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Recently, research on Text-Attributed Graphs (TAGs) has gained significant attention due to the prevalence of free-text node features in real-world applications and the advancements in Large Language Models (LLMs) that bolster TAG methodologies. However, current TAG approaches face two primary challenges: (i) Heavy reliance on label information and (ii) Limited cross-domain zero/few-shot transferability. These issues constrain the scaling of both data and model size, owing to high labor costs and scaling laws, complicating the development of graph foundation models with strong transferability. In this work, we propose the GraphCLIP framework to address these challenges by learning graph foundation models with strong cross-domain zero/few-shot transferability through a self-supervised contrastive graph-summary pretraining method. Specifically, we generate and curate large-scale graph-summary pair data with the assistance of LLMs, and introduce a novel graph-summary pretraining method, combined with invariant learning, to enhance graph foundation models with strong cross-domain zero-shot transferability. For few-shot learning, we propose a novel graph prompt tuning technique aligned with our pretraining objective to mitigate catastrophic forgetting and minimize learning costs. Extensive experiments show the superiority of GraphCLIP in both zero-shot and few-shot settings, while evaluations across various downstream tasks confirm the versatility of GraphCLIP. Our code is available at: https://github.com/ZhuYun97/GraphCLIP, Comment: Under Review

Recently, Retrieval-Augmented Generation (RAG) has achieved remarkable success in addressing the challenges of Large Language Models (LLMs) without necessitating retraining. By referencing an external knowledge base, RAG refines LLM outputs, effectively mitigating issues such as ``hallucination'', lack of domain-specific knowledge, and outdated information. However, the complex structure of relationships among different entities in databases presents challenges for RAG systems. In response, GraphRAG leverages structural information across entities to enable more precise and comprehensive retrieval, capturing relational knowledge and facilitating more accurate, context-aware responses. Given the novelty and potential of GraphRAG, a systematic review of current technologies is imperative. This paper provides the first comprehensive overview of GraphRAG methodologies. We formalize the GraphRAG workflow, encompassing Graph-Based Indexing, Graph-Guided Retrieval, and Graph-Enhanced Generation. We then outline the core technologies and training methods at each stage. Additionally, we examine downstream tasks, application domains, evaluation methodologies, and industrial use cases of GraphRAG. Finally, we explore future research directions to inspire further inquiries and advance progress in the field. In order to track recent progress in this field, we set up a repository at \url{https://github.com/pengboci/GraphRAG-Survey}., Comment: Ongoing work. Compared to the first version, several references have been added and a GitHub repository link has been provided

Graph Transformers (GTs) have recently achieved significant success in the graph domain by effectively capturing both long-range dependencies and graph inductive biases. However, these methods face two primary challenges: (1) multi-view chaos, which results from coupling multi-view information (positional, structural, attribute), thereby impeding flexible usage and the interpretability of the propagation process. (2) local-global chaos, which arises from coupling local message passing with global attention, leading to issues of overfitting and over-globalizing. To address these challenges, we propose a high-level decoupled perspective of GTs, breaking them down into three components and two interaction levels: positional attention, structural attention, and attribute attention, alongside local and global interaction. Based on this decoupled perspective, we design a decoupled graph triple attention network named DeGTA, which separately computes multi-view attentions and adaptively integrates multi-view local and global information. This approach offers three key advantages: enhanced interpretability, flexible design, and adaptive integration of local and global information. Through extensive experiments, DeGTA achieves state-of-the-art performance across various datasets and tasks, including node classification and graph classification. Comprehensive ablation studies demonstrate that decoupling is essential for improving performance and enhancing interpretability. Our code is available at: https://github.com/wangxiaotang0906/DeGTA

In the graph domain, deep graph networks based on Message Passing Neural Networks (MPNNs) or Graph Transformers often cause over-smoothing of node features, limiting their expressive capacity. Many upsampling techniques involving node and edge manipulation have been proposed to mitigate this issue. However, these methods often require extensive manual labor, resulting in suboptimal performance and lacking a universal integration strategy. In this study, we introduce UniGAP, a universal and adaptive graph upsampling technique for graph data. It provides a universal framework for graph upsampling, encompassing most current methods as variants. Moreover, UniGAP serves as a plug-in component that can be seamlessly and adaptively integrated with existing GNNs to enhance performance and mitigate the over-smoothing problem. Through extensive experiments, UniGAP demonstrates significant improvements over heuristic data augmentation methods across various datasets and metrics. We analyze how graph structure evolves with UniGAP, identifying key bottlenecks where over-smoothing occurs, and providing insights into how UniGAP addresses this issue. Lastly, we show the potential of combining UniGAP with large language models (LLMs) to further improve downstream performance. Our code is available at: https://github.com/wangxiaotang0906/UniGAP

