13 results on '"Shabalina AV"'
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2. Qualitative real-time RT-PCR assay for nOPV2 poliovirus detection.
- Author
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Dolgova AS, Kanaeva OI, Antonov SA, Shabalina AV, Klyuchnikova EO, Sbarzaglia VA, Gladkikh AS, Ivanova OE, Kozlovskaya LI, and Dedkov VG
- Subjects
- Humans, 5' Untranslated Regions genetics, Poliovirus genetics, Poliovirus isolation & purification, Poliovirus classification, Sensitivity and Specificity, Real-Time Polymerase Chain Reaction methods, Poliomyelitis diagnosis, Poliomyelitis virology, Reverse Transcriptase Polymerase Chain Reaction methods, RNA, Viral genetics
- Abstract
Based on the success of the Sabin2-based vaccine, a next-generation nOPV2 poliovirus vaccine has been developed. For epidemic monitoring and conducting epidemiological investigations, it is necessary to have a diagnostic assay with the ability to differentiate this variant from others. Here we describe such a real-time RT-PCR assay. The region with the cre insertion in the 5'-UTR was chosen as the target, and the limit of detection was 10
3 copies/mL (2.5×103 copies/mL using Probit analysis) determined using armored RNA particles. Sensitivity and specificity were 86.28 - 100 % and 76.84 - 100 %, respectively (with 95 % CI). Thus, this method can be effectively used when it is necessary to make a differential diagnosis of poliovirus strains., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
- Full Text
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3. Direct evidence of the ability of Pseudomonas aeruginosa and E. coli SulA to dimerize.
- Author
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Rumyantseva NA, Golofeeva DM, Shabalina AV, and Vedyaykin AD
- Subjects
- Pseudomonas aeruginosa, Bacterial Proteins chemistry, Dimerization, Cell Division, Escherichia coli metabolism, Escherichia coli Proteins metabolism
- Abstract
The SulA protein of Escherichia coli and related bacteria interacts directly with FtsZ, blocking cell division by disrupting Z-ring formation, yet the precise mechanism remains not fully understood. Previous demonstrations of Pseudomonas aeruginosa SulA's dimerization capability were confined to X-ray crystallography and lacked confirmation under in vivo conditions. Additionally, uncertainty persisted regarding the dimerization potential of E. coli's SulA protein. This paper employs a bacterial two-hybrid system to establish that both P. aeruginosa and E. coli SulA proteins indeed possess the capacity for dimerization., Competing Interests: Declaration of competing interest The authors declare no competing interests., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2024
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4. Combined Porous-Monolithic TiNi Materials Surface-Modified with Electron Beam for New-Generation Rib Endoprostheses.
- Author
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Shabalina AV, Anikeev SG, Kulinich SA, Artyukhova NV, Vlasov VA, Kaftaranova MI, Hodorenko VN, Yakovlev EV, Pesterev EA, Lukyanenko AV, Volochaev MN, Pakholkina S, Mamazakirov O, Stolyarov VV, Mokshin AV, and Gunther VE
- Abstract
TiNi alloys are very widely used materials in implant fabrication. When applied in rib replacement, they are required to be manufactured as combined porous-monolithic structures, ideally with a thin, porous part well-adhered to its monolithic substrate. Additionally, good biocompatibility, high corrosion resistance and mechanical durability are also highly demanded. So far, all these parameters have not been achieved in one material, which is why an active search in the field is still underway. In the present study, we prepared new porous-monolithic TiNi materials by sintering a TiNi powder (0-100 µm) on monolithic TiNi plates, followed by surface modification with a high-current pulsed electron beam. The obtained materials were evaluated by a set of surface and phase analysis methods, after which their corrosion resistance and biocompatibility (hemolysis, cytotoxicity, and cell viability) were evaluated. Finally, cell growth tests were conducted. In comparison with flat TiNi monoliths, the newly developed materials were found to have better corrosion resistance, also demonstrating good biocompatibility and potential for cell growth on their surface. Thus, the newly developed porous-on-monolith TiNi materials with different surface porosity and morphology showed promise as potential new-generation implants for use in rib endoprostheses.
- Published
- 2023
- Full Text
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5. TiNi-Based Material with Shape-Memory Effect for Surgical Treatment of Diseases of Small Intestine in Newborn and Young Children.
