27 results on '"Sethi SA"'
Search Results
2. Experimental study on the mechanical behavior and microstructural assessment of Kevlar/epoxy composites at liquid nitrogen temperature
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Sethi Sanghamitra and Ray Bankim Chandra
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ilss ,kevlar/epoxy composites ,liquid nitrogen temperature ,sem ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
The present investigation emphasized the understanding of the mechanical behavior and progressive failure modes of Kevlar/epoxy-reinforced laminated composites subjected to a three-point bend test at liquid nitrogen (LN2) temperature (77 K). The tests were conducted on the woven fabric laminates with different loading speeds and characterized by scanning electron microscopy (SEM). The effect of LN2 temperature on the interlaminar shear strength (ILSS) of Kevlar/epoxy composites with various loading speeds was observed. The results indicate that the values of ILSS were increased at higher crosshead speeds compared to ambient temperature. The fibrillation progression and matrix failure (riverline marking) was observed by SEM. A change in crosshead speed may result in the variation of failure modes.
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- 2014
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3. Post-extubation pulmonary edema after open cholecystectomy: Significance of diastolic cardiac dysfunction
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Sethi Sameer, Arya Virender, and Chauhan Shelly
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Anesthesiology ,RD78.3-87.3 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2011
4. Correction: Pulsed moxifloxacin for the prevention of exacerbations of chronic obstructive pulmonary disease: a randomized controlled trial
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Rubinstein Ethan, Miravitlles Marc, Theron Marlize, Jones Paul W, Sethi Sanjay, Wedzicha Jadwiga A, and Wilson Robert
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Diseases of the respiratory system ,RC705-779 - Published
- 2010
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5. Pulsed moxifloxacin for the prevention of exacerbations of chronic obstructive pulmonary disease: a randomized controlled trial
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Rubinstein Ethan, Miravitlles Marc, Theron Marlize, Jones Paul W, Sethi Sanjay, Wedzicha Jadwiga A, and Wilson Robert
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Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Acute exacerbations contribute to the morbidity and mortality associated with chronic obstructive pulmonary disease (COPD). This proof-of-concept study evaluates whether intermittent pulsed moxifloxacin treatment could reduce the frequency of these exacerbations. Methods Stable patients with COPD were randomized in a double-blind, placebo-controlled trial to receive moxifloxacin 400 mg PO once daily (N = 573) or placebo (N = 584) once a day for 5 days. Treatment was repeated every 8 weeks for a total of six courses. Patients were repeatedly assessed clinically and microbiologically during the 48-week treatment period, and for a further 24 weeks' follow-up. Results At 48 weeks the odds ratio (OR) for suffering an exacerbation favoured moxifloxacin: per-protocol (PP) population (N = 738, OR 0.75, 95% confidence interval (CI) 0.565-0.994, p = 0.046), intent-to-treat (ITT) population (N = 1149, OR 0.81, 95% CI 0.645-1.008, p = 0.059), and a post-hoc analysis of per-protocol (PP) patients with purulent/mucopurulent sputum production at baseline (N = 323, OR 0.55, 95% CI 0.36-0.84, p = 0.006). There were no significant differences between moxifloxacin and placebo in any pre-specified efficacy subgroup analyses or in hospitalization rates, mortality rates, lung function or changes in St George's Respiratory Questionnaire (SGRQ) total scores. There was, however, a significant difference in favour of moxifloxacin in the SGRQ symptom domain (ITT: -8.2 vs -3.8, p = 0.009; PP: -8.8 vs -4.4, p = 0.006). Moxifloxacin treatment was not associated with consistent changes in moxifloxacin susceptibility. There were more treatment-emergent, drug related adverse events with moxifloxacin vs placebo (p < 0.001) largely due to gastrointestinal events (4.7% vs 0.7%). Conclusions Intermittent pulsed therapy with moxifloxacin reduced the odds of exacerbation by 20% in the ITT population, by 25% among the PP population and by 45% in PP patients with purulent/mucopurulent sputum at baseline. There were no unexpected adverse events and there was no evidence of resistance development. Trial registration ClinicalTrials.gov number, NCT00473460 (ClincalTrials.gov).
