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Ploidy manipulation, such as triploidy, in farmed oysters has been used as a tool to enhance oyster quality throughout all seasons because triploid oysters allocate less energy to gametogenesis, and therefore are deemed better performers than fertile diploids. Nevertheless, scientific reports describing no differences between ploidies and, in certain conditions, disadvantages of triploids are not uncommon. As the use of triploid oyster seed increases culture cost for growers, consistency in performance of triploids is considered to be an important goal. Thus, research to assess how ploidy affects physiological processes underlying oyster performance is fundamental for the aquaculture industry. This work was undertaken to assess if ploidy-based differences in performance in the two most commonly cultivated commercial species of oyster in the United States, Crassostrea virginica and Crassostrea gigas, are associated with filtration, feeding, and metabolism. To test this hypothesis, biodeposition measurements were made with oysters exposed to ambient water conditions at locations and seasons providing a variety of environmental conditions. Oysters did not show differences in filtration and feeding associated with ploidy, but physiological feeding variables fluctuated with environmental characteristics associated with spatial and seasonal differences. A preliminarily test of the hypothesis that differences in energy metabolism may account for differences in performance among ploidy levels indicates that basal metabolic rates of diploid, triploid, and tetraploid Eastern oysters are not different.

This study assessed the energy budget for juvenile Atlantic Sea Scallop, Placopecten magellanicus, during a natural drop in temperature (15.6°C to 5.8°C) over an 8-week time period during the fall at three different enrichment levels of carbon dioxide (CO2). Every 2 weeks, individuals were sampled for ecophysiological measurements of feeding activity, respiration rate (RR) and excretion rate (ER) to enable the calculation of scope for growth (SFG) and atomic oxygen:nitrogen ratios (O:N). In addition, 36 individuals per treatment were removed for shell height, dry tissue weight (DTW) and dry shell weight (DSW). We found a significant decrease in feeding rates as CO2 increased. Those rates also were significantly affected by temperature, with highest feeding at 9.4°C. No significant CO2 effect was observed for catabolic energy processes (RR and ER); however, these rates did increase significantly with temperature. The O:N ratio was not significantly affected by CO2, but was significantly affected by temperature. There was a significant interaction between CO2 and temperature for ER and the O:N ratio, with low CO2 levels resulting in a U-shaped response that was not sustained as CO2 levels increased. This suggests that the independent effects of CO2 and temperature observed at low levels are different once a CO2 threshold is reached. Additionally, there were significant differences in growth estimators (shell height and DSW), with the best growth occurring at the lowest CO2 level. In contrast to temperature variations that induced a trade-off response in energy acquisition and expenditure, results from this research support the hypothesis that sea scallops have a limited ability to alter physiological processes to compensate for increasing CO2.

A dynamic energy budget (DEB) model integrating pCO

Cues that drive bivalve settlement and abundance in sediments are not well understood, but recent reports suggest that sediment carbonate chemistry may influence bivalve abundance. In 2013, we conducted field experiments to assess the relationship between porewater sediment carbonate chemistry (pH, alkalinity (At), dissolved inorganic carbon (DIC)), grain size, and bivalve abundance throughout the July–September settlement period at two sites in Long Island Sound (LIS), CT. Two dominate bivalves species were present during the study period Mya arenaria and Nucula spp. Akaike's linear information criterion models, indicated 29% of the total community abundance was predicted by grain size, salinity, and pH. When using 2 weeks of data during the period of peak bivalve settlement, pH and phosphate concentrations accounted 44% of total bivalve community composition and 71% of Nucula spp. abundance with pH, phosphate, and silica. These results suggest that sediment carbonate chemistry may influence bivalve abundance in LIS.

The East River tidal strait, located between New York Harbor and Western Long Island Sound, is characterized by high suspended silt concentrations with low organic content kept in suspension by intense tidal currents. Inorganic nutrients, including nitrate, nitrite, ammonia, and phosphate, were high even during the summer. Dissolved inorganic nitrogen (DIN) concentrations generally were above 20 µM and did not likely limit phytoplankton growth. Despite high nutrient concentrations, median chlorophyll a concentration was only 1.53 µg l−1, making the East River tidal strait a high-nutrient, low-chlorophyll (HNLC) area, likely a result of suspended silt blocking light penetration into the surface water. There were times at which the ratio of mixed layer to depth of the euphotic zone was generally greater than what has been suggested for phytoplankton to produce net primary production. The high-nutrient East River tidal strait is likely one of the sources of nutrients fueling summer phytoplankton production and consequent hypoxia in the Western Long Island Sound as silt settles from surface water in the lower turbulence conditions of the western narrows of Long Island Sound, thereby allowing light penetration and subsequent consumption of dissolved nutrients by phytoplankton.

