Search

The concept of dominance is frequently used to describe changes in rapidly reconfiguring ecosystems, but the definition of dominance can vary widely among studies. Using coral reefs as a model, we use extensive benthic composition data to explore how variability in applying dominance concepts can shape perceptions. We reveal that coral dominance is sensitive to the exclusion of key algal groups and the categorization of other benthic groups, with ramifications for detecting an ecosystem phase shift. For example, ignoring algal turf inflates the dominance of hard and soft corals in the benthic habitats underpinning reef ecosystems. We need a consensus on how dominance concepts are applied so that we can build a more comprehensive understanding of ecosystem shifts across a broad range of aquatic and terrestrial settings. For reefs, we highlight the benefits of comprehensive and inclusive surveys for evaluating and managing the altered ecosystem states that are emerging in the Anthropocene.

Alteration of benthic reef habitat after coral bleaching and mortality induces changes in fish assemblages, with implications for fisheries. Our understanding of climate impacts to coral reef fisheries is largely based on fish abundance and biomass. The rates at which biomass is produced and replenished (productivity and turnover) are also important to sustaining fisheries, yet the responses of these metrics following bleaching are largely unknown. Here, we examine changes in fish productivity and turnover after mass coral bleaching events in Seychelles, on reefs that were recovering to coral-dominated habitats and those that shifted to macroalgae-dominated regimes. Productivity of fish assemblages increased on all recovering reefs, particularly on fished reefs resulting in levels similar to protected reefs 19 years after bleaching. Herbivore-detritivores, such as scraping and excavating parrotfish, appeared to drive biomass production through increased abundance on recovering reefs. Productivity on regime-shifted reefs remained stable at 1994 levels in fished areas, with increases observed on protected reefs. Large increases in browser productivity (particularly on protected reefs), combined with increases for invertivores, maintained post-bleaching productivity on macroalgal reefs. For all diet groups, net turnover was generally higher on fished regime-shifted reefs than on recovering reefs, suggesting fish biomass is more readily replenished on macroalgal reefs. Reef structural complexity was a positive predictor of productivity for all diet groups. These findings indicate that post-bleaching reef fish productivity is strongly influenced by benthic recovery trajectories, and demonstrates the importance of herbivore and invertivore species in sustaining small-scale inshore fisheries following climatic disturbances.

Nearly a billion people depend on tropical seascapes. The need to ensure sustainable use of these vital areas is recognised, as one of 17 policy commitments made by world leaders, in Sustainable Development Goal (SDG) 14 (‘Life below Water’) of the United Nations. SDG 14 seeks to secure marine sustainability by 2030. In a time of increasing social-ecological unpredictability and risk, scientists and policymakers working towards SDG 14 in the Asia–Pacific region need to know: (1) How are seascapes changing? (2) What can global society do about these changes? and (3) How can science and society together achieve sustainable seascape futures? Through a horizon scan, we identified nine emerging research priorities that clarify potential research contributions to marine sustainability in locations with high coral reef abundance. They include research on seascape geological and biological evolution and adaptation; elucidating drivers and mechanisms of change; understanding how seascape functions and services are produced, and how people depend on them; costs, benefits, and trade-offs to people in changing seascapes; improving seascape technologies and practices; learning to govern and manage seascapes for all; sustainable use, justice, and human well-being; bridging communities and epistemologies for innovative, equitable, and scale-crossing solutions; and informing resilient seascape futures through modelling and synthesis. Researchers can contribute to the sustainability of tropical seascapes by co-developing transdisciplinary understandings of people and ecosystems, emphasising the importance of equity and justice, and improving knowledge of key cross-scale and cross-level processes, feedbacks, and thresholds.

Summary Climate change is transforming coral reefs, threatening supply of essential dietary micronutrients from small-scale fisheries to tropical coastal communities. Yet the nutritional value of reef fisheries and climate impacts on micronutrient availability remain unclear, hindering efforts to sustain food and nutrition security. Here, we measure nutrient content in coral reef fishes in Seychelles and show that reef fish are important sources of selenium and zinc and contain levels of calcium, iron, and omega-3 fatty acids comparable with other animal-source foods. Using experimental fishing, we demonstrate that iron and zinc are enriched in fishes caught on regime-shifted macroalgal habitats, whereas selenium and omega-3 varied among species. We find substantial increases in nutrients available to fisheries over two decades following coral bleaching, particularly for iron and zinc after macroalgal regime shifts. Our findings indicate that, if managed sustainably, coral reef fisheries could remain important micronutrient sources along tropical coastlines despite escalating climate impacts., Highlights • Coral reef fishes are important sources of essential dietary nutrients • Nutrients available to fisheries increased after mass coral bleaching • Iron and zinc were higher in reef fishes caught on macroalgal habitats • Coral reefs can remain key sources of nutritious food despite climate impacts, Science for society Tropical small-scale fisheries supply nutritious and affordable seafood to hundreds of millions of people, including catches from coral reefs that are vulnerable to marine heatwaves. Climate changes therefore threaten seafood supply in places where food insecurity is most prevalent, but what is the nutrient value of climate-impacted coral reefs? We analyzed nutrient content of 43 tropical reef fish species in Seychelles and found that coral reef fish contain similar levels of iron, selenium, and zinc as chicken, pork, and beef and higher levels of calcium and omega-3 fatty acids. By integrating nutrient data with fish surveys collected before and after mass coral bleaching, we show that high post-bleaching fish biomass led to greater nutrient supply for fisheries, particularly for iron and zinc. Sustainable management of reef fisheries can therefore continue to support tropical food and nutrition security, despite climate impacts to reef ecosystems., Marine heatwaves are transforming coral reefs, yet the nutritional value of reef fisheries and climate impacts on micronutrient availability remain unclear. We show that reef fish contain levels of calcium, iron, selenium, zinc, and omega-3 fatty acids equivalent to or greater than other animal-source foods. Using monitoring data from Seychelles, we also find nutrient availability to fisheries increased after mass coral bleaching, due to greater herbivore productivity. Sustainably managed reef fisheries can support food and nutrition security along climate-impacted tropical coastlines.

Crown-of-thorns sea stars (Acanthaster sp.) are among the most studied coral reef organisms, owing to their propensity to undergo major population irruptions, which contribute to significant coral loss and reef degradation throughout the Indo-Pacific. However, there are still important knowledge gaps pertaining to the biology, ecology, and management of Acanthaster sp. Renewed efforts to advance understanding and management of Pacific crown-of-thorns sea stars (Acanthaster sp.) on Australia’s Great Barrier Reef require explicit consideration of relevant and tractable knowledge gaps. Drawing on established horizon scanning methodologies, this study identified contemporary knowledge gaps by asking active and/or established crown-of-thorns sea star researchers to pose critical research questions that they believe should be addressed to improve the understanding and management of crown-of-thorns sea stars on the Great Barrier Reef. A total of 38 participants proposed 246 independent research questions, organized into 7 themes: feeding ecology, demography, distribution and abundance, predation, settlement, management, and environmental change. Questions were further assigned to 48 specific topics nested within the 7 themes. During this process, redundant questions were removed, which reduced the total number of distinct research questions to 172. Research questions posed were mostly related to themes of demography (46 questions) and management (48 questions). The dominant topics, meanwhile, were the incidence of population irruptions (16 questions), feeding ecology of larval sea stars (15 questions), effects of elevated water temperature on crown-of-thorns sea stars (13 questions), and predation on juveniles (12 questions). While the breadth of questions suggests that there is considerable research needed to improve understanding and management of crown-of-thorns sea stars on the Great Barrier Reef, the predominance of certain themes and topics suggests a major focus for new research while also providing a roadmap to guide future research efforts.

