wetlands and paddy fields in a proper area ratio is vital important for balancing removal effect of nutrients in paddy drainage and the demand of food security.
- Published
- 2020
33. Precipitation synthesis and enhanced electrochemical performance of graphene-modified LiMn2O4 for lithium-ion batteries
- Author
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Zhongcai Shao, Axiang Li, Xuetian Li, Aili Zhang, and Shihong Yang
- Subjects
Materials science ,Scanning electron microscope ,General Chemical Engineering ,General Physics and Astronomy ,chemistry.chemical_element ,02 engineering and technology ,engineering.material ,010402 general chemistry ,Electrochemistry ,01 natural sciences ,Ion ,law.invention ,Coating ,law ,General Materials Science ,Precipitation (chemistry) ,Graphene ,General Engineering ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Dielectric spectroscopy ,Chemical engineering ,chemistry ,engineering ,Lithium ,0210 nano-technology - Abstract
The graphene-modified LiMn2O4 cathode material was synthesized by precipitation method. X-ray diffraction (XRD), scanning electron microscopy (SEM), and fourier transform infrared (FITR) showed LiMn2O4 had been successfully combined with the graphene. The charge and discharge tests and electrochemical impedance spectroscopy (EIS) were used to study electrochemical properties of as-synthesized material. The results showed that the electrochemical properties of the graphene oxide–supported LiMn2O4 were superior to that of the LiMn2O4 material. The initial discharge capacity of the graphene-modified LiMn2O4 material reached 127 mAh g−1. After 100 cycles, it still had a capacity retention rate of 96.2%. Enhanced electrochemical performance of graphene-supported LiMn2O4 could be attributed to the establishment of fast Li+ channels and structural stability after coating LiMn2O4 with the graphene.
- Published
- 2020
34. Impact of Biochar Application on Ammonia Volatilization from Paddy Fields under Controlled Irrigation
- Author
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Suting Qi, Jie Ding, Shihong Yang, Zewei Jiang, and Yi Xu
- Subjects
NH3 volatilization ,paddy fields ,Environmental effects of industries and plants ,Renewable Energy, Sustainability and the Environment ,Geography, Planning and Development ,TJ807-830 ,Management, Monitoring, Policy and Law ,TD194-195 ,controlled irrigation ,Renewable energy sources ,Environmental sciences ,biochar ,ammonia-oxidizing microorganism ,GE1-350 - Abstract
Ammonia volatilization is an important nitrogen loss pathway in the paddy field ecosystem which leads to low nitrogen-utilization efficiency and severe atmospheric pollution. To reveal the influence and the mechanism of biochar application on ammonia volatilization from paddy fields under controlled irrigation, field experiments were conducted in the Taihu Lake Basin in China. The experiment consisted of three levels of biochar application (0, 20, and 40 t·ha−1) and two types of irrigation management (controlled irrigation and flood irrigation). Increasing ammonia volatilization occurred after fertilization. Biochar application reduced the cumulative ammonia volatilization from controlled-irrigation paddy fields, compared with non-biochar treatment. The cumulative ammonia volatilization in controlled-irrigation paddy fields with 40 t·ha−1 biochar application was reduced by 12.27%. The decrease in ammonia volatilization was related to the change in soil physical and soil physical–chemical properties and soil microbial activities. The high biochar application (40 t·ha−1) increased the NH4+-N content in soil (p < 0.01) and soil solution (p p < 0.01), and high biochar application (40 t·ha−1) increased soil urease activity by 33.70%. Ammonia volatilization from paddy fields was significantly correlated with the nitrogen concentration (p < 0.01) in the soil solution and soil urease activity (p < 0.05). Meanwhile, the abundance of ammonia monooxygenase subunit A (AOA) and ammonia-oxidizing bacteria (AOB) with biochar application under controlled irrigation showed an increasing trend with rice growth. The long-term application of biochar may have a relatively strong potential to inhibit ammonia volatilization. In general, the combined application of controlled irrigation and biochar provides an eco-friendly strategy for reducing farmland N loss and improving paddy field productivity.