Multimodal Large Language Models (MLLMs) have shown significant promise in various applications, leading to broad interest from researchers and practitioners alike. However, a comprehensive evaluation of their long-context capabilities remains underexplored. To address these gaps, we introduce the MultiModal Needle-in-a-haystack (MMNeedle) benchmark, specifically designed to assess the long-context capabilities of MLLMs. Besides multi-image input, we employ image stitching to further increase the input context length, and develop a protocol to automatically generate labels for sub-image level retrieval. Essentially, MMNeedle evaluates MLLMs by stress-testing their capability to locate a target sub-image (needle) within a set of images (haystack) based on textual instructions and descriptions of image contents. This setup necessitates an advanced understanding of extensive visual contexts and effective information retrieval within long-context image inputs. With this benchmark, we evaluate state-of-the-art MLLMs, encompassing both API-based and open-source models. The findings reveal that GPT-4o consistently surpasses other models in long-context scenarios, but suffers from hallucination problems in negative samples, i.e., when needles are not in the haystacks. Our comprehensive long-context evaluation of MLLMs also sheds lights on the considerable performance gap between API-based and open-source models. All the code, data, and instructions required to reproduce the main results are available at https://github.com/Wang-ML-Lab/multimodal-needle-in-a-haystack.

Large Language Models (LLMs) often suffer from overconfidence during inference, particularly when adapted to downstream domain-specific tasks with limited data. Previous work addresses this issue by employing approximate Bayesian estimation after the LLMs are trained, enabling them to quantify uncertainty. However, such post-training approaches' performance is severely limited by the parameters learned during training. In this paper, we go beyond post-training Bayesianization and propose Bayesian Low-Rank Adaptation by Backpropagation (BLoB), an algorithm that continuously and jointly adjusts both the mean and covariance of LLM parameters throughout the whole fine-tuning process. Our empirical results verify the effectiveness of BLoB in terms of generalization and uncertainty estimation, when evaluated on both in-distribution and out-of-distribution data., Comment: Accepted at NeurIPS 2024

The recent success of large language models (LLMs) trained on static, pre-collected, general datasets has sparked numerous research directions and applications. One such direction addresses the non-trivial challenge of integrating pre-trained LLMs into dynamic data distributions, task structures, and user preferences. Pre-trained LLMs, when tailored for specific needs, often experience significant performance degradation in previous knowledge domains -- a phenomenon known as "catastrophic forgetting". While extensively studied in the continual learning (CL) community, it presents new manifestations in the realm of LLMs. In this survey, we provide a comprehensive overview of the current research progress on LLMs within the context of CL. This survey is structured into four main sections: we first describe an overview of continually learning LLMs, consisting of two directions of continuity: vertical continuity (or vertical continual learning), i.e., continual adaptation from general to specific capabilities, and horizontal continuity (or horizontal continual learning), i.e., continual adaptation across time and domains (Section 3). We then summarize three stages of learning LLMs in the context of modern CL: Continual Pre-Training (CPT), Domain-Adaptive Pre-training (DAP), and Continual Fine-Tuning (CFT) (Section 4). Then we provide an overview of evaluation protocols for continual learning with LLMs, along with the current available data sources (Section 5). Finally, we discuss intriguing questions pertaining to continual learning for LLMs (Section 6). The full list of papers examined in this survey is available at https://github.com/Wang-ML-Lab/llm-continual-learning-survey., Comment: 47 pages, 2 figures, 4 tables. Work in progress

