49 results on '"Shama, N."'
Search Results
2. Chronic, but not sub-chronic, stress increases binge-like alcohol consumption in male and female c57BL6 mice
- Author
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William McCarthy, Shama N. Huq, Kristen Allen, Lindsay Scally, Avelina Petri, Madeline Wujek, and Benjamin D. Sachs
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stress ,alcohol ,nucleus accumbens ,sex differences ,mouse ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Stress is known to contribute to mental illness and alcohol use disorders, which are highly prevalent and lead to considerable disability. These stress-related disorders are characterized by significant sex differences, which remain poorly understood. Preclinical research comparing the effects of stress in males and females has the potential to provide new insights into the neurobiology of these conditions. The current study compared the effects of chronic and sub-chronic exposure to variable environmental stressors on binge-like alcohol consumption using the drinking-in-the-dark model in male and female c57BL6 mice. The results reveal that chronic, but not sub-chronic, exposure to variable stress increases alcohol intake in both sexes. Stress-induced alterations in gene expression were also compared in the nucleus accumbens, a brain region widely known to play a key role in stress susceptibility and reward processing. Real-time PCR data indicate that chronic, but not sub-chronic, environmental stress leads to downregulation of adenosine 2A (A2A) receptor mRNA. By contrast, sub-chronic stress increased CREB expression, while chronic stress did not. Several sex differences in the effects of stress on gene expression were also noted. Our results demonstrate that reductions in A2A receptor mRNA in the nucleus accumbens are associated with the increased binge drinking of chronically stressed animals, but future work will be required to determine the functional importance of this gene expression change. Continuing to define the molecular alterations associated with stress-induced increases in alcohol intake has the potential to provide insights into the development and progression of stress-related disorders.
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- 2022
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- View/download PDF
3. A Novel User Pairing Scheme for Functional Decode-and-Forward Multi-way Relay Network
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Islam, Shama N., Durrani, Salman, and Sadeghi, Parastoo
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Computer Science - Information Theory ,94A05, 94B70 - Abstract
In this paper, we consider a functional decode and forward (FDF) multi-way relay network (MWRN) where a common user facilitates each user in the network to obtain messages from all other users. We propose a novel user pairing scheme, which is based on the principle of selecting a common user with the best average channel gain. This allows the user with the best channel conditions to contribute to the overall system performance. Assuming lattice code based transmissions, we derive upper bounds on the average common rate and the average sum rate with the proposed pairing scheme. Considering M-ary quadrature amplitude modulation with square constellation as a special case of lattice code transmission, we derive asymptotic average symbol error rate (SER) of the MWRN. We show that in terms of the achievable rates, the proposed pairing scheme outperforms the existing pairing schemes under a wide range of channel scenarios. The proposed pairing scheme also has lower average SER compared to existing schemes. We show that overall, the MWRN performance with the proposed pairing scheme is more robust, compared to existing pairing schemes, especially under worst case channel conditions when majority of users have poor average channel gains., Comment: 30 pages, 6 figures, submitted for journal publication
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- 2014
4. Error Performance Analysis of DF and AF Multi-way Relay Networks with BPSK Modulation
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Islam, Shama N., Sadeghi, Parastoo, and Durrani, Salman
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Computer Science - Information Theory ,94A05 - Abstract
In this paper, we analyze the error performance of decode and forward (DF) and amplify and forward (AF) multi-way relay networks (MWRN). We consider a MWRN with pair-wise data exchange protocol using binary phase shift keying (BPSK) modulation in both additive white Gaussian noise (AWGN) and Rayleigh fading channels. We quantify the possible error events in an $L$-user DF or AF MWRN and derive accurate asymptotic bounds on the probability for the general case that a user incorrectly decodes the messages of exactly $k$ ($k\in[1,L-1]$) users. We show that at high signal-to-noise ratio (SNR), the higher order error events ($k\geq 3$) are less probable in AF MWRN, but all error events are equally probable in a DF MWRN. We derive the average BER of a user in a DF or AF MWRN in both AWGN and Rayleigh fading channels under high SNR conditions. Simulation results validate the correctness of the derived expressions. Our results show that at medium to high SNR, DF MWRN provides better error performance than AF MWRN in AWGN channels even with a large number of users (for example, L=100). Whereas, AF MWRN outperforms DF MWRN in Rayleigh fading channels even for much smaller number of users (for example, $L > 10$)., Comment: accepted in IET Communications
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- 2013
5. The Effects of Brain Serotonin Deficiency on Responses to High Fat Diet in Female Mice
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Shama N. Huq, Allison K. Warner, Kerry Buckhaults, and Benjamin D. Sachs
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serotonin ,obesity ,anxiety ,hippocampus ,mouse model ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Clinical studies have reported an increased risk of depression and anxiety disorders among individuals who are obese, and women are more likely than men to suffer from depression, anxiety, and obesity. However, the effects of obesity-promoting diets on depression- and anxiety-like behavior remain controversial. A recent study from our group used the tryptophan hydroxylase 2 (R439H) knock-in mouse line to evaluate the impact of genetic brain serotonin (5-HT) deficiency on behavioral responses to high fat diet (HFD) in male mice. That study indicated that chronic exposure to HFD induced pro-anxiety-like effects in the open field test and antidepressant-like effects in the forced swim test in wild-type males. Interestingly, the antidepressant-like effect of HFD, but not the anxiogenic effect, was blocked by brain 5-HT deficiency in males. The current work sought to repeat these studies in females. Our new data suggest that females are less susceptible than males to HFD-induced weight gain and HFD-induced alterations in behavior. In addition, the effects of chronic HFD on the expression of inflammation-related genes in the hippocampus were markedly different in females than we had previously reported in males, and HFD was shown to impact the expression of several inflammation-related genes in a genotype-dependent manner. Together, our findings highlight the importance of brain 5-HT and sex in regulating behavioral and molecular responses to HFD. Our results may have important implications for our understanding of the clinically observed sex differences in the consequences of obesity.
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- 2021
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6. Impact of optimal false data injection attacks on local energy trading in a residential microgrid
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Shama N. Islam, M.A. Mahmud, and A.M.T. Oo
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Information technology ,T58.5-58.64 - Abstract
This paper illustrates the vulnerability of local energy trading to false data injection attacks in a smart residential microgrid and demonstrates the impact of such attacks on the financial benefits earned by the participants. In a local energy market, the attacker can overhear the energy generation and consumption patterns of legitimate participants and based on this, optimize its attack signal to achieve maximum benefits either as a buyer/seller, while balancing the supply–demand to remain undetected. For such a system, we have formulated an optimization problem at the attacker, to extract the maximum possible benefits from legitimate participants. The numerical results show that the false data injection from the attacker causes significant losses in the benefits of legitimate participants, up to a reduction of 94% in certain hours. Keywords: Local energy trading, Microgrid, False data injection, Optimum attack, Smart grid
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- 2018
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7. Multi-group multi-way relaying with multi-stage non-regenerative relay stations
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International Conference on Telecommunications (22nd : 2015 : Sydney, N.S.W.), Islam, Shama N, and Durrani, Salman
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- 2015
8. Brain serotonin deficiency and fluoxetine lead to sex-specific effects on binge-like food consumption in mice
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Melinda D. Karth, Brittany J. Baugher, Sophia A. Pellechia, Shama N. Huq, Allison K. Warner, Michelle M. Karth, and Benjamin D. Sachs
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Pharmacology - Published
- 2022
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9. Chronic, but not sub-chronic, stress increases binge-like alcohol consumption in male and female c57BL6 mice
- Author
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McCarthy, William, Huq, Shama N., Allen, Kristen, Scally, Lindsay, Petri, Avelina, Wujek, Madeline, and Sachs, Benjamin D.