- Author
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Anikeev SG, Kaftaranova MI, Hodorenko VN, Ivanov SD, Artyukhova NV, Shabalina AV, Kulinich SA, Slizovsky GV, Mokshin AV, and Gunther VE
- Abstract
Alloys based on TiNi are widely used in various fields of technology and medicine. In the present work, we report on the preparation of TiNi-alloy-based wire with the shape-memory effect, which was used for compression clips for surgery. The composition and structure of the wire and its martensitic and physical-chemical properties were studied using SEM, TEM, optic microscopy, profilometry, mechanical tests, etc. The TiNi alloy was found to consist of B2 and B19' and secondary-phase particles of Ti
2 Ni, TiNi3 and Ti3 Ni4 . Its matrix was slightly enriched in Ni (50.3 at.% of Ni). A homogeneous grain structure was revealed (an average grain size of 19 ± 0.3 μm) with equal quantities of grain boundaries of special and general types. The surface oxide layer provides improved biocompatibility and promotes the adhesion of protein molecules. Overall, the obtained TiNi wire was concluded to exhibit martensitic, physical and mechanical properties suitable for its use as an implant material. The wire was then used for manufacturing compression clips with the shape-memory effect and applied in surgery. The medical experiment that involved 46 children demonstrated that the use of such clips in children with double-barreled enterostomies permitted improvement in the results of surgical treatment.- Published
- 2023
- Full Text
- View/download PDF
6. Isolation and Characterization of the First Zobellviridae Family Bacteriophage Infecting Klebsiella pneumoniae .
- Author
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Gorodnichev RB, Kornienko MA, Malakhova MV, Bespiatykh DA, Manuvera VA, Selezneva OV, Veselovsky VA, Bagrov DV, Zaychikova MV, Osnach VA, Shabalina AV, Goloshchapov OV, Bespyatykh JA, Dolgova AS, and Shitikov EA
- Subjects
- Klebsiella pneumoniae genetics, Phylogeny, Genome, Viral, Recombinant Proteins genetics, Bacteriophages genetics, Podoviridae genetics
- Abstract
In order to address the upcoming crisis in the treatment of Klebsiella pneumoniae infections, caused by an increasing proportion of resistant isolates, new approaches to antimicrobial therapy must be developed. One approach would be to use (bacterio)phages and/or phage derivatives for therapy. In this study, we present a description of the first K. pneumoniae phage from the Zobellviridae family. The vB_KpnP_Klyazma podovirus, which forms translucent halos around the plaques, was isolated from river water. The phage genome is composed of 82 open reading frames, which are divided into two clusters located on opposite strands. Phylogenetic analysis revealed that the phage belongs to the Zobellviridae family, although its identity with the closest member of this family was not higher than 5%. The bacteriophage demonstrated lytic activity against all ( n = 11) K. pneumoniae strains with the KL20 capsule type, but only the host strain was lysed effectively. The receptor-binding protein of the phage was identified as a polysaccharide depolymerase with a pectate lyase domain. The recombinant depolymerase protein showed concentration-dependent activity against all strains with the KL20 capsule type. The ability of a recombinant depolymerase to cleave bacterial capsular polysaccharides regardless of a phage's ability to successfully infect a particular strain holds promise for the possibility of using depolymerases in antimicrobial therapy, even though they only make bacteria sensitive to environmental factors, rather than killing them directly.
- Published
- 2023
- Full Text
- View/download PDF
7. Phase and Structural Thermal Evolution of Bi-Si-O Catalysts Obtained via Laser Ablation.
- Author
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Shabalina AV, Golubovskaya AG, Fakhrutdinova ED, Kulinich SA, Vodyankina OV, and Svetlichyi VA
- Abstract
Laser methods are successfully used to prepare complex functional nanomaterials, especially for biomedicine, optoelectronics, and heterogeneous catalysis. In this paper, we present complex oxide and composite nanomaterials based on Bi and Si produced using laser ablation in liquid followed by subsequent powder annealing. Two synthesis approaches were used, with and without laser post-treatment of mixed (in an atomic ratio of 2:1) laser-generated Bi and Si colloids. A range of methods were used to characterize the samples: UV-Vis diffusion reflection, IR and Raman spectroscopy, synchronous thermal analysis, X-ray diffraction, transmission electron microscopy, as well as specific surface-area evaluation. We also followed the dynamics of phase transformations, as well as composition, structure and morphology of annealed powders up to 800 °C. When heated, the non-irradiated series of samples proceeded from metallic bismuth, through β-Bi
2 O3 , and resulted in bismuth silicates of various stoichiometries. At the same time, in their laser-irradiated counterparts, the formation of silicates proceeded immediately from the amorphous Bi2 SiO5 phase formed after laser treatment of mixed Bi and Si colloids. Finally, we show their ability to decompose persistent organic molecules of Rhodamine B and phenol under irradiation with a soft UV (375 nm) source.- Published
- 2022
- Full Text
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8. Electrochemical Study of Semiconductor Properties for Bismuth Silicate-Based Photocatalysts Obtained via Hydro-/Solvothermal Approach.