Rich textual and topological information of textual graphs need to be modeled in real-world applications such as webpages, e-commerce, and academic articles. Practitioners have been long following the path of adopting a shallow text encoder and a subsequent graph neural network (GNN) to solve this problem. In light of recent advancements in large language models (LLMs), it is apparent that integrating LLMs for enhanced textual encoding can substantially improve the performance of textual graphs. Nevertheless, the efficiency of these methods poses a significant challenge. In this paper, we propose ENGINE, a parameter- and memory-efficient fine-tuning method for textual graphs with an LLM encoder. The key insight is to combine the LLMs and GNNs through a tunable side structure, which significantly reduces the training complexity without impairing the joint model's capacity. Extensive experiments on textual graphs demonstrate our method's effectiveness by achieving the best model performance, meanwhile having the lowest training cost compared to previous methods. Moreover, we introduce two variants with caching and dynamic early exit to further enhance training and inference speed. Specifically, caching accelerates ENGINE's training by 12x, and dynamic early exit achieves up to 5x faster inference with a negligible performance drop (at maximum 1.17% relevant drop across 7 datasets). Our codes are available at: https://github.com/ZhuYun97/ENGINE, Comment: Accepted by IJCAI2024

Domain incremental learning aims to adapt to a sequence of domains with access to only a small subset of data (i.e., memory) from previous domains. Various methods have been proposed for this problem, but it is still unclear how they are related and when practitioners should choose one method over another. In response, we propose a unified framework, dubbed Unified Domain Incremental Learning (UDIL), for domain incremental learning with memory. Our UDIL **unifies** various existing methods, and our theoretical analysis shows that UDIL always achieves a tighter generalization error bound compared to these methods. The key insight is that different existing methods correspond to our bound with different **fixed** coefficients; based on insights from this unification, our UDIL allows **adaptive** coefficients during training, thereby always achieving the tightest bound. Empirical results show that our UDIL outperforms the state-of-the-art domain incremental learning methods on both synthetic and real-world datasets. Code will be available at https://github.com/Wang-ML-Lab/unified-continual-learning., Comment: Accepted at NeurIPS 2023

Graph-structured data is ubiquitous in the world which models complex relationships between objects, enabling various Web applications. Daily influxes of unlabeled graph data on the Web offer immense potential for these applications. Graph self-supervised algorithms have achieved significant success in acquiring generic knowledge from abundant unlabeled graph data. These pre-trained models can be applied to various downstream Web applications, saving training time and improving downstream (target) performance. However, different graphs, even across seemingly similar domains, can differ significantly in terms of attribute semantics, posing difficulties, if not infeasibility, for transferring the pre-trained models to downstream tasks. Concretely speaking, for example, the additional task-specific node information in downstream tasks (specificity) is usually deliberately omitted so that the pre-trained representation (transferability) can be leveraged. The trade-off as such is termed as "transferability-specificity dilemma" in this work. To address this challenge, we introduce an innovative deployment module coined as GraphControl, motivated by ControlNet, to realize better graph domain transfer learning. Specifically, by leveraging universal structural pre-trained models and GraphControl, we align the input space across various graphs and incorporate unique characteristics of target data as conditional inputs. These conditions will be progressively integrated into the model during fine-tuning or prompt tuning through ControlNet, facilitating personalized deployment. Extensive experiments show that our method significantly enhances the adaptability of pre-trained models on target attributed datasets, achieving 1.4-3x performance gain. Furthermore, it outperforms training-from-scratch methods on target data with a comparable margin and exhibits faster convergence., Comment: Accepted by The Web Conference 2024 (WWW 2024)

In this work, we investigate the problem of out-of-distribution (OOD) generalization for unsupervised learning methods on graph data. This scenario is particularly challenging because graph neural networks (GNNs) have been shown to be sensitive to distributional shifts, even when labels are available. To address this challenge, we propose a \underline{M}odel-\underline{A}gnostic \underline{R}ecipe for \underline{I}mproving \underline{O}OD generalizability of unsupervised graph contrastive learning methods, which we refer to as MARIO. MARIO introduces two principles aimed at developing distributional-shift-robust graph contrastive methods to overcome the limitations of existing frameworks: (i) Information Bottleneck (IB) principle for achieving generalizable representations and (ii) Invariant principle that incorporates adversarial data augmentation to obtain invariant representations. To the best of our knowledge, this is the first work that investigates the OOD generalization problem of graph contrastive learning, with a specific focus on node-level tasks. Through extensive experiments, we demonstrate that our method achieves state-of-the-art performance on the OOD test set, while maintaining comparable performance on the in-distribution test set when compared to existing approaches. The source code for our method can be found at: https://github.com/ZhuYun97/MARIO, Comment: 21 pages, 15 figures