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- 2010
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6. Moraxella catarrhalis acquisition, airway inflammation and protease-antiprotease balance in chronic obstructive pulmonary disease
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Murphy Timothy F, Wrona Catherine T, Parameswaran Ganapathi I, and Sethi Sanjay
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Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Moraxella catarrhalis causes approximately 10% of exacerbations in chronic obstructive pulmonary disease (COPD) and also colonizes the lower airway in stable patients. Little is known about the effects of colonization by M. catarrhalis on airway inflammation and protease-antiprotease balance, and how these changes compare to those seen during exacerbations. Since COPD is a progressive inflammatory disease, elucidating the effects of bacterial colonization and exacerbation on airway inflammation is relevant to understanding disease progression in COPD. Our aims were (1) Analyze changes in airway inflammation in colonization and exacerbation of COPD due to M. catarrhalis; (2) Explore protease-antiprotease balance in colonization and exacerbation due to M. catarrhalis. Our hypothesis were (1) Acquisition of a new strain of M. catarrhalis in COPD increases airway inflammation from baseline and alters the protease-antiprotease balance towards a more proteolytic environment; (2) These changes are greater during exacerbations associated with M. catarrhalis as compared to colonization. Methods Thirty-nine consecutive COPD patients with 76 acquisitions of a new strain of M. catarrhalis over a 6-year period were identified in a prospective study. Seventy-six pre-acquisition sputum supernatant samples, obtained just before acquisition of M catarrhalis, and 76 acquisition samples (34 were associated with exacerbation, 42 with colonization) were analyzed for IL-8, TNF-α, Neutrophil Elastase (NE) and Secretory leukocyte protease inhibitor (SLPI). Changes were compared in paired samples from each patient. Results IL-8, TNF-α and NE were significantly elevated after acquisition of M. catarrhalis, compared to pre-acquisition samples (p =< 0.001 for all three). These changes were present in colonization (p = 0.015 for IL-8; p =< 0.001 for TNF-α and NE) as well as in exacerbation (p =< 0.001 for all three), compared to pre-acquisition levels. SLPI was significantly lower after acquisition (p =< 0.001), in colonization (p =< 0.001) as well as in exacerbation (p = 0.004), compared to pre-acquisition levels. SLPI levels correlated negatively with NE levels (R2 = 0.07; p = 0.001). Conclusion Acquisition of M. catarrhalis in COPD causes increased airway inflammation and worsening protease-antiprotease imbalance during exacerbations and also in colonization, even in the absence of increased symptoms. These effects could contribute to progression of airway disease in COPD.
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- 2009
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7. The problems of meta-analysis for antibiotic treatment of chronic obstructive pulmonary disease, a heterogeneous disease: a commentary on Puhan et al
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Sethi Sanjay
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Medicine - Abstract
Abstract Exacerbations are a major cause of morbidity and mortality in chronic obstructive pulmonary disease. Exacerbations can be of bacterial, viral or mixed etiology, with bacteria involved in 50% of exacerbations. Consequently, current management of exacerbations frequently involves the use of antibiotics. The paper by Puhan et al published this month in BMC Medicine examines the benefit of antibiotics in placebo-controlled trials in mild to moderate outpatient exacerbations. The authors use a meta-analytic approach and rightly conclude that more trials are needed in this area. However, the heterogeneity of chronic obstructive pulmonary disease patients and exacerbations and the limited end-points in past trials do not allow firm conclusions to be drawn about antibiotic use in outpatient exacerbations based on this meta-analysis. Future trials need to take into account this heterogeneity as well as incorporate novel end-points to address this important issue.
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- 2008
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8. MAC Security and Security Overhead Analysis in the IEEE 802.15.4 Wireless Sensor Networks
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Sethi Sakshi, Chen Hsiao-Hwa, Wang Ruhai, Sun Bo, and Xiao Yang
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Telecommunication ,TK5101-6720 ,Electronics ,TK7800-8360 - Abstract
Sensor networks have many applications. However, with limited resources such as computation capability and memory, they are vulnerable to many kinds of attacks. The IEEE 802.15.4 specification defines medium access control (MAC) layer and physical layer for wireless sensor networks. In this paper, we propose a security overhead analysis for the MAC layer in the IEEE 802.15.4 wireless sensor networks. Furthermore, we survey security mechanisms defined in the specification including security objectives, security suites, security modes, encryption, authentication, and so forth. Then, security vulnerabilities and attacks are identified. Some security enhancements are proposed to improve security and to prevent these attacks such as same-nonce attack, denial-of-service attack, reply-protection attack, ACK attack, and so forth. Our results show that, for example, with 128-bit key length and 100 MIPS, encryption overhead is 10.28 s per block, and with 100 MIPS and 1500-byte payload, the encryption overhead is as high as 5782.5 s.