Sustainably managing fisheries requires regular and reliable evaluation of stock status. However, most multispecies reef fisheries around the globe tend to be data-poor and lack research and monitoring capacity (e.g., long-term fishery data), preventing the estimation of sustainable reference points against which stocks can be assessed. Here, combining fish biomass data for more than 2000 coral reefs with catch estimates from 99 jurisdictions, we estimate site-specific sustainable reference points for coral reef fisheries and use these to assess the status of coral reef fish stocks. We reveal that more than half of jurisdictions with available information have stocks of conservation concern, having failed at least one fisheries sustainability benchmark. We quantify the trade-offs between biodiversity, mean fish length, and ecosystem functions relative to key benchmarks and highlight the ecological benefits of increasing sustainability. Our approach yields multispecies sustainable reference points for coral reef fisheries using environmental conditions, a promising means for enhancing the sustainability of the world’s coral reef fisheries.TeaserA global assessment of the sustainability of multispecies reef fisheries indicates that more than half of jurisdictions have failed at least one of two key sustainability benchmarks.

Anthropogenic impacts at isolated and inaccessible reefs are often minimal, offering rare opportunities to observe fish assemblages in a relatively undisturbed state. The remote Rowley Shoals are regarded as one of the healthiest reef systems in the Indian Ocean with demonstrated resilience to natural disturbance, no permanent human population nearby, low visitation rates, and large protected areas where fishing prohibitions are enforced. We used baited remote underwater video systems (BRUVS) to quantify fish assemblages and the relative abundance of regionally fished species within the lagoon, on the slope and in the mesophotic habitat at the Rowley Shoals at three times spanning 14 years and compared abundances of regionally fished species and the length distributions of predatory species to other isolated reefs in the northeast Indian Ocean. Fish assemblage composition and the relative abundance of regionally fished species were remarkably stable through time. We recorded high abundances of regionally fished species relative to other isolated reefs, including globally threatened humphead Maori wrasse (Cheilinus undulatus) and bumphead parrotfish (Bolbometopon muricatum). Length distributions of fish differed among habitats at the Rowley Shoals, suggesting differences in ontogenetic shifts among species. The Cocos (Keeling) Islands typically had larger‐bodied predatory species than at the Rowley Shoals. Differences in geomorphology, lagoonal habitats, and fishing history likely contribute to the differences among remote reefs. Rowley Shoals is a rare example of a reef system demonstrating ecological stability in reef fish assemblages during a time of unprecedented degradation of coral reefs., Fish assemblage composition and the relative abundance of regionally fished species were remarkably stable through time at the Rowley Shoals. We recorded high abundances of regionally fished species relative to other isolated reefs, including globally threatened humphead Maori wrasse (Cheilinus undulatus) and bumphead parrotfish (Bolbometopon muricatum).

Mobile consumers are key vectors of cross-ecosystem nutrients, yet have experienced population declines which threaten their ability to fill this role. Despite their importance and vulnerability, there is little information on how consumer biodiversity, in addition to biomass, influences the magnitude of nutrient subsidies. Here, we show that both biomass and diversity of seabirds enhanced the provisioning of nutrients across tropical islands and coral reefs, but their relative influence varied across systems. Seabird biomass was particularly important for terrestrial and near-shore subsidies and enhancing fish biomass, while seabird diversity was associated with nutrient subsidies further offshore. The positive effects of diversity were likely driven by high functional complementarity among seabird species in traits related to nutrient storage and provisioning. However, introduced rats and non-native vegetation reduced seabird biomass and diversity, with rats having a stronger effect on biomass and vegetation having a stronger effect on diversity. Accordingly, the restoration of cross-ecosystem nutrient flows provided by seabirds will likely be most successful when both stressors are removed, thus protecting both high biomass and diversity. Recognizing the importance of mobile consumer diversity and biomass, and their underlying drivers, is a necessary step to conserving these species and the ecosystem functions they provide.

Increasing degradation of coral reef ecosystems and specifically, loss of corals is causing significant and widespread declines in the abundance of coral reef fishes, but the proximate cause(s) of these declines are largely unknown. Here, we examine specific responses to host coral mortality for three species of coral-dwelling damselfishes (Dascyllus aruanus, D. reticulatus, and Pomacentrus moluccensis), explicitly testing whether these fishes can successfully move and recolonize nearby coral hosts. Responses of fishes to localized coral loss was studied during population irruptions of coral feeding crown-of-thorns starfish, where starfish consumed 29 (34%) out of 85 coral colonies, of which 25 (86%) were occupied by coral-dwelling damselfishes. Damselfishes were not tagged or individually recognizable, but changes in the colonization of different coral hosts was assessed by carefully assessing the number and size of fishes on every available coral colony. Most damselfishes (> 90%) vacated dead coral hosts within 5 days, and either disappeared entirely (presumed dead) or relocated to nearby coral hosts. Displaced fishes only ever colonized corals already occupied by other coral-dwelling damselfishes (mostly conspecifics) and colonization success was strongly size-dependent. Despite movement of damselfishes to surviving corals, the local abundance of coral-dependent damselfishes declined in approximate accordance with the proportional loss of coral habitat. These results suggest that even if alternative coral hosts are locally abundant, there are significant biological constraints on movement of coral-dwelling damselfishes and recolonization of alternative coral habitats, such that localized persistence of habitat patches during moderate or patchy disturbances do not necessarily provide resilience against overall habitat loss.