Albeit having gained significant progress lately, large-scale graph representation learning remains expensive to train and deploy for two main reasons: (i) the repetitive computation of multi-hop message passing and non-linearity in graph neural networks (GNNs); (ii) the computational cost of complex pairwise contrastive learning loss. Two main contributions are made in this paper targeting this twofold challenge: we first propose an adaptive-view graph neural encoder (AVGE) with a limited number of message passing to accelerate the forward pass computation, and then we propose a structure-aware group discrimination (SAGD) loss in our framework which avoids inefficient pairwise loss computing in most common GCL and improves the performance of the simple group discrimination. By the framework proposed, we manage to bring down the training and inference cost on various large-scale datasets by a significant margin (250x faster inference time) without loss of the downstream-task performance.

Grounded video description (GVD) encourages captioning models to attend to appropriate video regions (e.g., objects) dynamically and generate a description. Such a setting can help explain the decisions of captioning models and prevents the model from hallucinating object words in its description. However, such design mainly focuses on object word generation and thus may ignore fine-grained information and suffer from missing visual concepts. Moreover, relational words (e.g., "jump left or right") are usual spatio-temporal inference results, i.e., these words cannot be grounded on certain spatial regions. To tackle the above limitations, we design a novel relational graph learning framework for GVD, in which a language-refined scene graph representation is designed to explore fine-grained visual concepts. Furthermore, the refined graph can be regarded as relational inductive knowledge to assist captioning models in selecting the relevant information it needs to generate correct words. We validate the effectiveness of our model through automatic metrics and human evaluation, and the results indicate that our approach can generate more fine-grained and accurate description, and it solves the problem of object hallucination to some extent., Comment: 10 pages, 5 figures, ACM MM 2020

This paper investigates the feasibility of federated representation learning under the constraints of communication cost and privacy protection. Existing works either conduct annotation-guided local training which requires frequent communication or aggregates the client models via weight averaging which has potential risks of privacy exposure. To tackle the above problems, we first identify that self-supervised contrastive local training is robust against the non-identically distributed data, which provides the feasibility of longer local training and thus reduces the communication cost. Then based on the aforementioned robustness, we propose a novel Federated representation Learning framework with Ensemble Similarity Distillation~(FLESD) that utilizes this robustness. At each round of communication, the server first gathers a fraction of the clients' inferred similarity matrices on a public dataset. Then it ensembles the similarity matrices and train the global model via similarity distillation. We verify the effectiveness of FLESD by a series of empirical experiments and show that, despite stricter constraints, it achieves comparable results under multiple settings on multiple datasets., Comment: To appear in FL-AAAI-22 workshop, working in progress

It is a consensus that small models perform quite poorly under the paradigm of self-supervised contrastive learning. Existing methods usually adopt a large off-the-shelf model to transfer knowledge to the small one via distillation. Despite their effectiveness, distillation-based methods may not be suitable for some resource-restricted scenarios due to the huge computational expenses of deploying a large model. In this paper, we study the issue of training self-supervised small models without distillation signals. We first evaluate the representation spaces of the small models and make two non-negligible observations: (i) the small models can complete the pretext task without overfitting despite their limited capacity and (ii) they universally suffer the problem of over clustering. Then we verify multiple assumptions that are considered to alleviate the over-clustering phenomenon. Finally, we combine the validated techniques and improve the baseline performances of five small architectures with considerable margins, which indicates that training small self-supervised contrastive models is feasible even without distillation signals. The code is available at \textit{https://github.com/WOWNICE/ssl-small}., Comment: Accepted by AAAI'22

Although the concept of catastrophic forgetting is straightforward, there is a lack of study on its causes. In this paper, we systematically explore and reveal three causes for catastrophic forgetting in Class Incremental Learning(CIL). From the perspective of representation learning,(i) intra-phase forgetting happens when the learner fails to correctly align the same-phase data as training proceeds and (ii) inter-phase confusion happens when the learner confuses the current-phase data with the previous-phase. From the task-specific point of view, the CIL model suffers from the problem of (iii) classifier deviation. After investigating existing strategies, we observe that there is a lack of study on how to prevent the inter-phase confusion. To initiate the research on this specific issue, we propose a simple yet effective framework, Contrastive Class Concentration for CIL (C4IL). Our framework leverages the class concentration effect of contrastive learning, yielding a representation distribution with better intra-class compactibility and inter-class separability. Empirically, we observe that C4IL significantly lowers the probability of inter-phase confusion and as a result improves the performance on multiple CIL settings of multiple datasets.