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- 2006
9. Antibiotic activity of telithromycin and comparators against bacterial pathogens isolated from 3,043 patients with acute exacerbation of chronic bronchitis
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Sethi Sanjay, Anzueto Antonio, and Farrell David J
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Therapeutics. Pharmacology ,RM1-950 ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Abstract Background Antimicrobial therapy is considered an important component in the medical management of most patients with acute exacerbation of chronic bronchitis (AECB). The three predominant bacterial species isolated are nontypeable Haemophilus influenzae, Moraxella catarrhalis, and Streptococcus pneumoniae. Staphylococcus aureus is also frequently isolated while atypical bacteria are thought to cause up to 10% of exacerbations. Antibacterial resistance is increasing worldwide and little surveillance data exist concerning pathogens isolated from patients with AECB. Methods This study examines the prevalence of antibacterial resistance in isolates obtained from patients with clinically diagnosed AECB. A total of 3043 isolates were obtained from 85 centres in 29 countries, between 1999–2003, and were tested against the new ketolide telithromycin and a panel of commonly used antibiotics. Results and Discussion Of the S. pneumoniae isolates, 99.9% were susceptible to telithromycin, but only 71% were susceptible to erythromycin and 75.3% to penicillin. Of the H. influenzae isolates, 99.6% were susceptible to telithromycin. 11.7% of these isolates produced β-lactamase. Almost 10% of S. pneumoniae were multidrug-resistant; 99.0% of these isolates were susceptible to telithromycin. Telithromycin also demonstrated good in vitro activity against M. catarrhalis (MIC90 = 0.12 mg/L) and was the most active compound against methicillin-susceptible S. aureus (98.9% susceptible). Conclusion Telithromycin demonstrated similar or better activity against the bacterial species investigated than the other agents, with the most complete coverage overall. These species are the predominant causative bacterial pathogens in AECB and thus the spectrum of activity of telithromycin makes it a potential alternative for the empirical treatment of AECB.
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- 2005
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10. Multistage time-to-event models improve survival inference by partitioning mortality processes of tracked organisms.
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Sethi SA, Koeberle AL, Poulton AJ, Linden DW, Diefenbach D, Buderman FE, Casalena MJ, and Duren K
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- Animals, Birds physiology, Animals, Wild, Telemetry methods, Bayes Theorem, Fishes physiology
- Abstract
Advances in tagging technologies are expanding opportunities to estimate survival of fish and wildlife populations. Yet, capture and handling effects could impact survival outcomes and bias inference about natural mortality processes. We developed a multistage time-to-event model that can partition the survival process into sequential phases that reflect the tagged animal experience, including handling and release mortality, post-release recovery mortality, and subsequently, natural mortality. We demonstrate performance of multistage survival models through simulation testing and through fish and bird telemetry case studies. Models are implemented in a Bayesian framework and can accommodate left, right, and interval censorship events. Our results indicate that accurate survival estimates can be achieved with reasonable sample sizes ( n ≈ 100 + ) and that multimodel inference can inform hypotheses about the configuration and length of survival stages needed to adequately describe mortality processes for tracked specimens. While we focus on survival estimation for tagged fish and wildlife populations, multistage time-to-event models could be used to understand other phenomena of interest such as migration, reproduction, or disease events across a range of taxa including plants and insects., (© 2024. The Author(s).)
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- 2024
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11. Whole-lake acoustic telemetry to evaluate survival of stocked juvenile fish.
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Koeberle AL, Pearsall W, Hammers BE, Mulhall D, McKenna JE Jr, Chalupnicki M, and Sethi SA
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- Animals, New York, Telemetry, Acoustics, Lakes, Salmonidae
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Estimates of juvenile survival are critical for informing population dynamics and the ecology of fish, yet these demographic parameters are difficult to measure. Here, we demonstrate that advances in animal tracking technology provide opportunities to evaluate survival of juvenile tagged fish. We implemented a whole-lake telemetry array in conjunction with small acoustic tags (including tags < 1.0 g) to track the fate of stocked juvenile cisco (Coregonus artedi) as part of a native species restoration effort in the Finger Lakes region of New York, USA. We used time-to-event modeling to characterize the survival function of stocked fish, where we infer mortality as the cessation of tag detections. Survival estimates revealed distinct stages of juvenile cisco mortality including high immediate post-release mortality, followed by a period of elevated mortality during an acclimation period. By characterizing mortality over time, the whole-lake biotelemetry effort provided information useful for adapting stocking practices that may improve survival of stocked fish, and ultimately the success of the species reintroduction effort. The combination of acoustic technology and time-to-event modeling to inform fish survival may have wide applicability across waterbodies where receiver arrays can be deployed at scale and where basic assumptions about population closure can be satisfied., (© 2023. The Author(s).)
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- 2023
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12. Detecting and analysing intraspecific genetic variation with eDNA: From population genetics to species abundance.
