508 results on '"Sheng Hsien Lin"'
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2. Excited-state intramolecular proton transfer with and without the assistance of vibronic-transition-induced skeletal deformation in phenol–quinoline
- Author
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Ya-Jing Peng, Sheng Hsien Lin, Shi-Bo Yu, Chaoyuan Zhu, Yu-Hui Liu, and Chen-Wen Wang
- Subjects
Materials science ,Proton ,Hydrogen bond ,General Chemical Engineering ,Intramolecular force ,Potential energy surface ,Vibronic spectroscopy ,Molecule ,Density functional theory ,General Chemistry ,Photochemistry ,Excitation - Abstract
The excited-state intramolecular proton transfer (ESIPT) reaction of two phenol-quinoline molecules (namely PQ-1 and PQ-2) were investigated using time-dependent density functional theory. The five-(six-) membered-ring carbocycle between the phenol and quinolone moieties in PQ-1 (PQ-2) actually causes a relatively loose (tight) hydrogen bond, which results in a small-barrier (barrier-less) on an excited-state potential energy surface with a slow (fast) ESIPT process with (without) involving the skeletal deformation motion up to the electronic excitation. The skeletal deformation motion that is induced from the largest vibronic excitation with low frequency can assist in decreasing the donor-acceptor distance and lowering the reaction barrier in the excited-state potential energy surface, and thus effectively enhance the ESIPT reaction for PQ-1. The Franck-Condon simulation indicated that the low-frequency mode with vibronic excitation 0 → 1' is an original source of the skeletal deformation vibration. The present simulation presents physical insights for phenol-quinoline molecules in which relatively tight or loose hydrogen bonds can influence the ESIPT reaction process with and without the assistance of the skeletal deformation motion.
- Published
- 2021
- Full Text
- View/download PDF
3. Double-Input PWM DC/DC Converter for High-/Low-Voltage Sources.
- Author
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Yaow-Ming Chen, Yuan-Chuan Liu, and Sheng-Hsien Lin
- Published
- 2006
- Full Text
- View/download PDF
4. Advances In Multi-photon Processes And Spectroscopy, Vol 20: (Volume 20)
- Author
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Sheng-hsien Lin, Yuichi Fujimura, Albert A Villaeys
- Published
- 2011
5. Advances In Multi-photon Processes And Spectroscopy, Vol 19: (Volume 19)
- Author
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Sheng-hsien Lin, Yuichi Fujimura, Albert A Villaeys
- Published
- 2010
6. Advances In Multi-photon Processes And Spectroscopy, Vol 18: (Volume 18)
- Author
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Sheng-hsien Lin, Yuichi Fujimura, Albert A Villaeys
- Published
- 2008
7. The absorption and fluorescence spectra of 4-(3-methoxybenzylidene)-2-methyl-oxazalone interpreted by Franck–Condon simulation in various pH solvent environments
- Author
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Hang Su, Chaoyuan Zhu, Sheng Hsien Lin, Yu-Hui Liu, and Ya-Jing Peng
- Subjects
Solvent ,Chemistry ,Excited state ,Analytical chemistry ,Cationic polymerization ,General Physics and Astronomy ,Molecule ,Emission spectrum ,Time-dependent density functional theory ,Physical and Theoretical Chemistry ,Absorption (chemistry) ,Fluorescence - Abstract
The absorption and fluorescence spectra of 4-(3-methoxybenzylidene)-2-methyl-oxazalone (m-MeOBDI) dissolved in neutral, acidic, and basic solvent environments have been investigated and assigned by using Franck–Condon (FC) simulations at the quantum TDDFT level. Four different structures of m-MeOBDI in the ground and excited states are optimized and are found to be responsible for the observed absorption and fluorescence spectra. The (absorption) fluorescence of m-MeOBDI in pure methanol and neutral/basic methanol/water (1/9 vol) mixed solvent is found to arise from the (ground neutral N-I) excited neutral N-I* and cationic C-III* species, respectively. In acidic solvent, the absorption is found to arise from ground acidic C-II species, and the excited divalent cation DC-IV* is found to be formed in its excited state due to the excess H+ in the solution, and then it emits ∼560 nm fluorescence. FC simulations have also been employed to confirm our assignments as well as interpret the vibronic band profiles. As expected, the simulated emission spectrum of the divalent cationic species is in good agreement with the experimental observation. Therefore, within the present FC simulation, the observed absorption and fluorescence spectra have been reasonably interpreted and novel fluorescence mechanisms of m-MeOBDI in various pH solvent environments have been proposed.
- Published
- 2020
- Full Text
- View/download PDF
8. Advances In Multi-photon Processes And Spectroscopy, Vol 17: (Volume 17)
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Sheng-hsien Lin, Albert A Villaeys, Yuichi Fujimura
- Published
- 2006
9. Enhanced photovoltaic performance of dye-sensitized solar cells by the adsorption of Zn-porphyrin dye molecule on TiO2 surfaces
- Author
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Yanming Lin, Qi Wang, Ruiqin Zhang, Yali Zhao, Sheng Hsien Lin, Zhenyi Jiang, and Chaoyuan Zhu
- Subjects
Anatase ,Materials science ,Mechanical Engineering ,Metals and Alloys ,Charge density ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Photochemistry ,01 natural sciences ,Porphyrin ,0104 chemical sciences ,chemistry.chemical_compound ,Dye-sensitized solar cell ,Adsorption ,Absorption edge ,chemistry ,Mechanics of Materials ,Materials Chemistry ,Density functional theory ,0210 nano-technology ,Visible spectrum - Abstract
The electronic structure, optical absorption and charge transfer performances of Zn-porphyrin (ZnPP) dye molecule adsorbed on anatase (101) and rutile (110) TiO2 surfaces have been investigated systematically using spin-polarized density functional theory calculations. The calculated results indicate that the strong interactions of ZnPP dye molecule and TiO2 surfaces cause an obvious variation of the conduction band minimum and valence band maximum for ZnPP dye molecule adsorbed on TiO2 surfaces, and the valence band of adsorption systems has a large bandwidth compared with that of the TiO2 bulk and surfaces, which induces a red-shift of the optical absorption edge and improves greatly the optical absorption of adsorption systems in the ultraviolet and visible light regions. Moreover, the change of charge density indicates that the photoelectrons transfer from the ZnPP dye molecule to TiO2 across the interface, and a built-in electric field is formed at the interface, which effectively enhances the separation of photogenerated electron-hole pairs. These results suggest that the sensitized actions of ZnPP dye molecule on TiO2 surfaces can generate an excellent photovoltaic performance of TiO2 photoanode in DSSCs.
- Published
- 2019
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10. Advances In Multi-photon Processes And Spectroscopy, Vol 15: (Volume 15)
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Sheng-hsien Lin, Albert A Villaeys, Yuichi Fujimura
- Published
- 2003
11. Spectroscopy And Dynamics Of Orientationally Structured Adsorbates
- Author
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Sheng-hsien Lin, Viktor M Rozenbaum
- Published
- 2002
12. Constraint Trajectory Surface-Hopping Molecular Dynamics Simulation of the Photoisomerization of Stilbene
- Author
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Yibo Lei, Shaomei Wu, Chaoyuan Zhu, Zhenyi Wen, and Sheng-Hsien Lin
- Subjects
Renewable energy sources ,TJ807-830 - Abstract
Combining trajectory surface hopping (TSH) method with constraint molecular dynamics, we have extended TSH method from full to flexible dimensional potential energy surfaces. Classical trajectories are carried out in Cartesian coordinates with constraints in internal coordinates, while nonadiabatic switching probabilities are calculated separately in free internal coordinates by Landau-Zener and Zhu-Nakamura formulas along the seam. Two-dimensional potential energy surfaces of ground S0 and excited S1 states are constructed analytically in terms of torsion angle and one dihedral angle around the central ethylenic C=C bond, and the other internal coordinates are all fixed at configuration of the conical intersection. At this conical intersection, the branching ratio from the present simulation is 48 : 52 (33 : 67) initially starting from trans(cis)-Stilbene in comparison with experimental value 50 : 50. Quantum yield for trans-to-cis isomerization is estimated as 49% in very good agreement with experimental value of 55%, while quantum yield for cis-to-trans isomerization is estimated as 47% in comparison with experimental value of 35%.