The journey of reducing noise from distant supervision (DS) generated training data has been started since the DS was first introduced into the relation extraction (RE) task. For the past decade, researchers apply the multi-instance learning (MIL) framework to find the most reliable feature from a bag of sentences. Although the pattern of MIL bags can greatly reduce DS noise, it fails to represent many other useful sentence features in the datasets. In many cases, these sentence features can only be acquired by extra sentence-level human annotation with heavy costs. Therefore, the performance of distantly supervised RE models is bounded. In this paper, we go beyond typical MIL framework and propose a novel contrastive instance learning (CIL) framework. Specifically, we regard the initial MIL as the relational triple encoder and constraint positive pairs against negative pairs for each instance. Experiments demonstrate the effectiveness of our proposed framework, with significant improvements over the previous methods on NYT10, GDS and KBP., Comment: Accepted by ACL 2021

Recently, a newly proposed self-supervised framework Bootstrap Your Own Latent (BYOL) seriously challenges the necessity of negative samples in contrastive learning frameworks. BYOL works like a charm despite the fact that it discards the negative samples completely and there is no measure to prevent collapse in its training objective. In this paper, we suggest understanding BYOL from the view of our proposed interpretable self-supervised learning framework, Run Away From your Teacher (RAFT). RAFT optimizes two objectives at the same time: (i) aligning two views of the same data to similar representations and (ii) running away from the model's Mean Teacher (MT, the exponential moving average of the history models) instead of BYOL's running towards it. The second term of RAFT explicitly prevents the representation collapse and thus makes RAFT a more conceptually reliable framework. We provide basic benchmarks of RAFT on CIFAR10 to validate the effectiveness of our method. Furthermore, we prove that BYOL is equivalent to RAFT under certain conditions, providing solid reasoning for BYOL's counter-intuitive success.

Visual navigation is a task of training an embodied agent by intelligently navigating to a target object (e.g., television) using only visual observations. A key challenge for current deep reinforcement learning models lies in the requirements for a large amount of training data. It is exceedingly expensive to construct sufficient 3D synthetic environments annotated with the target object information. In this paper, we focus on visual navigation in the low-resource setting, where we have only a few training environments annotated with object information. We propose a novel unsupervised reinforcement learning approach to learn transferable meta-skills (e.g., bypass obstacles, go straight) from unannotated environments without any supervisory signals. The agent can then fast adapt to visual navigation through learning a high-level master policy to combine these meta-skills, when the visual-navigation-specified reward is provided. Evaluation in the AI2-THOR environments shows that our method significantly outperforms the baseline by 53.34% relatively on SPL, and further qualitative analysis demonstrates that our method learns transferable motor primitives for visual navigation.

Existing methods in the Visual Storytelling field often suffer from the problem of generating general descriptions, while the image contains a lot of meaningful contents remaining unnoticed. The failure of informative story generation can be concluded to the model's incompetence of capturing enough meaningful concepts. The categories of these concepts include entities, attributes, actions, and events, which are in some cases crucial to grounded storytelling. To solve this problem, we propose a method to mine the cross-modal rules to help the model infer these informative concepts given certain visual input. We first build the multimodal transactions by concatenating the CNN activations and the word indices. Then we use the association rule mining algorithm to mine the cross-modal rules, which will be used for the concept inference. With the help of the cross-modal rules, the generated stories are more grounded and informative. Besides, our proposed method holds the advantages of interpretation, expandability, and transferability, indicating potential for wider application. Finally, we leverage these concepts in our encoder-decoder framework with the attention mechanism. We conduct several experiments on the VIsual StoryTelling~(VIST) dataset, the results of which demonstrate the effectiveness of our approach in terms of both automatic metrics and human evaluation. Additional experiments are also conducted showing that our mined cross-modal rules as additional knowledge helps the model gain better performance when trained on a small dataset., Comment: 9 pages, to appear in ACM Multimedia 2019