128 results on '"Shafi J"'
Search Results
2. Using Recurrent Neural Networks for Predicting Type-2 Diabetes from Genomic and Tabular Data
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Srinivasu, PN, Shafi, J, Krishna, TB, Sujatha, CN, Praveen, SP, Ijaz, MF, Srinivasu, PN, Shafi, J, Krishna, TB, Sujatha, CN, Praveen, SP, and Ijaz, MF
- Abstract
The development of genomic technology for smart diagnosis and therapies for various diseases has lately been the most demanding area for computer-aided diagnostic and treatment research. Exponential breakthroughs in artificial intelligence and machine intelligence technologies could pave the way for identifying challenges afflicting the healthcare industry. Genomics is paving the way for predicting future illnesses, including cancer, Alzheimer's disease, and diabetes. Machine learning advancements have expedited the pace of biomedical informatics research and inspired new branches of computational biology. Furthermore, knowing gene relationships has resulted in developing more accurate models that can effectively detect patterns in vast volumes of data, making classification models important in various domains. Recurrent Neural Network models have a memory that allows them to quickly remember knowledge from previous cycles and process genetic data. The present work focuses on type 2 diabetes prediction using gene sequences derived from genomic DNA fragments through automated feature selection and feature extraction procedures for matching gene patterns with training data. The suggested model was tested using tabular data to predict type 2 diabetes based on several parameters. The performance of neural networks incorporating Recurrent Neural Network (RNN) components, Long Short-Term Memory (LSTM), and Gated Recurrent Units (GRU) was tested in this research. The model's efficiency is assessed using the evaluation metrics such as Sensitivity, Specificity, Accuracy, F1-Score, and Mathews Correlation Coefficient (MCC). The suggested technique predicted future illnesses with fair Accuracy. Furthermore, our research showed that the suggested model could be used in real-world scenarios and that input risk variables from an end-user Android application could be kept and evaluated on a secure remote server.
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- 2022
3. An efficient ANFIS-EEBAT approach to estimate effort of Scrum projects
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Arora, M, Verma, S, Kavita, Wozniak, M, Shafi, J, Ijaz, MF, Arora, M, Verma, S, Kavita, Wozniak, M, Shafi, J, and Ijaz, MF
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Software effort estimation is a significant part of software development and project management. The accuracy of effort estimation and scheduling results determines whether a project succeeds or fails. Many studies have focused on improving the accuracy of predicted results, yet accurate estimation of effort has proven to be a challenging task for researchers and practitioners, particularly when it comes to projects that use agile approaches. This work investigates the application of the adaptive neuro-fuzzy inference system (ANFIS) along with the novel Energy-Efficient BAT (EEBAT) technique for effort prediction in the Scrum environment. The proposed ANFIS-EEBAT approach is evaluated using real agile datasets. It provides the best results in all the evaluation criteria used. The proposed approach is also statistically validated using nonparametric tests, and it is found that ANFIS-EEBAT worked best as compared to various state-of-the-art meta-heuristic and machine learning (ML) algorithms such as fireworks, ant lion optimizer (ALO), bat, particle swarm optimization (PSO), and genetic algorithm (GA).
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- 2022
4. A blockchain based lightweight peer-to-peer energy trading framework for secured high throughput micro-transactions
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Pradhan, NR, Singh, AP, Verma, S, Kavita, Wozniak, M, Shafi, J, Ijaz, MF, Pradhan, NR, Singh, AP, Verma, S, Kavita, Wozniak, M, Shafi, J, and Ijaz, MF
- Abstract
With the electric power grid experiencing a rapid shift to the smart grid paradigm over a deregulated energy market, Internet of Things (IoT) based solutions are gaining prominence and innovative Peer To Peer (P2P) energy trading at micro-level are being deployed. Such advancement, however leave traditional security models vulnerable and pave the path for Blockchain, an Distributed Ledger Technology (DLT) with its decentralized, open and transparency characteristics as a viable alternative. However, due to deregulation in energy trading markets, massive volumes of micro transactions are required to be supported, which become a performance bottleneck with existing Blockchain solution such as Hyperledger, Ethereum and so on. In this paper, a lightweight 'Tangle' based framework, namely IOTA (Third generation DLT) is employed for designing an energy trading market that uses Directed Acyclic Graph (DAG) based solution that not only alleviates the reward overhead for micro-transactions but also provides scalability, quantum-proof, and high throughput of such transactions at low confirmation latency. Furthermore the Masked Authentication Messaging (MAM) protocol is used over the IOTA P2P energy trading framework that allows energy producer and consumer to share the data while maintaining the confidentiality, and facilitates the data accessibility. The Raspberry Pi 3 board along with voltage sensor (INA219) used for the setting up light node and publishing and fetching data from the Tangle. The results of the obtained benchmarking indicate low confirmation latency, high throughput, system with Hyperledger Fabric and Ethereum. Moreover, the effect of transaction rate decreases when the IOTA bundle size increases more than 10. For bundle size 5 and 10 it behaves absolutely better than any other platform. The speedy confirmation time of transactions in IOTA, is most suitable for peer to peer energy trading scenarios. This study serves as a guideline for deploying, end-to-end
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- 2022
5. Cancerous Tumor Controlled Treatment Using Search Heuristic (GA)-Based Sliding Mode and Synergetic Controller
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Subhan, F, Aziz, MA, Khan, IU, Fayaz, M, Wozniak, M, Shafi, J, Ijaz, MF, Subhan, F, Aziz, MA, Khan, IU, Fayaz, M, Wozniak, M, Shafi, J, and Ijaz, MF
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Cancerous tumor cells divide uncontrollably, which results in either tumor or harm to the immune system of the body. Due to the destructive effects of chemotherapy, optimal medications are needed. Therefore, possible treatment methods should be controlled to maintain the constant/continuous dose for affecting the spreading of cancerous tumor cells. Rapid growth of cells is classified into primary and secondary types. In giving a proper response, the immune system plays an important role. This is considered a natural process while fighting against tumors. In recent days, achieving a better method to treat tumors is the prime focus of researchers. Mathematical modeling of tumors uses combined immune, vaccine, and chemotherapies to check performance stability. In this research paper, mathematical modeling is utilized with reference to cancerous tumor growth, the immune system, and normal cells, which are directly affected by the process of chemotherapy. This paper presents novel techniques, which include Bernstein polynomial (BSP) with genetic algorithm (GA), sliding mode controller (SMC), and synergetic control (SC), for giving a possible solution to the cancerous tumor cells (CCs) model. Through GA, random population is generated to evaluate fitness. SMC is used for the continuous exponential dose of chemotherapy to reduce CCs in about forty-five days. In addition, error function consists of five cases that include normal cells (NCs), immune cells (ICs), CCs, and chemotherapy. Furthermore, the drug control process is explained in all the cases. In simulation results, utilizing SC has completely eliminated CCs in nearly five days. The proposed approach reduces CCs as early as possible.
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- 2022
6. Efficient Middleware for the Portability of PaaS Services Consuming Applications among Heterogeneous Clouds
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Bharany, S, Kaur, K, Badotra, S, Rani, S, Kavita, Wozniak, M, Shafi, J, Ijaz, MF, Bharany, S, Kaur, K, Badotra, S, Rani, S, Kavita, Wozniak, M, Shafi, J, and Ijaz, MF
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Cloud providers create a vendor-locked-in environment by offering proprietary and non-standard APIs, resulting in a lack of interoperability and portability among clouds. To overcome this deterrent, solutions must be developed to exploit multiple clouds efficaciously. This paper proposes a middleware platform to mitigate the application portability issue among clouds. A literature review is also conducted to analyze the solutions for application portability. The middleware allows an application to be ported on various platform-as-a-service (PaaS) clouds and supports deploying different services of an application on disparate clouds. The efficiency of the abstraction layer is validated by experimentation on an application that uses the message queue, Binary Large Objects (BLOB), email, and short message service (SMS) services of various clouds via the proposed middleware against the same application using these services via their native code. The experimental results show that adding this middleware mildly affects the latency, but it dramatically reduces the developer's overhead of implementing each service for different clouds to make it portable.