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Behavioral Neuroscience ,Neuropsychology and Physiological Psychology ,Cognitive Neuroscience - Abstract
Stress is known to contribute to mental illness and alcohol use disorders, which are highly prevalent and lead to considerable disability. These stress-related disorders are characterized by significant sex differences, which remain poorly understood. Preclinical research comparing the effects of stress in males and females has the potential to provide new insights into the neurobiology of these conditions. The current study compared the effects of chronic and sub-chronic exposure to variable environmental stressors on binge-like alcohol consumption using the drinking-in-the-dark model in male and female c57BL6 mice. The results reveal that chronic, but not sub-chronic, exposure to variable stress increases alcohol intake in both sexes. Stress-induced alterations in gene expression were also compared in the nucleus accumbens, a brain region widely known to play a key role in stress susceptibility and reward processing. Real-time PCR data indicate that chronic, but not sub-chronic, environmental stress leads to downregulation of adenosine 2A (A2A) receptor mRNA. By contrast, sub-chronic stress increased CREB expression, while chronic stress did not. Several sex differences in the effects of stress on gene expression were also noted. Our results demonstrate that reductions in A2A receptor mRNA in the nucleus accumbens are associated with the increased binge drinking of chronically stressed animals, but future work will be required to determine the functional importance of this gene expression change. Continuing to define the molecular alterations associated with stress-induced increases in alcohol intake has the potential to provide insights into the development and progression of stress-related disorders.
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- 2022
- Full Text
- View/download PDF
10. Sub-chronic stress induces similar behavioral effects in male and female mice despite sex-specific molecular adaptations in the nucleus accumbens
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Baugher, Brittany J., primary, Buckhaults, Kerry, additional, Case, Jordan, additional, Sullivan, Abigail, additional, Huq, Shama N., additional, and Sachs, Benjamin D., additional
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- 2022
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11. The Effects of Brain Serotonin Deficiency on Responses to High Fat Diet in Female Mice
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Huq, Shama N., primary, Warner, Allison K., additional, Buckhaults, Kerry, additional, and Sachs, Benjamin D., additional
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- 2021
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12. Experimental Investigation and Artificial Neural Network-Based Modeling of Batch Reduction of Hexavalent Chromium by Immobilized Cells of Newly Isolated Strain of Chromium-Resistant Bacteria
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Shetty K., Vidya, L., Namitha, Rao, Shama N., and M., Narayani
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- 2012
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13. Sub-chronic stress induces similar behavioral effects in male and female mice despite sex-specific molecular adaptations in the nucleus accumbens
- Author
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Brittany J, Baugher, Kerry, Buckhaults, Jordan, Case, Abigail, Sullivan, Shama N, Huq, and Benjamin D, Sachs
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Male ,Mice ,Sex Characteristics ,Behavioral Neuroscience ,Animals ,Humans ,Female ,Anxiety ,Anxiety Disorders ,Nucleus Accumbens ,Stress, Psychological - Abstract
Women are more likely than men to suffer from major depression and anxiety disorders, a fact that is thought to depend in part on sex differences in stress susceptibility. Consistent with this, several preclinical stress paradigms have been reported to exert differential effects in males vs. females. For example, several studies have reported that female rodents are susceptible to a subset of depression- and anxiety-like behaviors induced by six days of stress exposure while males remain largely resilient. The current study sought to evaluate the generalizability of this increased vulnerability of female mice to sub-chronic stressors by examining potential sex differences in response to a new five-day stress paradigm. In addition to measuring behavior, the current work also evaluated the effects of stress on the expression of several genes in the nucleus accumbens that have been suggested to underlie sex differences in behavioral responses to sub-chronic stress. The current results indicate that males and females exhibit mostly similar behavioral alterations after exposure to this new stress model, but several sex-specific molecular alterations were observed in the nucleus accumbens following stress. Overall, our data indicate that females do not exhibit a general increase in susceptibility to 'depression-' and 'anxiety-like' behaviors induced by sub-chronic stressors, and they could reflect an example of sexual convergence in which similar behavioral alterations occur in males and females despite sex-specific molecular changes.
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- 2022
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14. Impact of optimal false data injection attacks on local energy trading in a residential microgrid
- Author
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Islam, Shama N., Mahmud, M. A., Oo, A. M. T., Islam, Shama N., Mahmud, M. A., and Oo, A. M. T.
- Abstract
This paper illustrates the vulnerability of local energy trading to false data injection attacks in a smart residential microgrid and demonstrates the impact of such attacks on the financial benefits earned by the participants. In a local energy market, the attacker can overhear the energy generation and consumption patterns of legitimate participants and based on this, optimize its attack signal to achieve maximum benefits either as a buyer/seller, while balancing the supply–demand to remain undetected. For such a system, we have formulated an optimization problem at the attacker, to extract the maximum possible benefits from legitimate participants. The numerical results show that the false data injection from the attacker causes significant losses in the benefits of legitimate participants, up to a reduction of 94% in certain hours.
- Published
- 2018
15. Impact of optimal false data injection attacks on local energy trading in a residential microgrid
- Author
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Islam, Shama N., primary, Mahmud, M.A., additional, and Oo, A.M.T., additional
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- 2018
- Full Text
- View/download PDF
16. Validated and longitudinally stable asthma phenotypes based on cluster analysis of the ADEPT study