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Andres KJ, Lodge DM, Sethi SA, and Andrés J
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- Biodiversity, DNA Barcoding, Taxonomic, Environmental Monitoring, Genetics, Population, Genetic Variation genetics, DNA, Environmental
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Advancements in environmental DNA (eDNA) approaches have allowed for rapid and efficient species detections in diverse environments. Although most eDNA research is focused on leveraging genetic diversity to identify taxa, some recent studies have explored the potential for these approaches to detect within-species genetic variation, allowing for population genetic assessments and abundance estimates from environmental samples. However, we currently lack a framework outlining the key considerations specific to generating, analysing and applying eDNA data for these two purposes. Here, we discuss how various genetic markers differ with regard to genetic information and detectability in environmental samples and how analysis of eDNA samples differs from common tissue-based analyses. We then outline how it may be possible to obtain species absolute abundance estimates from eDNA by detecting intraspecific genetic variation in mixtures of DNA under multiple scenarios. We also identify the major causes contributing to allele detection and frequency errors in eDNA data, discuss their consequences for population-level analyses and outline bioinformatic approaches to detect and remove erroneous sequences. This review summarizes the key advances required to harness the full potential of eDNA-based intraspecific genetic variation to inform population-level questions in ecology, evolutionary biology and conservation management., (© 2023 The Authors. Molecular Ecology published by John Wiley & Sons Ltd.)
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- 2023
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13. Toward absolute abundance for conservation applications: Estimating the number of contributors via microhaplotype genotyping of mixed-DNA samples.
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Shi Y, Dick CM, Karpan K, Baetscher D, Henderson MJ, Sethi SA, McPhee MV, and Larson WA
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Molecular methods including metabarcoding and quantitative polymerase chain reaction have shown promise for estimating species abundance by quantifying the concentration of genetic material in field samples. However, the relationship between specimen abundance and detectable concentrations of genetic material is often variable in practice. DNA mixture analysis represents an alternative approach to quantify specimen abundance based on the presence of unique alleles in a sample. The DNA mixture approach provides novel opportunities to inform ecology and conservation by estimating the absolute abundance of target taxa through molecular methods; yet, the challenges associated with genotyping many highly variable markers in mixed-DNA samples have prevented its widespread use. To advance molecular approaches for abundance estimation, we explored the utility of microhaplotypes for DNA mixture analysis by applying a 125-marker panel to 1179 Chinook salmon (Oncorhynchus tshawytscha) smolts from the Sacramento-San Joaquin Delta, California, USA. We assessed the accuracy of DNA mixture analysis through a combination of mock mixtures containing DNA from up to 20 smolts and a trophic ecological application enumerating smolts in predator diets. Mock DNA mixtures of up to 10 smolts could reliably be resolved using microhaplotypes, and increasing the panel size would likely facilitate the identification of more individuals. However, while analysis of predator gastrointestinal tract contents indicated DNA mixture analysis could discern the presence of multiple prey items, poor and variable DNA quality prevented accurate genotyping and abundance estimation. Our results indicate that DNA mixture analysis can perform well with high-quality DNA, but methodological improvements in genotyping degraded DNA are necessary before this approach can be used on marginal-quality samples., (© 2023 John Wiley & Sons Ltd.)
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- 2023
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14. Rapid population growth and high management costs have created a narrow window for control of introduced hippos in Colombia.
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Subalusky AL, Sethi SA, Anderson EP, Jiménez G, Echeverri-Lopez D, García-Restrepo S, Nova-León LJ, Reátiga-Parrish JF, Post DM, and Rojas A
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- Colombia, Population Growth
- Abstract
The introduction of hippos into the wild in Colombia has been marked by their rapid population growth and widespread dispersal on the landscape, high financial costs of management, and conflicting social perspectives on their management and fate. Here we use population projection models to investigate the effectiveness and cost of management options under consideration for controlling introduced hippos. We estimate there are 91 hippos in the middle Magdalena River basin, Colombia, and the hippo population is growing at an estimated rate of 9.6% per year. At this rate, there will be 230 hippos by 2032 and over 1,000 by 2050. Applying the population control methods currently under consideration will cost at least 1-2 million USD to sufficiently decrease hippo population growth to achieve long-term removal, and depending on the management strategy selected, there may still be hippos on the landscape for 50-100 years. Delaying management actions for a single decade will increase minimum costs by a factor of 2.5, and some methods may become infeasible. Our approach illustrates the trade-offs inherent between cost and effort in managing introduced species, as well as the importance of acting quickly, especially when dealing with species with rapid population growth rates and potential for significant ecological and social impacts., (© 2023. The Author(s).)
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- 2023
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15. Biodiversity underpins fisheries resilience to exploitation in the Amazon river basin.