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- 2022
7. Computational Intelligence for Observation and Monitoring: A Case Study of Imbalanced Hyperspectral Image Data Classification
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Khosravi, MR, Datta, D, Mallick, PK, Shafi, J, Choi, J, Ijaz, MF, Khosravi, MR, Datta, D, Mallick, PK, Shafi, J, Choi, J, and Ijaz, MF
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Imbalance in hyperspectral images creates a crisis in its analysis and classification operation. Resampling techniques are utilized to minimize the data imbalance. Although only a limited number of resampling methods were explored in the previous research, a small quantity of work has been done. In this study, we propose a novel illustrative study of the performance of the existing resampling techniques, viz. oversampling, undersampling, and hybrid sampling, for removing the imbalance from the minor samples of the hyperspectral dataset. The balanced dataset is classified in the next step, using the tree-based ensemble classifiers by including the spectral and spatial features. Finally, the comparative study is performed based on the statistical analysis of the outcome obtained from those classifiers that are discussed in the results section. In addition, we applied a new ensemble hybrid classifier named random rotation forest to our dataset. Three benchmark hyperspectral datasets: Indian Pines, Salinas Valley, and Pavia University, are applied for performing the experiments. We have taken precision, recall, F score, Cohen kappa, and overall accuracy as assessment metrics to evaluate our model. The obtained result shows that SMOTE, Tomek Links, and their combinations stand out to be the more optimized resampling strategies. Moreover, the ensemble classifiers such as rotation forest and random rotation ensemble provide more accuracy than others of their kind.
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- 2022
8. ESEERP: Enhanced Smart Energy Efficient Routing Protocol for Internet of Things in Wireless Sensor Nodes
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Dogra, R, Rani, S, Kavita, Shafi, J, Kim, S, Ijaz, MF, Dogra, R, Rani, S, Kavita, Shafi, J, Kim, S, and Ijaz, MF
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Wireless sensor networks (WSNs) have recently been viewed as the basic architecture that prepared the way for the Internet of Things (IoT) to arise. Nevertheless, when WSNs are linked with the IoT, a difficult issue arises due to excessive energy utilization in their nodes and short network longevity. As a result, energy constraints in sensor nodes, sensor data sharing and routing protocols are the fundamental topics in WSN. This research presents an enhanced smart-energy-efficient routing protocol (ESEERP) technique that extends the lifetime of the network and improves its connection to meet the aforementioned deficiencies. It selects the Cluster Head (CH) depending on an efficient optimization method derived from several purposes. It aids in the reduction of sleepy sensor nodes and decreases energy utilization. A Sail Fish Optimizer (SFO) is used to find an appropriate route to the sink node for data transfer following CH selection. Regarding energy utilization, bandwidth, packet delivery ratio and network longevity, the proposed methodology is mathematically studied, and the results have been compared to identical current approaches such as a Genetic algorithm (GA), Ant Lion optimization (ALO) and Particle Swarm Optimization (PSO). The simulation shows that in the proposed approach for the longevity of the network, there are 3500 rounds; energy utilization achieves a maximum of 0.5 Joules; bandwidth transmits the data at the rate of 0.52 MBPS; the packet delivery ratio (PDR) is at the rate of 96% for 500 nodes, respectively.
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- 2022
9. ResNet-32 and FastAI for diagnoses of ductal carcinoma from 2D tissue slides
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Praveen, SP, Srinivasu, PN, Shafi, J, Wozniak, M, Ijaz, MF, Praveen, SP, Srinivasu, PN, Shafi, J, Wozniak, M, and Ijaz, MF
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Carcinoma is a primary source of morbidity in women globally, with metastatic disease accounting for most deaths. Its early discovery and diagnosis may significantly increase the odds of survival. Breast cancer imaging is critical for early identification, clinical staging, management choices, and treatment planning. In the current study, the FastAI technology is used with the ResNet-32 model to precisely identify ductal carcinoma. ResNet-32 is having few layers comparted to majority of its counterparts with almost identical performance. FastAI offers a rapid approximation toward the outcome for deep learning models via GPU acceleration and a faster callback mechanism, which would result in faster execution of the model with lesser code and yield better precision in classifying the tissue slides. Residual Network (ResNet) is proven to handle the vanishing gradient and effective feature learning better. Integration of two computationally efficient technologies has yielded a precision accuracy with reasonable computational efforts. The proposed model has shown considerable efficiency in the evaluating parameters like sensitivity, specificity, accuracy, and F1 Score against the other dominantly used deep learning models. These insights have shown that the proposed approach might assist practitioners in analyzing Breast Cancer (BC) cases appropriately, perhaps saving future complications and death. Clinical and pathological analysis and predictive accuracy have been improved with digital image processing.
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- 2022
10. A Complete Process of Text Classification System Using State-of-the-Art NLP Models
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Sah Tyagi, SK, Dogra, V, Verma, S, Kavita, Chatterjee, P, Shafi, J, Choi, J, Ijaz, MF, Sah Tyagi, SK, Dogra, V, Verma, S, Kavita, Chatterjee, P, Shafi, J, Choi, J, and Ijaz, MF
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With the rapid advancement of information technology, online information has been exponentially growing day by day, especially in the form of text documents such as news events, company reports, reviews on products, stocks-related reports, medical reports, tweets, and so on. Due to this, online monitoring and text mining has become a prominent task. During the past decade, significant efforts have been made on mining text documents using machine and deep learning models such as supervised, semisupervised, and unsupervised. Our area of the discussion covers state-of-the-art learning models for text mining or solving various challenging NLP (natural language processing) problems using the classification of texts. This paper summarizes several machine learning and deep learning algorithms used in text classification with their advantages and shortcomings. This paper would also help the readers understand various subtasks, along with old and recent literature, required during the process of text classification. We believe that readers would be able to find scope for further improvements in the area of text classification or to propose new techniques of text classification applicable in any domain of their interest.
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- 2022
11. Analysis of Vessel Segmentation Based on Various Enhancement Techniques for Improvement of Vessel Intensity Profile
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Roy, S, Dash, S, Verma, S, Kavita, Kim, S, Shafi, J, Ijaz, MF, Roy, S, Dash, S, Verma, S, Kavita, Kim, S, Shafi, J, and Ijaz, MF
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It is vital to develop an appropriate prediction model and link carefully to measurable events such as clinical parameters and patient outcomes to analyze the severity of the disease. Timely identifying retinal diseases is becoming more vital to prevent blindness among young and adults. Investigation of blood vessels delivers preliminary information on the existence and treatment of glaucoma, retinopathy, and so on. During the analysis of diabetic retinopathy, one of the essential steps is to extract the retinal blood vessel accurately. This study presents an improved Gabor filter through various enhancement approaches. The degraded images with the enhancement of certain features can simplify image interpretation both for a human observer and for machine recognition. Thus, in this work, few enhancement approaches such as Gamma corrected adaptively with distributed weight (GCADW), joint equalization of histogram (JEH), homomorphic filter, unsharp masking filter, adaptive unsharp masking filter, and particle swarm optimization (PSO) based unsharp masking filter are taken into consideration. In this paper, an effort has been made to improve the performance of the Gabor filter by combining it with different enhancement methods and to enhance the detection of blood vessels. The performance of all the suggested approaches is assessed on publicly available databases such as DRIVE and CHASE_DB1. The results of all the integrated enhanced techniques are analyzed, discussed, and compared. The best result is delivered by PSO unsharp masking filter combined with the Gabor filter with an accuracy of 0.9593 for the DRIVE database and 0.9685 for the CHASE_DB1 database. The results illustrate the robustness of the recommended model in automatic blood vessel segmentation that makes it possible to be a clinical support decision tool in diabetic retinopathy diagnosis.