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- 2014
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13. Advances In Multi-photon Processes And Spectroscopy, Vol 12: (Volume 12)
- Author
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Minhaeng Cho, Yuichi Fujimura, Sheng-hsien Lin
- Published
- 1999
14. Relaxation high-temperature ratchets
- Author
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Viktor M. Rozenbaum, Sheng Hsien Lin, Dah Yen Yang, Sheh-Yi Sheu, I. V. Shapochkina, and Leonid I. Trakhtenberg
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Statistics and Probability ,Physics ,business.industry ,Relaxation (NMR) ,Statistical and Nonlinear Physics ,Function (mathematics) ,Mechanics ,01 natural sciences ,010305 fluids & plasmas ,Brownian motor ,0103 physical sciences ,Particle velocity ,Diffusion (business) ,010306 general physics ,Adiabatic process ,business ,Brownian motion ,Thermal energy - Abstract
We consider the overdamped motion of a Brownian particle in an asymmetric spatially periodic potential which fluctuates periodically in time, under assumption of finite duration of the relaxation response of the system on deterministic dichotomous fluctuations. It is assumed that the period of these fluctuations is much larger than the characteristic diffusion time and the potential barrier height is small as compared to the thermal energy (an adiabatic high-temperature flashing ratchet). We derive an analytical expression for the average particle velocity, which is concretized for a saw-tooth potential profile. It is revealed the different, linear and quadratic, asymptotic behavior of the average velocity as a function of the relaxation time for extremely and not extremely asymmetric potential profiles, respectively. The result is interpreted in terms of the self-similar representation.
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- 2019
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15. Extremely solvent-enhanced absorbance and fluorescence of carbazole interpreted using a damped Franck-Condon simulation
- Author
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Chen Wen Wang, Chaoyuan Zhu, and Sheng Hsien Lin
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Materials science ,010304 chemical physics ,Carbazole ,General Physics and Astronomy ,010402 general chemistry ,01 natural sciences ,Fluorescence ,Molecular physics ,Spectral line ,0104 chemical sciences ,Absorbance ,chemistry.chemical_compound ,chemistry ,Normal mode ,0103 physical sciences ,Molecule ,Physics::Chemical Physics ,Physical and Theoretical Chemistry ,Absorption (electromagnetic radiation) ,Scaling - Abstract
Extremely solvent-enhanced absorption and fluorescence spectra of carbazole were investigated by performing a generalized multi-set damped Franck-Condon spectral simulation. Experimental absorption and fluorescence spectra of carbazole in the gas phase were first well reproduced by performing an un-damped Franck-Condon simulation, but a one-set scaling damped Franck-Condon simulation severely underestimated the intensities of the peaks of experimental absorption and fluorescence spectra of carbazole in n-hexane. Then, a multi-set scaling damped Franck-Condon simulation was proposed and carried out for simulating the extremely solvent-enhanced absorbance and fluorescence, and here, the simulated spectra agreed well with the experimental ones. Five (four) representative solvent-enhanced normal modes corresponding to the combination of ring stretching and ring breathing vibrational motions were determined to be responsible for enhanced absorbance (fluorescence) in n-hexane solution. Furthermore, different scalings were applied to the ground and first-excited states, resulting in different enhancement of absorbance and fluorescence, and this analysis revealed atoms in the carbazole interacting with n-hexane solvent molecules and, hence, leading to different normal-mode vibrational vector patterns in the ground and first-excited states, respectively. Basically, the same conclusion was drawn from a simulation with HF-CIS and the three functionals (TD)B3LYP, (TD)B3LYP-35, and (TD)BHandHLYP. The present multi-set scaling damped Franck-Condon simulation scheme was demonstrated to successfully interpret extremely solvent-enhanced absorbance and fluorescence of carbazole in n-hexane-solvent.
- Published
- 2020
16. Modeling of folding and unfolding mechanisms in alanine-based [alpha]-helical polypeptides
- Author
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Morozov, Alexander N. and Sheng Hsien Lin
- Subjects
Polypeptides -- Chemical properties ,Polypeptides -- Thermal properties ,Monte Carlo method -- Usage ,Chemicals, plastics and rubber industries - Abstract
The experimental and calculation data for short alanine-based peptides embedded in water is used to model the mechanism of helix folding and unfolding and to calculate microscopically the free energy factors of alanine in the frame of helix coil conformational integrals. Monte Carlo numerical simulations of thermodynamics and kinetics for the 21 amino acid [alpha]-helical polypeptide Ac-A5(AAARA)3A-NMe are conducted and found to be in an agreement with the experimental results.
- Published
- 2006
17. Directed motion from particle size oscillations inside an asymmetric channel.
- Author
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Makhnovskii, Yurii A., Sheh-Yi Sheu, Dah-Yen Yang, and Sheng Hsien Lin
- Subjects
BROWNIAN motion ,COMPUTER simulation ,PARTICLE size distribution ,OSCILLATIONS ,DIFFUSION coefficients - Abstract
The motion of a spherical Brownian particle in an asymmetric periodic channel is considered. Under an external periodic stimulus, the particle switches between two states with different particle radius, every half-period. Using Brownian dynamics simulations, we show that the particle size oscillation, combined with the asymmetry of the channel, induces a drift along the channel axis, directed towards the steeper wall of the channel. The oscillation of the particle size is accompanied by a time variation of the space accessible to the particle and by an oscillation of its diffusion coefficient. The former underlies the drift inducing mechanism of purely entropic nature. The latter, combined with the former, leads to a significant amplification of the effect. The drift velocity vanishes when interconversion between the states occurs either very slow or very fast, having a maximum in between. The position and magnitude of the maximum are discussed by providing an analytical approach based on intuitively appealing assumptions. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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18. Advances In Multi-photon Processes And Spectroscopy, Vol 10: (Volume 10)
- Author
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Kenneth P Ghiggino, Reza Islampour, Sheng-hsien Lin
- Published
- 1996
19. Pressure-enhanced C-H...O interactions in aqueous tert-butyl alcohol
- Author
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Hai-Chou Chang, Ching-Wei Chuang, Jyh-Chiang Jiang, Sheng Hsien Lin, Chih-Chia Su, Li-Chuan Lu, and Chia-Jung Hsiao
- Subjects
Water -- Chemical properties ,Hydrogen bonding -- Research ,Chemicals, plastics and rubber industries - Abstract
Pressure-enhanced C-H...O interactions in tert-butyl alcohol (TBA)/D2O mixtures are investigated. A pressure-dependent study of the C-H absorption bands indicated that the peak frequency of the strongest C-H stretch band of tert-butyl alcohol in a dilute D2O solution has an unusual nonmonotonic pressure dependence, it initially blue shifts, then red shifts, then blue shifts again with increasing pressure.