Mercaldo-Allen, R.; Goldberg, R.; Clark, P.; Kuropat, C.; Meseck, S.L., and Rose, J.M., 2016. Benthic ecology of northern quahog beds with different hydraulic dredging histories in Long Island Sound. This paper evaluates benthic community composition of four shellfish beds in Long Island Sound near Milford, Connecticut, where northern quahog or hard clams, Mercenaria mercenaria (Linnaeus 1758), were harvested by hydraulic dredge. These leased beds reflect a variety of dredging histories; 0 year (dredged just before sampling began), 1 year postharvest, 2 years postharvest, and an inactive clam bed left fallow for at least 10 years. Benthic sediment was sampled at 1- to 2-week intervals from June to October 2011 using a Smith–McIntyre grab. Benthic community composition was significantly influenced by dredging history and sampling month. Abundance of benthic organisms (number of individuals and biovolume) and total organic matter concentrations were significantly greater at the 0-year site than at ...

In this study, we assessed the Atlantic surfclam (Spisula solidissima) energy budget under different ocean acidification conditions (OA). During 12 weeks, 126 individuals were maintained at three different ρCO2 concentrations. Every two weeks, individuals were sampled for physiological measurements and scope for growth (SFG). In the high ρCO2 treatment, clearance rate decreased and excretion rate increased relative to the low ρCO2 treatment, resulting in reduced SFG. Moreover, oxygen:nitrogen (O:N) excretion ratio dropped, suggesting that a switch in metabolic strategy occurred. The medium ρCO2 treatment had no significant effects upon SFG; however, metabolic loss increased, suggesting a rise in energy expenditure. In addition, a significant increase in food selection efficiency was observed in the medium treatment, which could be a compensatory reaction to the metabolic over-costs. Results showed that surfclams are particularly sensitive to OA; however, the different compensatory mechanisms observed indicate that they are capable of some temporary resilience.

Gills of marine bivalves, the organs that mediate water flow for feeding and other physiological functions, are exposed to increasing levels of carbon dioxide (CO2) in seawater, in response to ocean acidification (OA). We examined the effects of elevated dissolved CO2 upon filtration and feeding behavior of the blue mussel, Mytilus edulis, under field conditions and in laboratory studies. We further investigated possible changes in cilia beat function in response to elevated dissolved CO2. Physiological filtration and feeding variables measured; included clearance, filtration, organic ingestion, and assimilation rates and selection efficiency, which decreased with increasing CO2. Absorption efficiency was not affected by dissolved CO2. Cilia beat frequency declined in excised lateral cilia (lc) exposed to increasing CO2 levels, which appears to account for decreased clearance rates observed in field and laboratory experiments. Our data suggest that under conditions of increased CO2 blue mussels will experience changes in physiological filtration, feeding rates, and cilia beat function that could have consequences for fitness and performance.

Carbon dioxide (CO2) is the primary substrate for photosynthesis by the phytoplankton that form the base of the marine food web and mediate biogeochemical cycling of C and nutrient elements. Specific growth rate and elemental composition (C:N:P) were characterized for 7 cosmopolitan coastal and oceanic phytoplankton species (5 diatoms and 2 chlorophytes) using low density, nutrient-replete, semi-continuous culture experiments in which CO2 was manipulated to 4 levels ranging from post-bloom/glacial maxima (2900 ppm). Specific growth rates at high CO2 were from 19 to 60% higher than in low CO2 treatments in 4 species and 44% lower in 1 species; there was no significant change in 2 species. Higher CO2 availability also resulted in elevated C:P and N:P molar ratios in Thalassiosira pseudonana (~60 to 90% higher), lower C:P and N:P molar ratios in 3 species (~20 to 50% lower), and no change in 3 species. Carbonate system-driven changes in growth rate did not necessarily result in changes in elemental composition, or vice versa. In a subset of 4 species for which fatty acid composition was examined, elevated CO2 did not affect the contribution of polyunsaturated fatty acids to total fatty acids significantly. These species show relatively little sensitivity between present day CO2 and predicted ocean acidification scenarios (year 2100). The results, however, demonstrate that CO2 availability at environmentally and geologically relevant scales can result in large changes in phytoplankton physiology, with potentially large feedbacks to ocean biogeochemical cycles and ecosystem structure.