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- 2022
12. BBNSF: Blockchain-Based Novel Secure Framework Using RP2-RSA and ASR-ANN Technique for IoT Enabled Healthcare Systems
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Kumar, M, Mukherjee, P, Verma, S, Kavita, Kaur, M, Singh, S, Kobielnik, M, Wozniak, M, Shafi, J, Ijaz, MF, Kumar, M, Mukherjee, P, Verma, S, Kavita, Kaur, M, Singh, S, Kobielnik, M, Wozniak, M, Shafi, J, and Ijaz, MF
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The wearable healthcare equipment is primarily designed to alert patients of any specific health conditions or to act as a useful tool for treatment or follow-up. With the growth of technologies and connectivity, the security of these devices has become a growing concern. The lack of security awareness amongst novice users and the risk of several intermediary attacks for accessing health information severely endangers the use of IoT-enabled healthcare systems. In this paper, a blockchain-based secure data storage system is proposed along with a user authentication and health status prediction system. Firstly, this work utilizes reversed public-private keys combined Rivest-Shamir-Adleman (RP2-RSA) algorithm for providing security. Secondly, feature selection is completed by employing the correlation factor-induced salp swarm optimization algorithm (CF-SSOA). Finally, health status classification is performed using advanced weight initialization adapted SignReLU activation function-based artificial neural network (ASR-ANN) which classifies the status as normal and abnormal. Meanwhile, the abnormal measures are stored in the corresponding patient blockchain. Here, blockchain technology is used to store medical data securely for further analysis. The proposed model has achieved an accuracy of 95.893% and is validated by comparing it with other baseline techniques. On the security front, the proposed RP2-RSA attains a 96.123% security level.
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- 2022
13. A blockchain based lightweight peer-to-peer energy trading framework for secured high throughput micro-transactions (Aug, 10.1038/s41598-022-18603-z, 2022)
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Pradhan, NR, Singh, AP, Verma, S, Wozniak, M, Shafi, J, Ijaz, MF, Pradhan, NR, Singh, AP, Verma, S, Wozniak, M, Shafi, J, and Ijaz, MF
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- 2022
14. A Novel Blockchain-Based Healthcare System Design and Performance Benchmarking on a Multi-Hosted Testbed
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Pradhan, NR, Singh, AP, Verma, S, Kavita, Kaur, N, Roy, DS, Shafi, J, Wozniak, M, Ijaz, MF, Pradhan, NR, Singh, AP, Verma, S, Kavita, Kaur, N, Roy, DS, Shafi, J, Wozniak, M, and Ijaz, MF
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As a result of the proliferation of digital and network technologies in all facets of modern society, including the healthcare systems, the widespread adoption of Electronic Healthcare Records (EHRs) has become the norm. At the same time, Blockchain has been widely accepted as a potent solution for addressing security issues in any untrusted, distributed, decentralized application and has thus seen a slew of works on Blockchain-enabled EHRs. However, most such prototypes ignore the performance aspects of proposed designs. In this paper, a prototype for a Blockchain-based EHR has been presented that employs smart contracts with Hyperledger Fabric 2.0, which also provides a unified performance analysis with Hyperledger Caliper 0.4.2. The additional contribution of this paper lies in the use of a multi-hosted testbed for the performance analysis in addition to far more realistic Gossip-based traffic scenario analysis with Tcpdump tools. Moreover, the prototype is tested for performance with superior transaction ordering schemes such as Kafka and RAFT, unlike other literature that mostly uses SOLO for the purpose, which accounts for superior fault tolerance. All of these additional unique features make the performance evaluation presented herein much more realistic and hence adds hugely to the credibility of the results obtained. The proposed framework within the multi-host instances continues to behave more successfully with high throughput, low latency, and low utilization of resources for opening, querying, and transferring transactions into a healthcare Blockchain network. The results obtained in various rounds of evaluation demonstrate the superiority of the proposed framework.
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- 2022
15. Fine-Tuned DenseNet-169 for Breast Cancer Metastasis Prediction Using FastAI and 1-Cycle Policy
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Vulli, A, Srinivasu, PN, Sashank, MSK, Shafi, J, Choi, J, Ijaz, MF, Vulli, A, Srinivasu, PN, Sashank, MSK, Shafi, J, Choi, J, and Ijaz, MF
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Lymph node metastasis in breast cancer may be accurately predicted using a DenseNet-169 model. However, the current system for identifying metastases in a lymph node is manual and tedious. A pathologist well-versed with the process of detection and characterization of lymph nodes goes through hours investigating histological slides. Furthermore, because of the massive size of most whole-slide images (WSI), it is wise to divide a slide into batches of small image patches and apply methods independently on each patch. The present work introduces a novel method for the automated diagnosis and detection of metastases from whole slide images using the Fast AI framework and the 1-cycle policy. Additionally, it compares this new approach to previous methods. The proposed model has surpassed other state-of-art methods with more than 97.4% accuracy. In addition, a mobile application is developed for prompt and quick response. It collects user information and models to diagnose metastases present in the early stages of cancer. These results indicate that the suggested model may assist general practitioners in accurately analyzing breast cancer situations, hence preventing future complications and mortality. With digital image processing, histopathologic interpretation and diagnostic accuracy have improved considerably.
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- 2022
16. Hyperspectral Image Classification: Potentials, Challenges, and Future Directions
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Ding, B, Datta, D, Mallick, PK, Bhoi, AK, Ijaz, MF, Shafi, J, Choi, J, Ding, B, Datta, D, Mallick, PK, Bhoi, AK, Ijaz, MF, Shafi, J, and Choi, J
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Recent imaging science and technology discoveries have considered hyperspectral imagery and remote sensing. The current intelligent technologies, such as support vector machines, sparse representations, active learning, extreme learning machines, transfer learning, and deep learning, are typically based on the learning of the machines. These techniques enrich the processing of such three-dimensional, multiple bands, and high-resolution images with their precision and fidelity. This article presents an extensive survey depicting machine-dependent technologies' contributions and deep learning on landcover classification based on hyperspectral images. The objective of this study is three-fold. First, after reading a large pool of Web of Science (WoS), Scopus, SCI, and SCIE-indexed and SCIE-related articles, we provide a novel approach for review work that is entirely systematic and aids in the inspiration of finding research gaps and developing embedded questions. Second, we emphasize contemporary advances in machine learning (ML) methods for identifying hyperspectral images, with a brief, organized overview and a thorough assessment of the literature involved. Finally, we draw the conclusions to assist researchers in expanding their understanding of the relationship between machine learning and hyperspectral images for future research.
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- 2022
17. Robust and Secure Data Transmission Using Artificial Intelligence Techniques in Ad-Hoc Networks
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Rani, P, Kavita, Verma, S, Kaur, N, Wozniak, M, Shafi, J, Ijaz, MF, Rani, P, Kavita, Verma, S, Kaur, N, Wozniak, M, Shafi, J, and Ijaz, MF
- Abstract
The paper presents a new security aspect for a Mobile Ad-Hoc Network (MANET)-based IoT model using the concept of artificial intelligence. The Black Hole Attack (BHA) is considered one of the most affecting threats in the MANET in which the attacker node drops the entire data traffic and hence degrades the network performance. Therefore, it necessitates the designing of an algorithm that can protect the network from the BHA node. This article introduces Ad-hoc On-Demand Distance Vector (AODV), a new updated routing protocol that combines the advantages of the Artificial Bee Colony (ABC), Artificial Neural Network (ANN), and Support Vector Machine (SVM) techniques. The combination of the SVM with ANN is the novelty of the proposed model that helps to identify the attackers within the discovered route using the AODV routing mechanism. Here, the model is trained using ANN but the selection of training data is performed using the ABC fitness function followed by SVM. The role of ABC is to provide a better route for data transmission between the source and the destination node. The optimized route, suggested by ABC, is then passed to the SVM model along with the node's properties. Based on those properties ANN decides whether the node is a normal or an attacker node. The simulation analysis performed in MATLAB shows that the proposed work exhibits an improvement in terms of Packet Delivery Ratio (PDR), throughput, and delay. To validate the system efficiency, a comparative analysis is performed against the existing approaches such as Decision Tree and Random Forest that indicate that the utilization of the SVM with ANN is a beneficial step regarding the detection of BHA attackers in the MANET-based IoT networks.