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Loza, M. J., Djukanovic, R., Chung, K. F., Horowitz, D., Ma, K., Branigan, P., Barnathan, E. S., Susulic, V. S., Silkoff, P. E., Sterk, P. J., Baribaud, F., Strambu, I., Laviolette, M., Singh, D., Fitzgerald, J. M., Lam, S., Kelsen, S., Eich, A., Ludwig-Sengpiel, A., Hupp, G. C., Backer, V., Porsbjerg, C., Girodet, P. O., Berger, P., Leigh, R., Kline, J., Dransfield, M., Calhoun, W., Hussaini, A., Khatri, S., Chanez, P., Ian, A., Fleming Louis, J., David, G., Sile, H., Scott, K., Sally, M., Andrea, M., Stelios, P., Christos, R., Kirsty, R., Kai, S., Coen, W., Xian, Y., Nora, A., Ariane, W., Kees, v. D., Marianne, v. d. P., Wim, v. A., Sterk Peter, J., Barbara, S., Lara, R., Rene, L., Paul, B., Elisabeth, B., Koos, Z., Tamara, D., Simone, H., Annemiek, D., Pieter-Paul, H., Saeeda, L. -L., Hassan, A., Betrand, D. M., Diane, L., Antonios, A., Kjell, A., Charles, A., Philipp, B., Per, B., David, B., Sven-Erik, D., Ingrid, D., Cristina, G., James Anna, J., Roelinde, M., Shama, N., Anne, P., Stacey, R., Wheelock Craig, E., Hector, G., Maciej, K., Johan, K., Marcus, S., Bansal Aruna, T., Frederic, B., Navin, R., An, B., Inge, D. L., Martine, R., Behndig Annelie, F., Thomas, S., Jorge, B., De Jorge, A., Ann, B., Gunilla, H., Nordlund, Bjorn, Jon, K., Wilhelm, Z., Alix, B., Jorgen, O., van Marleen, G., de Maria, G. V., Lars, L., Ulf, N., Jeannette, B., Boedigheimer Michel, J., Richard, H., Xugang, H., Wen, Y., Hans, B., Klaus, B., Jonathan, T., Nadja, V., Grazyna, B., Jacek, M., Joost, B., Ben, N., Anthony, P., Doroteya, S., Armin, B., Jens, H., Norbert, K., Dominic, B., Schofield James, P. R., Skipp Paul, J., Leon, C., Bob, T., Caruso, Massimo, Rocha Joao Pedro, C. P., Julaiha, G., Andrew, M. -G., Adesimbo, S., Amphun, C., Romanas, C., Caroline, M., Pascal, C., Courtney, C., Jessica, E., Val, H., Kennington Erika, J., Leanne, M., Malayka, R. -A., Leanne, R., Jessica, S., Jenny, V., Samantha, W., Breda, F., Amanda, R., David, S., Chris, C., David, M., John, R., Sousa Ana, R., Julie, C., D'Amico, Arnaldo, Giorgio, P., Marco, S., Barbro, D., Ann-Sofie, L., Pim, B., Patrick, D., Kamran, T., Clair, B., Kerry, G., Aleksandra, D., Neil, F., Trevor, G., Scott, W., Rosalia, E., Davide, C., Magnus, E., Veit, E., Damijan, E., Klaus, F., Katja, N., Corinna, S., Frans, W., Kathrin, R., Kluglich, Matthias, Fowler Stephen, J., Murray Clare, S., Jorgen, V., Ashley, W., Urs, F., Martina, G., Gabriella, G., Ildiko, H., Marton, S., Lilla, T., Zsoka, W., Thomas, G., Neil, G., Yi-ke, G., John, H., Sian, W., Elisabeth, H., Nikos, L., Karin, S., Lorraine, H., Lisa, M., Jane, M., Sandy, P., Emma, R., Caroline, S., Tim, H., Uruj, H., Cecile, H., Matthews John, G., Peter, H., Graham, R., Juliette, K., Dyson, K., Hugo, K., Anton, V., Richard, K., Alan, K., Shaw Dominick, E., Maxim, K., Linn, K., Bart, L., Sarah, M., Pippa, P., Alexander, M., Maria, M., Peter, N., Montse, M., Philip, M., Paolo, M., Nadia, M., Giuseppe, S., Salvatore, V., Antonio, P., Laurie, P., Susanna, P., Ioannis, P., Anthony, R., Wolfgang, S., Kristiane, W., Florian, S., Smith Katherine, M., Paivi, S., John-Olof, T., von Christophe, G., Jonathan, W., Wilson Susan, J., Elizabeth, Y., AII - Amsterdam institute for Infection and Immunity, Pulmonology, Graduate School, Experimental Immunology, APH - Amsterdam Public Health, Epidemiology and Data Science, Medical Research Council (MRC), Commission of the European Communities, and National Institute for Health Research
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Oncology ,Time Factors ,AIRWAY INFLAMMATION ,Respiratory System ,Vital Capacity ,Disease ,Severity of Illness Index ,0302 clinical medicine ,RESEARCH-PROGRAM ,Forced Expiratory Volume ,Observational study ,Eosinophilic ,Medicine and Health Sciences ,030212 general & internal medicine ,Longitudinal Studies ,Lung ,SEVERE EOSINOPHILIC ASTHMA ,INDUCED SPUTUM ,Interleukin-13 ,Biological markers ,Adept ,Prognosis ,ADEPT (Airways Disease Endotyping for Personalized Therapeutics) and U-BIOPRED (Unbiased Biomarkers for the Prediction of Respiratory Disease Outcome Consortium) investigators ,Phenotype ,3. Good health ,Cohort ,Biomarker (medicine) ,Inflammation Mediators ,Life Sciences & Biomedicine ,medicine.drug ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Genotype ,QUESTIONNAIRE ,610 Medicine & health ,1102 Cardiovascular Medicine And Haematology ,03 medical and health sciences ,Th2 Cells ,Cluster analysis ,Fuzzy Logic ,Predictive Value of Tests ,Internal medicine ,medicine ,Humans ,Asthma ,Science & Technology ,IDENTIFICATION ,business.industry ,MEPOLIZUMAB ,Research ,Biology and Life Sciences ,Reproducibility of Results ,1103 Clinical Sciences ,medicine.disease ,Cross-Sectional Studies ,030228 respiratory system ,Gene Expression Regulation ,Immunology ,Interleukin-4 ,business ,Mepolizumab - Abstract
Background Asthma is a disease of varying severity and differing disease mechanisms. To date, studies aimed at stratifying asthma into clinically useful phenotypes have produced a number of phenotypes that have yet to be assessed for stability and to be validated in independent cohorts. The aim of this study was to define and validate, for the first time ever, clinically driven asthma phenotypes using two independent, severe asthma cohorts: ADEPT and U-BIOPRED. Methods Fuzzy partition-around-medoid clustering was performed on pre-specified data from the ADEPT participants (n = 156) and independently on data from a subset of U-BIOPRED asthma participants (n = 82) for whom the same variables were available. Models for cluster classification probabilities were derived and applied to the 12-month longitudinal ADEPT data and to a larger subset of the U-BIOPRED asthma dataset (n = 397). High and low type-2 inflammation phenotypes were defined as high or low Th2 activity, indicated by endobronchial biopsies gene expression changes downstream of IL-4 or IL-13. Results Four phenotypes were identified in the ADEPT (training) cohort, with distinct clinical and biomarker profiles. Phenotype 1 was “mild, good lung function, early onset”, with a low-inflammatory, predominantly Type-2, phenotype. Phenotype 2 had a “moderate, hyper-responsive, eosinophilic” phenotype, with moderate asthma control, mild airflow obstruction and predominant Type-2 inflammation. Phenotype 3 had a “mixed severity, predominantly fixed obstructive, non-eosinophilic and neutrophilic” phenotype, with moderate asthma control and low Type-2 inflammation. Phenotype 4 had a “severe uncontrolled, severe reversible obstruction, mixed granulocytic” phenotype, with moderate Type-2 inflammation. These phenotypes had good longitudinal stability in the ADEPT cohort. They were reproduced and demonstrated high classification probability in two subsets of the U-BIOPRED asthma cohort. Conclusions Focusing on the biology of the four clinical independently-validated easy-to-assess ADEPT asthma phenotypes will help understanding the unmet need and will aid in developing tailored therapies. Trial registration NCT01274507 (ADEPT), registered October 28, 2010 and NCT01982162 (U-BIOPRED), registered October 30, 2013. Electronic supplementary material The online version of this article (doi:10.1186/s12931-016-0482-9) contains supplementary material, which is available to authorized users.
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- 2016
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17. Efficient production of L-ribose with a recombinant Escherichia coli biocatalyst
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Woodyer, Ryan D., Wymer, Nathan J., Racine, F. Michael, Khan, Shama N., and Saha, Badal C.
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Escherichia coli -- Genetic aspects ,Escherichia coli -- Environmental aspects ,Ribose -- Chemical properties ,Biological sciences - Abstract
A new synthetic platform is described with potential for the production of several rare sugars, with L-ribose as the model target. This system has represented an improved method for the large-scale production of L-ribose.