Este artículo contiene 17 páginas, 8 figuras, 5 tablas., Complex histories of chronic and acute sea surface temperature (SST) stresses are expected to trigger taxon- and location-specific responses that will ultimately lead to novel coral communities. The 2016 El Niño-Southern Oscillation provided an opportunity to examine largescale and recent environmental histories on emerging patterns in 226 coral communities distributed across 12 countries from East Africa to Fiji. Six main coral communities were identified that largely varied across a gradient of Acropora to massive Porites dominance. Bleaching intensity was taxon-specific and was associated with complex interactions among the 20 environmental variables that we examined. Coral community structure was better aligned with the historical temperature patterns between 1985 and 2015 than the 2016 extreme temperature event. Additionally, bleaching responses observed during 2016 differed from historical reports during past warm years. Consequently, coral communities present in 2016 are likely to have been reorganized by both long-term community change and acclimation mechanisms. For example, less disturbed sites with cooler baseline temperatures, higher mean historical SST background variability, and infrequent extreme warm temperature stresses were associated with Acropora-dominated communities, while more disturbed sites with lower historical SST background variability and frequent acute warm stress were dominated by stress-resistant massive Porites corals. Overall, the combination of taxon-specific responses, community-level reorganization over time, geographic variation, and multiple environmental stressors suggest complex responses and a diversity of future coral communities that can help contextualize management priorities and activities., T.R.M. and N.A.M. received support from the John D. and Catherine T. MacArthur Foundation, and the Sustainable Poverty Alleviation from Coastal Ecosystem Services (SPACES) project, number NE-K010484-1. E.S.D. was supported by an NSERC Banting Postdoctoral Fellowship and the John D. and Catherine T. MacArthur Foundation. Data collection in the Solomon Islands was supported by the Wallace Research Foundation, and the Waitt Foundation supported data collection in Fiji. Maldives data collection was supported by IUCN and USAID. M.M.M.G. received support from the French National Research Agency under the STORISK project (no. ANR-15-CE03- 0003). Data collection in Zanzibar was partly supported by the NORHED project coordinated by the State University of Zanzibar (SUZA). The Tiffany & Co. Foundation and the John D. and Catherine T. MacArthur Foundation supported data collection at sites in the western Indian Ocean. V.J.P. received support from the DST-INSPIRE Faculty Programme, and Z. Tyabji and S. Chandrasekhar assisted V.J.P. with data collection in the Andaman Islands. R.A. received funding support from the Pew Marine Fellowship and an Intramural Project from the Spanish National Research Council (CSIC-201330E062). S.A.K. was funded by the VILLUM Foundation (grant no. 10114). A.T.H. received funding from the Carnegie Corporation of New York. Indonesia data collection was supported by John D. and Catherine T. MacArthur Foundation and Margaret A. Cargill Philanthropies. The following people assisted with data collection: A. Baird, A. Halford, S. Keith, C. Miternique, E. Montocchio, C. Muhando, J. Ndagala, and N. Summers.

Positive relationships between biodiversity and ecosystem functioning (BEF) highlight the importance of conserving biodiversity to maintain key ecosystem functions and associated services. Although natural systems are rapidly losing biodiversity due to numerous human-caused stressors, our understanding of how multiple stressors influence BEF relationships comes largely from small, experimental studies. Here, using remote assemblages of coral reef fishes, we demonstrate strong, non-saturating relationships of biodiversity with two ecosystem functions: biomass and productivity. These positive relationships were robust both to an extreme heatwave that triggered coral bleaching and to invasive rats which disrupt nutrient subsidies from native seabirds. Despite having only minor effects on BEF relationships, both stressors still decreased ecosystem functioning via other pathways. The extreme heatwave reduced biodiversity, which, due to the strong BEF relationships, ultimately diminished both ecosystem functions. Conversely, the loss of cross-system nutrient subsidies directly decreased biomass. These results demonstrate multiple ways by which human-caused stressors can reduce ecosystem functioning, despite robust BEF relationships, in natural high-diversity assemblages. © 2020, The Author(s), under exclusive licence to Springer Nature Limited.

There are a wide range of Scleractinian corals that are collected for the global reef aquarium market, often from non-reefal environments. The sustainability of coral harvesting is potentially threatened by increasing anthropogenic disturbances and climate change, though it is unknown to what extent many commonly harvested corals are susceptible to environmental change, or actually bleach during marine heatwaves. In this study, we experimentally tested the temperature sensitivity and bleaching susceptibility of six coral species (Homophyllia australis, Micromussa lordhowensis, Catalaphyllia jardinei, Trachyphyllia geoffroyi, Duncanopsammia axifuga, and Euphyllia glabrescens), which are important components of the aquarium coral fisheries across northern Australia, in Western Australia, the Northern Territory, and/or Queensland. Interspecific differences were evident in the temperature sensitivity and bleaching susceptibility among the study species. Homophyllia australis, and M. lordhowensis were found to be particularly susceptible to elevated temperatures, whereby all corals subjected to elevated temperatures died within the course of the experimental treatment (75 d). Catalaphyllia jardinei and E. glabrescens also exhibited significant increases in mortality when exposed to elevated temperatures, though some of the corals did survive, and C. jardinei mostly died only after exposure to elevated temperatures. The other species (T. geoffroyi and D. axifuga) exhibited marked bleaching when exposed to elevated temperatures, but mortality of these corals was similar to that of conspecifics held at ambient temperatures. This study highlights the potential for environmental change to impact the sustainability and viability of Australian coral harvest fisheries. More importantly, this study highlights the need for specific and targeted in situ monitoring for important stocks of coral fishery target species, to assess their vulnerability to fishery and fishery-independent effects.

Coral reef ecosystems are among the first to fundamentally change in structure due to climate change, which leads to questioning of whether decades of knowledge regarding reef management is still applicable. Here we assess ecological responses to no-take marine reserves over two decades, spanning a major climate-driven coral bleaching event. Pre-bleaching reserve responses were consistent with a large literature, with higher coral cover, more species of fish, and greater fish biomass, particularly of upper trophic levels. However, in the 16 years following coral mortality, reserve effects were absent for the reef benthos, and greatly diminished for fish species richness. Positive fish biomass effects persisted, but the groups of fish benefiting from marine reserves profoundly changed, with low trophic level herbivores dominating the responses. These findings highlight that while marine reserves still have important roles on coral reefs in the face of climate change, the species and functional groups they benefit will be substantially altered., It is unclear whether rapid climate change will alter the effectiveness of marine reserves. Here Graham et al. use a 20-year time-series from the Seychelles to show that marine reserves may not prevent climate-driven shifts in community composition, and that ecological responses to reserves are substantially altered.