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- 2022
18. A New Iterative Algorithm for General Variational Inequality Problem with Applications
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Khan, Aysha, primary, Akram, M., additional, Dilshad, M., additional, and Shafi, J., additional
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- 2022
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19. Forced convective tangent hyperbolic nanofluid flow subject to heat source/sink and Lorentz force over a permeable wedge: Numerical exploration
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Alqahtani Aisha M., Bilal Muhammad, Riaz Muhammad Bilal, Chammam Wathek, Shafi Jana, Rahman Mati ur, and Adnan
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exponential heat source/sink ,thermal radiation ,tangent hyperbolic nanofluid ,numerical approach ,lorentz force ,permeable wedge ,Technology ,Chemical technology ,TP1-1185 ,Physical and theoretical chemistry ,QD450-801 - Abstract
The magnetohydrodynamics tangent hyperbolic nanofluid (THNF) flow with the mutual impact of melting heat transfer and wedge angle over a permeable wedge is investigated numerically in the present study. Electronic devices generate excessive heat during operations, so THNF is often employed to regulate them. THNF has the ability to neutralize heat with greater efficacy, thereby reducing the probability of overheating. The influence of thermal radiation, Soret and Dufour, and heat source/sink is also observed on the fluid flow. The modeled equations are simplified to the lowest order through the similarity conversion. The obtained set of dimensionless equations is further calculated numerically by employing the parametric continuation method. The computational findings of the present study are compared to the published results for accuracy purposes. It has been detected that the results are precise and reputable. Moreover, from the graphical results, it has been perceived that the effect of permeability factor (K p) reduces the fluid flow. The rising effect of wedge angle factor enhances the energy dissemination rate and shearing stress; however the augmentation of Weissenberg number drops skin friction and energy transference rate.
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- 2024
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20. ASSESSMENT OF HEAVY METALS CONTENT IN ORGANS OF EDIBLE FISH SPECIES OF RIVER RAVI IN PAKISTAN.
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Shafi, J., Mirza, Z. S., Kosour, N., and Zafarullah, M.
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HEAVY metals , *ROHU , *CARP , *CADMIUM , *MANGANESE , *SPECIES - Abstract
Present study was conducted to investigate the content of toxic heavy metals; lead, cadmium, manganese, nickel and zinc in organs of edible fish of River Ravi. Samples of Labeo rohita, Cyprinus carpio, Gibelion catla and Cirrhinus mrigala were captured from two sites at River Ravi i.e. Kala Khatai and Head Balloki. Zinc and lead content was higher in organs of fish specimens collected from Head Balloki than those collected from Village Kala Khatai. Higher average cadmium content was detected in most of the organs of fish collected from Head Balloki than those of Village Kala Khatai. However, higher average manganese content was found in examined organs of fish captured from Village Kala Khatai than those of Head Balloki. Lead and cadmium content in muscles of fish collected from Head Balloki was higher than acceptable level proposed by European Commission (0.2 µg/g and 0.05 µg/g, respectively). Hepatosomatic index of fish species (except L. rohita) collected from Head Balloki was lower than those of Village Kala Khatai. Study has led to the conclusion that edible fish of River Ravi is contaminated with toxic metals and contamination level is higher in fish at Head Balloki as compared to that observed at Village Kala Khatai. [ABSTRACT FROM AUTHOR]
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- 2023
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21. An evaluation of the performance characteristics of the World Health Organization’s syndromic diagnosis for c. trachomatis and n. gonorrhoeae infections among high risk women in Mombasa, Kenya
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Zane, G., primary, Masese, L., additional, Kabare, E., additional, Adala, L., additional, Shafi, J., additional, Manguro, G., additional, Deya, R., additional, Mochache, V., additional, Jaoko, W., additional, Mandaliya, K., additional, Khosropour, C., additional, McClelland, R.S., additional, and Balkus, J., additional
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- 2020
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22. ASSESSMENT OF SOIL QUALITY FOR AQUACULTURE ACTIVITIES FROM FOUR DIVISIONS OF PUNJAB, PAKISTAN.
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Shafi, J., Waheed, K. N., Mirza, Z. S., and Zafarullah, M.
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SOIL quality , *LIMING of soils , *PARTICLE size distribution , *AQUACULTURE , *FISH farming , *SOIL salinity , *CALCAREOUS soils - Abstract
Present study was based on determination of soil quality to assess its suitability for aquaculture activities from thirty-one selected areas situated in four division of Punjab. Results indicated that soil particle size distribution was suitable for construction of fish ponds at most of the sites in Lahore and Sahiwal. In Gujranwala, about 50% of soil samples contained higher sand content (> 60%). Clay particles were found to be less than 25% in 75% of the soil samples whereas sand content was higher than 50% in 25% of the samples collected from Sargodha division. Higher soil pH (> 7.0) found at all sites showed calcareous nature of soil and indicated that liming soil to increase pH was not a necessity in these areas. Soil at all the studied areas of Sargodha was found to be saline or very strongly saline except at Village Hernali in Mianwali district. It was found that about 83%, 100% and 80% of sites studied in Lahore, Sahiwal and Sargodha can be used for fish culture respectively. However, none of the site in Gujranwala was found to be suitable for aquaculture if used in present form. Appropriate soil management techniques can be adopted to use the land with unsuitable soil particle size distribution for aquaculture. Saline nature of soil in Sargodha division must be considered while selecting cultureable species of fish/shrimps in these areas. [ABSTRACT FROM AUTHOR]
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- 2021
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23. EFFECT OF DIFFERENT SUBSTRATES ON FISH PRODUCTION AND WATER QUALITY IN PERIPHYTON BASED POLYCULTURE OF MAJOR CARPS.
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Shafi, J., Waheed, K. N., Zafarullah, M., Mirza, Z. S., and Rasheed, T.
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WATER quality , *FISH stocking , *ROHU , *CATLA catla , *PERIPHYTON , *POLYVINYL chloride pipe , *CARP , *WHITELEG shrimp - Abstract
The study was designed to assess the effects of periphyton grown on different substrates on water quality and production of major carps cultured in zero water exchange system. Three experimental treatments included; T1 (Control): without substrate, T2: using PVC pipes substrates, T3, using Bamboo poles substrates. Fish seed of Labeo rohita: Cirrhinus mrigala and Gibelion catla were stocked in cemented tanks in 1:1:1 ratio at stocking density of 3 fishm-2 for 60 days period. Survival rate of L. rohita, C. mrigala and G. catla was significantly higher (p<0.05) in substrates based treatments. In T1, T2 & T3, it was found to be 34.09%, 81.82% & 90.91% for L. rohita; 22.73%, 100.0% & 100.0% for C. mrigala and 36.36%, 90.91% & 100.0% for G. catla respectively. Total fish biomass of L. rohita, C. mrigala and G. catla harvested at the end of trial was 2.24, 4.32 and 1.42 times higher in treatment with bamboo poles as substrates and 1.18, 3.64 and 0.75 time higher in PVC pipes based treatment than that of control. Concentration of ammonia and nitrite was found to be significantly low in treatments with periphyton than control. High fish survival in periphyton based systems can be attributed to bioremediation through bioprocesses of their ubiquitous microbial biofilms. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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24. Applications Of Home -Build Micro Flow Injection (μFIA) Spectrophotometric system for Chloride Determination in Water.
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ALJORANI, YOUSIF SHAFI J. and AL-SOWDANI, K. H.