- Author
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Shabalina AV, Gotovtseva EY, Belik YA, Kuzmin SM, Kharlamova TS, Kulinich SA, Svetlichnyi VA, and Vodyankina OV
- Abstract
Three bismuth silicate-based photocatalysts (composites of Bi
2 SiO5 and Bi12 SiO20 ) prepared via the hydro-/solvothermal approach were studied using electrochemical methods. The characteristic parameters of semiconductors, such as flat band potential, donor density, and mobility of their charge carriers, were obtained and compared with the materials' photocatalytic activity. An attempt was made to study the effect of solution components on the semiconductor/liquid interface (SLI). In particular, the Mott-Schottky characterization was made in a common model electrolyte (Na2 SO4 ) and with the addition of glycerol as a model organic compound for photocatalysis. Thus, a medium close to those in photocatalytic experiments was simulated, at least within the limits allowed by electrochemical measurements. Zeta-potential measurements and electrochemical impedance spectroscopy were used to reveal the processes taking place at the SLI. It was found that the medium in which measurements were carried out dramatically impacted the results. The flat band potential values ( Efb ) obtained via the Mott-Schottky technique were shown to differ significantly depending on the solution used in the experiment, which is explained by different processes taking place at the SLI. A strong influence of specific adsorption of commonly used sulfate ions and neutral molecules on the measured values of Efb was shown.- Published
- 2022
- Full Text
- View/download PDF
9. Stability of Octadecyltrimethoxysilane-Based Coatings on Aluminum Alloy Surface.
- Author
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Zhizhchenko AY, Shabalina AV, Aljulaih AA, Gurbatov SO, Kuchmizhak AA, Iwamori S, and Kulinich SA
- Abstract
Long-term stability in contact with water of organosilane layers formed by octadecyltrimethoxysilane (ODTMS) on polished aluminum alloy (AA2024) through dip-coating was studied by combining SEM, water contact angle measurements, and X-ray photoelectron spectroscopy. Similar organosilane layers were formed on AA2024 coated with permanganate conversion coating, 1,2-bis(triethoxysilyl)ethane (BTSE) and hydrated SiO
x as under-layers, after which their long-term durability was also tested. During immersion in water for about one month, all the samples exhibited a decrease in hydrophobicity, implying the prepared organosilane layer was not stable over time, gradually hydrolyzing and letting water interact with the underlying layer. In parallel, SEM images of one-layer samples taken after immersion showed clear signs of local electrochemical corrosion, while XPS analysis confirmed a loss of silicon from the surface layer. The highest stability over time was demonstrated by a one-layer sample prepared in an ethanol/water bath for 5 min and by a similar ODTMS layer prepared on hydrated MnOx as an under-layer.- Published
- 2022
- Full Text
- View/download PDF
10. Development of Electrochemical Aptasensor for Lung Cancer Diagnostics in Human Blood.
- Author
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Shabalina AV, Sharko DO, Glazyrin YE, Bolshevich EA, Dubinina OV, Kim AM, Veprintsev DV, Lapin IN, Zamay GS, Krat AV, Zamay SS, Svetlichnyi VA, Kichkailo AS, and Berezovski MV
- Subjects
- Computer Simulation, Electrochemical Techniques, Electrodes, Gold, Humans, Aptamers, Nucleotide, Biosensing Techniques, Lung Neoplasms diagnosis
- Abstract
We describe the preparation and characterization of an aptamer-based electrochemical sensor to lung cancer tumor markers in human blood. The highly reproducible aptamer sensing layer with a high density (up to 70% coverage) on the gold electrode was made. Electrochemical methods and confocal laser scanning microscopy were used to study the stability of the aptamer layer structure and binding ability. A new blocking agent, a thiolated oligonucleotide with an unrelated sequence, was applied to fill the aptamer layer's defects. Electrochemical aptasensor signal processing was enhanced using deep learning and computer simulation of the experimental data array. It was found that the combinations (coupled and tripled) of cyclic voltammogram features allowed for distinguishing between the samples from lung cancer patients and healthy candidates with a mean accuracy of 0.73. The capacitive component from the non-Faradic electrochemical impedance spectroscopy data indicated the tumor marker's presence in a sample. These findings allowed for the creation of highly informative aptasensors for early lung cancer diagnostics.