- Published
- 2004
20. Molecular twisting and relaxation in the excited state of triarylpyrylium cations
- Author
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Abramavicius, Darius, Gulbinas, Vidas, Valkunas, Leonas, Ying-Jen Shiu, Kuo Kan Liang, Hayashi, Michitoshi, and Sheng Hsien Lin
- Subjects
Absorption spectra -- Usage ,Alcohol -- Research ,Alcohol, Denatured -- Research ,Cations -- Research ,Molecular structure -- Analysis ,Chemicals, plastics and rubber industries - Abstract
Excited-state twisting and relaxation of triarylpyrylium cations is studied with various substituents attached to different parts of the molecule by means of femtosecond pump-probe absorption spectroscopy. The modeling shows that a broad population distribution along the twisting angle in the ground state is transferred to the excited state, causing strong fluorescene broadening, while competition between the excited-state twisting and solvation determines a subsequent reaction path.
- Published
- 2002
21. Correlation between optical properties and chain-length in a quasi -one dimensional electronic polymer
- Author
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Jui-Hung Hsu; Gung-Yeong Perng, Michi-toshi Hayashi; Shaw-An Chen, Sheng-Hsien Lin, Wunshain Fann, and Rothberg, Lewis J.
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Chloroform -- Research ,Chloroform -- Optical properties ,Molecules -- Research ,Polymers -- Optical properties ,Polymers -- Research ,Polymers -- Atomic properties ,Chemicals, plastics and rubber industries - Abstract
The molecular weight dependence of the photophysics of a soluble electroluminiscent conjugated polymer DOO-PPV in dilute chloroform solution is studied. The study shows that the fluorescence yield of the polymer decreases even though the radiative rate is found to increase.
- Published
- 2002
22. Photoluminescence spectroscopy of silica-based mesoporous materials
- Author
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Glinka, Yuri D., Sheng-Hsien Lin, Lian-Pin Hwang, and Yit-Tsong Chen
- Subjects
Excited state chemistry -- Research ,Silica -- Optical properties ,Photoluminescence -- Research ,Chemicals, plastics and rubber industries - Abstract
The experimental study of photoluminescence (PL) at 300 and 90 K from the mesoporous silicas (MSs) [ordered (MCM-41) and disordered (DMSs)] of variously sized pores induced either by ArF laser light (lambda (sub exc) = 193 nm) or by Nd:YAG (yttrium-aluminum-garnet) laser light (lambda (sub exc)=266 nm) is reported. The results reveal that PL spectra measured with 266-and 193-nm excitations are somewhat different because of the different mechanisms of excitation: direct one-proton and indirect through the TP-produced free excitons (FEs), respectively.
- Published
- 2000
23. Advances In Multi-photon Processes And Spectroscopy, Vol 6: (Volume 6)
- Author
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Rhett G Alden, Andre D Bandrauk, Sheng-hsien Lin
- Published
- 1990
24. Theory of slightly fluctuating ratchets
- Author
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Leonid I. Trakhtenberg, I. V. Shapochkina, Sheng Hsien Lin, and Viktor M. Rozenbaum
- Subjects
Physics ,Physics and Astronomy (miscellaneous) ,Ratchet ,Function (mathematics) ,01 natural sciences ,Potential energy ,010305 fluids & plasmas ,Classical mechanics ,0103 physical sciences ,Relaxation (physics) ,Particle velocity ,Perturbation theory (quantum mechanics) ,Statistical physics ,Diffusion (business) ,010306 general physics ,Brownian motion - Abstract
We consider a Brownian particle moving in a slightly fluctuating potential. Using the perturbation theory on small potential fluctuations, we derive a general analytical expression for the average particle velocity valid for both flashing and rocking ratchets with arbitrary, stochastic or deterministic, time dependence of potential energy fluctuations. The result is determined by the Green’s function for diffusion in the time-independent part of the potential and by the features of correlations in the fluctuating part of the potential. The generality of the result allows describing complex ratchet systems with competing characteristic times; these systems are exemplified by the model of a Brownian photomotor with relaxation processes of finite duration.
- Published
- 2017
- Full Text
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25. Drift of particles caused by fluctuations of their sizes
- Author
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V. Yu. Zitserman, Sheng Hsien Lin, Yu. A. Makhnovskii, Leonid I. Trakhtenberg, and Dah Yen Yang
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Physics ,Drift velocity ,Physics and Astronomy (miscellaneous) ,Solid-state physics ,02 engineering and technology ,Particle drift ,Mechanics ,021001 nanoscience & nanotechnology ,01 natural sciences ,Amplitude ,0103 physical sciences ,Brownian dynamics ,Particle size ,Statistical physics ,010306 general physics ,0210 nano-technology ,Entropy (arrow of time) - Abstract
Externally stimulated fluctuations of the size of a particle in an asymmetric environment result in its directional motion. This is demonstrated by considering the particle drift in a periodic symmetric channel, which arises due to fluctuations of the particle size. The emergence of the drift is caused by the time variation of the particle entropy, whereas fluctuations of the diffusion coefficient accompanying fluctuations of the size enhance the drift. The effect of the geometry of the channel and the amplitude and frequency of fluctuations on the drift velocity is studied by the Brownian dynamics method. A coarse-grained analytical description of the process is proposed whose predictions are in satisfactory agreement with the results of simulation.
- Published
- 2017
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26. Laser manipulation of localised π-electron rotations in a molecule with two aromatic rings
- Author
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Yoshiaki Teranishi, Sheng Hsien Lin, Masahiro Yamaki, and Yuichi Fujimura
- Subjects
010304 chemical physics ,Chemistry ,Biophysics ,Aromaticity ,Electron ,010402 general chemistry ,Condensed Matter Physics ,medicine.disease_cause ,Laser ,01 natural sciences ,0104 chemical sciences ,law.invention ,symbols.namesake ,Stark effect ,law ,Excited state ,0103 physical sciences ,medicine ,symbols ,Molecule ,Physical and Theoretical Chemistry ,Atomic physics ,Molecular Biology ,Ultraviolet ,Coherence (physics) - Abstract
Coherent dynamics of localised π-electron rotations in an aromatic ring molecule may play an important role in designing next generation photo-induced organic molecular devices. In this paper, we present a theoretical study of laser control of localised π-electron rotations in a low symmetry aromatic ring molecule, which are created by the coherence of two or more electronic excited states. The control scenario is to manipulate energy spacings between two electronic states by utilising AC Stark shift induced by strong non-resonant ultraviolet (UV) laser. We set three targets for laser manipulation of localised electron rotational dynamics for (P)-2,2′-biphenol with two aromatic rings. The first target is flipping of the direction of the localised π-electron rotation on the same ring, the second one is the transfer of the π-electron rotation localisation from one aromatic ring to the other, and the third one is freezing the unidirectional π-electron rotation localised on one aromatic ring. We propo...