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FLOW injection analysis ,CHEMICAL reagents ,CHEMICAL detectors ,CHLORIDE ions - Abstract
Copyright of Journal of Basrah Researches (Sciences) is the property of Republic of Iraq Ministry of Higher Education & Scientific Research (MOHESR) and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2020
25. Bacterial vaginosis – what does body mass index have to do with it?
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Lokken, E.M., primary, Richardson, B.A., additional, Kinuthia, J., additional, Mwinyikai, K., additional, Abdalla, A., additional, Jaoko, W., additional, Mandaliya, K., additional, Shafi, J., additional, Overbaugh, J., additional, and McClelland, R.S., additional
- Published
- 2017
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26. Evaluation of presumptive treatment recommendation for asymptomatic anorectal gonorrhoea and chlamydia infections in at-risk MSM in Kenya
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Okuku, HS, Wahome, E, Duncan, S, Thiongo', A, Mwambi, J, Shafi, J, Smith, AD, Graham, SM, and Sanders, EJ
- Published
- 2016
27. 3: Detection of macrolide resistance-mediating mutations among women with mycoplasma genitalium infection in the preventing vaginal infections trial
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Balkus, J.E., primary, Manhart, L.E., additional, Jensen, J.O., additional, Anzala, O., additional, Kimani, J., additional, Schwebke, J., additional, Shafi, J., additional, Riveurs, C., additional, and McClelland, R.S., additional
- Published
- 2016
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28. DETERMINATION OF PHYTOCHEMICALS, ANTIOXIDANT ACTIVITY AND BIOCHEMICAL COMPOSITION OF CHINESE MUGWORT (ARTEMISIA ARGYI L.) LEAF EXTRACT FROM NORTHEAST CHINA.
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AHMED, M., JI, M., QIN, P., GU, Z., LIU, Y., SIKANDAR, A., IQBAL, M. F., JAVEED, A., SHAFI, J., and DU, Y.
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PHYTOCHEMICALS ,PLANT phenols ,ARTEMISIA ,GALLIC acid ,COMPOSITION of leaves ,TERPENES ,FLAVONES - Abstract
Present study aimed to investigate phytoconstituents, total phenolic and flavonoids content, antioxidant activity and biochemical composition of the leaf extract of Artemisia argyi L. Qualitative analysis was conducted using standard methods however, total phenolic, flavonoids content and antioxidant activity was assessed by Folin-Ciocalteu, aluminium chloride colourimetric method and 1, 1- Diphenyl-2-picrylhydrazyl (DPPH) assay, respectively. Compositional analysis was carried out by Gas chromatography-mass spectrometry (GC-MS). The outcome of the qualitative analysis suggested the presence of flavonoids, phenols, terpenoids, steroids, saponins, tannins and flavones except for alkaloids and glycosides. However, total phenols recorded were 16.89, 7.45 and 3.63 mg gallic acid equivalent GAE/g; flavonoids 20.80, 7.13 and 2.42 mg quercetin equivalent QE/g and DPPH inhibition percent was 81.48, 65.62 and 57.78% from 1
st , 2nd and 3rd extraction, respectively. GC-MS analysis exposed the existence of ten biological compounds corresponding to 99.91% of the total extract. However, erucylamide (33.42%), 1-decene, 4-methyl- (12.63%), myo-Inositol, (10.42%), α-Cadinol (9.13%) and 2- pyrrolidinone (8.68%) were the major compounds with five minor compounds. It was concluded that the leaves of A. argyi contain biological constituents responsible for antioxidant properties which can be introduced as a natural antioxidant pharmacologically and as botanical alternative of synthetic chemicals. However further studies are required on identification of specific components responsible for such activities. [ABSTRACT FROM AUTHOR]- Published
- 2019
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29. Incident Herpes Simplex Virus Type 2 Infection Increases the Risk of Subsequent Episodes of Bacterial Vaginosis
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Masese, L., primary, Baeten, J. M., additional, Richardson, B. A., additional, Bukusi, E., additional, John-Stewart, G., additional, Jaoko, W., additional, Shafi, J., additional, Kiarie, J., additional, and McClelland, R. S., additional
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- 2013
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30. P3.059 Effect of Vaginal Washing on Lactobacillus Colonisation in HIV-Negative Kenyan Women
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Balkus, J E, primary, Manguro, G, additional, Abdalla, A, additional, Ngacha, C, additional, Shafi, J, additional, Kiarie, J, additional, Jaoko, W, additional, and McClelland, R S, additional
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- 2013
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31. P2-S2.13 A pilot study of the effectiveness of a vaginal washing cessation intervention among Kenyan female sex workers
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Masese, L., primary, McClelland, R. S., additional, Gitau, R., additional, Wanje, G., additional, Shafi, J., additional, Kashonga, F., additional, Ndinya-Achola, J., additional, Richardson, B., additional, Lester, R., additional, and Kurth, A., additional
- Published
- 2011
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32. High prevalence of Chlamydia trachomatis and Neisseria gonorrhoeae infections among HIV-1 negative men who have sex with men in coastal Kenya
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Sanders, E. J., primary, Thiong'o, A. N., additional, Okuku, H. S., additional, Mwambi, J., additional, Priddy, F., additional, Shafi, J., additional, de Vries, H., additional, McClelland, R. S., additional, and Graham, S. M., additional
- Published
- 2010
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33. Gene Deletion Contributes to the Virulence of an Outbreak Strain of Mycobacterium Tuberculosis via Immune Subversion
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Newton, S.M., primary, Smith, R.J., additional, Wilkinson, K.A., additional, Nicol, M.P., additional, Garton, N.J., additional, Fandrich, S., additional, Staples, K.J., additional, Ziegler-Heitbrock, L., additional, Stewart, G.R., additional, Wain, J.R., additional, Martineau, A.R., additional, Al-Obaid, A., additional, Shafi, J., additional, Smallie, T., additional, Rajakumar, K., additional, Andrew, P.W., additional, Foxwell, B., additional, Barer, M.R., additional, and Wilkinson, R.J., additional
- Published
- 2007
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34. Beaconless multihop routing protocol for wireless sensor networks.
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Nawaz, R., Hussain, S.A., Abid, S.A., and Shafi, J.
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- 2011
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35. Insecticidal activity of endophytic actinomycetes isolated from Azadirachta indica against Myzus persicae
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Chen Yan, Shafi Jamil, Li Maohai, Fu Danni, and Ji Mingshan
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Azadirachta indica ,endophytic actinomycetes ,Myzus persicae ,insecticidal activity ,S. albidoflavus ,Biology (General) ,QH301-705.5 - Abstract
In the present study, 85 strains of actinomycetes were isolated from the neem tree (Azadirachta indica) and screened for their insecticidal activity against the green peach aphid, Myzus persicae. The results showed that crude extracts from 24 strains exerted a contact effect against M. persicae with different insecticidal efficacies. Crude extracts from 8 actinomycetes strains exhibited the highest insecticidal activity (above 60%). Out of these 8 strains, 3 isolates that produced the maximum mortalities were screened a second time. The crude extract from strain G30 was the most virulent against the green peach aphid, with LC50 and LC95 values of 1.680 mg/mL and 4.370 mg/mL, respectively, after 48 h of treatment. The following morphological, culture, physiological and biochemical characteristics of strain G30 were recorded: (i) ovateorbicular and smooth surface spores with short and curve filaments; (ii) an aerial off-white mycelium with a mustered yellow base; (iii) inability to produce soluble pigments; (iv) the ability to hydrolyze starch but not cellulose; (v) the ability to utilize glycerin and several sugars as a carbon source but not L-rhamnose and sorbitol. Molecular identification of G30 revealed a 99.6% genetic similarity of the 16S rDNA sequence with Streptomyces albidoflavus. We conclude that the isolate G30 was S. albidoflavus and that the insecticidal activity of its crude extract was sufficiently high to become a candidate for bioinsecticide development.