Macroalgal-dominated reefs are a prominent component of tropical seascapes providing food and shelter for many species whilst subsidising secondary productivity in coastal ecosystems. Monitoring and managing macroalgae require an understanding of key processes that alter these assemblages, especially at the local scale. Here we consider how sediment depth/cover and abundance of the urchin Tripneustes gratilla influence variation in community composition and physical structure of macroalgal patches within the World Heritage listed Ningaloo Reef, Western Australia. Our study found high urchin densities in sites with lower sediment cover and depth and that sediments, urchin abundance, and seascape position explained 32% of the spatial variation in macroalgal community composition with a greater occurrence of Sargassopsis, Caulerpa, Sirophysalis and Hormophysa in the lagoon where sediment cover/depth was high. Canopy height and cover of canopy-forming macroalgae were also greater where sediments were high and urchin abundance low. Macroalgal genera with a strong and robust thallus were found in sediment depths up to 6 cm as opposed to those with softer, fragile thalli that were found in sediments

Scleractinian corals are engineers on coral reefs that provide both structural complexity as habitat and sustenance for other reef-associated organisms via the release of organic and inorganic matter. However, coral reefs are facing multiple pressures from climate change and other stressors, which can result in mass coral bleaching and mortality events. Mass mortality of corals results in enhanced release of organic matter, which can cause significant alterations to reef biochemical and recycling processes. There is little known about how long these nutrients are retained within the system, for instance, within the tissues of other benthic organisms. We investigated changes in nitrogen isotopic signatures (δ15N) of macroalgal tissues (a) ~ 1 year after a bleaching event in the Seychelles and (b) ~ 3 months after the peak of a bleaching event in Mo’orea, French Polynesia. In the Seychelles, there was a strong association between absolute loss in both total coral cover and branching coral cover and absolute increase in macroalgal δ15N between 2014 and 2017 (adjusted r2 = 0.79, p = 0.004 and adjusted r2 = 0.86, p = 0.002, respectively). In Mo’orea, a short-term transplant experiment found a significant increase in δ15N in Sargassum mangarevense after specimens were deployed on a reef with high coral mortality for ~ 3 weeks (p

Seagrass fishes perform key ecological roles and are a critical component of many of the world’s fisheries. A sound understanding of seagrass fish communities, based on robust methods, is therefore integral for their successful environmental management and conservation. Here we quantitatively compare taxa and size class of seagrass fish assemblages collected using; baited and unbaited remote underwater video (BRUV, URUV), diver operated video (DOV), underwater visual census (UVC) and trawling. We assess comparisons of these methods in terms of biodiversity indicators and power to detect change. All five methods were deployed in coastal embayments dominated by Posidonia spp. and within three marine parks along the south-western coast of Western Australia. Fish assemblages recorded using the different methods separated into two distinct groups; those dominated by smaller and less motile species, that are typically present beneath the canopy among seagrass leaves; and those dominated by larger, faster swimming species present above the seagrass canopy. Trawling provided the most effective method for assessing species within the canopy, including those of conservation concern. Conversely, BRUV followed by URUV recorded the greatest number of individuals, successfully detecting the larger supra-canopy and highly motile species typically omitted by trawling. Both trawl and BRUV methods had a higher power to detect change in species richness of seagrass fishes compared to other methods, even though each method recorded different components of the fish assemblage. Fish assemblages recorded using UVC detected both inter and supra-canopy species, but fish abundances recorded by this method were low compared to trawl and BRUV surveys, resulting in reduced power to detect change in richness. DOV was a comparatively less effective method, recording few fish, as well as low richness and diversity values. The combination of trawling and stationary video techniques, particularly BRUV, provided a two-method combination able to holistically measure commonly used indicators of fish assemblage composition in seagrass habitat. These results demonstrate that careful consideration of the methodology is essential when assessing ichthyofauna in seagrass habitat, particularly when only a single method can be employed. As the extent of methodological influence on recording fish assemblages also varied among the three survey areas, geographical differences in the structure of fish and seagrass communities should be considered when selecting an appropriate sampling method.

International audience; Few studies assess the effects of recreational fishing in isolation from commercial fishing. We used meta-analysis to synthesise 4444 samples from 30 years (1987–2017) of fish surveys inside and outside a large network of highly protected reserves in the Ningaloo Marine Park, Western Australia, where the major fishing activity is recreational. Data were collected by different agencies, using varied survey designs and sampling methods. We contrasted the relative abundance and biomass of target and non-target fish groups between fished and reserve locations. We considered the influence of, and possible interactions between, seven additional variables: age and size of reserve, one of two reserve network configurations, reef habitat type, recreational fishing activity, shore-based fishing regulations and survey method. Taxa responded differently: the abundance and biomass inside reserves relative to outside was higher for targeted lethrinids, while other targeted (and non-targeted) fish groups were indistinguishable. Reef habitat was important for explaining lethrinid response to protection, and this factor interacted with reserve size, such that larger reserves were demonstrably more effective in the back reef and lagoon habitats. There was little evidence of changes in relative abundance and biomass of fishes with reserve age, or after rezoning and expansion of the reserve network. Our study demonstrates the complexities in quantifying fishing effects, highlighting some of the key factors and interactions that likely underlie the varied results in reserve assessments that should be considered in future reserve design and assessment.

Repeated bouts of coral bleaching threaten the long-term persistence of coral reefs and associated communities. Here, we document the short- and long-term impacts of heatwave events on coral and fish assemblages, based on regular surveys of 18 reefs of the granitic islands of Seychelles over 23 yr. Extreme heat events in 1998 and 2016 led to bleaching-associated declines in coral cover, whilst between these years there was an interim period of coral recovery on some reefs. Coral decline and recovery were primarily due to changes in the cover of branching coral, particularly those from the families Acroporidae and Pocilloporidae. Surveys during the 2016 bleaching found that 95% of the 468 Acropora and Pocillopora colonies observed were either bleached or recently dead. The extent of bleaching and subsequent mortality were best explained by a priori assessments of community susceptibility to heat stress. One year later (2017), coral cover had fallen by 70% and average coverage across the 18 reefs was at 6%, similar to levels recorded in 2005, 7 yr after the 1998 bleaching. Decline in coral following the 2016 bleaching coincided with reduced abundance of fish < 11 cm TL, particularly corallivores, invertivores and mixed diet feeders. These changes are likely to foreshadow more widespread loss once the habitat structure erodes. Accordingly, 7 yr after the 1998 bleaching, when coral skeletons and reef structure had collapsed on some reefs, abundance of both large- and small-bodied fish had declined. We show that fluctuation in the cover of branching coral is positively associated with changes in the abundance of small-bodied fish which contribute to ecological processes and high diversity, suggesting branching corals are a keystone structure. Increased frequency of bleaching threatens the capacity of branching corals to fully recover after disturbances, reducing the amplitude of boom bust cycles of these corals and the keystone habitat structure they provide reef fish.

Western Australia’s coral reefs have largely escaped the chronic pressures affecting other reefs around the world, but are regularly affected by seasonal storms and cyclones, and increasingly by heat stress and coral bleaching. Reef systems north of 18°S have been impacted by heat stress and coral bleaching during strong El Nino phases and those further south during strong La Nina phases. Cumulative heat stress and the extent of bleaching throughout the northern reefs in 2016 were higher than at any other time on record. To assess the changing regime of disturbance to reef systems across Western Australia (WA), we linked their site-specific exposure to damaging waves and heat stress since 1990 with mean changes in coral cover. Since 2010, there has been a noticeable increase in heat stress and coral bleaching across WA. Over half the reef systems have been severely impacted by coral bleaching since 2010, which was further compounded by cyclones at some reefs. For most (75%) reef systems with long-term data (5–26 yrs), mean coral cover is currently at (or near) the lowest on record and a full recovery is unlikely if disturbances continue to intensify with climate change. However, some reefs have not yet experienced severe bleaching and their coral cover has remained relatively stable or increased in recent years. Additionally, within all reef systems the condition of communities and their exposure to disturbances varied spatially. Identifying the communities least susceptible to future disturbances and linking them through networks of protected areas, based on patterns of larval connectivity, are important research and management priorities in coming years while the causes of climate change are addressed.