Joint Meeting of the Northeast Aquaculture Conference and Exposition and the 35th Milford Aquaculture Seminar, 14-16 January 2015, Portland, Maine

Shellfish aquaculture is gaining acceptance as a tool to reduce nutrient over enrichment in coastal and estuarine ecosystems through the feeding activity of the animals and assimilation of filtered particles in shellfish tissues. This ecosystem service, provided by the ribbed mussel (Geukensia demissa), was studied in animals suspended from a commercial mussel raft in the urban Bronx River Estuary, NY, in waters closed to shellfish harvest due to bacterial contamination. Naturally occurring populations of ribbed mussels were observed to be healthy and resilient in this highly urbanized environment. Furthermore, mussels grown suspended in the water column contained substantially lower concentrations of heavy metals and organic contaminants in their tissues than blue mussels (Mytilus edulis) collected at a nearby benthic site. Spat collection efforts from shore and within the water column were unsuccessful; this was identified as a key bottleneck to future large-scale implementation. Filtration experiments indicated that a fully stocked G. demissa raft would clear an average 1.2 × 10

The Penobscot River Estuary is an important system for diadromous fish in the Northeast United States of American (USA), in part because it is home to the largest remnant population of Atlantic salmon, Salmo salar, in the country. Little is known about the chemical and biological characteristics of seston in the Penobscot River Estuary. This study used estuarine transects to characterize the seston during the spring when river discharge is high and diadromous fish migration peaks in the Penobscot River Estuary. To characterize the seston, samples were taken in spring 2015 for phytoplankton identification, total suspended matter (TSM), percent organic TSM, chlorophyll a, particle size (2 μm-180 μm), particulate carbon and nitrogen concentrations, and stable carbon and nitrogen isotopes. The estuarine profiles indicate that TSM behaved non-conservatively with a net gain in the estuary. As phytoplankton constituted only 1/1000 of the particles, the non-conservative behavior of TSM observed in the estuary was most likely not attributable to phytoplankton. Particulate carbon and nitrogen ratios and stable isotope signals indicate a strong terrestrial, allochthonous signal. The seston in the Penobscot River Estuary was dominated by non-detrital particles. During a short, two-week time period, Heterosigma akashiwo, a phytoplankton species toxic to finfish, also was detected in the estuary. A limited number of fish samples, taken after the 2015 Penobscot River Estuary bloom of H. akashiwo, indicated frequent pathological gill damage. The composition of seston, along with ichthyotoxic algae, suggest the need for further research into possible effects upon resident and migratory fish in the Penobscot River Estuary.

While investigating the effects of silicon limitation on the diatom Nitzschia cf. pusilla, we observed, along with expected lower maximum cell density, colony formation. Cells attached in stacks that increased in number, reaching an average of 30 ± 1.8 (mean ± SE) cells per stack. Cells grown under silicon-replete conditions formed short stacks (three to four cells) in the stationary phase. When silicon-depleted cultures were split and silicate was added to half of the split cultures, cell stacks decreased in the cultures to which silicate was added. These results suggest that N. pusilla may possess an adaptive strategy to survive and maintain growth under silicon limitation.

A before-after-control-impact (BACI) experiment was conducted to examine the effects of hydraulic clam dredging on sediment biogeochemistry of a leased shellfish bed of Mercenaria mercenaria, northern quahog, over the course of an entire growing season. Six study plots (0.67 ha each), three dredged and three not dredged, off of Milford, Connecticut, in Long Island Sound, were sampled from May to October 2009 for porewater fluxes of total ammonia, oxygen, and hydrogen. Particulate samples were also analyzed for grain size, total nitrogen, total carbon, total sulfur, and organic carbon. Statistical analysis indicated no significant difference between dredged and not dredged sites. Grain size and oxygen flux explained 22% of the variation in the total benthic species assemblages; grain size and either total carbon or organic nitrogen explained 18% of the variation in molluscan abundance. Our study demonstrates that one-time hydraulic shellfish harvesting had minor effects on the sediment chemistry of a leased clam bed.

article i nfo Article history: We examined the effects of hydraulic dredging on the benthicecology and sediment biogeochemistry of a leased shellfish bed in Long Island Sound near Milford, Connecticut, where Northern quahog or hard clam, Mercenaria mercenaria (Linnaeus 1758), aquaculture is conducted. Six 1 ha plots were sampled at 1-2 week intervals from June through October of 2010. One-time hydraulic dredging to harvest hard clams was conducted on 3 dredged treatment plots in mid-June, while 3 control plots remained not dredged. Repeated measures analysis indicated no significant differences between dredged and not dredged plots for any of the ecological indices or sediment chemistrymeasurements. Numbers of newlysettledhardclams weresignificantlyhigher ondredgedplots. Clus- ter analysis indicated a strong seasonal influence on benthic community structure distinguishing between early andlate season assemblages.HydraulicshellfishharvestingasconductedonleasedbedsinLongIslandSounddid not appear to significantly impact benthic assemblages or sediment biogeochemistry, while sediment grain size and sampling date had a greater influence on benthic community structure. Published by Elsevier B.V.