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- 2018
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36. Optimization of Bacillus aerius strain JS-786 cell dry mass and its antifungal activity against Botrytis cinerea using response surface methodology
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Shafi Jamil, Mingshan Ji, Zhiqiu Qi, Xiuwei Li, Zumin Gu, Xinghai Li, Yang Zhang, Peiwen Qin, Hongzhe Tian, Wunan Che, and Kai Wang
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antifungal activity ,Bacillus aerius ,Botrytis cinerea ,cell dry mass ,response surface methodology ,Biology (General) ,QH301-705.5 - Abstract
The optimization of fermentation conditions is necessary for field application of biological control agents. The present study was designed to optimize the fermentation conditions for the Bacillus aerius strain, JS-786 in terms of cell dry mass and its antifungal activity against Botrytis cinerea with response surface methodology. A strain of bacteria with strong antifungal activity was isolated from the phyllosphere of tomato plant and identified as B. aerius JS-786 based on the sequence homology of its 16S rRNA gene. After the success of preliminary antifungal activity tests, response surface methodology was used to optimize the fermentation conditions (medium pH, gelatin percentage, incubation period, rotatory speed and incubation temperature) to maximize the cell dry mass and antifungal activity against B. cinerea. A 25 factorial central composite design was employed and multiple response optimization was used to determine the desirability of the operation. The results of regression analysis showed that at the individual level, all of the experimental parameters were significant for cell dry mass; significant results were obtained for antifungal activity pH, incubation period, rotatory speed and incubation temperature. The interactive effect of the incubation period, rotatory speed and incubation temperature was significant. Maximum cell dry mass (8.7 g/L) and inhibition zone (30.4 mm) were obtained at pH 6.4, gelatin 3.2%, incubation period 36.92 h, rotatory speed 163 rpm, and temperature 33.5°C. This study should help to formulate a more rational and cost-effective biological product both in terms of bacterial growth and antifungal activity.
- Published
- 2017
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37. Bensulfuron-methyl resistant Sagittaria trifolia L.: Multiple resistance, cross-resistance and molecular basis of resistance to acetolactate synthase-inhibiting herbicides
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Fu Danni, Shafi Jamil, Zhao Bochui, Li Xiuwei, Zhu He, Wei Songhong, and Ji Mingshan
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acetolactate synthase ,genetic analysis ,herbicide resistance ,target-site mutation ,Sagittaria trifolia L. ,Biology (General) ,QH301-705.5 - Abstract
Acetolactate synthase (ALS)-inhibiting herbicides play an important role in controlling broad-leaved weeds. Populations of Sagittaria trifolia L. showed resistance to ALS-inhibiting sulfonylurea herbicides (e.g. bensulfuron-methyl) in paddy fields in the northeast of China. In our study, whole-plant bioassays were performed on eight suspected resistant S. trifolia populations that showed high levels of resistance to bensulfuron-methyl, with resistance indices from 31.06 to 120.35. The results of ALS-activity assays were consistent with the observed whole-plant dose-response data. This confirmed that resistant populations displayed significantly higher ALS activity than the sensitive population due to prevention of normal enzyme-herbicide interaction. The mutations Pro-197-Ser, Pro-197-His, Pro-197-Thr and Pro-197-Leu were identified in the ALS gene of resistant populations. Pro-197-His and Pro-197-Thr mutations conferring resistance to bensulfuron-methyl are reported for the first time in S. trifolia. All resistant populations were resistant to sulfonylurea (SU) herbicides, but not to imidazolinone (IMI) herbicides. HLJ-5 and JL-3 populations were resistant to bispyribac-sodium of the pyrimidinyl-thiobenozoate (PTB) class of ALS herbicides, JL-2 to penoxsulam of triazolopyrimidine (TP) class and JL-1 to pyribenzoxim, also of PTB class. The eight S. trifolia populations were susceptible to other herbicide modes of action tested.
- Published
- 2017
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38. Microarrays for public health: genomic epidemiology of tuberculosis
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Shafi, J., Andrew, P.W., and Barer, M.R.
- Abstract
In response to a large local school-based outbreak of tuberculosis, we have been evaluating the utility of microarray bacterial genomic analysis in outbreak management. After initial comparison of the isolate from the index case with Mycobacterium tuberculosis H37Rv, it was possible to design robust PCRs directed towards strain-specific deletions. Rapid PCR analysis of isolates proved valuable in determining whether or not other isolates were compatible with the outbreak strain and further microarray studies revealed genetic markers that could be used to discriminate between locally circulating strains. We suggest that this approach forms the basis for developing rapid local genotyping schemes applicable to M. tuberculosis and that application to other pathogens warrants consideration. Copyright © 2002 John Wiley & Sons, Ltd.
- Published
- 2002
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39. Fresh isolates from children with severe Plasmodium falciparum malaria bind to multiple receptors.
- Author
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Heddini, A, Pettersson, F, Kai, O, Shafi, J, Obiero, J, Chen, Q, Barragan, A, Wahlgren, M, and Marsh, K
- Abstract
The sequestration of Plasmodium falciparum-infected erythrocytes (pRBC) away from the peripheral circulation is a property of all field isolates. Here we have examined the pRBC of 111 fresh clinical isolates from children with malaria for a number of adhesive features in order to study their possible coexpression and association with severity of disease. A large number of adhesion assays were performed studying rosetting, giant rosetting, and binding to CD36, intercellular adhesion molecule 1, platelet endothelial cell adhesion molecule 1, thrombospondin, heparin, blood group A, and immunoglobulins. Suspension assays were performed at the actual parasitemia of the isolate, while all the static adhesion assays were carried out at an equal adjusted parasitemia. The ability to bind to multiple receptors, as well as the ability to form rosettes and giant rosettes, was found to be more frequent among isolates from children with severe versus mild malaria (P = 0.0015). Rosettes and giant rosettes were more frequent for children with severe malaria, and the cell aggregates were larger and tighter, than for those with mild disease (P = 0.0023). Binding of immunoglobulins (97% of isolates) and of heparin (81% of isolates) to infected erythrocytes was common, and binding to heparin and blood group A was associated with severity of disease (P = 0.011 and P = 0.031, respectively). These results support the idea that isolates that bind to multiple receptors are involved in the causation of severe malaria and that several receptor-ligand interactions work synergistically in bringing about severe disease.
- Published
- 2001
40. Emergence of fluoroquinolone resistance in Neisseria gonorrhoeae isolates from four clinics in three regions of Kenya.
- Author
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Lagace-Wiens PR, Duncan S, Kimani J, Thiong'o A, Shafi J, McClelland S, Sanders EJ, Zhanel G, Muraguri N, Mehta SD, Lagace-Wiens, Philippe R S, Duncan, Sarah, Kimani, Joshua, Thiong'o, Alexander, Shafi, Juma, McClelland, Scott, Sanders, Eduard J, Zhanel, George, Muraguri, Nicholas, and Mehta, Supriya D
- Published
- 2012
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41. Using rational polynomial coefficients (RPC) to generate digital elevation models - A comparative study
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Kamal Jain, Ravibabu, M. V., Shafi, J. A., and Singh, S. P.
42. Pharmacovigilance in Pregnancy Studies, Exposures and Outcomes Ascertainment, and Findings from Low- and Middle-Income Countries: A Scoping Review.