Thermally induced mass coral bleaching is globally responsible for major losses of coral cover. Coral recovery from mass coral disturbances like the 2016 bleaching event hinges on successful recruitment of new coral colonies to the existing population. Juvenile corals as a life history stage represent survival and growth of new recruits. As such, habitat preferences of juvenile corals and how environmental parameters interact to drive coral recovery following a mass bleaching disturbance are important research areas. To expand our knowledge on this topic, we compared juvenile coral densities from before the 2016 bleaching event with those after the disturbance and identified abiotic and biotic characteristics of 21 reefs in the inner Seychelles that predict juvenile coral densities. Our results show that following the 2016 bleaching event, juvenile coral densities were significantly reduced by about 70%, with a particularly large decline in juvenile Acropora. Macroalgae present a large obstacle to survival of juvenile corals in a post-bleaching setting, but their influence varies as a function of herbivore biomass, reef structure, and reef type. Higher biomass of herbivorous fish weakens the negative effect of macroalgae on juvenile corals, and structural complexity on granitic reefs is a strong positive predictor of juvenile coral density. However, structural complexity on carbonate or patch reefs was negatively related to juvenile coral density, highlighting the importance of considering interactive terms in analyses. Our study emphasises the importance of habitat for juvenile coral abundance at both fine and seascape scales, adding to the literature on drivers of reef rebound potential following severe coral bleaching.

Marine fisheries in coastal ecosystems in many areas of the world have historically removed large-bodied individuals, potentially impairing ecosystem functioning and the long-term sustainability of fish populations. Reporting on size-based indicators that link to food-web structure can contribute to ecosystem-based management, but the application of these indicators over large (cross-ecosystem) geographical scales has been limited to either fisheries-dependent catch data or diver-based methods restricted to shallow waters (20 m) that can misrepresent the abundance of large-bodied fished species. We obtained data on the body-size structure of 82 recreationally or commercially targeted marine demersal teleosts from 2904 deployments of baited remote underwater stereo-video (stereo-BRUV). Sampling was at up to 50 m depth and covered approximately 10,000 km of the continental shelf of Australia. Seascape relief, water depth, and human gravity (i.e., a proxy of human impacts) were the strongest predictors of the probability of occurrence of large fishes and the abundance of fishes above the minimum legal size of capture. No-take marine reserves had a positive effect on the abundance of fishes above legal size, although the effect varied across species groups. In contrast, sublegal fishes were best predicted by gradients in sea surface temperature (mean and variance). In areas of low human impact, large fishes were about three times more likely to be encountered and fishes of legal size were approximately five times more abundant. For conspicuous species groups with contrasting habitat, environmental, and biogeographic affinities, abundance of legal-size fishes typically declined as human impact increased. Our large-scale quantitative analyses highlight the combined importance of seascape complexity, regions with low human footprint, and no-take marine reserves in protecting large-bodied fishes across a broad range of species and ecosystem configurations.Las pesquerías marinas de los ecosistemas costeros en muchas áreas del mundo históricamente han removido a individuos de gran tamaño, potencialmente perjudicando el funcionamiento ambiental y la sostenibilidad a largo plazo de las poblaciones de peces. Los reportes sobre los indicadores basados en el tamaño que se vinculan con la estructura de la red alimenticia pueden contribuir al manejo basado en el ecosistema, aunque la aplicación de estos indicadores a grandes (inter-ecosistemas) escalas geográficas ha estado limitada a datos de captura dependientes de las pesquerías o métodos basados en el buceo restringidos a aguas someras (20 m), lo cual puede representar erróneamente la abundancia de peces de gran tamaño capturados para la pesca. Obtuvimos los datos de la estructura del tamaño corporal de 82 teleósteos marinos demersales focalizados por razones recreativas o comerciales tomados de 2,904 despliegues de video estéreo subacuático remoto con cebo (stereo-BRUV, en inglés). El muestreo se realizó hasta los 50 metros de profundidad y abarcó aproximadamente 10,000 km del talud continental de Australia. El relieve marino, la profundidad del agua y la gravedad humana (es decir, un indicador de los impactos humanos) fueron los pronosticadores más sólidos de la probabilidad de incidencia de los peces de gran tamaño y de la abundancia de peces por encima del tamaño legal mínimo de captura. Las reservas marinas de protección total tienen un efecto positivo sobre la abundancia de los peces que están por encima del tamaño legal, aunque el efecto varió según el grupo de especies. Como contraste, los peces de tamaño sublegal fueron pronosticados de mejor manera usando gradientes de la temperatura de la superficie marina (media y varianza). En las áreas con un impacto humano reducido, los peces de gran tamaño corporal tenían hasta tres veces mayor probabilidad de aparecer y los peces de tamaño legal eran aproximadamente cinco veces más abundantes. Para los grupos de especies conspicuas con afinidades contrastantes de hábitat, ambiente y biogeografía, la abundancia de peces de tamaño legal normalmente declinó conforme aumentó el impacto humano. Nuestros análisis cuantitativos a gran escala resaltan la importancia conjunta que tienen la complejidad marina, las regiones con una huella humana reducida y las reservas marinas de protección total para la protección de los peces de gran tamaño corporal en una extensa gama de especies y configuraciones ecosistémicas. Efectos de la Huella Humana y los Factores Biofísicos sobre la Estructura del Tamaño Corporal de Especies Marinas Capturadas para la Pesca.

Macroalgal forests are a prominent component of tropical seascapes providing food and shelter for many species whilst subsidising secondary productivity in coastal ecosystems. Monitoring and managing macroalgae requires an understanding of key processes that alter these assemblages, especially at the local scale. Here we consider how sediment depth/cover and abundance of the macroalgal grazing urchin Tripneustes gratilla (Linnaeus, 1758), influence variation in community composition and physical structure of macroalgal patches within the World Heritage listed Ningaloo Reef, Western Australia. Our study found high urchin densities in sites with lower sediment loads and that sediments, urchin abundance and seascape position combined, explained 32% of the spatial variation in macroalgal forest community composition. We also found a greater occurrence of Sargassopsis, Caulerpa, Sirophysalis and Hormophysa in the lagoon where sediment cover/depth was high. Canopy height and cover of canopy forming macroalgae was also greater where sediment loads were high and urchin abundance low. Macroalgal genera with a strong and robust thallus were found in sediment depths up to 6 cm as opposed to those with softer, fragile thalli that were found in sediments