The estuaries and continental shelf system of the United States Mid-Atlantic are subject to ocean acidification driven by atmospheric CO2, and coastal acidification caused by nearshore and land-sea interactions that include biological, chemical, and physical processes. These processes include freshwater and nutrient input from rivers and groundwater; tidally-driven outwelling of nutrients, inorganic carbon, alkalinity; high productivity and respiration; and hypoxia. Hence, these complex dynamic systems exhibit substantial daily, seasonal, and interannual variability that is not well captured by current acidification research on Mid-Atlantic organisms and ecosystems. We present recommendations for research priorities that target better understanding of the ecological impacts of acidification in the U. S. Mid-Atlantic region. Suggested priorities are: 1) Determining the impact of multiple stressors on our resource species as well as the magnitude of acidification; 2) Filling information gaps on major taxa and regionally important species in different life stages to improve understanding of their response to variable temporal scales and sources of acidification; 3) Improving experimental approaches to incorporate realistic environmental variability and gradients, include interactions with other environmental stressors, increase transferability to other systems or organisms, and evaluate community and ecosystem response; 4) Determining the capacity of important species to acclimate or adapt to changing ocean conditions; 5) Considering multi-disciplinary, ecosystem-level research that examines acidification impacts on biodiversity and biotic interactions; and 6) Connecting potential acidification-induced ecological impacts to ecosystem services and the economy. These recommendations, while developed for the Mid-Atlantic, can be applicable to other regions will help align research towards knowledge of potential larger-scale ecological and economic impacts.

Two mesocosm experiments were conducted to study the interaction of a commercial oyster-nursery system with the surrounding embayment, specifically, nutrient and plankton dynamics. The nursery was stocked with 80–200 L of oysters, sized 3–5 mm. Ambient water and the water passed through the oyster nursery were incubated in mesocosms, and nutrients and plankton were monitored over the course of 27-h incubations. The first experiment conducted in July 2009 captured a phytoplankton community dominated by Peridinium quinquecorne, a rare dinoflagellate not previously reported in the northeastern USA. Dissolved nitrogen compounds in all mesocosms were depleted within the first 6 h. The second experiment was conducted in September 2009, when a more typical and diverse phytoplankton community was present. Unlike the first experiment, Nitrate plus nitrite in the mesocosms was not depleted. Both experiments indicated little difference between the water passed through the oyster nursery and the ambient water in terms of subsequent nutrient and plankton dynamics, indicating little ‘legacy effect’ of the oyster nursery upon nutrients and plankton in this embayment. This conclusion was reached under the specific operating conditions typical for this nursery system, as chosen by the commercial partner in the study; changes in oyster stocking or flow rate are likely to change the results.

Alkaline phosphatase (AP) was detected using ELF-97® in silicon-starved Pseudo-nitzschia multiseries cells; thus, we tested two, alternative hypotheses: Pseudo-nitzschia multiseries has a high phosphate demand, showing signs of phosphate deficiency even when concentrations of orthophosphate are high, or silicate deficiency can stimulate the AP enzyme in this species. We also studied the effect of silicon deficiency on AP in three other common marine diatoms: Thalassiosira pseudonana, Nitzschia pusilla, and Nitschia closterium. Each of the species tested showed a different pattern of AP regulation. AP levels, however, increased in the four diatoms as a result of silicon deficiency, suggesting that AP may be involved in a variety of intracellular processes related to silicon deficiency. Additionally, the results of this study indicate that AP could be stimulated by stressors other than phosphate deficiency, such as silicon deficiency; therefore, it should be used cautiously as an indicator of phosphate limitation.