- Author
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Shafi J, Virk MK, Kalk E, Carlucci JG, Chepkemoi A, Bernard C, McHenry MS, Were E, Humphrey J, Davies MA, Mehta UC, and Patel RC
- Subjects
- Humans, Pregnancy, Female, Drug-Related Side Effects and Adverse Reactions, Pregnancy Outcome, Pregnancy Complications drug therapy, Adverse Drug Reaction Reporting Systems statistics & numerical data, Pharmacovigilance, Developing Countries
- Abstract
Introduction: Pharmacovigilance (PV), or the ongoing safety monitoring after a medication has been licensed, plays a crucial role in pregnancy, as clinical trials often exclude pregnant people. It is important to understand how pregnancy PV projects operate in low- and middle-income countries (LMICs), where there is a disproportionate lack of PV data yet a high burden of adverse pregnancy outcomes. We conducted a scoping review to assess how exposures and outcomes were measured in recently published pregnancy PV projects in LMICs., Methods: We utilized a search string, secondary review, and team knowledge to review publications focusing on therapeutic or vaccine exposures among pregnant people in LMICs. We screened abstracts for relevance before conducting a full text review, and documented measurements of exposures and outcomes (categorized as maternal, birth, or neonatal/infant) among other factors, including study topic, setting, and design, comparator groups, and funding sources., Results: We identified 31 PV publications spanning at least 24 LMICs, all focusing on therapeutics or vaccines for infectious diseases, including HIV (n = 17), tuberculosis (TB; n = 9), malaria (n = 7), pertussis, tetanus, and diphtheria (n = 1), and influenza (n = 3). As for outcomes, n = 15, n = 31, and n = 20 of the publications covered maternal, birth, and neonatal/infant outcomes, respectively. Among HIV-specific publications, the primary exposure-outcome relationship of focus was exposure to maternal antiretroviral therapy and adverse outcomes. For TB-specific publications, the main exposures of interest were second-line drug-resistant TB and isoniazid-based prevention therapeutics for pregnant people living with HIV. For malaria-specific publications, the primary exposure-outcome relationship of interest was antimalarial medication exposure during pregnancy and adverse outcomes. Among vaccine-focused publications, the exposure was assessed during a specific time during pregnancy, with an overall interest in vaccine safety and/or efficacy. The study settings were frequently from Africa, designs varied from cohort or cross-sectional studies to clinical trials, and funding sources were largely from high-income countries., Conclusion: The published pregnancy PV projects were largely centered in Africa and concerned with infectious diseases. This may reflect the disease burden in LMICs but also funding priorities from high-income countries. As the prevalence of non-communicable diseases increases in LMICs, PV projects will have to broaden their scope. Birth and neonatal/infant outcomes were most reported, with fewer reporting on maternal outcomes and none on longer-term child outcomes; additionally, heterogeneity existed in definitions and ascertainment of specific measures. Notably, almost all projects covered a single therapeutic exposure, missing an opportunity to leverage their projects to cover additional exposures, add scientific rigor, create uniformity across health services, and bolster existing health systems. For many publications, the timing of exposure, specifically by trimester, was crucial to maternal and neonatal safety. While currently published pregnancy PV literature offer insights into the PV landscape in LMICs, further work is needed to standardize definitions and measurements, integrate PV projects across health services, and establish longer-term monitoring., (© 2024. The Author(s).)
- Published
- 2024
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43. Advanced CNN models in gastric cancer diagnosis: enhancing endoscopic image analysis with deep transfer learning.
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Bhardwaj P, Kim S, Koul A, Kumar Y, Changela A, Shafi J, and Ijaz MF
- Abstract
Introduction: The rapid advancement of science and technology has significantly expanded the capabilities of artificial intelligence, enhancing diagnostic accuracy for gastric cancer., Methods: This research aims to utilize endoscopic images to identify various gastric disorders using an advanced Convolutional Neural Network (CNN) model. The Kvasir dataset, comprising images of normal Z-line, normal pylorus, ulcerative colitis, stool, and polyps, was used. Images were pre-processed and graphically analyzed to understand pixel intensity patterns, followed by feature extraction using adaptive thresholding and contour analysis for morphological values. Five deep transfer learning models-NASNetMobile, EfficientNetB5, EfficientNetB6, InceptionV3, DenseNet169-and a hybrid model combining EfficientNetB6 and DenseNet169 were evaluated using various performance metrics., Results & Discussion: For the complete images of gastric cancer, EfficientNetB6 computed the top performance with 99.88% accuracy on a loss of 0.049. Additionally, InceptionV3 achieved the highest testing accuracy of 97.94% for detecting normal pylorus, while EfficientNetB6 excelled in detecting ulcerative colitis and normal Z-line with accuracies of 98.8% and 97.85%, respectively. EfficientNetB5 performed best for polyps and stool with accuracies of 98.40% and 96.86%, respectively.The study demonstrates that deep transfer learning techniques can effectively predict and classify different types of gastric cancer at early stages, aiding experts in diagnosis and detection., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Bhardwaj, Kim, Koul, Kumar, Changela, Shafi and Ijaz.)
- Published
- 2024
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44. Sexual Violence, Genital Cytokines, and Colposcopy Findings: A Cross-Sectional Study of Women Engaged in Sex Work in Mombasa, Kenya.
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Kwendakwema CN, Sabo MC, Roberts ST, Masese L, McClelland RS, Shafi J, Lehman DA, Overbaugh J, and Graham SM
- Abstract
Background: Sexual violence (SV) increases HIV susceptibility in a sustained manner. This study evaluated genital cytokines and colposcopy findings in women reporting both recent and more remote SV.Methods: A cross-sectional study of HIV-1 negative Kenyan women who engage in sex work (WESW) was performed. Cervicovaginal fluid was collected by menstrual cup and cytokines (IFNγ, TNFα, IL-1β, IL-6, IL-10, MIP-1α, MIP-1β and CXCL10) measured using chemiluminescence. Cervical injury was assessed by colposcopy. Associations between recent (≤30 days prior), more remote (>30 days prior) and no (reference category) SV exposure and cytokine concentrations were evaluated using linear regression., Results: Among 282 participants, 25 (8.9%) reported recent SV and 123 (43.6%) reported more remote SV. Only two cytokines (IL-10 and CXCL10) were associated with the 3-category SV variable in bivariable modeling at the pre-specified cut-off (p < 0.2) and carried forward. In multivariable analyses, more remote SV (β = 0.72, 95% CI 0.06, 1.38; p = 0.03), but not recent SV (β = 0.20, 95%CI -0.99, 1.39; p = 0.74) was associated with cervicovaginal IL-10 compared to no SV. Recent (β = 0.36, 95% CI -0.94, 1.67; p = 0.58) and more remote (β = 0.51, 95% CI -0.21, 1.24; p = 0.16) SV were not associated with CXCL10 compared to no SV. Cervical epithelial friability (χ2 = 1.3, p = 0.51), erythema (χ2 = 2.9, p = 0.24), vascular disruption (χ2 = 1.4; p = 0.50), epithelial disruption (χ2 = 2.6, p = 0.27), or any colposcopy finding (χ2 = 1.2, p = 0.54) were not associated with SV category by chi-square test., Conclusions: The mechanism linking SV to sustained increases in HIV susceptibility may not be related to persistent genital inflammation or injury., Competing Interests: Conflicts of interest: RSM receives research funding, paid to the University of Washington, from Hologic Corporation. JO is on the scientific advisory board of Aerium Therapeutics. For the remaining authors, no conflicts of interest were declared., (Copyright © 2024 American Sexually Transmitted Diseases Association. All rights reserved.)
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- 2024
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45. Automated detection and recognition system for chewable food items using advanced deep learning models.
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Kumar Y, Koul A, Kamini, Woźniak M, Shafi J, and Ijaz MF
- Subjects
- Humans, Recognition, Psychology, Food, Mental Recall, Records, Deep Learning
- Abstract
Identifying and recognizing the food on the basis of its eating sounds is a challenging task, as it plays an important role in avoiding allergic foods, providing dietary preferences to people who are restricted to a particular diet, showcasing its cultural significance, etc. In this research paper, the aim is to design a novel methodology that helps to identify food items by analyzing their eating sounds using various deep learning models. To achieve this objective, a system has been proposed that extracts meaningful features from food-eating sounds with the help of signal processing techniques and deep learning models for classifying them into their respective food classes. Initially, 1200 audio files for 20 food items labeled have been collected and visualized to find relationships between the sound files of different food items. Later, to extract meaningful features, various techniques such as spectrograms, spectral rolloff, spectral bandwidth, and mel-frequency cepstral coefficients are used for the cleaning of audio files as well as to capture the unique characteristics of different food items. In the next phase, various deep learning models like GRU, LSTM, InceptionResNetV2, and the customized CNN model have been trained to learn spectral and temporal patterns in audio signals. Besides this, the models have also been hybridized i.e. Bidirectional LSTM + GRU and RNN + Bidirectional LSTM, and RNN + Bidirectional GRU to analyze their performance for the same labeled data in order to associate particular patterns of sound with their corresponding class of food item. During evaluation, the highest accuracy, precision,F1 score, and recall have been obtained by GRU with 99.28%, Bidirectional LSTM + GRU with 97.7% as well as 97.3%, and RNN + Bidirectional LSTM with 97.45%, respectively. The results of this study demonstrate that deep learning models have the potential to precisely identify foods on the basis of their sound by computing the best outcomes., (© 2024. The Author(s).)