- Published
- 2017
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27. Electronic sum-frequency generation (ESFG) spectroscopy: theoretical formulation of resonances with symmetry-allowed and symmetry-forbidden electronic excited states
- Author
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Chih-Kai Lin, Sheng Hsien Lin, Yu-De Lin, and Jian Lei
- Subjects
Sum-frequency generation ,Chemistry ,Biophysics ,Molecular orbital theory ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,Dipole ,Vibronic coupling ,Excited state ,Vibronic spectroscopy ,Density functional theory ,Physical and Theoretical Chemistry ,Atomic physics ,0210 nano-technology ,Spectroscopy ,Molecular Biology - Abstract
Sum-frequency generation spectroscopy is a powerful tool for analysing molecular species and orientation configurations on a surface or an interface. In addition to conventional vibrational resonant techniques, the electronic resonant (electronic sum-frequency generation [ESFG]) ones have been developed recently. We have established the theoretical formulation of ESFG spectroscopy based on the susceptibility approach, considering resonances with both symmetry-allowed and symmetry-forbidden electronic excited states; derivatives of transition dipole moments and vibronic couplings beyond the Condon approximation were included. With the aid of density functional theory computations, simulated ESFG spectra in resonances with both types of excited states of acetone are demonstrated.
- Published
- 2017
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28. The electronic structure, optical absorption and photocatalytic water splitting of (Fe + Ni)-codoped TiO2: A DFT +U study
- Author
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Xiaodong Zhang, Ruiqin Zhang, Yanming Lin, Sheng Hsien Lin, Xiaoyun Hu, Zhenyi Jiang, Haiyan Zhu, and Chaoyuan Zhu
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Anatase ,Materials science ,Renewable Energy, Sustainability and the Environment ,Band gap ,Doping ,Energy Engineering and Power Technology ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Photochemistry ,01 natural sciences ,0104 chemical sciences ,Nanomaterials ,Electronegativity ,Fuel Technology ,Physical chemistry ,Density functional theory ,0210 nano-technology ,Absorption (electromagnetic radiation) ,Photocatalytic water splitting - Abstract
The electronic and optical properties of Fe or/and Ni (co)doped anatase and rutile TiO2 were investigated using the spin-polarized density functional theory. Our calculated results indicate that the synergistic effect of (Fe + Ni) codoping can lead to a band gap narrowing and the hybridized states of Fe 3d and Ni 3d appearing in the forbidden gap, which enhances greatly the optical absorption of TiO2 nanomaterials from the ultraviolet-light to the infrared-light region and reduces the recombination of photogenerated electron–hole pairs. In particular, (Fe + Ni) codoping can improve greatly the infrared-light absorption of TiO2 nanomaterials. Furthermore, the researches of electronegativity show that (Fe + Ni)-codoped TiO2 system has a stronger redox power for hydrogen generation by photocatalytic water splitting compared with pure, Fe-doped, and Ni-doped TiO2 systems. These results lead to an outstanding solar energy photocatalytic water splitting for hydrogen generation in (Fe + Ni)-codoped TiO2 photocatalyst.
- Published
- 2017
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29. Dynamic Stark-Induced Coherent π-Electron Rotations in a Chiral Aromatic Ring Molecule: Application to Phenylalanine
- Author
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Hirobumi Mineo, Sheng Hsien Lin, Gap Sue Kim, and Yuichi Fujimura
- Subjects
Angular momentum ,010304 chemical physics ,Chemistry ,Degenerate energy levels ,Electron ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Coherent ring ,Schrödinger equation ,symbols.namesake ,Coherent control ,Position (vector) ,Quantum mechanics ,Excited state ,0103 physical sciences ,symbols ,Physical and Theoretical Chemistry - Abstract
We present the results of a theoretical study on dynamic Stark-induced coherent π-electron rotations in a chiral aromatic ring molecule. This is an extension of our previous papers, which have been published in Mineo , H. [ Phys. Chem. Chem. Phys. 2016 , 18 , 26786 - 26795 ] and Mineo , H. [ J. Phys. Chem. Lett. 2018 , 9 , 5521 - 5526 ]. In those papers, the time-dependent Schrodinger equation was solved under a restricted condition in which a degenerate excited state should be formed at the center of the two relevant excited states by dynamic Stark effects. The dynamic Stark-induced degenerate state (DSIDS) is essential to create unidirectional π-electron rotations. In the present theoretical treatment, the above restriction is relaxed and the DSIDS is set to be at any energy position between the two excited states. This indicates a wide applicability of the dynamic Stark effects to coherent control of photophysical properties in aromatic molecules, such as coherent ring currents and current-induced magnetic fluxes of low-symmetric aromatic molecules. Analytical expressions for the coherent π-electron angular momentum are derived within a three-electronic-state model by using the Laplace transform method. The validity of the developed theoretical procedure is demonstrated by carrying out simulations of the coherent angular momentum of l-phenylalanine. Effects of varying the DSIDS on the time-dependent coherent angular momentum and the populations in the three electronic states are examined, and the results are analyzed using approximate expressions for the time-dependent coherent angular momentum and the populations. Modulations in the time-dependent coherent angular momentum appear when the DSIDS is set at an energy position between the two excited states, while there are no beating modulations when the DSIDS is set at the center position. Such differences originate from whether interferences between the two dressed states take place or not.
- Published
- 2019
30. First-principles study on sum-frequency generation spectroscopy of methanol adsorbed on TiO
- Author
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Zhitao, Shen, Chih-Kai, Lin, Chaoyuan, Zhu, and Sheng Hsien, Lin
- Abstract
In this work, starting from the general theory of sum-frequency generation (SFG), we proposed a computational strategy utilizing density functional theory with periodic boundary conditions to simulate the vibrational SFG of molecules/solid surface adsorption system. The method has been applied to the CH
- Published
- 2019
31. Theoretical Treatment of the Ultrafast Photo-Induced Electron Transfer in Dye-Sensitized Solar Cells
- Author
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Jen Wei Yu, Kuo Kan Liang, and Sheng Hsien Lin
- Subjects
Electron transfer ,Dye-sensitized solar cell ,Materials science ,Photochemistry ,Ultrashort pulse - Published
- 2019
- Full Text
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32. Orientation hydrogen-bonding effect on vibronic spectra of isoquinoline in water solvent: Franck-Condon simulation and interpretation.
- Author
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Yu-Hui Liu, Shi-Ming Wang, Chen-Wen Wang, Chaoyuan Zhu, Ke-Li Han, and Sheng-Hsien Lin
- Subjects
HYDROGEN bonding ,ISOQUINOLINE ,FRANCK-Condon principle ,DENSITY functional theory ,HYDROGEN atom - Abstract
The excited-state orientation hydrogen-bonding dynamics, and vibronic spectra of isoquinoline (IQ) and its cationic form IQc in water have been investigated at the time-dependent density functional theory quantum chemistry level plus Franck-Condon simulation and interpretation. The excited-state orientation hydrogen bond strengthening has been found in IQ:H
2 O complex due to the charge redistribution upon excitation; this is interpreted by simulated 1:1 mixed absorption spectra of free IQ and IQ:H2 O complex having best agreement with experimental results. Conversely, the orientation hydrogen bond in IQc:H2 O complex would be strongly weakening in the S1 state and this is interpreted by simulated absorption spectra of free IQc having best agreement with experimental results. By performing Franck-Condon simulation, it reveals that several important vibrational normal modes with frequencies about 1250 cm-1 involving the wagging motion of the hydrogen atoms are very sensitive to the formation of the orientation hydrogen bond for the IQ/IQc:H2 O complex and this is confirmed by damped Franck-Condon simulation with free IQ/IQc in water. However, the emission spectra of the IQ and IQc in water have been found differently. Upon the excitation, the simulated fluorescence of IQ in water is dominated by the IQ:H2 O complex; thus hydrogen bond between IQ and H2 O is much easier to form in the S1 state. While the weakened hydrogen bond in IQc:H2 O complex is probably cleaved upon the laser pulse because the simulated emission spectrum of the free IQc is in better agreement with the experimental results. [ABSTRACT FROM AUTHOR]- Published
- 2016
- Full Text
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33. Photoinduced diffusion molecular transport.