It was with great excitement that we planned the combined meetings of Northeast Aquaculture Conference and Exposition (NACE) and the International Conference on Shellfish Restoration (ICSR) with the 33rd Milford Aquaculture Seminar (MAS). Bringing these different but complementary audiences together resulted in a meeting that combined many different aspects of fisheries restoration and aquaculture under one umbrella.Four hundred attendees including government representatives, research scientists, industry, and academia at both the university and vocational high school levels attended this event. The meeting commenced on Wednesday December 12th 2012, with over eighty people attending seven field trips to area aquaculture farms and research facilities. The formal program began on Thursday, December 13th with a plenary session including invited speakers Eric Schwabb, Acting Assistant Secretary for Conservation and Management at NOAA; Sebastian Belle, Executive Director of the Maine Aquaculture Association and Boze Hancock from the Nature Conservancy, who discussed the role of aquaculture in fisheries restoration. John Bullard, the Northeast Regional Administrator of NOAA Fisheries Service, addressed the group during the luncheon the following day. The technical papers and workshops presented were divided into 35 sessions over three days of the meeting and included topics such as the history of aquaculture, aquaculture hatchery innovations, siting and planning issues, risk management, aquaculture business management, ocean acidification, climate change, as well as aquaculture disease issues and potential remedies. Having persons present who have experienced problems and successes, along with those in manufacturing and government responsible for addressing concerns and sharing best practices, was invaluable. Discussions among this cross-section of persons who represent different aspects of aquaculture were as important as the well-presented and interesting formal papers and poster sessions. These discussions were facilitated by the many opportunities presented during the large trade show, reception, breaks, lunches, banquet and lobster bake held throughout the meeting.The importance of and need for aquaculture were made evident by all who were in attendance. We are grateful to the twenty four meeting sponsors and to all those who participated and made this such an important and memorable meeting.While oyster restoration efforts have been under way in the Chesapeake Bay for more than two decades, until recently, varying reporting methods and success criteria made it difficult to determine how much progress had been made. A goal to “Restore native oyster habitat and populations in 20 out of 35 to 40 candidate tributaries by 2025” was set in the 2010 strategy to implement the Chesapeake Bay Protection and Restoration Executive Order (signed by President Obama in 2009). This goal made it a priority for state and federal fishery managers, academics, and scientists working on oyster restoration to collaboratively define a “restored tributary” and a “restored reef” to enable them to track progress. A team of these people, led by NOAA staff, agreed on “oyster metrics” in 2011 (http//preview.tinyurl.com/8kmbdpm) that specify key metrics and target ranges for them, including tributary size, how to determine how much restorable bottom a tributary contains, how much of that restorable bottom needs to be restored, and the minimum oyster density and biomass in that restored bottom to count a tributary as restored. These new metrics enable experts to clearly see how oyster restoration efforts are working and use adaptive management to improve these efforts. These metrics serve as a tool to plan and evaluate oyster restoration consistently across the Chesapeake Bay, and the consensus-based framework used to develop them may have broader application to other restoration activities.In the past, oyster restoration in Maryland was performed primarily

We used flow cytometry to determine if there would be a difference in hematology, selected immune functions, and hemocyte pH (pHi), under two different, future ocean acidification scenarios (pH = 7.50, 7.80) compared to current conditions (pH = 8.09) for Chionoecetes bairdi, Tanner crab. Hemocytes were analyzed after adult Tanner crabs were held for two years under continuous exposure to acidified ocean water. Total counts of hemocytes did not vary among control and experimental treatments; however, there were significantly greater number of dead, circulating hemocytes in crabs held at the lowest pH treatment. Phagocytosis of fluorescent microbeads by hemocytes was greatest at the lowest pH treatment. These results suggest that hemocytes were dying, likely by apoptosis, at a rate faster than upregulated phagocytosis was able to remove moribund cells from circulation at the lowest pH. Crab hemolymph pH (pHe) averaged 8.09 and did not vary among pH treatments. There was no significant difference in internal pH (pHi) within hyalinocytes among pH treatments and the mean pHi (7.26) was lower than the mean pHe. In contrast, there were significant differences among treatments in pHi of the semi-granular+granular cells. Control crabs had the highest mean semi-granular+granular pHi compared to the lowest pH treatment. As physiological hemocyte functions changed from ambient conditions, interactions with the number of eggs in the second clutch, percentage of viable eggs, and calcium concentration in the adult crab shell was observed. This suggested that the energetic costs of responding to ocean acidification and maintaining defense mechanisms in Tanner crab may divert energy from other physiological processes, such as reproduction.

Quantitative measurements of phytoplankton removal in a natural setting are needed to evaluate interactions between aquacultured bivalve populations and the surrounding environment. We report high-frequency (15-min) measurements of environmental variables relevant to oyster feeding and excretion at the inflow and outflow of an oyster nursery—floating upweller system (FLUPSY)—from June through September 2010 in the East Creek embayment, Peconic Estuary, NY. We demonstrated large variability in oyster particle clearance rate on short- (minutes to hours) to long-term (seasonal) timescales, including oyster responses to environmental variation, such as diurnal temperature and dissolved oxygen cycles, wind-driven turbulence, and the presence of harmful algae. A diel cycle in clearance rates calculated from whole FLUPSY measurements was apparent, with a maximum weight-specific clearance rate (CRW) of 2.21 L/h/g occurring around midnight, and a minimum CRW of 0.32 L/h/g at 0740 HR, coincident with the l...