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Heilpern SA, Sethi SA, Barthem RB, Batista VDS, Doria CRC, Duponchelle F, Vasquez AG, Goulding M, Isaac V, Naeem S, and Flecker AS
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- Animals, Biodiversity, Conservation of Natural Resources, Ecosystem, Fishes, Humans, Fisheries, Rivers
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Inland fisheries feed greater than 150 million people globally, yet their status is rarely assessed due to their socio-ecological complexity and pervasive lack of data. Here, we leverage an unprecedented landings time series from the Amazon, Earth's largest river basin, together with theoretical food web models to examine (i) taxonomic and trait-based signatures of exploitation in inland fish landings and (ii) implications of changing biodiversity for fisheries resilience. In both landings time series and theory, we find that multi-species exploitation of diverse inland fisheries results in a hump-shaped landings evenness curve. Along this trajectory, abundant and large species are sequentially replaced with faster growing and smaller species. Further theoretical analysis indicates that harvests can be maintained for a period of time but that continued biodiversity depletion reduces the pool of compensating species and consequently diminishes fisheries resilience. Critically, higher fisheries biodiversity can delay fishery collapse. Although existing landings data provide an incomplete snapshot of long-term dynamics, our results suggest that multi-species exploitation is affecting freshwater biodiversity and eroding fisheries resilience in the Amazon. More broadly, we conclude that trends in landings evenness could characterize multi-species fisheries development and aid in assessing their sustainability.
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- 2022
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16. Reducing adverse impacts of Amazon hydropower expansion.
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Flecker AS, Shi Q, Almeida RM, Angarita H, Gomes-Selman JM, García-Villacorta R, Sethi SA, Thomas SA, Poff NL, Forsberg BR, Heilpern SA, Hamilton SK, Abad JD, Anderson EP, Barros N, Bernal IC, Bernstein R, Cañas CM, Dangles O, Encalada AC, Fleischmann AS, Goulding M, Higgins J, Jézéquel C, Larson EI, McIntyre PB, Melack JM, Montoya M, Oberdorff T, Paiva R, Perez G, Rappazzo BH, Steinschneider S, Torres S, Varese M, Walter MT, Wu X, Xue Y, Zapata-Ríos XE, and Gomes CP
- Abstract
Proposed hydropower dams at more than 350 sites throughout the Amazon require strategic evaluation of trade-offs between the numerous ecosystem services provided by Earth's largest and most biodiverse river basin. These services are spatially variable, hence collective impacts of newly built dams depend strongly on their configuration. We use multiobjective optimization to identify portfolios of sites that simultaneously minimize impacts on river flow, river connectivity, sediment transport, fish diversity, and greenhouse gas emissions while achieving energy production goals. We find that uncoordinated, dam-by-dam hydropower expansion has resulted in forgone ecosystem service benefits. Minimizing further damage from hydropower development requires considering diverse environmental impacts across the entire basin, as well as cooperation among Amazonian nations. Our findings offer a transferable model for the evaluation of hydropower expansion in transboundary basins.
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- 2022
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17. A machine learning approach to identify barriers in stream networks demonstrates high prevalence of unmapped riverine dams.
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Buchanan BP, Sethi SA, Cuppett S, Lung M, Jackman G, Zarri L, Duvall E, Dietrich J, Sullivan P, Dominitz A, Archibald JA, Flecker A, and Rahm BG
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- Animals, Fishes, Machine Learning, Prevalence, Ecosystem, Rivers
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Restoring stream ecosystem integrity by removing unused or derelict dams has become a priority for watershed conservation globally. However, efforts to restore connectivity are constrained by the availability of accurate dam inventories which often overlook smaller unmapped riverine dams. Here we develop and test a machine learning approach to identify unmapped dams using a combination of publicly available topographic and geospatial habitat data. Specifically, we trained a random forest classification algorithm to identify unmapped dams using digitally engineered predictor variables and known dam sites for validation. We applied our algorithm to two subbasins in the Hudson River watershed, USA, and quantified connectivity impacts, as well as evaluated a range of predictor sets to examine tradeoffs between classification accuracy and model parameterization effort. The random forest classifier achieved high accuracy in predicting dam sites (true positive rate = 89%, false positive rate = 1.2%) using a subset of variables related to stream slope and presence of upstream lentic habitats. Unmapped dams were prevalent throughout the two test watersheds. In fact, existing dam inventories underestimated the true number of dams by ∼80-94%. Accounting for previously unmapped dams resulted in a 62-90% decrease in dendritic connectivity indices for migratory fishes. Unmapped dams may be pervasive and can dramatically bias stream connectivity information. However, we find that machine learning approaches can provide an accurate and scalable means of identifying unmapped dams that can guide efforts to develop accurate dam inventories, thereby informing and empowering efforts to better manage them., (Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2022
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18. Declining diversity of wild-caught species puts dietary nutrient supplies at risk.
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Heilpern SA, DeFries R, Fiorella K, Flecker A, Sethi SA, Uriarte M, and Naeem S
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Although biodiversity loss adversely influences a variety of ecosystem functions, how declining wild food diversity affects nutrient supplies for people is poorly understood. Here, we analyze the impact of declining biodiversity on nutrients supplied by fish using detailed information from the Peruvian Amazon, where inland fisheries provide a critical source of nutrition for many of the region's 800,000 people. We found that the impacts of biodiversity loss on nutrient supplies depended on compensation, trophic dynamics, and functional diversity. When small sedentary species compensated for declines in large migratory species, fatty acid supplies increased, while zinc and iron supplies decreased. In contrast, the probability of failing to maintain supplies or nutrient supply risk increased when species were nutritionally unique. Our results show that trait-based regulations and public health polices need to consider biodiversity's vital role in sustaining nutritional benefits for over 2 billion people dependent on wild foods across the globe., (Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).)