Marine reserves are a key tool for the conservation of marine biodiversity, yet only ~2.5% of the world's oceans are protected. The integration of marine reserves into connected networks representing all habitats has been encouraged by international agreements, yet the benefits of this design has not been tested empirically. Australia has one of the largest systems of marine reserves, providing a rare opportunity to assess how connectivity influences conservation success. An Australia‐wide dataset was collected using baited remote underwater video systems deployed across a depth range from 0 to 100 m to assess the effectiveness of marine reserves for protecting teleosts subject to commercial and recreational fishing. A meta‐analytical comparison of 73 fished species within 91 marine reserves found that, on average, marine reserves had 28% greater abundance and 53% greater biomass of fished species compared to adjacent areas open to fishing. However, benefits of protection were not observed across all reserves (heterogeneity), so full subsets generalized additive modelling was used to consider factors that influence marine reserve effectiveness, including distance‐based and ecological metrics of connectivity among reserves. Our results suggest that increased connectivity and depth improve the aforementioned marine reserve benefits and that these factors should be considered to optimize such benefits over time. We provide important guidance on factors to consider when implementing marine reserves for the purpose of increasing the abundance and size of fished species, given the expected increase in coverage globally. We show that marine reserves that are highly protected (no‐take) and designed to optimize connectivity, size and depth range can provide an effective conservation strategy for fished species in temperate and tropical waters within an overarching marine biodiversity conservation framework., An Australia‐wide dataset was collected using baited remote underwater video systems deployed across a depth range from 0 to 100 m to assess the effectiveness of marine reserves for protecting fished species. A meta‐analytical comparison of 73 fished species within 91 marine reserves found that, on average, marine reserves had 28% greater abundance and 53% greater biomass of fished species compared to adjacent areas open to fishing. We show that marine reserves that are highly protected (no‐take) and designed to optimize connectivity, size and depth range can provide an effective conservation strategy for fished species in temperate and tropical waters.

Understanding ecological processes that shape contemporary and future communities facilitates knowledge-based environmental management. In marine ecosystems, one of the most important processes is the supply of new recruits into a population. Here, we investigated spatiotemporal variability in coral recruitment at 15 reefs throughout the Dampier Archipelago, north-western Australia between 2015 and 2017 and identified the best environmental predictors for coral recruitment patterns over this period. Large differences in recruitment were observed among years with the average density of recruits increasing by 375% from 0.017 recruits cm−2 in 2015 to 0.059 recruits cm−2 in 2017. Despite differences in recruitment among years, the rank order of coral recruit density among reefs remained similar among years, suggesting that spatial variation in recruitment within the Dampier Archipelago is partly deterministic and predictable. The density of coral recruits was best explained by percent cover of live corals at both local (within 5 m) and meso-scales (within 15 km), water turbidity and an oceanographic model that predicted larval dispersal. The highest density of coral recruits (~0.13 recruits cm−2 or 37 recruits per tile) occurred on reefs within sub-regions (15 km) with greater than 35% coral cover, low to moderate turbidity (KD490 < 0.2) and moderate to high modelled predictions of larval dispersal. Our results demonstrate that broad-scale larval dispersal models, when combined with local metrics of percent hard coral cover and water turbidity, can reliably predict the relative abundance of coral recruits over large geographical areas and thus can identify hotspots of recruit abundance and potential recovery following environmental disturbances; information that is essential for effective management of coral reefs.

The Ningaloo coast of north-western Australia (eastern Indian Ocean) hosts one of the world's longest and most extensive fringing coral reef systems, along with globally significant abundances of large marine fauna such as whale sharks. These characteristics – which have contributed to its inscription on the World Heritage list – exist because of the unique climatic, geomorphologic and oceanographic conditions. The region is hot and arid, so runoff of water from land is low, facilitating clear water that allows corals to grow close to the shore. The poleward-flowing Leeuwin Current is an important influence, bringing warm water and generally suppressing coastal upwelling. During the austral summer, strong southerly winds generate the equatorward-flowing Ningaloo Current on the inner shelf – this current facilitates sporadic upwelling events that enhance concentrations of nutrients, which in turn enhance pelagic primary productivity that supports the reef's biota. The coast has experienced several marine heatwaves since 2011 that have caused mortality of corals and probably seagrass, albeit relatively less than elsewhere along the coast. Wind-generated surface waves break over the fringing reef crest, causing cooling currents that tend to dampen warming – although this mechanism seems not to have prevented some areas from experiencing damaging heat, and corals in places that do not receive the wave-generated currents have experienced substantial mortality. Herbivores, from fish to green turtles, are abundant, and in the lagoon, extensive stands of large brown algae provide an important habitat for newly recruited fish. There has been a decline in abundance of some fish. Predictions of future pressures include a weaker but more variable Leeuwin Current and increased human use. The ability of Ningaloo's 144ecosystems to withstand growing pressures will depend partly on the rate and magnitude of global warming but also on actions that manage local pressures from increasing human use. These actions will rely on continued science to provide the evidence needed to identify the pressures, the changes they create and the ways that we can mitigate them.

Canopy-forming macroalgae can construct extensive meadow habitats in tropical seascapes occupied by fishes that span a diversity of taxa, life-history stages and ecological roles. Our synthesis assessed whether these tropical macroalgal habitats have unique fish assemblages, provide fish nurseries and support local fisheries. We also applied a meta-analysis of independent surveys across 23 tropical reef locations in 11 countries to examine how macroalgal canopy condition is related to the abundance of macroalgal-associated fishes. Over 627 fish species were documented in tropical macroalgal meadows, with 218 of these taxa exhibiting higher local abundance within this habitat (cf. nearby coral reef) during at least one life-history stage. Major overlap (40%-43%) in local fish species richness among macroalgal and seagrass or coral reef habitats suggest macroalgal meadows may provide an important habitat refuge. Moreover, the prominence of juvenile fishes suggests macroalgal meadows facilitate the triphasic life cycle of many fishes occupying diverse tropical seascapes. Correlations between macroalgal canopy structure and juvenile abundance suggests macroalgal habitat condition can influence levels of replenishment in tropical fish populations, including the majority of macroalgal-associated fishes that are targeted by commercial, subsistence or recreational fisheries. While many macroalgal-associated fishery species are of minor commercial value, their local importance for food and livelihood security can be substantial (e.g. up to 60% of landings in Kenyan reef fisheries). Given that macroalgal canopy condition can vary substantially with sea temperature, there is a high likelihood that climate change will impact macroalgal-associated fish and fisheries.

Bioindicators are useful for determining nutrient regimes in marine environments, but their ability to evaluate corals reefs in different ecological states is poorly understood. The precision, availability and congruency of eight potential bioindicators (brown macroalgae, green macroalgae, turf algae, cyanobacteria, soft corals, zoanthids, sponges, and sediment) and their stable isotopic and elemental signatures (δ15N, δ13C, %N, %C, and C:N Ratio) were assessed across 21 reefs in the Inner Seychelles. The coefficient of variation (CoV) for δ15N showed that green and brown macroalgae were highly precise (2.47 ± 0.95, n = 11; 4.68 ± 1.33, n = 16, respectively), though were less common on coral-mortality reefs relative to macroalgal-dominated ones. Zoanthids were also highly precise for δ15N (2.98 ± 1.20), but were more readily available regardless of reef state (n = 18). Congruency was low among these indicators, suggesting that different physiological mechanisms for nutrient processing have a stronger influence on a bioindicator's effectiveness than reef state.