A before-after-control-impact (BACI)-style experimental design was used to assess the short-term effects of hy drau lic clam dredging on the benthic community of a leased shellfish bed along the Connecticut coast of Long Island Sound, where hard clams Mercenaria mercenaria are cultivated. Three replicate samples were collected from 6 plots (0.67 ha each) on a weekly basis from May through October 2009. Dredging was conducted in early July in 3 of the 6 plots, while 3 control plots were not dredged. Pairwise comparisons and multivariate analyses of main effects and interactions indicated that ecological indices did not differ significantly between dredged and not dredged plots, although sample date and plot both had significant effects. Assemblages of individual species were associated with specific sediment types found within the clam bed. Natural seasonal settlement patterns and sediment grain size had a greater influence on the benthic community than discrete hydraulic clam dredging.

Selenium behavior in North San Francisco Bay, the largest estuary on the US Pacific coast, is simulated using a numerical model. This work builds upon a previously published application for simulating selenium in the bay and considers point and non-point sources, transport and mixing of selenium, transformations between different species of selenium, and biological uptake by phytoplankton, bivalves, and higher organisms. An evaluation of the calibrated model suggests that it is able to represent salinity, suspended material, and chlorophyll a under different flow conditions beyond the calibration period, through comparison against long-term data, and the distribution of different species of dissolved and particulate selenium. Model-calculated selenium concentrations in bivalves compared well to a long-term dataset, capturing the annual and seasonal variations over a 15-year period. In particular, the observed lower bivalve concentrations in the wet flow periods, corresponding to lower average particulate selenium concentrations in the bay, are well represented by the model, demonstrating the role of loading and hydrology in affecting clam concentrations. Simulated selenium concentrations in higher organisms including white sturgeon and greater scaup also compared well to the observed data in the bay. Finally, a simulation of changing riverine inflows into the bay that might occur as a consequence of proposed hydrologic modifications indicated significant increases in dissolved and particulate selenium concentrations in the bay. The modeling framework allows an examination of the relationship between selenium loads, variations in inflow, in-bay concentrations, and biota concentrations to support management for limiting wildlife impacts.

In Connecticut, cultivation of the northern quahog, or hard clam, Mercenaria mercenaria L., relies on hydraulic dredging. After harvesting, leased shellfish beds remain fallow for varying durations to facilitate natural reseeding and to allow small clams to reach harvestable size. The interval between dredging events, or harvest history, may influence benthic ecology and response of communities to further dredging. Two clam beds with different harvest histories, located near Milford, Connecticut, were studied from July through October 2012. These leased beds, fallowed for 3 and 8 years, respectively, were subdivided into two plots. One plot on each bed was commercially harvested in July while the other remained not dredged. Sediment sampling was conducted on alternate weeks using Smith MacIntyre grabs and sediment cores to compare ecology of benthic communities and chemistry of marine sediments on newly dredged and not dredged plots within leases. Main effects of lease (harvest history), dredging treatment (dredged versus not dredged plots), mean sediment phi size (ɸ), and season (sampling date) significantly affected benthic community structure. Newly settled bivalves, including early successional pioneer species, occurred in high abundance on 3-year beds. Diversity, evenness, and number of species were high on the 8-year beds, while abundance of individuals was low, more typical of later successional equilibrium communities. Differences among a subset of species on the 8-year beds were observed between dredged and not dredged plots while no community differences were observed between dredging treatments on 3-year beds. Significantly more individuals were observed on dredged versus not dredged plots on the 8-year beds only. Our results suggest that harvest frequency and/or sediment ɸ size may explain differences in benthic assemblages between leased areas with different dredging histories, while dredging had no measurable effect on sediment chemistry.

Sediment and porewater samples (1997–1999) were collected in the Northern Reach of the San Francisco Bay and Sacramento–San Joaquin Delta for determinations of sedimentary selenium and its chemical speciation. Total sedimentary selenium increased with depth, with approximately 50% of the sedimentary selenium as elemental selenium and 35% as organic selenide. Porewater total dissolved selenium increased with depth in the estuary and Delta, and fluxes out of the sediments were calculated at 0.01 and 0.06 nmol cm−2 year−1 for the estuary and Delta, respectively. Present-day sediment–water exchange of dissolved selenium and internal transformations cannot explain the observed increase in total sedimentary selenium with depth. However, mass balance calculations demonstrate that the increase in total selenium with depth may be linked to higher dissolved selenium concentrations in the water column in the 1980s, suggesting that the sediments could be used as historical recorders of selenium in the estuary.