- Author
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Rozenbaum, Viktor M., Dekhtyar, Marina L., Sheng Hsien Lin, and Trakhtenberg, Leonid I.
- Subjects
DIFFUSION ,BROWNIAN motion ,NANOPARTICLES ,LASER pulses ,ELECTRON distribution - Abstract
We consider a Brownian photomotor, namely, the directed motion of a nanoparticle in an asymmetric periodic potential under the action of periodic rectangular resonant laser pulses which cause charge redistribution in the particle. Based on the kinetics for the photoinduced electron redistribution between two or three energy levels of the particle, the time dependence of its potential energy is derived and the average directed velocity is calculated in the high-temperature approximation (when the spatial amplitude of potential energy fluctuations is small relative to the thermal energy). The thus developed theory of photoinduced molecular transport appears applicable not only to conventional dichotomous Brownian motors (with only two possible potential profiles) but also to a much wider variety of molecular nanomachines. The distinction between the realistic time dependence of the potential energy and that for a dichotomous process (a step function) is represented in terms of relaxation times (they can differ on the time intervals of the dichotomous process). As shown, a Brownian photomotor has the maximum average directed velocity at (i) large laser pulse intensities (resulting in short relaxation times on laser-on intervals) and (ii) excited state lifetimes long enough to permit efficient photoexcitation but still much shorter than laser-off intervals. A Brownian photomotor with optimized parameters is exemplified by a cylindrically shaped semiconductor nanocluster which moves directly along a polar substrate due to periodically photoinduced dipole moment (caused by the repetitive excited electron transitions to a non-resonant level of the nanocylinder surface impurity). [ABSTRACT FROM AUTHOR]
- Published
- 2016
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34. Vibrational investigation of DODC cation for recognition of guanine dimeric hairpin quadruplex studied by satellite holes
- Author
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Cheng, Ji-Yen, Lin, Sheng-Hsien Lin, and Chang, Ta-Chau
- Subjects
Cations -- Analysis ,Guanine -- Analysis ,Chemicals, plastics and rubber industries - Abstract
Local interactions of different structures of G-rich DNA were determined by employing the high-resolution and low-frequency satellite holes (SH) together with vibrations of 3,3'-diethyloxadicarbocyanine cation (DODC+). In addition, a binding structure of dimeric hairpin quadruplex:DODC+ is suggested. The SH findings agree with groove binding model and remove possible ring intercalation in the base pairs of guanine quartet. The implications of the results are discussed.
- Published
- 1998
35. Franck–Condon simulation for unraveling vibronic origin in solvent enhanced absorption and fluorescence spectra of rubrene
- Author
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Sheng Hsien Lin, Ying Hu, Chen Wen Wang, Fenglong Gu, and Chaoyuan Zhu
- Subjects
010304 chemical physics ,Chemistry ,General Chemical Engineering ,Analytical chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Molecular physics ,Quantum chemistry ,Potential energy ,0104 chemical sciences ,Vibronic coupling ,symbols.namesake ,chemistry.chemical_compound ,Solvent models ,Stokes shift ,0103 physical sciences ,Physics::Atomic and Molecular Clusters ,symbols ,Vibronic spectroscopy ,Physics::Chemical Physics ,Absorption (electromagnetic radiation) ,Rubrene - Abstract
Quantum chemistry calculations at the level of (TD)-DFT plus PCM solvent models are employed for analyzing potential energy surfaces and as a result two local minima with D2, two local minima with C2H, and one second-order transition state with D2H group symmetry are found in both ground S0 and excited-state S1 potential energy surfaces. Simulated vibronic coupling distributions indicate that only second-order transition states with D2H group symmetry are responsible for observed absorption and fluorescence spectra of rubrene and vibrational normal-motions related with atoms on the aromatic backbone are active for vibronic spectra. The Stokes shift 1120 cm−1 (820 cm−1) and vibronic-band peak positions in both absorption and fluorescence spectra in non-polar benzene (polar cyclohexane) solvent are well reproduced within the conventional Franck–Condon simulation. By adding damped oscillator correction to Franck–Condon simulation, solvent enhanced vibronic-band intensities and shapes are well reproduced. Four (three) normal modes with vibration frequency around 1550 cm−1 (1350 cm−1) related to ring wagging plus CC stretching and CH bend motions on the backbone are actually interpreted for solvent enhanced absorption (fluorescence) spectra of rubrene in benzene and cyclohexane solutions.
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- 2017
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36. Exploration of hydrogen bond networks and potential energy surfaces of methanol clusters using a two-stage clustering algorithm
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Jer-Lai Kuo, Sheng Hsien Lin, Kun-Lin Ho, and Po-Jen Hsu
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010304 chemical physics ,Chemistry ,Binding energy ,General Physics and Astronomy ,Energy landscape ,010402 general chemistry ,01 natural sciences ,Potential energy ,0104 chemical sciences ,Molecular dynamics ,Chemical physics ,Ab initio quantum chemistry methods ,0103 physical sciences ,Potential energy surface ,Density functional theory ,Physical and Theoretical Chemistry ,Atomic physics ,Topology (chemistry) - Abstract
The potential energy surface (PES), structures and thermal properties of methanol clusters (MeOH)n with n = 8–15 were explored by replica-exchange molecular dynamics (REMD) simulations with an empirical model and refined using density functional theory (DFT) methods. For a given size, local minima structures were sampled from REMD trajectories and archived by a newly developed molecular database via a two-stage clustering algorithm (TSCA). Our TSCA utilizes both the topology of O–H⋯O hydrogen bonding networks and the similarity of the shapes to filter out duplicates. The screened molecular database contains only distinct conformers sampled from REMD and their structures are further optimized by the two DFT methods with and without dispersion correction to examine the influence of dispersion on their structures and binding energies. Inspecting different O–H⋯O networks, the binding energies of methanol clusters are highly degenerated. The degeneracy is more significant with the dispersion effect that introduces weaker but more complex C–H⋯O bonds. Based on the structures we have searched, we were able to extract general trends and these datasets can serve as a starting point for further high-level ab initio calculations to reveal the true energy landscape of methanol clusters.
- Published
- 2017
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37. A TDDFT study on the excited-state double proton transfer reaction of 8-hydroxyquinoline along a hydrogen-bonded bridge
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Chaoyuan Zhu, Shi Ming Wang, Yu Hui Liu, and Sheng Hsien Lin
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Proton ,Hydrogen ,010405 organic chemistry ,Hydrogen bond ,Low-barrier hydrogen bond ,chemistry.chemical_element ,Protonation ,General Chemistry ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Deprotonation ,chemistry ,Excited state ,Materials Chemistry ,Proton-coupled electron transfer - Abstract
The mechanism of the excited-state double proton transfer (ESDPT) reactions of 8-hydroxyquinoline (8HQ) along three types of hydrogen-bonded bridges—ammonia (NH3), water (H2O) and acetic acid (AcOH) has been investigated by using time-dependent density functional theory. Based on the analysis of hydrogen bond strengths and the excited-state potential energy surfaces (PES) along the proton transfer coordinates, it is concluded that the hydrogen bonds play the key role in the excited-state multiple proton transfer reaction. Moreover, three different concerted mechanisms have been found in 8HQ·NH3, 8HQ·H2O and 8HQ·AcOH complexes. Upon photoexcitation, the deprotonation of a hydroxyl group in 8HQ would occur first in 8HQ·NH3 due to the stronger hydrogen bond –OH⋯NH3. On the contrary, the hydrogen bond –OH⋯O–C–OH is much weaker in the 8HQ·AcOH complex, and this leads to a fast protonation of –N– in the 8HQ moiety. For the 8HQ·H2O complex, the hydrogen bond strengths are almost the same, so that both protons would transfer simultaneously in a symmetrical and concerted fashion.