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- 2008
18. Experimental Investigation and Artificial Neural Network-Based Modeling of Batch Reduction of Hexavalent Chromium by Immobilized Cells of Newly Isolated Strain of Chromium-Resistant Bacteria
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M. Narayani, Shama N. Rao, K. Vidya Shetty, and L Namitha
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Environmental Engineering ,Chromatography ,Strain (chemistry) ,biology ,Chemistry ,Cell carrier ,Ecological Modeling ,chemistry.chemical_element ,biology.organism_classification ,Pollution ,Resistant bacteria ,chemistry.chemical_compound ,Chromium ,Environmental Chemistry ,Acinetobacter sp ,Hexavalent chromium ,Inhibitory effect ,Bacteria ,Water Science and Technology ,Nuclear chemistry - Abstract
The batch bioreduction of Cr(VI) by the cells of newly isolated chromium-resistant Acinetobacter sp. bacteria, immobilized on glass beads and Ca-alginate beads, was investigated. The rate of reduction and percentage reduction of Cr(VI) decrease with the increase in initial Cr(VI) concentration, indicating the inhibitory effect of Cr(VI). Efficiency of bioreduction can be improved by increasing the bioparticle loading or the initial biomass loading. Glass bioparticles have shown better performance as compared to Ca-alginate bioparticles in terms of batch Cr(VI) reduction achieved and the rate of reduction. Glass beads may be considered as better cell carrier particles for immobilization as compared to Ca-alginate beads. Around 90% reduction of 80 ppm Cr(VI) could be achieved after 24 h with initial biomass loading of 14.6 mg on glass beads. Artificial neural network-based models are developed for prediction of batch Cr(VI) bioreduction using the cells immobilized on glass and Ca-alginate beads.
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- 2011
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19. SER analysis of multi-way relay networks with M-QAM modulation in the presence of imperfect channel estimation
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Islam, Shama N., primary, Durrani, Salman, additional, and Sadeghi, Parastoo, additional
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- 2016
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20. Multi-pair two-way relay networks: Interference management using lattice codes and amplify and compute relaying
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Islam, Shama N., primary, Durrani, Salman, additional, and Sadeghi, Parastoo, additional
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- 2016
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21. A novel user pairing scheme for functional decode-and-forward multi-way relay network
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Islam, Shama N., primary, Durrani, Salman, additional, and Sadeghi, Parastoo, additional
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- 2015
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22. Optimal User Pairing to Improve the Sum Rate of a Pairwise AF Multi-Way Relay Network
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Islam, Shama N., primary
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- 2015
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23. Multi-group multi-way relaying with multi-stage non-regenerative relay stations
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Islam, Shama N., primary and Durrani, Salman, additional
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- 2015
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24. Efficient Production of l-Ribose with a Recombinant Escherichia coli Biocatalyst▿
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Ryan Woodyer, F. Michael Racine, Shama N. Khan, Badal C. Saha, and Nathan Wymer
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Glycerol ,Polymers ,Ribose ,Coenzymes ,Gene Expression ,Dehydrogenase ,medicine.disease_cause ,Ribitol ,Applied Microbiology and Biotechnology ,chemistry.chemical_compound ,Chlorides ,medicine ,Escherichia coli ,Cloning, Molecular ,Apium ,Ecology ,biology ,Apium graveolens ,biology.organism_classification ,Physiology and Biotechnology ,Enterobacteriaceae ,Recombinant Proteins ,chemistry ,Biochemistry ,Biocatalysis ,Zinc Compounds ,Food Science ,Biotechnology ,Sugar Alcohol Dehydrogenases - Abstract
Optically pure carbohydrates are important intermediates for the preparation of pharmaceutical, food, and agrochemical products (2, 4, 15, 22). In particular, these carbohydrates are increasingly important in biochemical research and in development of new pharmaceutical therapies since carbohydrates are involved in cellular recognition, signaling, extra- and intracellular targeting, and even the development of disease states (1, 2, 7, 22, 27). Access to consistent, optically pure, and inexpensive carbohydrate starting materials is critical to the continuation of this research. The unique NAD-dependent mannitol-1-dehydrogenase (MDH) from Apium graveolens (33-38, 44) acts on the 1 position of d-mannitol, producing d-mannose (Fig. (Fig.1),1), in contrast to the more common 2-mannitol dehydrogenase, which interconverts d-mannitol and d-fructose (37). This novel regioselectivity combined with stringent stereoselectivity at the 2 position allows the MDH enzyme from A. graveolens to catalyze several interesting conversions, including the conversion of ribitol to l-ribose (Fig. (Fig.1),1), the conversion of d-sorbitol to l-gulose, and the conversion of galactitol to l-galactose (33). Sugars with the l configuration are often available only in limited amounts or at a high cost. To address these availability and economic concerns, utilization of MDH from A. graveolens is proposed. FIG. 1. MDH-catalyzed reactions. The MDH from A. graveolens catalyzes the unique conversion of d-mannitol to d-mannose and, similarly, the conversion of ribitol to l-ribose. The 2R stereochemistry is conserved for all of the MDH-catalyzed conversions. For this study, l-ribose was chosen as a model target since it is the potential starting material for many l-nucleoside-based pharmaceutical compounds, including Clevudine, Tyzeka, Valtorcitabine, Elvucitabine, and Epivir (12, 14, 40). The interest in l-nucleosides has increased, as noted in Table Table1,1, which shows several l-nucleoside-based pharmaceutical compounds recently approved or presently in clinical trials, creating a demand for l-ribose. Although several methods for the production of l-ribose have been described (19, 21, 31, 39), no method has provided an efficient and inexpensive source of l-ribose, as apparent from the increase in the bulk price (estimated at $1,000/kg, a price too high for intermediate-stage development) (29). With l-ribose selected as the model target for this platform technology, we created a novel recombinant Escherichia coli strain using a gene encoding the A. graveolens MDH. The recombinant MDH was characterized, and a process for whole-cell conversion was developed and improved, followed by liter scale production and isolation of l-ribose. TABLE 1. Examples of l-nucleoside-based pharmaceuticals
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- 2008
25. Optimum power allocation for sum rate improvement in AF multi-way relay networks
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Islam, Shama N., primary, Durrani, Salman, additional, and Sadeghi, Parastoo, additional
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- 2014
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26. A novel pairing scheme to reduce error propagation in an amplify and forward multi-way relay network
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Islam, Shama N., primary, Sadeghi, Parastoo, additional, and Durrani, Salman, additional
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- 2014
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27. SEQUENCE ANALYSIS AND HOMOLOGY MODELING OF SHANK3 PROTEIN INVOLVED IN AUTISM
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Shama N. Mujawar, VAIBHAV V. KANDALE, PREETI J. WELASLY, Shama N. Mujawar, VAIBHAV V. KANDALE, and PREETI J. WELASLY
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- 2013
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28. Joint user decoding: A technique to enhance the benefits of coding in a multi-way relay channel
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Islam, Shama N., primary and Sadeghi, Parastoo, additional
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- 2012
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29. Joint decoding: Extracting the correlation among user pairs in a multi-way relay channel
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Islam, Shama N., primary and Sadeghi, Parastoo, additional
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- 2012
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30. Error propagation in a multi-way relay channel
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Islam, Shama N., primary and Sadeghi, Parastoo, additional
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- 2011
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31. Experimental Investigation and Artificial Neural Network-Based Modeling of Batch Reduction of Hexavalent Chromium by Immobilized Cells of Newly Isolated Strain of Chromium-Resistant Bacteria
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Shetty K., Vidya, primary, L., Namitha, additional, Rao, Shama N., additional, and M., Narayani, additional
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- 2011
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32. A single polarization fiber with ultra flattened dispersion and high birefringence
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Islam, Shama N., primary, Saha, Arunodoy, additional, and Alam, M. Shah, additional
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- 2010
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33. Impact of mixed pedagogy on engineering education
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Aziz, Asma, Islam, Shama N., Aziz, Asma, and Islam, Shama N.