The enzyme-labeled fluorescence (ELF-97®) substrate produces an insoluble, fluorescent yellow-green product at the site of alkaline-phosphatase (AP) activity. Fifteen coastal phytoplankton species were tested to determine if AP activity could be detected in phosphate- depleted media. All species tested, except Synechococcus bacillaris, expressed AP activity. Subsequently, threshold concentrations of soluble reactive phosphate (SRP) at which AP activity could be detected by ELF-97® were deter- mined for Chaetoceros neogracile, Chlorella autotrophica, Isochrysis sp., Prorocentrum minimum ,a ndTetraselmis chui. Microalgal species differed significantly in the SRP con- centration at which AP activity was first detectable (10.1- 16.4 µM), well above concentrations normally considered limiting for phytoplankton. P. minimum began to express AP activity at a higher SRP concentration than the other algal species; this may be attributable to a relatively high DNA/cell ratio in P. minimum, compared to the other phytoplankton. Thus, phytoplankton species may respond to phosphorus deficiency at high SRP concentrations.

Large-scale, open, microalgal feed cultures for hatchery and nursery production of marine invertebrates inevitably becomes contaminated with various microbes that can affect productivity and usability of the harvested biomass. In the Greenhouse for Research on Algal Mass Production Systems (GRAMPS) at the NMFS Laboratory in Milford, CT, cultures of Tetraselmis chui (PLY429) often become contaminated with a cyanobacterium; preliminary observations suggested that juvenile bay scallops, Argopecten irradians irradians showed reduced performance when the feed culture became contaminated with this cyanobacterium. We isolated a cyanobacterium from a contaminated culture of PLY429 and conducted a feeding study to determine if this isolate affects survival and growth of juvenile bay scallops, either alone or in combination with PLY429, thereby simulating feeding of a contaminated culture. Bay scallops were given a diet of either 100% PLY429, 50% PLY429 with 50% cyanobacteria, 100% cyanobacteria, or starve...

In aquaculture, large volumes of phytoplankton are often grown outdoors to reduce costs. However, growing microalgae in an environment not as well-controlled as in the laboratory can lead to unwanted phytoplankton, including cyanobacteria, contaminating a culture. A cyanobacterial contaminant was isolated from an outdoor culture of Tetraselmis chui (PLY429) at the Milford Laboratory. This study investigated the growth of PLY429 and the cyanobacterium in pure cultures and a mixed culture in a pH range of 6.5–9.5. The division of PLY429 was greater at a pH range of 7.0–8.0; whereas, for the cyanobacterium, higher growth was obtained at pH 8.0–9.0. Results from combined cultures of PLY429 and the cyanobacterium grown at various pHs indicated that maintaining pH near 7.1 yields higher growth of PLY429 than those of the cyanobacterium. These findings suggest that controlling pH may reduce the population of a cyanobacterial contaminant in an aquaculture feed culture.

Juvenile bay scallops (7.2-26.4 mm) were exposed for 72 h to different concentrations of un-ionized ammonia, nitrite, or nitrate. Using the Trimmed Spearman Karber method, 50% lethal concentrations (LC(50)) and 95% confidence limits were calculated individually for each. Un-ionized ammonia concentrations above 1.0 mg N-NH(3)/L resulted in 100% scallop mortality within 72 h. The 72-h LC(50) for un-ionized ammonia was calculated at 0.43 mg N/L. At nitrite concentrations of 800 mg N/L or higher 100% mortality was observed. The 72-h LC(50) for nitrite was calculated at 345 mg N/L. Nitrate was the least toxic, with 100% mortality observed at a concentration of 5000 mg N/L. The calculated nitrate 72-h LC(50) was 4453 mg N/L. Our results indicate that un-ionized ammonia is the most lethal nitrogenous waste component to bay scallops.