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- 2017
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38. On the validity of the independent interaction model for generation of dynamic Stark-induced degenerate states in chiral aromatic ring molecules
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Gap-Sue Kim, Sheng Hsien Lin, Yuichi Fujimura, and Hirobumi Mineo
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Physics ,Angular momentum ,Linear polarization ,Degenerate energy levels ,General Physics and Astronomy ,Interaction model ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Laser ,01 natural sciences ,0104 chemical sciences ,law.invention ,law ,Excited state ,Molecule ,Physical and Theoretical Chemistry ,Atomic physics ,0210 nano-technology ,Chirality (chemistry) - Abstract
Dynamic Stark-induced degenerate state (DSIDS) is essential to generate electronic coherent angular momentum to identify molecular chirality. We previously derived DSIDS for phenylalanine enantiomers in the independent interaction model (IIM), in which two linearly polarized nonresonant UV lasers independently interact with relevant two electronic excited states. We present a numerical method to derive DSIDS beyond IIM. Here, both lasers interact with both excited states, and laser input parameters are determined for DSIDS located at the center of the excited states. The numerical results reasonably agree with those calculated in the IIM, which elucidate the validity of DSIDS in the IIM.
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- 2020
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39. Quantum Design for Ultrafast Probing of Molecular Chirality through Enantiomer-Specific Coherent π-Electron Angular Momentum
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Hirobumi Mineo, Sheng Hsien Lin, Yuichi Fujimura, and Gap Sue Kim
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Angular momentum ,Circular dichroism ,Degenerate energy levels ,Electron ,010402 general chemistry ,01 natural sciences ,Molecular physics ,0104 chemical sciences ,Magnetic field ,Excited state ,0103 physical sciences ,General Materials Science ,Physical and Theoretical Chemistry ,010306 general physics ,Chirality (chemistry) ,Magnetic dipole - Abstract
Probing molecular chirality, right-handed or left-handed chiral molecules, is one of the central issues in chemistry and biochemistry. The conventional theory of optical activity measurements such as circular dichroism has been derived in the second-order processes involving electric and magnetic dipole moments, and the signals are very weak. We propose an efficient enantiomer-probing scenario for chiral aromatic ring molecules based on photoinduced coherent π-electron rotations. In our model, the resultant laser-induced currents themselves produce a strong magnetic field. The principle for probing molecular chirality is a utilization of dynamic Stark effects of two electronic excited states. These electronic states subjected to strong nonresonant linearly polarized UV lasers become degenerate to create enantiomer-specific electronic angular momentum. A pair of enantiomers of phenylalanine was taken as an example. Enantiomer-specific coherent magnetic fluxes on the order of a few teslas can be generated in several tens of femtoseconds. The direct detection of strong coherent magnetic fluxes could be carried out by time-resolved magnetic force microscopy experiments. The results provide important implications for the measurement of effective probing of chiral aromatic molecules.
- Published
- 2018
40. Theoretical Studies on Catalysis Mechanisms of Serum Paraoxonase 1 and Phosphotriesterase Diisopropyl Fluorophosphatase Suggest the Alteration of Substrate Preference from Paraoxonase to DFP
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Sheng Hsien Lin, Rong-Zhen Liao, Ling Yang, Hao Zhang, Chaoyuan Zhu, and Ying Ying Ma
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0301 basic medicine ,Protein Conformation ,Pharmaceutical Science ,01 natural sciences ,Analytical Chemistry ,Catalytic Domain ,Drug Discovery ,Diisopropyl-fluorophosphatase ,Mammals ,chemistry.chemical_classification ,Paraoxon ,biology ,Chemistry ,PON1 ,Phosphoric Triester Hydrolases ,hydrolysis ,Chemistry (miscellaneous) ,Thermodynamics ,Molecular Medicine ,medicine.drug ,enzyme evolution ,Stereochemistry ,010402 general chemistry ,Article ,Enzyme catalysis ,lcsh:QD241-441 ,Evolution, Molecular ,03 medical and health sciences ,Organophosphorus Compounds ,lcsh:Organic chemistry ,medicine ,Animals ,Humans ,Physical and Theoretical Chemistry ,Aryldialkylphosphatase ,Organic Chemistry ,Paraoxonase ,Substrate (chemistry) ,Hydrogen Bonding ,Enzyme assay ,0104 chemical sciences ,β-propeller protein ,030104 developmental biology ,Enzyme ,plasticity ,Mutation ,Biocatalysis ,biology.protein ,Calcium ,reaction mechanism - Abstract
The calcium-dependent &beta, propeller proteins mammalian serum paraoxonase 1 (PON1) and phosphotriesterase diisopropyl fluorophosphatase (DFPase) catalyze the hydrolysis of organophosphorus compounds and enhance hydrolysis of various nerve agents. In the present work, the phosphotriesterase activity development between PON1 and DFPase was investigated by using the hybrid density functional theory method B3LYP. Based on the active-site difference between PON1 and DFPase, both the wild type and the mutant (a water molecule replacing Asn270 in PON1) models were designed. The results indicated that the substitution of a water molecule for Asn270 in PON1 had little effect on the enzyme activity in kinetics, while being more efficient in thermodynamics, which is essential for DFP hydrolysis. Structure comparisons of evolutionarily related enzymes show that the mutation of Asn270 leads to the catalytic Ca2+ ion indirectly connecting the buried structural Ca2+ ion via hydrogen bonds in DFPase. It can reduce the plasticity of enzymatic structure, and possibly change the substrate preference from paraoxon to DFP, which implies an evolutionary transition from mono- to dinuclear catalytic centers. Our studies shed light on the investigation of enzyme catalysis mechanism from an evolutionary perspective.
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- 2018
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41. Induction of unidirectional π-electron rotations in low-symmetry aromatic ring molecules using two linearly polarized stationary lasers
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Hirobumi Mineo, Sheng Hsien Lin, Yoshiaki Teranishi, Masahiro Yamaki, Gap-Sue Kim, and Yuichi Fujimura
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Physics ,Angular momentum ,010304 chemical physics ,Degenerate energy levels ,General Physics and Astronomy ,Expectation value ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Schrödinger equation ,symbols.namesake ,Quantum mechanics ,Excited state ,0103 physical sciences ,symbols ,Rotating wave approximation ,Physical and Theoretical Chemistry ,Atomic physics ,Angular momentum operator ,Ground state - Abstract
A new laser-control scenario of unidirectional π-electron rotations in a low-symmetry aromatic ring molecule having no degenerate excited states is proposed. This scenario is based on dynamic Stark shifts of two relevant excited states using two linearly polarized stationary lasers. Each laser is set to selectively interact with one of the two electronic states, the lower and higher excited states are shifted up and down with the same rate, respectively, and the two excited states become degenerate at their midpoint. One of the four control parameters of the two lasers, i.e. two frequencies and two intensities, determines the values of all the other parameters. The direction of π-electron rotations, clockwise or counter-clockwise rotation, depends on the sign of the relative phase of the two lasers at the initial time. An analytical expression for the time-dependent expectation value of the rotational angular momentum operator is derived using the rotating wave approximation (RWA). The control scenario depends on the initial condition of the electronic states. The control scenario with the ground state as the initial condition was applied to toluene molecules. The derived time-dependent angular momentum consists of a train of unidirectional angular momentum pulses. The validity of the RWA was checked by numerically solving the time-dependent Schrödinger equation. The simulation results suggest an experimental realization of the induction of unidirectional π-electron rotations in low-symmetry aromatic ring molecules without using any intricate quantum-optimal control procedure. This may open up an effective generation method of ring currents and current-induced magnetic fields in biomolecules such as amino acids having aromatic ring molecules for searching their interactions.