- Published
- 2021
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19. Substitution of inland fisheries with aquaculture and chicken undermines human nutrition in the Peruvian Amazon.
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Heilpern SA, Fiorella K, Cañas C, Flecker AS, Moya L, Naeem S, Sethi SA, Uriarte M, and DeFries R
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With declining capture fisheries production, maintaining nutrient supplies largely hinges on substituting wild fish with economically comparable farmed animals. Although such transitions are increasingly commonplace across global inland and coastal communities, their nutritional consequences are unknown. Here, using human demographic and health information, and fish nutrient composition data from the Peruvian Amazon, we show that substituting wild inland fisheries with chicken and aquaculture has the potential to exacerbate iron deficiencies and limit essential fatty acid supplies in a region already experiencing high prevalence of anaemia and malnutrition. Substituting wild fish with chicken, however, can increase zinc and protein supplies. Chicken and aquaculture production also increase greenhouse gas emissions, agricultural land use and eutrophication. Thus, policies that enable access to wild fisheries and their sustainable management while improving the quality, diversity and environmental impacts of farmed species will be instrumental in ensuring healthy and sustainable food systems., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2021
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20. Nuclear eDNA estimates population allele frequencies and abundance in experimental mesocosms and field samples.
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Andres KJ, Sethi SA, Lodge DM, and Andrés J
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- Animals, Biodiversity, Gene Frequency, Humans, Likelihood Functions, DNA, Environmental, Fishes genetics
- Abstract
Advances in environmental DNA (eDNA) methodologies have led to improvements in the ability to detect species and communities in aquatic environments, yet the majority of studies emphasize biological diversity at the species level by targeting variable sites within the mitochondrial genome. Here, we demonstrate that eDNA approaches also have the capacity to detect intraspecific diversity in the nuclear genome, allowing for assessments of population-level allele frequencies and estimates of the number of genetic contributors in an eDNA sample. Using a panel of microsatellite loci developed for the round goby (Neogobius melanostomus), we tested the similarity between eDNA-based and individual tissue-based estimates of allele frequencies from experimental mesocosms and in a field-based trial. Subsequently, we used a likelihood-based DNA mixture framework to estimate the number of unique genetic contributors in eDNA samples and in simulated mixtures of alleles. In both mesocosm and field samples, allele frequencies from eDNA were highly correlated with allele frequencies from genotyped round goby tissue samples, indicating nuclear markers can be reliably amplified from water samples. DNA mixture analyses were able to estimate the number of genetic contributors from mesocosm eDNA samples and simulated mixtures of DNA from up to 58 individuals, with the degree of positive or negative bias dependent on the filtering scheme of low-frequency alleles. With this study we document the application of eDNA and multiple amplicon-based methods to obtain intraspecific nuclear genetic information and estimate the absolute abundance of a species in eDNA samples. With proper validation, this approach has the potential to advance noninvasive survey methods to characterize populations and detect population-level genetic diversity., (© 2020 The Authors. Molecular Ecology published by John Wiley & Sons Ltd.)
- Published
- 2021
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21. Reducing greenhouse gas emissions of Amazon hydropower with strategic dam planning.
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Almeida RM, Shi Q, Gomes-Selman JM, Wu X, Xue Y, Angarita H, Barros N, Forsberg BR, García-Villacorta R, Hamilton SK, Melack JM, Montoya M, Perez G, Sethi SA, Gomes CP, and Flecker AS
- Abstract
Hundreds of dams have been proposed throughout the Amazon basin, one of the world's largest untapped hydropower frontiers. While hydropower is a potentially clean source of renewable energy, some projects produce high greenhouse gas (GHG) emissions per unit electricity generated (carbon intensity). Here we show how carbon intensities of proposed Amazon upland dams (median = 39 kg CO
2 eq MWh-1 , 100-year horizon) are often comparable with solar and wind energy, whereas some lowland dams (median = 133 kg CO2 eq MWh-1 ) may exceed carbon intensities of fossil-fuel power plants. Based on 158 existing and 351 proposed dams, we present a multi-objective optimization framework showing that low-carbon expansion of Amazon hydropower relies on strategic planning, which is generally linked to placing dams in higher elevations and smaller streams. Ultimately, basin-scale dam planning that considers GHG emissions along with social and ecological externalities will be decisive for sustainable energy development where new hydropower is contemplated.- Published
- 2019
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22. Dynamic occupancy modeling of temperate marine fish in area-based closures.