- Abstract
Aziz, A., & Islam, S. N. (2021). Impact of mixed pedagogy on engineering education. IEEE Transactions on Education. Advance online publication. https://doi.org/10.1109/TE.2021.3088808
34. Unraveling Heart Inflammation: Recurrent Myopericarditis Caused by Coxsackie A Virus-A Case Report.
- Author
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Maliha M, Satish V, Chi KY, Shama N, Halder S, Oishy SM, Kharawala A, Varrias D, and Fallaice RT
- Abstract
Acute recurrent myopericarditis, characterized by the occurrence of a new myopericarditis event following a symptom-free interval of 4-6 weeks, is relatively rare lacking definitive guidelines for management. Understanding its prevalence, causes, and optimal management is challenging due to limited data and insufficient guidelines. This case outlines the diagnostic work-up and different management modalities for recurrent myopericarditis. A 44-year-old African American man with a past medical history of myopericarditis a year ago presented with fever and chest pain for 4 days. The patient was found to have elevated troponin, CRP, and ESR; pericardial effusion along with a Coxsackie A virus titer of 1:800, suggestive of Coxsackie A virus-induced recurrent myopericarditis. The patient responded well to colchicine and a tapering dose of ibuprofen, achieving significant resolution in the pericardial effusion. Recurrent myopericarditis caused by Coxsackie A virus is a relatively rare phenomenon. New onset myopericarditis can be caused by various factors such as infections, autoimmune disorders, neoplasms, metabolic issues, trauma, and drugs, with recurrence rates of 15%-50% in pericarditis patients. Coxsackie A virus is an important and rare etiology of recurrent myopericarditis due to its unique immune evasive traits. The treatment modalities guided by definitive guidelines for recurrent pericarditis can be applied in recurrent myopericarditis with significant resolution of symptoms. Although there are no specific guidelines for managing recurrent myopericarditis, using approaches designed for recurrent pericarditis has shown promising results, and the immune evasive nature of Coxsackie A virus underscores the need for further research to improve our understanding and treatment of this condition., Competing Interests: The authors declare no conflicts of interest., (© 2024 The Author(s). Clinical Case Reports published by John Wiley & Sons Ltd.)
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- 2024
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35. Development of Molecularly Imprinted Magnetic Amino Acid-Based Nanoparticles for Voltammetric Analysis of Lead Ions in Honey.
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Karagözlü M, Aşır S, Abu Shama N, Göktürk I, Yılmaz F, Türkmen D, Denizli A, and Özgören M
- Abstract
Lead (Pb) is a hazardous metal that poses a significant threat to both the environment and human health. The presence of Pb in food products such as honey can pose a significant risk to human health and is therefore important to detect and monitor. In this study, we propose a voltammetric detection method using molecularly imprinted polymer (MIP) electrodes to detect Pb (II) ions in honey. Pb (II) ion-imprinted amino acid-based nanoparticles with magnetic properties on a carbon paste electrode (MIP-CPE) were designed to have high sensitivity and selectivity towards Pb (II) ions in the honey sample. Zetasizer measurements, electron spin resonance, and scanning electron microscopy were used to characterize magnetic polymeric nanoparticles. The results showed that the voltammetric detection method using MIP-CPE was able to accurately detect Pb (II) ions in honey samples with a low detection limit. The proposed method offers a simple, rapid, cost-effective solution for detecting Pb (II) ions in honey. It could potentially be applied to other food products to ensure their safety for human consumption. The MIP-CPE sensor was designed to have high sensitivity and selectivity towards Pb (II) ions in the honey sample. The results showed that the technique was able to deliver highly sensitive results since seven different concentrations were prepared and detected to obtain an R
2 of 0.9954, in addition to a low detection limit (LOD) of 0.0912 µM and a low quantification limit (LOQ) of 0.276 µM. Importantly, the analysis revealed no trace of Pb (II) ions in the honey samples obtained from Cyprus.- Published
- 2024
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36. Association between rheumatoid arthritis and atrial fibrillation: A systematic review and meta-analysis.
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Jaiswal V, Roy P, Ang SP, Shama N, Deb N, Taha AM, Rajak K, Sharma A, Halder A, Wajid Z, Agrawal V, Khela H, and Biswas M
- Abstract
Rheumatoid arthritis (RA) is an autoimmune disorder with a varying range of organs involved leading to adverse outcomes. However, very little is known, with conflicting results about the association between RA and atrial fibrillation (AF). We aim to evaluate the association between RA and AF, and other clinical outcomes. We performed a systematic literature search using PubMed, Embase, and Scopus for relevant articles from inception until September 10, 2023. Primary clinical outcomes were AF. Secondary outcomes were acute coronary syndrome (ACS), stroke, and all-cause mortality (ACM). A total of 4 679 930 patients were included in the analysis, with 81 677 patients in the RA group and 4 493 993 patients in the nonrheumatoid arthritis (NRA) group. The mean age of the patients was 57.2 years. Pooled analysis of primary outcomes shows that RA groups of patients had a significantly higher risk of AF (odds ratios [OR], 1.53; 95% confidence interval [CI]: [1.16-2.03], p < .001) compared with NRA groups. Secondary Outcomes show that the RA group of patients had significantly higher odds of ACS (OR, 1.39; 95% CI: [1.26-1.52], p < .001), and ACM (OR, 1.19; 95% CI: [1.03-1.37], p = .02) compared with the NRA groups. However, the likelihood of stroke (OR, 1.02; 95% CI: [0.94-1.11], p = .61) was comparable between both groups of patients. Our study shows that RA groups of patients are at increased risk of having AF, ACS, and ACM., Competing Interests: Vikash Jaiswal serves as an Associate editor section of Cardiology in the European Journal of Medical Research, Frontiers in Cardiology, European Heart Journal Imaging Methods and Practice, and Plos One., (© 2024 The Authors. Journal of Arrhythmia published by John Wiley & Sons Australia, Ltd on behalf of Japanese Heart Rhythm Society.)
- Published
- 2024
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37. Disseminated histoplasmosis in an HIV/AIDS transgender male-to-female with atypical and persistent GI manifestations.
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Yee AC, Huang S, Singh R, Rizzi D, Shama N, Khoury N, and Weisberg IS
- Abstract
Disseminated histoplasmosis is a rare complication of infection due to Histoplasma capsulatum . Typically, histoplasmosis is self-limiting and asymptomatic in infected individuals with immunocompetence. Disseminated disease, however, can arise in high-risk populations with primary or acquired cellular immunodeficiency including HIV/AIDS, transplant recipients, and those undergoing immunosuppressive therapy. Here we describe a unique case of extrapulmonary gastrointestinal histoplasmosis by infiltrative Peyer's patch disease with bone marrow involvement in a transgender HIV-infected woman., (© 2023 The Authors. JGH Open published by Journal of Gastroenterology and Hepatology Foundation and John Wiley & Sons Australia, Ltd.)
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- 2023
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38. Utilization rates of intravenous thrombolysis for acute ischemic stroke in Asian countries:: A systematic review and meta-analysis.