- Published
- 2016
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42. Theoretical investigations of absorption and fluorescence spectra of protonated pyrene
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Sheng Hsien Lin and Chih-Hao Chin
- Subjects
Absorption spectroscopy ,Chemistry ,General Physics and Astronomy ,Time-dependent density functional theory ,010402 general chemistry ,01 natural sciences ,Molecular electronic transition ,0104 chemical sciences ,Vibronic coupling ,Absorption band ,Excited state ,0103 physical sciences ,Vibronic spectroscopy ,Physics::Chemical Physics ,Physical and Theoretical Chemistry ,Atomic physics ,Ground state ,010303 astronomy & astrophysics - Abstract
The equilibrium geometry and 75 vibrational normal-mode frequencies of the ground and first excited states of protonated pyrene isomers were calculated and characterized in the adiabatic representation by using the complete active space self-consistent field (CASSCF) method. Electronic absorption spectra of solid neon matrixes in the wavelength range 495-415 nm were determined by Maier et al. and they were analyzed using time-dependent density functional theory calculations (TDDFT). CASSCF calculations and absorption and emission spectra simulations by one-photon excitation equations were used to optimize the excited and ground state structures of protonated pyrene isomers. The absorption band was attributed to the S0 → S1 electronic transition in 1H-Py(+), and a band origin was used at 20580.96 cm(-1). The displaced harmonic oscillator approximation and Franck-Condon approximation were used to simulate the absorption spectrum of the (1) (1)A' ← X[combining tilde](1)A' transition of 1H-Py(+), and the main vibronic transitions were assigned for the first ππ* state. It shows that the vibronic structures were dominated by one of the eight active totally symmetric modes, with ν15 being the most crucial. This indicates that the electronic transition of the S1((1)A') state calculated in the adiabatic representation effectively includes a contribution from the adiabatic vibronic coupling through Franck-Condon factors perturbed by harmonic oscillators. The present method can adequately reproduce experimental absorption and fluorescence spectra of a gas phase.
- Published
- 2016
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43. The generation of stationary π-electron rotations in chiral aromatic ring molecules possessing non-degenerate excited states
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Yuichi Fujimura, Yoshiaki Teranishi, Masahiro Yamaki, Hiroki Nakamura, and Sheng Hsien Lin
- Subjects
Angular momentum ,Chemistry ,Degenerate energy levels ,General Physics and Astronomy ,010402 general chemistry ,01 natural sciences ,Molecular electronic transition ,0104 chemical sciences ,Total angular momentum quantum number ,Excited state ,0103 physical sciences ,Angular momentum coupling ,Angular momentum of light ,Orbital angular momentum of light ,Physical and Theoretical Chemistry ,Atomic physics ,010306 general physics - Abstract
The electron angular momentum is a fundamental quantity of high-symmetry aromatic ring molecules and finds many applications in chemistry such as molecular spectroscopy. The stationary angular momentum or unidirectional rotation of π electrons is generated by the excitation of a degenerated electronic excited state by a circularly-polarized photon. For low-symmetry aromatic ring molecules having non-degenerate states, such as chiral aromatic ring molecules, on the other hand, whether stationary angular momentum can be generated or not is uncertain and has not been clarified so far. We have found by both theoretical treatments and quantum optimal control (QOC) simulations that a stationary angular momentum can be generated even from a low-symmetry aromatic ring molecule. The generation mechanism can be explained in terms of the creation of a dressed-state, and the maximum angular momentum is generated by the dressed state with an equal contribution from the relevant two excited states in a simple three-electronic state model. The dressed state is formed by inducing selective nonresonant transitions between the ground and each excited state by two lasers with the same frequency but having different polarization directions. The selective excitation can be carried out by arranging each photon-polarization vector orthogonal to the electronic transition moment of the other transition. We have successfully analyzed the results of the QOC simulations of (P)-2,2'-biphenol of axial chirality in terms of the analytically determined optimal laser fields. The present findings may open up new types of chemical dynamics and spectroscopy by utilizing strong stationary ring currents and current-induced magnetic fields, which are created at a local site of large compounds such as biomolecules.
- Published
- 2016
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44. Theory of Triplet Excitation Transfer in the Donor-Oxygen-Acceptor System: Application to Cytochrome b 6 f
- Author
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Bruno Robert, E.G. Petrov, Leonas Valkunas, Sheng Hsien Lin, Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Laboratoire Bioénergétique Membranaire et Stress (LBMS), Département Biochimie, Biophysique et Biologie Structurale (B3S), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Models, Molecular ,Physics::Biological Physics ,Systems Biophysics ,Singlet oxygen ,Cytochrome b6f complex ,[SDV]Life Sciences [q-bio] ,Biophysics ,beta Carotene ,Acceptor ,3. Good health ,Oxygen ,chemistry.chemical_compound ,Electron transfer ,Kinetics ,Cytochrome b6f Complex ,chemistry ,Energy Transfer ,Superexchange ,Chemical physics ,Intramolecular force ,Singlet state ,Atomic physics ,Physics::Chemical Physics ,Excitation - Abstract
Theoretical consideration is presented of the triplet excitation dynamics in donor-acceptor systems in conditions where the transfer is mediated by an oxygen molecule. It is demonstrated that oxygen may be involved in both real and virtual intramolecular triplet-singlet conversions in the course of the process under consideration. Expressions describing a superexchange donor-acceptor coupling owing to a participation of the bridging twofold degenerate oxygen’s virtual singlet state are derived and the transfer kinetics including the sequential (hopping) and coherent (distant) routes are analyzed. Applicability of this theoretical description to the pigment-protein complex cytochrome b6f, by considering the triplet excitation transfer from the chlorophyll a molecule to distant β-carotene, is discussed.
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- 2015
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45. Anharmonic Effect of the Unimolecular Dissociation of HFCO and DFCO
- Author
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Wenwen Xia, Ying Shao, Qian Li, Weiwen Wang, Sheng Hsien Lin, Jingjun Zhong, and Li Yao
- Subjects
RRKM theory ,Reaction rate constant ,Chemistry ,Computational chemistry ,Kinetic isotope effect ,Anharmonicity ,Thermodynamics ,General Chemistry ,Physics::Chemical Physics ,Dissociation (chemistry) - Abstract
The unimolecular reactions of HFCO and DFCO have been studied by RRKM theory. The harmonic and anharmonic rate constants of the HFCO and DFCO decompositions have been calculated. The harmonic and anharmonic rate constants increase with the increasing temperatures and total energies both in the canonical and microcanonical systems. The comparison shows that the rate constants of DFCO decomposition are lower than that of the HFCO decomposition. The anharmonic effect and isotope effect have also been investigated. It has been found that the anharmonic effect and isotope effect are not significant either in the canonical or microcanonical system for all the reactions.