- Published
- 2022
- Full Text
- View/download PDF
35. Halotolerant Bacteria are Key Antibiotic Resistant Players in Saline Soils Revealed by Metagenomic Analysis: Exploration of the Underlying Co-Selection Mechanisms
- Author
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Yi Xu, Guoxiang You, Jinbao Yin, Mairan Zhang, Dengyun Peng, Junzeng Xu, Shihong Yang, and Jun Hou
- Subjects
History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
36. Salt tolerance evolution facilitates antibiotic resistome in soil microbiota: Evidences from dissemination evaluation, hosts identification and co-occurrence exploration
- Author
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Yi, Xu, Guoxiang, You, Jinbao, Yin, Mairan, Zhang, Dengyun, Peng, Junzeng, Xu, Shihong, Yang, and Jun, Hou
- Subjects
Health, Toxicology and Mutagenesis ,General Medicine ,Toxicology ,Pollution - Abstract
Salinity is considered as one of the vital factors affecting the profiles of antibiotic resistance genes (ARGs) in soils, whereby its roles in shaping the antibiotic resistome were still poorly understood. Here, metagenomic analysis was conducted to track the ARGs distributions and dissemination in soils during salt accumulation and desalinization processes. Neutral-salt accumulation for 45 and 90 days significantly increased the relative abundances of ARGs and mobile genetic elements (MGEs) carrying antibiotic resistance contigs (ARCs). The ARGs within antibiotic efflux and target protection families primarily carried by Streptomyces, Nocardioides, Rhodanobacter and Monashia were largely enriched by salinity. The ARGs subtypes of the resistance-nodulation-division (RND) family, ATP-binding cassette (ABC) family, rRNA methyltransferase and other efflux were closely associated with MGEs, contributing to the enrichment of ARGs. Moreover, the ARGs subtypes and transposons were genetically linked with the salt-tolerance mechanisms of organic osmolyte transporters and K
- Published
- 2023
37. Preparation and electrochemical properties of LiFePO4/C-Li4Ti5O12 composites
- Author
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Zhongcai Shao, Xuetian Li, Zhijiang Liu, and Shihong Yang
- Subjects
Materials science ,General Chemical Engineering ,Composite number ,General Engineering ,General Physics and Astronomy ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Electrochemistry ,01 natural sciences ,0104 chemical sciences ,law.invention ,Crystal ,Magazine ,law ,Impurity ,Phase (matter) ,General Materials Science ,Calcination ,Composite material ,0210 nano-technology ,Science, technology and society - Abstract
LiFePO4/C-Li4Ti5O12 composite electrode materials were synthesized by blending LiFePO4/C and Li4Ti5O12 materials then calcining at 500 °C for 14 h. The effects of different composite ratios on the phase structure and electrochemical properties of LiFePO4/C-Li4Ti5O12 composite cathode materials were investigated. The results showed that the structure of LiFePO4/C and Li4Ti5O12 in the composite prepared by the simple blending method did not change. XRD shows only the characteristic peaks of these two substances and no characteristic peaks of other crystal impurities. When the recombination ratio was 8:2 (LPF-8), the obtained composite material had fine particles and uniform size. The initial discharge capacity at 0.1C rate is 151.56 mAh g−1 at the voltage of 1.0–4.2 V. After 100 cycles, the capacity retention rate was 97.3% which exhibited more outstanding electrochemical performance than samples with other composite ratios.