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Gajurel BP, Nepal G, Jaiswal V, Ang SP, Nain P, Shama N, Ruchika FNU, Bohara S, Kharel S, Yadav JK, Medina JRT, and Shrestha AB
- Subjects
- Humans, Fibrinolytic Agents therapeutic use, Thrombolytic Therapy methods, Asia epidemiology, Treatment Outcome, Ischemic Stroke drug therapy, Ischemic Stroke epidemiology, Ischemic Stroke complications, Brain Ischemia complications, Stroke drug therapy, Stroke epidemiology, Stroke etiology
- Abstract
Background: Despite intravenous thrombolysis (IVT) being used for the treatment of acute ischemic stroke (AIS) for over two decades, its accessibility remains limited in various regions of the world. The Asian region, which experiences the highest age-standardized incidence of AIS, currently lacks comprehensive data on the utilization of IVT., Aims: This study aimed to provide precise estimates of IVT usage for AIS in Asian countries., Methods: A literature search was conducted on PubMed and Google using appropriate search terms. English language, peer reviewed articles published after 2010 were included in the analysis. The pooled proportion was calculated utilizing the DerSimonian and Laird random-effects model. Additionally, a subgroup analysis was conducted, taking into account factors such as the study's country, the economic status of the country, specific Asian regions, publication year (before 2015 and from 2015 onwards), study location, study setting, hospital stroke protocol, and national stroke guidelines., Results: 67 observational studies with 778,046 patients with AIS were included in the meta-analysis. The overall utilization rate of IVT was found to be 9.1%. High-income countries had a higher rate (11.3%) compared to lower-middle-income (8.1%) and upper-middle-income countries (9%). Central and North Asia had the highest rate (17.5%) and Southeast Asia had the lowest rate (6.8%). Studies conducted after 2015 had a higher thrombolysis rate (11.3%) compared to those before 2015 (1.5%). Presence of hospital stroke protocols (10.7%) and national stroke guidelines (10.1%) were associated with higher thrombolysis rates., Conclusion: The overall utilization rate of IVT for AIS in Asia stood at 9.1%, showcasing noteworthy disparities across countries, regions, and income brackets. To improve thrombolysis rates in the region, addressing prehospital delays, increasing public awareness, and implementing stroke protocols and national guidelines are key strategies., Competing Interests: The authors have no funding and conflicts of interest to disclose., (Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc.)
- Published
- 2023
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39. Recent Trends in the Management of Eosinophilic Esophagitis: A Systematic Review.
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Dutta P, Shah-Riar P, Bushra SS, Haque SN, Rafa ZI, Hawa F, Chakrabarty S, Dev Nath S, Afrin H, Shama N, Khair F, Maisha S, Kapuria P, and Dam B
- Abstract
Eosinophilic esophagitis (EoE) is a chronic immune-mediated condition characterized by inflammation and eosinophilic accumulation of the esophagus, resulting in dysphagia and food impaction. While the exact etiology of EoE remains unclear, it is believed to be triggered by food allergens and dynamic environmental factors, resulting in various clinical manifestations, from inflammation to fibrosis. Although clinical presentation varies with age, the number of eosinophils in esophagogastroduodenal endoscopy remains the diagnostic gold standard. While diet elimination, proton pump inhibitors (PPIs), topical corticosteroids, and biological therapy are promising treatment options for EoE, there are insufficient data to determine the optimal therapeutic treatment approach. Combination therapies - the use of dietary therapies in conjunction with other treatment modalities, such as PPIs, topical corticosteroids, or biologic agents - have also emerged as a potential management strategy for EoE. In this systematic review, we attempt to highlight the recent advances in EoE therapies and provide updated guidance to their management. From 2017 to 2022, we conducted a comprehensive electronic search of PubMed (MEDLINE) using specific keywords related to our objective and eventually included a total of 44 articles., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Dutta et al.)
- Published
- 2023
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40. The Impact of Tezepelumab in Uncontrolled Severe Asthma: A Systematic Review of Randomized Controlled Trials.
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Roy P, Rafa ZI, Haque SN, Tasha T, Arko SB, Agrawal H, Razu MI, Parisapogu A, Maisha S, Siddique MA, Abbasi FK, Shama N, Dev Nath S, Ghosh AS, and Quader F
- Abstract
Asthma, a chronic illness, is characterized by inflammation and airway constriction. Uncontrolled severe asthma is related to poor quality of life and increased utilization of health resources. Conventional treatments are associated with a significant amount of adverse effects. Recent years have seen the identification of various molecular effectors and signaling pathways as interesting targets for the biological therapy of severe asthma that is resistant to current therapies. Because they only target some downstream components of the inflammatory response in asthma, leaving other components unaffected, current biologic treatments only lower the exacerbation rate by 50%. If we focus on the upstream mediators of the inflammatory response in asthma, it might have a greater effect and be more efficient. Tezepelumab is a human monoclonal IgG2 antibody that specifically binds to thymic stromal lymphopoietin (TSLP) at the level of its TSLPR (thymic stromal lymphopoietin receptor) binding site, inhibiting the interaction between human TSLP and TSLPR. It is being used to treat the cytokines on the respiratory epithelial layer known as "alarmins." It is the only biologic drug available for treating severe uncontrolled asthma, despite limitations in biomarker and phenotype. In light of recent developments, the lack of knowledge on tezepelumab prompts us to publish a comprehensive systematic review. We discovered that regardless of blood eosinophil level and fractional exhaled nitric oxide levels, tezepelumab dramatically lowers asthma exacerbation in patients with severe uncontrolled asthma when compared to placebo. Tezepelumab also lessens patients' demand for healthcare resources while improving clinical indicators of lung function, health-related quality of life, and asthma management in patients. Tezepelumab plays a role in enhancing pre-bronchodilator FEV1 and lowering blood eosinophil count and fractional exhaled nitric oxide in patients with or without chronic allergies (FeNO). There have been no reports of fatalities or severe adverse events connected to tezepelumab., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2022, Roy et al.)
- Published
- 2022
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41. Dietary Changes Leading to Euglycemic Diabetic Ketoacidosis in Sodium-Glucose Cotransporter-2 Inhibitor Users: A Challenge for Primary Care Physicians?
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Somagutta MKR, Uday U, Shama N, Bathula NR, Pendyala S, Mahadevaiah A, Mahmutaj G, and Ngardig NN
- Abstract
Background: The use of euglycemic diabetic ketoacidosis (EDKA) related to sodium-glucose cotransporter 2 inhibitors (SGLT2i) use in people with diabetes has been increasingly reported. The causes are multifactorial, and dietary changes in SGLT2i users were observed to trigger EDKA. A ketogenic diet or very low-carbohydrate diet (VLCD) enhances body ketosis by breaking down fats into energy sources, causing EDKA. This study aimed to understand the patient specific risk factors and clinical characteristics of this cohort., Methods: Several databases were carefully analyzed to understand the patients' symptoms, clinical profile, laboratory results, and safety of dietary changes in SGLT2i's. Thirteen case reports identifying 14 patients on a ketogenic diet and SGLT2i's diagnosed with EDKA were reviewed., Results: Of the 14 patients, 12 (85%) presented with type-2 diabetes mellitus (DM) and 2 (15%) presented with type-1 DM. The duration of treatment with SGLT2i before the onset of EDKA varies from 1 to 365 days. The duration of consuming a ketogenic diet or VLCD before EDKA onset varies from 1 to 90 days, with over 90% of patients hospitalized <4 weeks after starting the diet. At presentation, average blood glucose was 167.50±41.80 mg/dL, pH 7.10±0.10, HCO3 8.1±3.0 mmol/L, potassium 4.2±1.1 mEq/L, anion-gap 23.6±3.5 mmol/L, and the average hemoglobin A1c was 10%±2.4%. The length of hospital stay ranged from 1 to 15 days. None of the patients were reinitiated on SGLT2i's, and 50% (2/4) of the patients reported were on the ketogenic diet or VLCD upon patient questioning., Conclusion: Despite the popularity of the ketogenic diet and VLCD for weight loss, their use in diabetics taking SGLT2i's is associated with EDKA. Physicians should educate patients with diabetes taking SGLT2i's about the risk of EDKA. In addition, patients should be encouraged to include their physicians in any decision related to significant changes in diet or exercise routines. Further research is needed to address if SGLT2i's should be permanently discontinued in patients with diabetes on SGLT2i and whether the ketogenic diet developed EDKA.