Increasing amounts of atmospheric carbon dioxide (CO2) from human industrial activities are causing changes in global ocean carbonate chemistry, resulting in a reduction in pH, a process termed “ocean acidification.” It is important to determine which species are sensitive to elevated levels of CO2 because of potential impacts to ecosystems, marine resources, biodiversity, food webs, populations, and effects on economies. Previous studies with marine fish have documented that exposure to elevated levels of CO2 caused increased growth and larger otoliths in some species. This study was conducted to determine whether the elevated partial pressure of CO2 (pCO2) would have an effect on growth, otolith (ear bone) condition, survival, or the skeleton of juvenile scup, Stenotomus chrysops, a species that supports both important commercial and recreational fisheries. Elevated levels of pCO2 (1200–2600 μatm) had no statistically significant effect on growth, survival, or otolith condition after 8 weeks of rearing. Field data show that in Long Island Sound, where scup spawn, in situ levels of pCO2 are already at levels ranging from 689 to 1828 μatm due to primary productivity, microbial activity, and anthropogenic inputs. These results demonstrate that ocean acidification is not likely to cause adverse effects on the growth and survivability of every species of marine fish. X‐ray analysis of the fish revealed a slightly higher incidence of hyperossification in the vertebrae of a few scup from the highest treatments compared to fish from the control treatments. Our results show that juvenile scup are tolerant to increases in seawater pCO2, possibly due to conditions this species encounters in their naturally variable environment and their well‐developed pH control mechanisms.

Light, nutrients, temperature, pH, and salinity are important factors in controlling the growth of phytoplankton and bacterioplankton. Supply of key nutrients to these communities can result in mutualistic or competitive relationships between bacterioplankton and phytoplankton. In this study, we investigated growth and uptake of nutrients by the marine prasinophyte flagellate Tetraselmis chui (strain PLY429) in the presence and absence of a community of bacterioplankton at two pH levels. Growth of PLY429 and total nutrient uptake were calculated for each treatment. The addition of bacterioplankton resulted in lower growth rates of PLY429, but the removal of ammonium was greater in those cultures with bacterioplankton present. The division rate of PLY429 was affected by pH; however, pH changes did not result in different uptake rates of nitrate, ammonium, or phosphate by the mixed algal and bacterial assemblage. These findings suggest that bacterioplankton and phytoplankton were competing for ammonium and that a lower pH resulted in more rapid algal growth.

A biogeochemical model was developed to simulate salinity, total suspended material, phytoplankton biomass, dissolved selenium concentrations (selenite, selenate, and organic selenide), and particulate selenium concentrations (selenite + selenate, elemental selenium, and organic selenide) in the San Francisco Bay estuary. Model-generated estuarine profiles of total dissolved selenium reproduced observed estuarine profiles at a confidence interval of 91–99% for 8 different years under various environmental conditions. The model accurately reproduced the observed dissolved speciation at confidence intervals of 81–98% for selenite, 72–91% for selenate, and 60–96% for organic selenide. For particulate selenium, model-simulated estuarine profiles duplicated the observed behavior of total particulate selenium (76–93%), elemental selenium (80–97%), selenite + selenate (77–82%), and organic selenide (70–83%). Discrepancies between model simulations and the observed data provided insights into the estuarine biogeochemical cycle of selenium that were largely unknown (e.g., adsorption/desorption). Forecasting simulations investigated how an increase in the discharge from the San Joaquin River and varying refinery inputs affect total dissolved and particulate selenium within the estuary. These model runs indicate that during high river flows the refinery signal is undetectable, but when river flow is low (70day residence time) total particle-associated selenium concentrations can increase to .2 m gg 21. Increasing the San Joaquin River discharge could also increase the total particle-associated selenium concentrations to .1 m gg 21. For both forecasting simulations, particle-associated selenium was predicted to be higher than current conditions and reached levels where selenium could accumulate in the estuarine food web.

Light intensity, day length, and nutrient concentrations are important factors regulating the growth of phytoplankton. To reduce culturing costs, natural sunlight and greenhouses can be used to minimize the amount of artificial light needed for algal growth. However, with natural sunlight there is much more variation in the light intensity and the day length than what would be found in a controlled laboratory environment. This study investigated how different light intensities and day lengths affect the growth and nutrient uptake of Tetraselmis chui (strain PLY429)—an algal strain used widely as an aquaculture feed. PLY429 was grown aseptically for 28 days under three different light intensities (220, 110, and 73 μEinst. m −2 s −1 ) and four different light:dark cycles (24:0, 16:8; 12:12; 8:16). Growth and net nutrient-uptake rates for PLY429 were calculated for each treatment. Longer day length and higher light intensities resulted in higher biomass production and complete utilization of nitrate and phosphate in less time, as compared with shorter days and lower intensities. PLY429 cultures that were exposed to only 8 h of light had the slowest growth and utilization of nutrients. These findings suggest that day length is important in determining growth and nutrient uptake in PLY429; at a latitude of 41°N, artificial light will need to be added to algal cultures in a greenhouse to increase both day length and total daily light input.