- Published
- 2019
38. Modeling CH4 and N2O emissions for continuous and noncontinuous flooding rice systems
- Author
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Hao Liang, Junzeng Xu, Huijing Hou, Zhiming Qi, Shihong Yang, Yawei Li, and Kelin Hu
- Subjects
Animal Science and Zoology ,Agronomy and Crop Science - Published
- 2022
39. Optimal Operation Model of Drainage Works for Minimizing Waterlogging Loss in Paddy Fields
- Author
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Juzeng Xu, Fangping Liu, Zewei Jiang, Shihong Yang, Liu Zhenyang, and Yujiang Xiong
- Subjects
Irrigation ,Water supply for domestic and industrial purposes ,Flood myth ,Geography, Planning and Development ,optimal operation ,modeling ,Hydraulic engineering ,Agricultural engineering ,Aquatic Science ,Biochemistry ,Irrigation district ,waterlogging ,Environmental science ,Operation time ,paddy field drainage ,Drainage ,TC1-978 ,Operation model ,TD201-500 ,Global optimization ,Water Science and Technology ,Waterlogging (agriculture) - Abstract
The risk of flood or waterlogging in irrigation districts has increased due to global climate change and intensive human activities. A Model of Optimal Operation of Drainage Works (MOODW) for flat irrigation district was established by incorporating the hydrological model of waterlogging process and waterlogging loss estimation, which was solved by an optimization method of genetic algorithm. The model of waterlogging process was built based on a modified Tank model and hydrodynamic model for the ditch-river system. The waterlogging loss is calculated under the condition of inconstant inundated depth by linear interpolation. The adaptive genetic algorithm with the global optimization function was selected to solve the model. With an extreme rainfall events in Gaoyou irrigation district as cases, results showed that operation time and numbers of pumps increased, thus, operating costs were 1.4 times higher than before, but the yield loss of rice decreased by 35.4% observably. Finally, the total waterlogging loss was reduced by 33.8% compared with the traditional operation of waterlogging work. The most significant improvement was found in units with high waterlogging vulnerability. The MOODW can provide the waterlogging information visually and assist the district manager in making a reasonable decision.
- Published
- 2021
- Full Text
- View/download PDF
40. Can ensemble machine learning be used to predict the groundwater level dynamics of farmland under future climate: a 10-year study on Huaibei Plain
- Author
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Zewei Jiang, Shihong Yang, Zhenyang Liu, Yi Xu, Tao Shen, Suting Qi, Qingqing Pang, Junzeng Xu, Fangping Liu, and Tao Xu
- Subjects
Machine Learning ,Farms ,Health, Toxicology and Mutagenesis ,Climate Change ,Environmental Chemistry ,Bayes Theorem ,General Medicine ,Pollution ,Groundwater - Abstract
Accurate and simple prediction of farmland groundwater level (GWL) is an important aspect of agricultural water management. A farmland GWL prediction model, GWPRE, was developed that integrates four machine learning (ML) models (support vector machine regression, random forest, multiple perceptions, and the stacking ensemble model) with weather forecasts. Based on the GWL and meteorological data of five monitoring wells (N1, N2, N3, N4, and N5) in Huaibei plain from 2010 to 2020, the feasibility of predicting GWL by meteorological factors and ML algorithm was tested. In addition, the stacking ensemble model and future meteorological data after Bayesian model averaging were introduced for the first time to predict GWL under future climate conditions. The results showed that GWL showed an increasing trend in the past decade, but it will decrease in the future. The performance of the stacking ensemble model was better than that of any single ML model, with RMSE reduced by 4.26 ~ 96.97% and the running time reduced by 49.25 ~ 99.40%. GWL was most sensitive to rainfall, and the sensitivity index ranged from 0.2547 to 0.4039. The fluctuation range of GWL of N1, N2, and N3 was 1.5 ~ 2.5 m in the next decade. Due to the possible high rainfall, the GWL decreased in 2024 under RCP 2.6 and 2026 under RCP 8.5. It is worth noting that although the stacking ensemble model can improve the accuracy, it is not always the best among ML models in terms of portability. Nevertheless, the stacking ensemble model was recommended for GWL prediction under climate change.