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Calvert J, McGonigle C, Sethi SA, Harris B, Quinn R, and Grabowski J
- Abstract
Species distribution models (SDMs) are commonly used to model the spatial structure of species in the marine environment, however, most fail to account for detectability of the target species. This can result in underestimates of occupancy, where nondetection is conflated with absence. The site occupancy model (SOM) overcomes this failure by treating occupancy as a latent variable of the model and incorporates a detection submodel to account for variability in detection rates. These have rarely been applied in the context of marine fish and never for the multiseason dynamic occupancy model (DOM). In this study, a DOM is developed for a designated species of concern, cusk ( Brosme brosme ), over a four-season period. Making novel use of a high-resolution 3-dimensional hydrodynamic model, detectability of cusk is considered as a function of current speed and algae cover. Algal cover on the seabed is measured from video surveys to divide the study area into two distinct regions: those with canopy forming species of algae and those without (henceforth bottom types). Modeled estimates of the proportion of sites occupied in each season are 0.88, 0.45, 0.74, and 0.83. These are significantly greater than the proportion of occupied sites measured from underwater video observations which are 0.57, 0.28, 0.43, and 0.57. Individual fish are detected more frequently with increasing current speed in areas lacking canopy and less frequently with increasing current speed in areas with canopy. The results indicate that, where possible, SDM studies for all marine species should take account of detectability to avoid underestimating the proportion of sites occupied at a given study area. Sampling closed areas or areas of conservation often requires the use of nonphysical, low impact sampling methods like camera surveys. These methods inherently result in detection probabilities less than one, an issue compounded by time-varying features of the environment that are rarely accounted for marine studies. This work highlights the use of modeled hydrodynamics as a tool to correct some of this imbalance.
- Published
- 2018
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23. Accurate recapture identification for genetic mark-recapture studies with error-tolerant likelihood-based match calling and sample clustering.
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Sethi SA, Linden D, Wenburg J, Lewis C, Lemons P, Fuller A, and Hare MP
- Abstract
Error-tolerant likelihood-based match calling presents a promising technique to accurately identify recapture events in genetic mark-recapture studies by combining probabilities of latent genotypes and probabilities of observed genotypes, which may contain genotyping errors. Combined with clustering algorithms to group samples into sets of recaptures based upon pairwise match calls, these tools can be used to reconstruct accurate capture histories for mark-recapture modelling. Here, we assess the performance of a recently introduced error-tolerant likelihood-based match-calling model and sample clustering algorithm for genetic mark-recapture studies. We assessed both biallelic (i.e. single nucleotide polymorphisms; SNP) and multiallelic (i.e. microsatellite; MSAT) markers using a combination of simulation analyses and case study data on Pacific walrus ( Odobenus rosmarus divergens ) and fishers ( Pekania pennanti ). A novel two-stage clustering approach is demonstrated for genetic mark-recapture applications. First, repeat captures within a sampling occasion are identified. Subsequently, recaptures across sampling occasions are identified. The likelihood-based matching protocol performed well in simulation trials, demonstrating utility for use in a wide range of genetic mark-recapture studies. Moderately sized SNP (64+) and MSAT (10-15) panels produced accurate match calls for recaptures and accurate non-match calls for samples from closely related individuals in the face of low to moderate genotyping error. Furthermore, matching performance remained stable or increased as the number of genetic markers increased, genotyping error notwithstanding.
- Published
- 2016
- Full Text
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24. Dose-Response Relationships for Meningioma Radiosurgery.
- Author
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Sethi RA, Rush SC, Liu S, Sethi SA, Parker E, Donahue B, Narayana A, Silverman J, Kondziolka D, and Golfinos JG
- Subjects
- Adult, Aged, Aged, 80 and over, Brain Edema etiology, Cohort Studies, Dose-Response Relationship, Radiation, Female, Headache etiology, Humans, Hypesthesia etiology, Logistic Models, Male, Meningeal Neoplasms pathology, Meningioma pathology, Middle Aged, Proportional Hazards Models, Radiosurgery adverse effects, Retrospective Studies, Scalp, Tumor Burden, Vision Disorders etiology, Meningeal Neoplasms surgery, Meningioma surgery, Neoplasm Recurrence, Local, Radiosurgery methods
- Abstract
Objective: Dose-response relationships for meningioma radiosurgery are poorly characterized. We evaluated determinants of local recurrence for meningiomas treated with Gamma Knife radiosurgery (GKRS), to guide future treatment approaches to optimize tumor control., Materials and Methods: A total of 101 consecutive patients (108 tumors) who underwent GKRS for benign, atypical, or malignant meningiomas between 1998 and 2011 were studied. Local recurrence was assessed. Cox proportional hazards and logistic regression analyses were used to determine the association of patient-related, tumor-related, and treatment-related characteristics with local recurrence. Acute and late toxicity was evaluated., Results: World Health Organization (2007 classification) tumor grade was I (82%), II (11%), or III (7%). Median dose was 14 Gy (range, 10 to 18 Gy) for grade I tumors and 16 Gy (range, 12 to 20 Gy) for grade II and III tumors. Median follow-up was 25 months (maximum, 17 y). Two- /5-year actuarial local control rates were 100%/98% for grade I tumors and 76%/56% for grade II/III tumors. Higher tumor grade and lower GKRS dose were associated with local failure. In this cohort, there was a 42% relative reduction in local recurrence for each 1 Gy of dose escalation., Conclusions: Treatment was well tolerated with no moderate or severe toxicity. Tumor control was excellent in benign tumors and suboptimal in higher grade tumors. Because the main determinant of local recurrence was GKRS dose, we recommend dose escalation for atypical or malignant tumors to doses between 16 and 20 Gy where critical structures allow.