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- 2024
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46. Enhancing parasitic organism detection in microscopy images through deep learning and fine-tuned optimizer.
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Kumar Y, Garg P, Moudgil MR, Singh R, Woźniak M, Shafi J, and Ijaz MF
- Subjects
- Animals, Microscopy, Parasites, Deep Learning, Babesia, Toxoplasma
- Abstract
Parasitic organisms pose a major global health threat, mainly in regions that lack advanced medical facilities. Early and accurate detection of parasitic organisms is vital to saving lives. Deep learning models have uplifted the medical sector by providing promising results in diagnosing, detecting, and classifying diseases. This paper explores the role of deep learning techniques in detecting and classifying various parasitic organisms. The research works on a dataset consisting of 34,298 samples of parasites such as Toxoplasma Gondii, Trypanosome, Plasmodium, Leishmania, Babesia, and Trichomonad along with host cells like red blood cells and white blood cells. These images are initially converted from RGB to grayscale followed by the computation of morphological features such as perimeter, height, area, and width. Later, Otsu thresholding and watershed techniques are applied to differentiate foreground from background and create markers on the images for the identification of regions of interest. Deep transfer learning models such as VGG19, InceptionV3, ResNet50V2, ResNet152V2, EfficientNetB3, EfficientNetB0, MobileNetV2, Xception, DenseNet169, and a hybrid model, InceptionResNetV2, are employed. The parameters of these models are fine-tuned using three optimizers: SGD, RMSprop, and Adam. Experimental results reveal that when RMSprop is applied, VGG19, InceptionV3, and EfficientNetB0 achieve the highest accuracy of 99.1% with a loss of 0.09. Similarly, using the SGD optimizer, InceptionV3 performs exceptionally well, achieving the highest accuracy of 99.91% with a loss of 0.98. Finally, applying the Adam optimizer, InceptionResNetV2 excels, achieving the highest accuracy of 99.96% with a loss of 0.13, outperforming other optimizers. The findings of this research signify that using deep learning models coupled with image processing methods generates a highly accurate and efficient way to detect and classify parasitic organisms., (© 2024. The Author(s).)
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- 2024
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47. FedHealthFog: A federated learning-enabled approach towards healthcare analytics over fog computing platform.
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Tripathy SS, Bebortta S, Chowdhary CL, Mukherjee T, Kim S, Shafi J, and Ijaz MF
- Abstract
The emergence of federated learning (FL) technique in fog-enabled healthcare system has leveraged enhanced privacy towards safeguarding sensitive patient information over heterogeneous computing platforms. In this paper, we introduce the FedHealthFog framework, which was meticulously developed to overcome the difficulties of distributed learning in resource-constrained IoT-enabled healthcare systems, particularly those sensitive to delays and energy efficiency. Conventional federated learning approaches face challenges stemming from substantial compute requirements and significant communication costs. This is primarily due to their reliance on a singular server for the aggregation of global data, which results in inefficient training models. We present a transformational approach to address these problems by elevating strategically placed fog nodes to the position of local aggregators within the federated learning architecture. A sophisticated greedy heuristic technique is used to optimize the choice of a fog node as the global aggregator in each communication cycle between edge devices and the cloud. The FedHealthFog system notably accounts for drop in communication latency of 87.01%, 26.90%, and 71.74%, and energy consumption of 57.98%, 34.36%, and 35.37% respectively, for three benchmark algorithms analyzed in this study. The effectiveness of FedHealthFog is strongly supported by outcomes of our experiments compared to cutting-edge alternatives while simultaneously reducing number of global aggregation cycles. These findings highlight FedHealthFog's potential to transform federated learning in resource-constrained IoT environments for delay-sensitive applications., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
- Published
- 2024
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48. Energy transmission through radiative ternary nanofluid flow with exponential heat source/sink across an inclined permeable cylinder/plate: numerical computing.
- Author
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Bilal M, Waqas M, Shafi J, Rahman MU, Eldin SM, and Alaoui MK
- Abstract
The steady two-dimension (2D) ternary nanofluid (TNF) flow across an inclined permeable cylinder/plate is analyzed in the present study. The TNF flow has been examined under the consequences of heat source/sink, permeable medium and mixed convection. For the preparation of TNF, the magnesium oxide (MgO), cobalt ferrite (CoFe
2 O4 ) and titanium dioxide (TiO2 ) are dispersed in water. The rising need for highly efficient cooling mechanisms in several sectors and energy-related processes ultimately inspired the current work. The fluid flow and energy propagation is mathematically described in the form of coupled PDEs. The system of PDEs is reduced into non-dimensional forms of ODEs, which are further numerically handled through the Matlab package (bvp4c). It has been observed that the results display that the porosity factor advances the thermal curve, whereas drops the fluid velocity. The effect of heat source/sink raises the energy field. Furthermore, the plate surface illustrates a leading behavior of energy transport over cylinder geometry versus the variation of ternary nanoparticles (NPs). The energy dissemination rate in the cylinder enhances from 4.73 to 11.421%, whereas for the plate, the energy distribution rate boosts from 6.37 to 13.91% as the porosity factor varies from 0.3 to 0.9., (© 2023. The Author(s).)- Published
- 2023
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49. Radix-4 CORDIC algorithm based low-latency and hardware efficient VLSI architecture for Nth root and Nth power computations.
- Author
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Changela A, Kumar Y, Woźniak M, Shafi J, and Ijaz MF
- Abstract
In this article, a low-complexity VLSI architecture based on a radix-4 hyperbolic COordinate Rotion DIgital Computer (CORDIC) is proposed to compute the [Formula: see text] root and [Formula: see text] power of a fixed-point number. The most recent techniques use the radix-2 CORDIC algorithm to compute the root and power. The high computation latency of radix-2 CORDIC is the primary concern for the designers. [Formula: see text] root and [Formula: see text] power computations are divided into three phases, and each phase is performed by a different class of the proposed modified radix-4 CORDIC algorithms in the proposed architecture. Although radix-4 CORDIC can converge faster with fewer recurrences, it demands more hardware resources and computational steps due to its intricate angle selection logic and variable scale factor. We have employed the modified radix-4 hyperbolic vectoring (R4HV) CORDIC to compute logarithms, radix-4 linear vectoring (R4LV) to perform division, and the modified scaling-free radix-4 hyperbolic rotation (R4HR) CORDIC to compute exponential. The criteria to select the amount of rotation in R4HV CORDIC is complicated and depends on the coordinates [Formula: see text] and [Formula: see text] of the rotating vector. In the proposed modified R4HV CORDIC, we have derived the simple selection criteria based on the fact that the inputs to R4HV CORDIC are related. The proposed criteria only depend on the coordinate [Formula: see text] that reduces the hardware complexity of the R4HV CORDIC. The R4HR CORDIC shows the complex scale factor, and compensation of such scale factor necessitates the complex hardware. The complexity of R4HR CORDIC is reduced by pre-computing the scale factor for initial iterations and by employing scaling-free rotations for later iterations. Quantitative hardware analysis suggests better hardware utilization than the recent approaches. The proposed architecture is implemented on a Virtex-6 FPGA, and FPGA implementation demonstrates [Formula: see text] less hardware utilization with better error performance than the approach with the radix-2 CORDIC algorithm., (© 2023. The Author(s).)
- Published
- 2023
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50. Author Correction: Advanced deep learning techniques for early disease prediction in cauliflower plants.
- Author
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Kanna GP, Kumar SJKJ, Kumar Y, Changela A, Woźniak M, Shafi J, and Ijaz MF
- Published
- 2023
- Full Text
- View/download PDF
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