- Published
- 2021
41. Antibiotic resistance genes alternation in soils modified with neutral and alkaline salts: interplay of salinity stress and response strategies of microbes
- Author
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Yi Xu, Guoxiang You, Mairan Zhang, Dengyun Peng, Zewei Jiang, Suting Qi, Shihong Yang, and Jun Hou
- Subjects
Soil ,Environmental Engineering ,Genes, Bacterial ,Environmental Chemistry ,Drug Resistance, Microbial ,Salts ,Pollution ,Waste Management and Disposal ,Salt Stress ,Soil Microbiology ,Anti-Bacterial Agents - Abstract
Growing evidence points to the pivotal roles of salt accumulation in mediating antibiotic resistance genes (ARGs) spread in soil, whereas how salt mediates ARGs dissemination remains unknown. Herein, the effects of neutral or alkaline (Ne/Al) salt at low, moderate and high levels (Ne/Al-L, Ne/Al-M, Ne/Al-H) on the dissemination of ten typical ARGs in soils were explored, by simultaneously considering the roles of salinity stress and response strategies of microbes. In the soils amended with Ne/Al-L and Al-M salt, the dissemination of ARGs was negligible and the relative abundances of ARGs and mobile genetic elements (MGEs) were decreased. However, Ne-M and Al-H salt contributed to the dissemination of ARGs in soils, with the significantly increased absolute and relative abundances of ARGs and MGEs. In Ne-H soil, although the absolute abundance of ARGs declined drastically due to serious oxidative damage, their relative abundances were promoted. The facilitated ARGs transfer was potentially related to the excessive generation of intracellular reactive oxygen species and increased activities of DNA repair enzymes involved in SOS system. In addition, the activated intracellular protective response including quorum sensing and energy metabolism largely provided essential factors for ARGs dissemination. The co-occurrence of ARGs and over-expressed salt-tolerant genes in specific halotolerant bacteria further suggested the selection of salt stress on ARGs. Moreover, less disturbance of alkaline salt than neutral salt on ARGs evolution was observed, due to the lower abiotic stress and selective pressure on microbes. This study highlights that soil salinity-sodicity could dose-dependently reshape the dissemination of ARGs and community structure of microbes, which may increase the ecological risks of ARGs in agricultural environment.
- Published
- 2021
42. Coupling machine learning and weather forecast to predict farmland flood disaster: A case study in Yangtze River basin
- Author
-
Zewei Jiang, Shihong Yang, Zhenyang Liu, Yi Xu, Yujiang Xiong, Suting Qi, Qingqing Pang, Junzeng Xu, Fangping Liu, and Tao Xu
- Subjects
Environmental Engineering ,Ecological Modeling ,Software - Published
- 2022
43. Biochar improved rice yield and mitigated CH4 and N2O emissions from paddy field under controlled irrigation in the Taihu Lake Region of China
- Author
-
Jie Ding, Shihong Yang, Zewei Jiang, Junzeng Xu, Yanan Xiao, and Xiao Sun
- Subjects
Atmospheric Science ,Irrigation ,010504 meteorology & atmospheric sciences ,Amendment ,Soil carbon ,010501 environmental sciences ,01 natural sciences ,Agronomy ,Greenhouse gas ,Dissolved organic carbon ,Biochar ,Paddy field ,Environmental science ,Soil fertility ,0105 earth and related environmental sciences ,General Environmental Science - Abstract
Biochar application is proposed having a potential of inhibiting greenhouse gases emissions from paddy fields, which is considered to be a main source of atmospheric greenhouse gases. However, the impacts of biochar on greenhouse gases from paddy field have not been investigated under controlled irrigation (CI). Field experiments were conducted during 2016–2017 to determine the effect of biochar application combined with controlled irrigation on rice yield and methane (CH4) and nitrous oxide (N2O) emission from paddy fields in the Taihu Lake Region of China. Four treatments (0 t ha−1 biochar +CI, 20 t ha−1 biochar +CI, 40 t ha−1 biochar +CI, and 40 t ha−1 biochar + flooding irrigation (FI), named CA, CB, CC and FC, respectively) were designed in this study. The results showed that the effect of biochar application on greenhouse gases emissions from paddy fields under controlled irrigation had significant interannual differences. In the first season, CC decreased the global warming potential(GWP) of CH4 and N2O emission, and the CB increased the GWP of CH4 and N2O emission compared to CA, but these differences were not significant. For the second season, CB and CC decreased the GWP of CH4 and N2O emission by 35.7% and 21.5% significantly compared to CA due to the significant mitigation of CH4 and N2O emission. Biochar application significantly increased CH4 emission and decreased N2O emission from paddy fields under flooding irrigation compared to controlled irrigation (CC), which led to the FC's GWP was 1.70 and 5.47 times higher than CC's in the first and second season. In addition, biochar application increased soil organic carbon, dissolved organic carbon and total nitrogen contents of paddy fields under controlled irrigation. And CB and CC increased rice yield by 16.7% and 24.3% and irrigation water productivity by 26.1% and 30.8% compared with CA (mean of two seasons). These results suggest that 20 and 40 t ha−1 biochar can be utilized under controlled irrigation not only for mitigation of CH4 and N2O emission but also to increase rice yield, soil fertility and irrigation water productivity. Therefore, the combination of biochar amendment and controlled irrigation might be a good option for mitigating greenhouse gases emission and realizing the sustainable utilization of soil and water resources of paddy fields in the Taihu Lake Region of China.