A complex landscape for reef management Coral reefs are among the most biodiverse systems in the ocean, and they provide both food and ecological services. They are also highly threatened by climate change and human pressure. Cinner et al. looked at how best to maximize three key components of reef use and health: fish biomass, parrotfish grazing, and fish trait diversity. They found that when human pressure is low, all three traits can be maximized at high conservation levels. However, as human use and pressure increase, it becomes increasingly difficult to promote biodiversity conservation. At some levels of human impact, even the highest amount of protection is not able to maximize biodiversity conservation. Science , this issue p. 307

Herbivory is a key process on coral reefs, which, through grazing of algae, can help sustain coral-dominated states on frequently disturbed reefs and reverse macroalgal regime shifts on degraded ones. Our understanding of herbivory on reefs is largely founded on feeding observations at small spatial scales, yet the biomass and structure of herbivore populations is more closely linked to processes which can be highly variable across large areas, such as benthic habitat turnover and fishing pressure. Though our understanding of spatiotemporal variation in grazer biomass is well developed, equivalent macroscale approaches to understanding bottom-up and top-down controls on herbivory are lacking. Here, we integrate underwater survey data of fish abundances from four Indo-Pacific island regions with herbivore feeding observations to estimate grazing rates for two herbivore functions, cropping (which controls turf algae) and scraping (which promotes coral settlement by clearing benthic substrate), for 72 coral reefs. By including a range of reef states, from coral to algal dominance and heavily fished to remote wilderness areas, we evaluate the influences of benthic habitat and fishing on the grazing rates of fish assemblages. Cropping rates were primarily influenced by benthic condition, with cropping maximized on structurally complex reefs with high substratum availability and low macroalgal cover. Fishing was the primary driver of scraping function, with scraping rates depleted at most reefs relative to remote, unfished reefs, though scraping did increase with substratum availability and structural complexity. Ultimately, benthic and fishing conditions influenced herbivore functioning through their effect on grazer biomass, which was tightly correlated to grazing rates. For a given level of biomass, we show that grazing rates are higher on reefs dominated by small-bodied fishes, suggesting that grazing pressure is greatest when grazer size structure is truncated. Stressors which cause coral declines and clear substrate for turf algae will likely stimulate increases in cropping rates, in both fished and protected areas. In contrast, scraping functions are already impaired at reefs inhabited by people, particularly where structural complexity has collapsed, indicating that restoration of these key processes will require scraper biomass to be rebuilt towards wilderness levels.

The worlds' coral reefs are declining due to the combined effects of natural disturbances and anthropogenic pressures including thermal coral bleaching associated with global climate change. Nearshore corals are receiving increased anthropogenic stress from coastal development and nutrient run-off. Considering forecast increases in global temperatures, greater understanding of drivers of recovery on nearshore coral reefs following widespread bleaching events is required to inform management of local stressors. The west Pilbara coral reefs, with cross-shelf turbidity gradients coupled with a large nearby dredging program and recent history of repeated coral bleaching due to heat stress, represent an opportune location to study recovery from multiple disturbances. Mean coral cover at west Pilbara reefs was monitored from 2009 to 2018 and declined from 45% in 2009 to 5% in 2014 following three heat waves. Recruitment and juvenile abundance of corals were monitored from 2014 to 2018 and were combined with biological and physical data to identify which variables enhanced or hindered early-stage coral recovery of all hard corals and separately for the acroporids, the genera principally responsible for recovery in the short-term (

As climate changes increase heat stress on tropical ecosystems, the long-term persistence of coral reefs requires rapid coral recovery following coral bleaching events. Using the extent of coral cover return to a pre-bleaching baseline as a benchmark, recovery of fast-growing and stress-tolerant coral growth forms suggests that reefs can bounce back between repeated disturbances if given adequate time and protection from anthropogenic disturbances. However, long-term recovery dynamics of coral communities following severe bleaching and mass mortality are limited, particularly for fringing reefs along inhabited coastlines where human stressors may compromise recovery potential. Here, we examine the dynamics and drivers of coral recovery in Seychelles, where 12 reefs returned to pre-bleaching coral cover levels after a severe bleaching event caused > 95% coral mortality. Six reefs with initially low cover (

This research is supported by an Australian Government Research Training Program (RTP) Scholarship, as well as with funding provided by the Linnean Society of New South Wales. We also wish to thank Kelsey Sanborn for assistance in the field.

Biotic connectivity between ecosystems can provide major transport of organic matter and nutrients, influencing ecosystem structure and productivity1, yet the implications are poorly understood owing to human disruptions of natural flows2. When abundant, seabirds feeding in the open ocean transport large quantities of nutrients onto islands, enhancing the productivity of island fauna and flora3,4. Whether leaching of these nutrients back into the sea influences the productivity, structure and functioning of adjacent coral reef ecosystems is not known. Here we address this question using a rare natural experiment in the Chagos Archipelago, in which some islands are rat-infested and others are rat-free. We found that seabird densities and nitrogen deposition rates are 760 and 251 times higher, respectively, on islands where humans have not introduced rats. Consequently, rat-free islands had substantially higher nitrogen stable isotope (δ15N) values in soils and shrubs, reflecting pelagic nutrient sources. These higher values of δ15N were also apparent in macroalgae, filter-feeding sponges, turf algae and fish on adjacent coral reefs. Herbivorous damselfish on reefs adjacent to the rat-free islands grew faster, and fish communities had higher biomass across trophic feeding groups, with 48% greater overall biomass. Rates of two critical ecosystem functions, grazing and bioerosion, were 3.2 and 3.8 times higher, respectively, adjacent to rat-free islands. Collectively, these results reveal how rat introductions disrupt nutrient flows among pelagic, island and coral reef ecosystems. Thus, rat eradication on oceanic islands should be a high conservation priority as it is likely to benefit terrestrial ecosystems and enhance coral reef productivity and functioning by restoring seabird-derived nutrient subsidies from large areas of ocean.

Full‐subsets information theoretic approaches are becoming an increasingly popular tool for exploring predictive power and variable importance where a wide range of candidate predictors are being considered. Here, we describe a simple function in the statistical programming language R that can be used to construct, fit, and compare a complete model set of possible ecological or environmental predictors, given a response variable of interest and a starting generalized additive (mixed) model fit. Main advantages include not requiring a complete model to be fit as the starting point for candidate model set construction (meaning that a greater number of predictors can potentially be explored than might be available through functions such as dredge); model sets that include interactions between factors and continuous nonlinear predictors; and automatic removal of models with correlated predictors (based on a user defined criterion for exclusion). The function takes continuous predictors, which are fitted using smoothers via either gam, gamm (mgcv) or gamm4, as well as factor variables which are included on their own or as two‐level interaction terms within the gam smooth (via use of the “by” argument), or with themselves. The function allows any model to be constructed and used as a null model, and takes a range of arguments that allow control over the model set being constructed, including specifying cyclic and linear continuous predictors, specification of the smoothing algorithm used, and the maximum complexity allowed for smooth terms. The use of the function is demonstrated via case studies that highlight how appropriate model sets can be easily constructed and the broader utility of the approach for exploratory ecology.