- Published
- 2022
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42. Hypovitaminosis D and cardiovascular outcomes: A systematic review and meta-analysis.
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Jaiswal V, Ishak A, Peng Ang S, Babu Pokhrel N, Shama N, Lnu K, Susan Varghese J, Storozhenko T, Ee Chia J, Naz S, Sharma P, and Jaiswal A
- Abstract
Background: The relation between blood vitamin D levels and the risk of cardiovascular outcomes is debatable. To our knowledge this is the first comparative meta -analysis of more than 100,000 patients' data with the aim to inspect the relevance of low vitamin D levels with adverse cardiovascular events., Methods: Online databases including PubMed, Embase and Cochrane Central were queried to compare the cardiovascular outcomes among hypovitaminosis D (HVD) and control group. The outcomes assessed included differences in major adverse cardiovascular events (MACE), mortality, myocardial infarction, and heart failure. Unadjusted odds ratios (OR) were calculated using a random-effect model with a 95% confidence interval (CI) and P less than 0.05 as a statistical significance., Results: A total of 8 studies including 426,039 patients were included in this analysis. HVD group was associated with a higher incidence of MACE (OR 1.92, 95% CI 1.24 to 2.98, p = 0.003), while there was no significant association of HVD and all-cause mortality (OR 1.77, 95% CI 0.75 to 4.17, p = 0.19), risk of myocardial infarction (OR 0.69, 95% CI 0.39 to 1.24, p = 0.22), and heart failure (OR 1.20, 95% CI 0.34 to 4.25, p = 0.78)., Conclusions: This meta -analysis suggested that low blood levels of vitamin D are associated with MACE, but no such difference in all-cause mortality, myocardial infarction or heart failure was observed. Appropriate supplementation of vitamin D in selected populations might be cardioprotective in nature and warrants extensive trials., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2022 The Authors.)
- Published
- 2022
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43. Symptomatology, prognosis and clinical findings of STEMI as a ramification of COVID-19: A systematic review and proportion meta-analysis.
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Jaiswal V, Almas T, Peng Ang S, David Song, Shama N, Storozhenko T, Lnu K, Parmar G, Qaiser S, Naz S, Jaiswal A, and Malik J
- Abstract
Background: There is an increasing COVID-19 population with concurrent STEMI. SARS-CoV-2 poses a significant risk of hypercoagulable and/or prothrombotic events due to the disturbance in hemostasis by affecting all three components of the Virchow's triad. These abnormalities in hemostasis are an increased risk factor for cardiovascular events, including acute thrombotic occlusion of coronary arteries leading to myocardial infarction., Objective: The objective of this study is to collate the prognosis, symptomatology and clinical findings of COVID-19 adverse events causing STEMI., Methods: Databases were queried with various keyword combinations to find applicable articles. Cardiovascular risk factors, symptomatology, mortality and rates of PCI were analyzed using random-effect model., Results: 15 studies with a total of 379 patients were included in the final analysis. Mean age of patients was 62.82 ± 36.01, with a male predominance (72%, n = 274). Hypertension, dyslipidemia and diabetes mellitus were the most common cardiovascular risk factors among these patients, with a pooled proportion of 72%, 59% and 40% respectively. Dyspnea (61%, n = 131) was the most frequent presenting symptom, followed by chest pain (60%, n = 101) and fever (56%, n = 104). 62% of the patients had obstructive CAD during coronary angiography. The primary reperfusion method used in the majority of cases was percutaneous coronary intervention (64%, n = 124). Mortality, which is the primary outcome in our study, was relatively high, with a rate of 34% across studies., Conclusion: Our findings show that most cases have been found in males, while the most common risk factors were Hypertension and Diabetes Mellitus. In most COVID-19 cases with ST-segment myocardial infarction, most hospitalized patients underwent primary percutaneous coronary intervention instead of fibrinolysis. The in-hospital mortality was significantly higher, making this report significant. As the sample size and reported study are considerably less, it warrants a further large-scale investigation to generalize it., Competing Interests: None., (© 2022 The Authors.)
- Published
- 2022
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44. Gold-Modified Molecularly Imprinted N -Methacryloyl-( l )-phenylalanine-containing Electrodes for Electrochemical Detection of Dopamine.
- Author
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Abu Shama N, Aşır S, Ozsoz M, Göktürk I, Türkmen D, Yılmaz F, and Denizli A
- Abstract
A molecularly imprinted polymer-based pencil graphite electrode (MIP PGE) sensor, modified with gold nanoparticles, was utilized for the detection of dopamine in the presence of other biochemical compounds using cyclic voltammetry (CV) and differential pulse voltammetry (DPV), depending on its strong electroactivity function. The pulse voltammetry methods recorded the highest response. In addition to the high oxidation rate of DA and the other biomolecule interferences available in the sample matrix used, which cause overlapping voltammograms, we aimed to differentiate them in a highly sensitive limit of detection range. The calibration curves for DA were obtained using the CV and DPV over the concentration range of 0.395-3.96 nM in 0.1 M phosphate buffer solution (PBS) at pH 7.4 with a correlation coefficient of 0.996 and a detection limit of 0.193 nM. The electrochemical technique was employed to detect DA molecules quantitatively in human blood plasma selected as real samples without applying any pre-treatment processes. MIP electrodes proved their ability to detect DA with high selectivity, even with epinephrine and norepinephrine competitor molecules and interferences, such as ascorbic acid (AA). The high level of recognition achieved by molecularly imprinted polymers (MIPs) is essential for many biological and pharmaceutical studies.
- Published
- 2022
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45. Cerebral Venous Sinus Thrombosis Following COVID-19 Vaccination: A Systematic Review.
- Author
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Jaiswal V, Nepal G, Dijamco P, Ishak A, Dagar M, Sarfraz Z, Shama N, Sarfraz A, Lnu K, Mitra S, Agarwala P, Naz S, Song D, and Jaiswal A
- Subjects
- COVID-19 Vaccines, ChAdOx1 nCoV-19, Humans, SARS-CoV-2, Vaccination adverse effects, COVID-19, Sinus Thrombosis, Intracranial etiology
- Abstract
Introduction: COVID-19 vaccines became available after being carefully monitored in clinical trials with safety and efficacy on the human body. However, a few recipients developed unusual side effects, including cerebral venous sinus thrombosis (CVST). We aim to systematically review the baseline features, clinical characteristics, treatment, and outcomes in patients developing CVST post-COVID-19 vaccination., Methods: This study was conducted according to the PRISMA (Preferred Reporting Items for Systematic Review and Meta-Analysis) 2020 guideline. Investigators independently searched PubMed, Embase, and Google Scholar for English language articles published from inception up until September 10, 2021, reporting the incidence of CVST post-COVID-19 vaccines. We analyzed CVST patients' baseline data, type of vaccines, clinical findings, treatment, and outcomes. Our systematic review process yielded patient-level data., Result: The final analysis included 25 studies that identified 80 patients who developed CVST after the COVID-19 vaccination. Of the 80 CVST cases, 31 (39.24%) patients died. There was no significant relationship between mortality and age ( P = .733), sex ( P = .095), vaccine type ( P = .798), platelet count ( P = .93), and comorbidities such as hypertension ( P = .734) and diabetes mellitus ( P = .758). However, mortality was associated with the duration of onset of CVST symptoms after vaccination ( P = .022). Patients with CVST post-COVID-19 vaccination were more likely to survive if treated with an anticoagulant ( P = .039). Patients who developed intracranial hemorrhage ( P = .012) or thrombosis in the cortical vein ( P = .021) were more likely to die., Conclusion: COVID-19 vaccine-associated CVST is associated with high mortality rate. Timely diagnosis and management can be lifesaving for patients.