- Published
- 2019
44. Modeling rice development and field water balance using AquaCrop model under drying-wetting cycle condition in eastern China
- Author
-
Shihong Yang, Yawei Li, Haiyu Wang, Junzeng Xu, Zheng Wei, and Bai Wenhuan
- Subjects
Canopy ,Irrigation ,0208 environmental biotechnology ,Soil Science ,Biomass ,Soil science ,04 agricultural and veterinary sciences ,02 engineering and technology ,020801 environmental engineering ,Crop ,Water balance ,Yield (wine) ,Evapotranspiration ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Agronomy and Crop Science ,Water content ,Earth-Surface Processes ,Water Science and Technology - Abstract
Various crop growth models have been developed to simulate the crop development and were used to assess the effects of climate, cultivation and irrigation methods. To evaluate the feasibility of water driven model-AquaCrop in simulating crop development, production and field water balance in paddy soil under drying – wetting cycle condition, the model was calibrated and validated based on data during 2012–2013 rice season in Eastern China. Results showed that the accuracy of this model in simulating canopy cover (CC), evapotranspiration (ET), biomass, yield were generally acceptable, with the root mean square of error (RMSE) less than 10% for CC, 1.0 mm for ET, 0.61t ha−1 for biomass and with relative deviation of 3.6% for yield. Meanwhile, AquaCrop tended to overestimate CC, biomass and yield slightly during the midseason. Yet, its performance in simulating soil moisture content was not as good as expected. It tended to underestimate soil moisture with a RMSE of 14.81%, but overestimated the water deficit coefficient (Ks). The method for Ks calculation incorporated in AquaCrop should be revised for rice under drying-wetting cycle condition.
- Published
- 2019
45. Treg and Oligoclonal Expansion of Terminal Effector CD8+ T Cell as Key Players in Multiple Myeloma
- Author
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John Gibson, Christian E Bryant, Slavica Vuckovic, Ka Hei Aleks Lau, Shihong Yang, Phoebe Joy Ho, James Favaloro, and Douglas E. Joshua
- Subjects
lcsh:Immunologic diseases. Allergy ,CD69+TTE ,Carcinogenesis ,Mini Review ,Immunology ,T cells ,Context (language use) ,Biology ,CD8-Positive T-Lymphocytes ,Lymphocyte Activation ,Monoclonal Gammopathy of Undetermined Significance ,T-Lymphocytes, Regulatory ,Immune system ,immune system diseases ,hemic and lymphatic diseases ,medicine ,1107 Immunology, 1108 Medical Microbiology ,Tumor Microenvironment ,Immunology and Allergy ,Cytotoxic T cell ,Animals ,Humans ,Multiple myeloma ,Cell Proliferation ,Effector ,medicine.disease ,CD39-Treg ,body regions ,medicine.anatomical_structure ,myeloma ,Cancer research ,Bone marrow ,Clone (B-cell biology) ,Multiple Myeloma ,lcsh:RC581-607 ,Precancerous Conditions ,CD8 ,oligoclonal expansions - Abstract
The classical paradigm of host-tumor interaction, i.e. elimination, equilibrium, and escape (EEE), is reflected in the clinical behavior of myeloma which progresses from the premalignant condition, Monoclonal Gammopathy of Unknown Significance (MGUS). Despite the role of other immune cells, CD4+ regulatory T cells (Treg) and cytotoxic CD8+ T cells have emerged as the dominant effectors of host control of the myeloma clone. Progression from MGUS to myeloma is associated with alterations in Tregs and terminal effector CD8+ T cells (TTE). These changes involve CD39 and CD69 expression, affecting the adenosine pathway and residency in the bone marrow (BM) microenvironment, together with oligoclonal expansion within CD8+ TTE cells. In this mini-review article, in the context of earlier data, we summarize our recent understanding of Treg involvement in the adenosine pathway, the significance of oligoclonal expansion within CD8+ TTE cells and BM-residency of CD8+ TTE cells in MGUS and newly diagnosed multiple myeloma patients.