Aim To describe, model and assess the relative importance of environmental and climatic factors likely influencing the regional distribution of coral cover and assemblages with contrasting life histories and susceptibilities to bleaching. Location We compiled the first comprehensive empirical dataset for coral communities in the south-eastern Indian Ocean (SEIO), incorporating information from 392 sites along the western coast of Australia and offshore atolls/islands across ~19° of latitude. Methods We assessed hard coral cover and community composition to genus using point-intercept transects or point-count analysis of digital images taken along transects. We explored spatial variation in environmental conditions and in composition of corals with contrasting life histories. After de-trending the temporal patterns, we assessed the relative importance of environmental metrics to coral cover, life histories and bleaching susceptibility using a full subsets model-selection approach with generalized additive mixed models, accounting for both temporal and among site variation. Results The distribution of temperature, light, the frequency of temperature anomalies and tropical cyclones appear to be drivers of coral community structure. Functional diversity of low- to mid-latitude coral communities may convey some resilience to thermal stress, while higher latitude communities dominated by Competitive and Bleaching-Susceptible taxa may lack this functional resilience. These patterns likely reflect varying historical exposure to cyclones and temperature anomalies. Main conclusions As evident in recent years, changing background conditions and regimes of disturbance in coming decades will shift the distribution, functional diversity and resilience of coral reefs throughout the SEIO. The rate and magnitude of environmental change will ultimately determine the future of the tropical reefs and whether the higher latitude reefs provide some refuge from climate change. Our study highlights the need to quantify the distributional properties of key environmental metrics to better understand and predict reef condition through coming decades.

Predator populations are in decline globally. Exploitation, as well as habitat degradation and associated changes in prey availability are key drivers of this process of trophic downgrading. In the short term, longevity and dietary adaptability of large-bodied consumers can mask potential sublethal effects of a changing prey base, producing a delayed effect that may be difficult to detect. In coral reef ecosystems, regime shifts from coral- to algae-dominated states caused by coral bleaching significantly alter the assemblage of small-bodied reef fish associated with a reef. The effects of this changing prey community on reef-associated mesopredators remains poorly understood. This study found that the total diversity, abundance and biomass of piscivorous mesopredators was lower on regime-shifted reefs than recovering reefs, 16 years after the 1998 mass coral bleaching event. We used stable isotope analyses to test for habitat-driven changes in the trophic niche occupied by a key piscivorous fishery target species on reefs that had regime-shifted or recovered following climatic disturbance. Using morphometric indices, histology, and lipid analyses, we also investigated whether there were sublethal costs for fish on regime-shifted reefs. Stable isotopes demonstrated that fish from regime-shifted reefs fed further down the food chain, compared to recovering reefs. Lower densities of hepatocyte vacuoles in fish from regime-shifted reefs, and reduced lipid concentrations in spawning females from these reefs, indicated a reduction in energy stores, constituting a sublethal and potential delayed effect on populations. Reduced energy reserves in mesopredators could lead to energy allocation trade-offs, and decreased growth rates, fecundity and survivorship, resulting in potential population declines in the longer term. A plain language summary is available for this article.

Not enough time for recovery Coral bleaching occurs when stressful conditions result in the expulsion of the algal partner from the coral. Before anthropogenic climate warming, such events were relatively rare, allowing for recovery of the reef between events. Hughes et al. looked at 100 reefs globally and found that the average interval between bleaching events is now less than half what it was before. Such narrow recovery windows do not allow for full recovery. Furthermore, warming events such as El Niño are warmer than previously, as are general ocean conditions. Such changes are likely to make it more and more difficult for reefs to recover between stressful events. Science , this issue p. 80

Seagrass meadows and the often poorly described ichthyofauna that reside within this habitat are threatened globally. Small-bodied fish in seagrass habitats are often of conservation concern due to their vulnerable life-history characteristics, depauperate distribution and abundance data and importance to artisanal fisheries. We employ a novel approach simultaneously deploying concentric trawl nets comparing mesh sizes that capture cryptic within-canopy species from Posidonia spp. meadows in Shark Bay and Ngari Capes Marine Parks, Western Australia. A discrete species assemblage passed through the 10 mm trawl net and were retained on the 2 mm net at both locations without effecting species richness estimates. Fish size distributions within net fractions differed between locations; fish retained by the 2 mm net at NCMP were much longer than those in the >10 mm net-fraction at that location, and the 2−10 mm portion of the SBMP catch. Of pipefish species globally, 30 % are identified as data-deficient by the IUCN. In NCMP 46 % of fish in the 2−10 mm fraction were pipefish and only 4 % of the >10 mm fraction, whereas pipefish were just 0.4% of individuals recorded in the smaller mesh size in SBMP. In both locations, seahorse species were only captured in the larger net size. These results demonstrate that small differences in net mesh-size can drastically alter catch compositions in seagrass habitat. Accurately surveying syngnathids of conservation interest will require the use of a net mesh that selects fish based on body shape rather than length, an important consideration regarding data-deficient pipefish species. Furthermore, fisheries and research by-catch may be minimised by using mesh sizes that avoid prominent syngnathids when net-fishing in seagrass.

Many marine fish populations have declined due to the individual or cumulative impacts of increasing water temperatures, ocean acidification, overfishing and other human-induced impacts such as land run-off, dredging and habitat alteration. Some solutions may be offered by ecosystem-based fisheries and conservation management. However, understanding their effectiveness relies on the availability of good quality data on the size distributions and abundance of fish populations and assemblages, collected at appropriate temporal and spatial scales. Since the early 2000s, baited remote underwater video systems (BRUVs) have become a popular tool for collecting data on fish assemblages across a range of depths and habitats. In Australia, this technique has been adopted by many different agencies and institutions, creating a unique opportunity to compile a continental-scale synthesis of fish data using a standardised sampling technique. Key Australian researchers and managers were invited to contribute to a synthesis workshop on baited underwater video in Albany, Western Australia between the 4th and 8th of February 2018. Data from 19,939 BRUVs deployments, collected between 2000 and 2017 around Australia, were compiled using GlobalArchive (globalarchive.org). The workshop identified and prioritised several key research themes that would contribute to the conservation and sustainable management of focal species and broad assemblages. Our goal is to describe where and when the data were collected, the type of equipment used and how the imagery was analysed. We also discuss the types of questions that can be addressed by analysing these standardised datasets and the potential benefits to conservation and fisheries management.