- Published
- 2021
- Full Text
- View/download PDF
11. A Laser Reduced Graphene Oxide Grid Electrode for the Voltammetric Determination of Carbaryl.
- Author
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Saqib M, Dorozhko EV, Barek J, Vyskocil V, Korotkova EI, and Shabalina AV
- Subjects
- Electrochemical Techniques methods, Electrodes, Hydrogen-Ion Concentration, Lasers, Oxidation-Reduction, Carbaryl chemistry, Graphite chemistry
- Abstract
Laser-reduced graphene oxide (LRGO) on a polyethylene terephthalate (PET) substrate was prepared in one step to obtain the LRGO grid electrode for sensitive carbaryl determination. The grid form results in a grid distribution of different electrochemically active zones affecting the electroactive substance diffusion towards the electrode surface and increasing the electrochemical sensitivity for carbaryl determination. Carbaryl is electrochemically irreversibly oxidized at the secondary amine moiety of the molecule with the loss of one proton and one electron in the pH range from 5 to 7 by linear scan voltammetry (LSV) on the LRGO grid electrode with a scan rate of 300 mV/s. Some interference of the juice matrix molecules does not significantly affect the LSV oxidation current of carbaryl on the LRGO grid electrode after adsorptive accumulation without applied potential. The LRGO grid electrode can be used for LSV determination of carbaryl in fruit juices in the concentration range from 0.25 to 128 mg/L with LOD of 0.1 mg/L. The fabrication of the LRGO grid electrode opens up possibilities for further inexpensive monitoring of carbaryl in other fruit juices and fruits.
- Published
- 2021
- Full Text
- View/download PDF
12. Highly Defective Dark Nano Titanium Dioxide: Preparation via Pulsed Laser Ablation and Application.
- Author
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Fakhrutdinova ED, Shabalina AV, Gerasimova MA, Nemoykina AL, Vodyankina OV, and Svetlichnyi VA
- Abstract
The development of methods to synthesize and study the properties of dark titania is of the utmost interest due to prospects for its use, primarily in photocatalysis when excited by visible light. In this work, the dark titania powder was prepared by pulsed laser ablation (Nd:YAG laser, 1064 nm, 7 ns) in water and dried in air. To study the changes occurring in the material, the thermal treatment was applied. The structure, composition, and properties of the obtained powders were studied using transmission electron microscopy, low-temperature N
2 adsorption/desorption, X-ray diffraction, thermogravimetry/differential scanning calorimetry, X-ray photoelectron, Raman and UV-vis spectroscopies, and photoluminescence methods. The processes occurring in the initial material upon heating were studied. The electronic structure of the semiconductor materials was investigated, and the nature of the defects providing the visible light absorption was revealed. The photocatalytic and antibacterial activities of the materials obtained were also studied. Dark titania obtained via laser ablation in liquid was found to exhibit catalytic activity in the phenol photodegradation process under visible light (> 420 nm) and showed antibacterial activity against S taphylococcus aureus and bacteriostatic effect towards E scherichia coli ., Competing Interests: The authors declare no conflict of interest.- Published
- 2020
- Full Text
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13. Copper Nanoparticles for Ascorbic Acid Sensing in Water on Carbon Screen-printed Electrodes.
- Author
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Shabalina AV, Svetlichnyi VA, Ryzhinskaya KA, and Lapin IN
- Abstract
A carbon screen-printed electrode was modified with copper nanoparticles from their dispersion obtained via pulsed laser ablation of a copper target in ethanol. The modified electrode exhibited activity in ascorbic acid electrochemical oxidation, giving an anodic current peak on voltammograms. Linear sweep and cyclic voltammetry have shown a linear dependence of the signal (both peak height and peak area) on the ascorbic acid concentration. The linear range from 1 to 250 μM of ascorbic acid was studied, and the detection limit was experimentally found to be 0.5 μM. The amperometric response to the addition of ascorbic acid portions into the solution was recorded. For the case of the simultaneous presence of ascorbic acid and glucose, two separate signal were obtained. Thus, the modified electrodes are characterized by the following advantages: disposable use; small amount of the samples required for the analysis; lower price (cheap copper is used); simple and easy modification procedure; good metrological characteristics; selectivity.
- Published
- 2017
- Full Text
- View/download PDF
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