- Published
- 2021
46. Attenuation effects of iron on dissemination of antibiotic resistance genes in anaerobic bioreactor: Evolution of quorum sensing, quorum quenching and dynamics of community composition
- Author
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Guoxiang You, Shihong Yang, Jun Hou, and Yi Xu
- Subjects
Environmental Engineering ,Health, Toxicology and Mutagenesis ,Iron ,0211 other engineering and technologies ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Microbiology ,Antibiotic resistance ,Bioreactors ,Bioreactor ,Environmental Chemistry ,Anaerobiosis ,Waste Management and Disposal ,0105 earth and related environmental sciences ,021110 strategic, defence & security studies ,Zerovalent iron ,biology ,Sewage ,Chemistry ,Quorum Sensing ,Drug Resistance, Microbial ,biology.organism_classification ,Pollution ,Resistome ,Anti-Bacterial Agents ,Quorum sensing ,Quorum Quenching ,Genes, Bacterial ,Anaerobic exercise ,Bacteria - Abstract
Zero valent iron (ZVI) coupled with bioreactors is arising as a promising technology for antibiotic resistance genes (ARGs) mitigation, whereas the succession and behaviors of microbes caused by ZVI in relieving ARGs propagation remain unclear. Herein, the effects of ZVI on microbial quorum sensing (QS), quorum quenching (QQ) system and community dynamics were examined in anaerobic bioreactor fed with oxytetracycline (tet), to illustrate the roles of evolutive microbial communication and community composition in ARGs attenuation. With the addition of 5 g/L ZVI, the total absolute abundance of tet ARGs was retarded by approximate 95% and 72% in sludge and effluent after 25 days operation. The abundance of mobile genetic elements and the heredity of antibiotic resistant bacteria revealed the declined horizontal and vertical transfer of ARGs, which directly led to the reduced ARGs propagation. Potential mechanisms are that the positive effects of ZVI on QQ activity via the functional bacteria enrichment inhibited QS system and thus ARGs transfer. Partial least--squares path modeling further demonstrated that ARGs abundance was strongly limited by the dynamics of bacterial composition and thereby less frequent microbial communication. These results provide new insights into the mechanisms of antibiotic resistome remission in anaerobic bioreactor modified by ZVI.
