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The Pictet-Spengler reaction is a valuable route to 1,2,3,4-tetrahydro-β-carboline (THBC) and isoquinoline scaffolds found in many important pharmaceuticals. Strictosidine synthase (STR) catalyzes the Pictet-Spengler condensation of tryptamine and the aldehyde secologanin to give (S)-strictosidine as a key intermediate in indole alkaloid biosynthesis. STRs also accept short-chain aliphatic aldehydes to give enantioenriched alkaloid products with up to 99% ee STRs are thus valuable asymmetric organocatalysts for applications in organic synthesis. The STR catalysis of reactions of small aldehydes gives an unexpected switch in stereopreference, leading to formation of the (R)-products. Here we report a rationale for the formation of the (R)-configured products by the STR enzyme from Ophiorrhiza pumila (OpSTR) using a combination of X-ray crystallography, mutational, and molecular dynamics (MD) studies. We discovered that short-chain aldehydes bind in an inverted fashion compared to secologanin leading to the inverted stereopreference for the observed (R)-product in those cases. The study demonstrates that the same catalyst can have two different productive binding modes for one substrate but give different absolute configuration of the products by binding the aldehyde substrate differently. These results will guide future engineering of STRs and related enzymes for biocatalytic applications.

The sulfolipid sulfoquinovosyl diacylglycerol (SQDG), produced by plants, algae, and cyanobacteria, constitutes a major sulfur reserve in the biosphere. Microbial breakdown of SQDG is critical for the biological utilization of its sulfur. This commences through release of the parent sugar, sulfoquinovose (SQ), catalyzed by sulfoquinovosidases (SQases). These vanguard enzymes are encoded in gene clusters that code for diverse SQ catabolic pathways. To identify, visualize and isolate glycoside hydrolase CAZY‐family 31 (GH31) SQases in complex biological environments, we introduce SQ cyclophellitol‐aziridine activity‐based probes (ABPs). These ABPs label the active site nucleophile of this enzyme family, consistent with specific recognition of the SQ cyclophellitol‐aziridine in the active site, as evidenced in the 3D structure of Bacillus megaterium SQase. A fluorescent Cy5‐probe enables visualization of SQases in crude cell lysates from bacteria harbouring different SQ breakdown pathways, whilst a biotin‐probe enables SQase capture and identification by proteomics. The Cy5‐probe facilitates monitoring of active SQase levels during different stages of bacterial growth which show great contrast to more traditional mRNA analysis obtained by RT‐qPCR. Given the importance of SQases in global sulfur cycling and in human microbiota, these SQase ABPs provide a new tool with which to study SQase occurrence, activity and stability. [ABSTRACT FROM AUTHOR]

In this study, we analyzed a tooth sample of a renal patient using wavelength-dispersive X-ray fluorescence (WDXRF) spectrometry and Fourier transform infrared (FT-IR) spectrometry to quantify major and trace elements, and heavy and toxic elements in particular. The elements detected and quantified in the tooth sample were calcium (Ca), phosphorus (P), carbon (C), oxygen (O), magnesium (Mg), sodium (Na), chlorine (Cl), sulfur (S), potassium (K), silicon (Si), iron (Fe), aluminum (Al), zinc (Zn), strontium (Sr), chromium (Cr), nickel (Ni), copper (Cu), and zirconium (Zr). FT-IR spectrometry has been used to extract relevant information about the molecular contents of the tooth sample. We have compared our results with those obtained in the laboratory for the healthy subjects, and also with the values reported in the literature as obtained using XRF spectrometry only. Elements found in the tooth sample were correlated with the chronic kidney disease (CKD) of the patients. An outline of the XRF apparatus and applications of XRF as a tool for analyzing to dental specimens are also briefly highlighted., Calcified tissues, such as bones and teeth, contain biological signatures from their living phase. The habitat and nutritional and environmental conditions of people can be determined by monitoring the trace [...]