- Published
- 2015
- Full Text
- View/download PDF
25. A likelihood-based approach for assessment of extra-pair paternity and conspecific brood parasitism in natural populations.
- Author
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Lemons PR, Marshall TC, McCloskey SE, Sethi SA, Schmutz JA, and Sedinger JS
- Subjects
- Animals, Anseriformes physiology, Anseriformes classification, Anseriformes genetics, Breeding, Genotyping Techniques methods, Paternity, Sexual Behavior, Animal
- Abstract
Genotypes are frequently used to assess alternative reproductive strategies such as extra-pair paternity and conspecific brood parasitism in wild populations. However, such analyses are vulnerable to genotyping error or molecular artefacts that can bias results. For example, when using multilocus microsatellite data, a mismatch at a single locus, suggesting the offspring was not directly related to its putative parents, can occur quite commonly even when the offspring is truly related. Some recent studies have advocated an ad-hoc rule that offspring must differ at more than one locus in order to conclude that they are not directly related. While this reduces the frequency with which true offspring are identified as not directly related young, it also introduces bias in the opposite direction, wherein not directly related young are categorized as true offspring. More importantly, it ignores the additional information on allele frequencies which would reduce overall bias. In this study, we present a novel technique for assessing extra-pair paternity and conspecific brood parasitism using a likelihood-based approach in a new version of program cervus. We test the suitability of the technique by applying it to a simulated data set and then present an example to demonstrate its influence on the estimation of alternative reproductive strategies., (Published 2014. This article is a U.S. Government work and is in the public domain in the USA.)
- Published
- 2015
- Full Text
- View/download PDF
26. Global fishery development patterns are driven by profit but not trophic level.
- Author
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Sethi SA, Branch TA, and Watson R
- Subjects
- Algorithms, Analysis of Variance, Animals, Commerce economics, Commerce statistics & numerical data, Conservation of Natural Resources economics, Fisheries economics, Fisheries statistics & numerical data, Food Chain, Humans, Linear Models, Oceans and Seas, Population Dynamics, Conservation of Natural Resources methods, Ecosystem, Fisheries methods, Fishes growth & development
- Abstract
Successful ocean management needs to consider not only fishing impacts but drivers of harvest. Consolidating post-1950 global catch and economic data, we assess which attributes of fisheries are good indicators for fishery development. Surprisingly, year of development and economic value are not correlated with fishery trophic levels. Instead, patterns emerge of profit-driven fishing for attributes related to costs and revenues. Post-1950 fisheries initially developed on shallow ranging species with large catch, high price, and big body size, and then expanded to less desirable species. Revenues expected from developed fisheries declined 95% from 1951 to 1999, and few high catch or valuable fishing opportunities remain. These results highlight the importance of economic attributes of species as leading indicators for harvest-related impacts in ocean ecosystems.
- Published
- 2010
- Full Text
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27. Crimean-Congo hemorrhagic fever: a first case from Abbottabad, Pakistan.
- Author
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Saleem J, Usman M, Nadeem A, Sethi SA, and Salman M
- Subjects
- Adult, Chemoprevention, Communicable Diseases, Emerging prevention & control, Fatal Outcome, Hemorrhagic Fever, Crimean diagnosis, Humans, Male, Pakistan, Antiviral Agents therapeutic use, Cross Infection prevention & control, Hemorrhagic Fever, Crimean prevention & control, Infectious Disease Transmission, Patient-to-Professional prevention & control, Ribavirin therapeutic use
- Abstract
Crimean-Congo hemorrhagic fever (CCHF) is a deadly viral disease that is endemic in some parts of Pakistan. We report here the first ever case of CCHF from Abbottabad. The patient presented with abdominal pain, hematemesis and low platelets, and died within 24hours of admission. The diagnosis was confirmed by PCR for the CCHF virus. Because of the aggressive infection-control measures adopted, secondary and nosocomial spread was prevented.
- Published
- 2009
- Full Text
- View/download PDF
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