- Published
- 2020
47. Antibiotic resistance genes attenuation in anaerobic microorganisms during iron uptake from zero valent iron: An iron-dependent form of homeostasis and roles as regulators
- Author
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Yi Xu, Guoxiang You, Shihong Yang, and Jun Hou
- Subjects
Environmental Engineering ,Iron ,0208 environmental biotechnology ,02 engineering and technology ,010501 environmental sciences ,Dechloromonas ,medicine.disease_cause ,01 natural sciences ,Microbiology ,Bioreactor ,medicine ,Homeostasis ,Anaerobiosis ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Water Science and Technology ,Civil and Structural Engineering ,Zerovalent iron ,biology ,Chemistry ,Ecological Modeling ,Drug Resistance, Microbial ,biology.organism_classification ,Pollution ,020801 environmental engineering ,Anti-Bacterial Agents ,Regulon ,Cloacibacterium ,Efflux ,Oxidative stress ,Intracellular - Abstract
Zero valent iron (ZVI) has been previously documented to attenuate the propagation of antibiotic resistance genes (ARGs) in microbes, while how ZVI affects the evolution of ARGs remains unclear. Herein, we investigated the influences of ZVI on ARGs dissemination in anaerobic bioreactor treating oxytetracycline (tet) containing wastewater, by deciphering the roles of iron homeostasis and regulatory effects. A net reduction of tet gene targets ranging from 0.75 to 1.88 and 0.67 to 2.08 log unit in intracellular and extracellular DNA was achieved at the optimal dosage of 5 g/L ZVI, whereas 20 g/L ZVI made no effects on ARGs reduction. The reduced ARGs abundance by ZVI was directly related to the inhibited horizontal transfer of ARGs and decreased proliferation of resistant strains (mainly Paludibacter and WCHB1–32). The potential mechanisms included the increased antioxidant capacity, the depressed efflux pump system and the weakened energy driving force by Fur regulon in microbes (especially for Cloacibacterium and Dechloromonas). The negligible influence of 20 g/L ZVI on ARGs reduction was ascribed to the iron-catalyzed oxidative damage and reduced physiological activity. This study firstly illustrated the potential relationships among activation of iron uptake regulator leading to protection against oxidative stress, alternation of physiological metabolisms and reduction of ARGs dissemination. This work extents our understanding about the priority of ZVI in mitigating ARGs proliferation and sheds light on its potential application in wastewater treatment plants.
- Published
- 2020
48. Effects of Biochar Application on Soil Organic Carbon Composition and Enzyme Activity in Paddy Soil under Water-Saving Irrigation
- Author
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Xi Chen, Jie Ding, Shihong Yang, Zewei Jiang, Junzeng Xu, and Xiao Sun
- Subjects
Irrigation ,China ,Agricultural Irrigation ,Health, Toxicology and Mutagenesis ,lcsh:Medicine ,010501 environmental sciences ,01 natural sciences ,Article ,Soil ,Biochar ,Biomass ,0105 earth and related environmental sciences ,Total organic carbon ,water-saving irrigation ,paddy fields ,Soil organic matter ,lcsh:R ,Public Health, Environmental and Occupational Health ,Water ,straw biochar ,Oryza ,04 agricultural and veterinary sciences ,Soil carbon ,Straw ,soil organic carbon ,Agronomy ,soil enzyme activity ,Charcoal ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Paddy field ,Environmental science ,Composition (visual arts) - Abstract
Rice water-saving irrigation technology can remarkably reduce irrigation water input and maintain high yield, however, this technology can also accelerate the decomposition of soil organic matter in paddy fields. The spatial and temporal distributions of soil organic carbon (SOC), water-soluble organic carbon (WSOC), and soil microbial biomass carbon (SMBC) under different water-carbon regulation scenarios were analyzed on the basis of field experiments in the Taihu Lake region in China to explore the effects of biochar application on SOC and its components in water-saving irrigation paddy fields. The response of soil catalase (CAT) and invertase (INV) to biochar application in water-saving irrigated rice fields was clarified. The results showed that water-saving irrigation reduced the SOC content by 5.7% to 13.3% but increased WSOC and SMBC contents by 13.8% to 26.1% and 0.9% to 11.1%, respectively, as compared with flooding irrigation. Nonflooding management promoted the oxidative decomposition of soil organic matter. Two years after straw biochar was added, paddy soil SOC content under water-saving irrigation was increased by 4.0% to 26.7%. The WSOC and SMBC contents were also increased by 4.0% to 52.4% and 7.0% to 40.8%, respectively. The high straw biochar addition rate exhibited great impact on SOC. Remarkable correlations among SOC, WSOC, and SMBC were observed, indicating that the addition of straw biochar improved soil labile C, such as WSOC and SMBC, which promoted SOC transformation and stability in paddy soil under water-saving irrigation. Soil CAT and INV were related to SOC conversion. In conclusion, the combination of water-saving irrigation and straw biochar addition was beneficial to the improvement of soil properties and fertility of paddy fields.