- Published
- 2022
- Full Text
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46. Statin-induced necrotizing autoimmune myopathy: a systematic review.
- Author
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Somagutta MKR, Shama N, Pormento MKL, Jagani RP, Ngardig NN, Ghazarian K, Mahmutaj G, El-Faramawy K, Mahadevaiah A, and Jain MS
- Abstract
Statins are a class of lipid-lowering medications used worldwide by millions of people and are safe for frequent use in most patients. However, they cause necrotizing autoimmune myopathy in some patients. We reviewed case reports of 80 patients from 2010 to present diagnosed with statin-induced necrotizing autoimmune myopathy (SINAM), aiming to analyze the clinical, physiological, serologic characteristics and outcomes of SINAM. The mean age of these patients was 66 ±9.4, the majority being male (61.3%). All patients reported proximal muscle weakness, and a few had myalgias, extra muscular symptoms such as dysphagia, and pulmonary complications. Most of the patients were on atorvastatin, simvastatin, or rosuvastatin. The mean creatine kinase was 10,094.2 ±7,351.7 U/l, and anti-3-hydroxy-3-methylglutaryl-coenzyme A reductase enzyme was positive for 93.8% of patients. The majority of patients were started on steroids; other treatments were also used. Prompt cessation of statins and initiation of immunosuppressants reduced morbidity and mortality., Competing Interests: The authors declare no conflicts of interest., (Copyright © 2022 Narodowy Instytut Geriatrii, Reumatologii i Rehabilitacji w Warszawie.)
- Published
- 2022
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47. Elucidating the anatomy of a rare communicating bronchopulmonary foregut malformation (CBPFM) in a preschool child.
- Author
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Shama N, Mathai J, Rai E, and Kodiatte TA
- Subjects
- Administration, Oral, Barium Sulfate administration & dosage, Bronchoscopy, Child, Preschool, Contrast Media administration & dosage, Diagnosis, Differential, Endoscopy, Digestive System, Esophagus diagnostic imaging, Female, Humans, Lung diagnostic imaging, Recurrence, Tomography, X-Ray Computed, Tracheoesophageal Fistula surgery, Abnormalities, Multiple diagnosis, Esophagus abnormalities, Lung abnormalities, Pneumonia etiology, Tracheoesophageal Fistula diagnosis
- Abstract
Communicating bronchopulmonary foregut malformations (CBPFMs) are complex and rare anomalies. Their characteristic feature is an anomalous communication between the respiratory system (trachea, lung or bronchus) on one side and the gastrointestinal tract (oesophagus or stomach) on the other. Though acquired CBPFMs are known, the large majority of them are congenital and single. CBPFMs often go undetected even at surgery and require more than one operation before they are successfully addressed. This is because the symptomatology of CBPFM resembles the more common oesophageal atresia (OA) with tracheoesophageal fistula, wherein it may coexist. We report a patient with OA who had a rare form of CBPFM where the upper lobe of the right lung communicated with the upper oesophagus. This account highlights a novel method of working out the uncertain anatomy, in such cases. There may be associated anomalies of the lung parenchyma and vasculature usually involving the pulmonary arterial supply to the affected lung. Clinical, radiological, endoscopic and pathological characterisation permit precise diagnosis in most instances, with an occasional case that defies definition., Competing Interests: Competing interests: None declared., (© BMJ Publishing Group Limited 2020. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2021
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48. Quantitative analysis of 17 amino acids in the connective tissue of patients with pelvic organ prolapse using capillary electrophoresis-tandem mass spectrometry.
- Author
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Shama N, Bai SW, Chung BC, and Jung BH
- Subjects
- Amino Acids metabolism, Connective Tissue metabolism, Female, Humans, Reference Standards, Reproducibility of Results, Sensitivity and Specificity, Spectrometry, Mass, Electrospray Ionization methods, Amino Acids analysis, Connective Tissue chemistry, Electrophoresis, Capillary methods, Tandem Mass Spectrometry methods, Uterine Prolapse metabolism
- Abstract
The simultaneous determination of 17 amino acids in connective tissue using capillary electrophoresis is described in this study. Separation was carried out on a fused silica capillary column (80 cm x 50 mm i.d.) with 1M formic acid as the running electrolyte. The detection was conducted on a mass spectrometer by selective reaction monitoring (SRM) mode via an electrospray ionization source. Tissue samples were prepared by reduction and acid hydrolysis to extract amino acids; over 84.3% recovery was seen for all compounds. The method allowed for sensitive, reproducible, and reliable quantification, and all 17 amino acids were separated using this method. Good linearity over the investigated concentration ranges was observed, with values of R higher than 0.993 for all the analytes. Precision and accuracy examined at three concentration levels ranged from 0.2% to 19.5% and 84.1% to 120.0%, respectively. Matrix effects were also tested and ranged from -9.1% to 15.4%. The validated method was applied to the quantitation of 17 amino acids in pelvic connective tissue of pelvic organ prolapsed patients. Methionine, glutamine, and histidine were significantly higher in the experimental patients compared to the controls. This suggests that changes in the amino acid concentrations within the connective tissue could be a factor in the genesis of pelvic organ prolapse. Therefore, this method is potentially applicable for amino acid analysis in tissue, providing a more complete understanding of pelvic organ prolapse.
- Published
- 2008
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49. Quantitative determination of progesterones and corticosteroids in human urine using gas chromatography/mass spectrometry: application to pelvic organ prolapse patients.
- Author
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Shama N, Bai SW, Chung BC, and Jung BH
- Subjects
- Aged, Biomarkers urine, Female, Humans, Pelvic Floor, Reproducibility of Results, Sensitivity and Specificity, Uterine Prolapse diagnosis, Adrenal Cortex Hormones urine, Gas Chromatography-Mass Spectrometry methods, Postmenopause urine, Progesterone urine, Urinalysis methods, Uterine Prolapse urine
- Abstract
A quantitative analytical method using gas chromatography/mass spectrometry (GC/MS) to determine urinary concentrations of eight progesterones and corticosteroids has been developed. After enzymatic hydrolysis with beta-glucouronidase/arylsulfatase, urine samples were extracted by simple one-step solid-phase extraction. Obtained extracts were derivatized with a mixture of N-methyl-N-(trimethylsilyl)trifluoroacetamide/ammonium iodide/dithiothreitol and determined by GC/MS in selected ion monitoring mode to increase the sensitivity. d(4)-Cortisol and d(9)-progesterone were used as internal standards for two different steroid groups. The linear correlation coefficient was in the range of 0.9913 to 0.9998 and recoveries were over 80% for all compounds. Precision and accuracy were in the range of 0.9-18.1 and 84.1-118.7%, respectively. The limit of quantitation (LOQ) was 10 ng/mL for 11-deoxycorticosterone and 21-deoxycortisol and 5 ng/mL for all other analytes. The developed method was successfully applied on pelvic organ prolapsed patients (n = 10, age: 67.9 +/- 4.9) and post-menopausal (n = 10, age: 63.6 +/- 5.5) control women. Urinary levels of most progesterones and corticosteroids except 11-deoxycorticosterone decreased but only that of 17 alpha-hydroxyprogesterone significantly decreased in patients compared with the control groups. Thus, it is concluded that progesterones could be a factor in the pathogenesis of pelvic organ prolapse, and, among them, 17 alpha-hydroxyprogesterone could be a biomarker for pelvic organ prolapse., ((c) 2008 John Wiley & Sons, Ltd.)
- Published
- 2008
- Full Text
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