- Published
- 2015
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46. Intersystem Crossing Pathway in Quinoline–Pyrazole Isomerism: A Time-Dependent Density Functional Theory Study on Excited-State Intramolecular Proton Transfer
- Author
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Chaoyuan Zhu, Sheng Hsien Lin, Sheng Cheng Lan, and Yu Hui Liu
- Subjects
Chemistry ,Time-dependent density functional theory ,Photochemistry ,Potential energy ,Fluorescence ,Dark state ,Intersystem crossing ,Isomerism ,Models, Chemical ,Intramolecular force ,Excited state ,Quinolines ,Pyrazoles ,Density functional theory ,Singlet state ,Protons ,Physical and Theoretical Chemistry - Abstract
The dynamics of the excited-state intramolecular proton-transfer (ESIPT) reaction of quinoline-pyrazole (QP) isomers, designated as QP-I and QP-II, has been investigated by means of time-dependent density functional theory (TDDFT). A lower barrier has been found in the potential energy curve for the lowest singlet excited state (S1) along the proton-transfer coordinate of QP-II compared with that of QP-I; however, this is at variance with a recent experimental report [J. Phys. Chem. A 2010, 114, 7886-7891], in which the authors proposed that the ESIPT reaction would only proceed in QP-I due to the absence of a PT emission for QP-II. Therefore, several deactivating pathways have been investigated to determine whether fluorescence quenching occurs in the PT form of QP-II (PT-II). The S1 state of PT-II has nπ* character, which is a well-known dark state. Moreover, the energy gap between the S1 and T2 states is only 0.29 eV, implying that an intersystem crossing (ISC) process would occur rapidly following the ESIPT reaction. Therefore, it is demonstrated that the ESIPT could successfully proceed in QP-II and that the PT emission would be quenched by the ISC process.
- Published
- 2015
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47. A Theoretical Investigation of Surface‐enhanced Sum‐frequency Generation
- Author
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S. Y. Chen, A. H. H. Chang, Chi-Hsiung Lin, Y. L. Yeh, Sheng Hsien Lin, R. X. He, and J. Lei
- Subjects
Surface (mathematics) ,Sum-frequency generation ,Chemistry ,Analytical chemistry ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Molecular physics ,0104 chemical sciences ,symbols.namesake ,Transformation (function) ,Polarizability ,Physics::Atomic and Molecular Clusters ,symbols ,Vibrational resonance ,Physics::Chemical Physics ,0210 nano-technology ,Raman scattering - Abstract
Following the surface enhanced Raman scattering (SERS), we shall investigate the possibility of observing surface-enhanced sum-frequency generation (SESFG), which refers to the transformation of ordinary vibrational SFG (i.e. singly resonant) into SESFG. Two mechanisms of SESFG will be studied; one is due to the transformation of singly-resonant vibrational SFG into doubly resonant vibrational SFG (that is, both vibrationally resonant and Raman-scattering resonant) and the other is due to the enhancement of the polarizability in addition to the original vibrational resonance in vibrational SFG.
- Published
- 2015
- Full Text
- View/download PDF
48. Calculation of anharmonic effects for the unimolecular dissociation of CH3OOH and its deuterated species CD3OOD using the Rice–Ramsperger–Kassel–Marcus theory
- Author
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Qian Li, Li Yao, and Sheng Hsien Lin
- Subjects
RRKM theory ,Reaction rate constant ,Deuterium ,Computational chemistry ,Chemistry ,Organic Chemistry ,Anharmonicity ,Thermodynamics ,General Chemistry ,Catalysis ,Dissociation (chemistry) ,Marcus theory - Abstract
Anharmonic and harmonic rate constants for the unimolecular dissociation of CH3OOH and CD3OOD were calculated using the Rice–Ramsperger–Kassel–Marcus (RRKM) theory at the MP2/6-311++G(3df,3pd) level of theory. The anharmonic effect of the reactions was investigated. Comparison of results for the decompositions of CH3OOH and CD3OOD shows that the direct bond dissociation channel, CH3(D3) O + OH (D), is the most dominant reaction. The anharmonic effect plays an important role in the unimolecular dissociation of both CH3OOH and CD3OOD. For channels CH3(D3) O + OH (D) and CH3(D3) + H (D) O2, the anharmonic effect of the unimolecular dissociation of CD3OOD is more pronounced than that of the unimolecular dissociation of CH3OOH. For channel H2(D2) CO + H2(D2) O, the anharmonic effect of the unimolecular dissociation of CH3OOH is more pronounced than that of the unimolecular dissociation of CD3OOD. The isotope effect is more distinct in the anharmonic oscillator model.
- Published
- 2015
- Full Text
- View/download PDF
49. Calculation of anharmonic effects in the unimolecular dissociation of M2+(H2O)2(M = Be, Mg, and Ca)
- Author
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Wenwen Xia, Li Yao, Sheng Hsien Lin, and Qian Li
- Subjects
Reaction rate constant ,Chemistry ,Anharmonicity ,Biophysics ,Physical chemistry ,Physical and Theoretical Chemistry ,Condensed Matter Physics ,Molecular Biology ,Dissociation (chemistry) - Abstract
The anharmonic and harmonic rate constants of the unimolecular dissociation of M2+(H2O)2 (M = Be, Mg, and Ca) were calculated using the Rice–Ramsperger–Kassel–Marcus theory. The anharmonic effects of the reactions were investigated. The results show that the energy barrier of the dissociation of Be2+(H2O)2 is 68.47 kcal/mol, and the anharmonic (T4000K = 4.28×108 s−1) and harmonic (T4000K = 4.22×108 s−1) rate constants were close in value in both the canonical and microcanonical systems. The energy barriers of the two steps for the dissociation, Mg2+(H2O)2 → MgOH++H3O+, were 37.41 and 11.39 kcal/mol, and those for the dissociation, Ca2+(H2O)2 → CaOH++H3O+, were 21.15 and 26.42 kcal/mol. The anharmonic effect of the two reactions is significant and cannot be neglected in both the canonical and microcanonical systems. The comparison also shows that the rate constants of the dissociation of Ca2+(H2O)2 have the maximum values, while those of Be2+(H2O)2 have the minimum values in the three reactions; however, t...
- Published
- 2015
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50. Anharmonic Effect of the Unimolecular Isomerization/Decomposition of Benzyne
- Author
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Sheng Hsien Lin, Qian Li, and Li Yao
- Subjects
RRKM theory ,Reaction rate constant ,Chemistry ,Computational chemistry ,Anharmonicity ,Thermodynamics ,Harmonic (mathematics) ,General Chemistry ,Isomerization ,Aryne ,Decomposition ,Basis set - Abstract
The anharmonic and harmonic rate constants were calculated for the unimolecular decomposition of o-benzyne, the isomerization of o-benzyne to m-benzyne, the isomerization of m-benzyne to p-benzyne and unimolecular decomposition of p-benzyne by using the Rice–Ramsperger–Kassel–Marcus (RRKM) theory respectively, in the canonical and microcanonical systems. The geometry and the vibrational frequencies were calculated by MP2 and B3LYP methods with 6-311G(d,p) basis set and the barrier energies were corrected using CBS-QB3 theory. The anharmonic effect on the reactions was also examined. Comparison of results for the decompositions of benzyne indicate that both in microcanonical and canonical cases, the anharmonic effect on the decomposition of the o-C6H4 and p-C6H4 are significant, while the anharmonic effect on the two isomerizations are not pronounced.
- Published
- 2015
- Full Text
- View/download PDF
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