- Published
- 2020
49. Soil degassing during watering: An overlooked soil N2O emission process
- Author
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Qi Wei, Weiguang Wang, Zhiming Qi, Junzeng Xu, Linxian Liao, and Shihong Yang
- Subjects
Irrigation ,010504 meteorology & atmospheric sciences ,Health, Toxicology and Mutagenesis ,Characterisation of pore space in soil ,Soil science ,04 agricultural and veterinary sciences ,General Medicine ,Nitrous oxide ,N2o flux ,Toxicology ,01 natural sciences ,Pollution ,chemistry.chemical_compound ,chemistry ,Scientific method ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Groundwater ,0105 earth and related environmental sciences - Abstract
Pulse diffusive nitrous oxide (N2O) emission following water application is well documented, whereas N2O emission caused by soil water-air displacement during the watering process (termed as soil degassing) has been largely overlooked. Watering-induced N2O emissions from ten different soils in China were quantified, and found to range from 74.4 ± 6.7 to 678.1 ± 36.6 μg N2O m−2 h−1 in surface watered (SW) soils, and from 45.6 ± 4.4 to 358.1 ± 23.6 μg N2O m−2 h−1 in subsurface watered (SUW) soils. These N2O fluxes were much larger than the diffusive N2O flux from the same soil either under dry (7.9%–9.6% water filled pore space, WFPS) or wet (85.1%–93.6% WFPS) conditions. The watering process (the water infiltration process upon irrigation/rainfall or the process of shallow groundwater uplifting) resulted in massive N2O emissions.
- Published
- 2018
50. Vapor Condensation in Rice Fields and Its Contribution to Crop Evapotranspiration in the Subtropical Monsoon Climate of China
- Author
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Junzeng Xu, Shihong Yang, Yijiang Wang, Xiaoyin Liu, and Jiangang Zhang
- Subjects
Atmospheric Science ,Irrigation ,010504 meteorology & atmospheric sciences ,0208 environmental biotechnology ,Irrigation scheduling ,02 engineering and technology ,Subtropics ,Atmospheric sciences ,Monsoon ,01 natural sciences ,Arid ,020801 environmental engineering ,Water balance ,Evapotranspiration ,Environmental science ,Paddy field ,0105 earth and related environmental sciences - Abstract
While vapor condensation in arid and semiarid areas has garnered much attention, such information is scarce for humid crop production areas such as rice fields. In a water-saving irrigation (WSI) rice field, high-precision weighed microlysimeters allowed the direct and independent quantification of condensation over plants (Cc) and soil (Cs) through mass balance calculations. The occurrence frequency and rate of Cc generally exceeded that of Cs. Predominantly occurring between sunset and sunrise, particularly between 0400 and 0500 local time, Cc showed an overall maximum rate of 0.096 mm h−1. In contrast, Cs was highest between 0100 and 1100 local time and showed an overall maximum rate of 0.044 mm h−1. The occurrence of Cc, unlike that of Cs, required a surface temperature lower than the ambient temperature or dewpoint. Of 65 rain-free days, Cc and Cs occurred on 60 and 33 days, respectively. Seasonal Cc, Cs, and Cc + Cs were estimated as 32.3, 3.1, and 35.4 mm, respectively, and their contributions to seasonal rice transpiration T, evaporation E, and evapotranspiration (ET) were 9.5%, 1.6%, and 6.7%, respectively. The seasonal Cc + Cs was similar in magnitude to a routine irrigation quota and accounted for 10.8% of rainfall and 14.4% of irrigation in the WSI rice field. Therefore, vapor condensation in rice fields in a subtropical monsoon climate is an important component of the hydrological cycle and cannot be ignored when tabulating the field water balance, calculating field water consumption, or in irrigation scheduling.
- Published
- 2018
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