Search

An overview of the obligate hypogean fauna in Portugal (including Azores and Madeira archipelagos) is provided, with a list of obligated cave-dwelling species and subspecies, and a general perspective about its conservation. All the available literature on subterranean Biology of Portugal since the first written record in 1870 until today has been revised. A total of 43 troglobiont and 67 stygobiont species and subspecies from 12 orders have been described so far in these areas, included in the so-called Mediterranean hotspot of biodiversity. The subterranean fauna in Portugal has been considered moderately poor with some endemic relicts and it remains to be demonstrated if this fact is still true after investing in standard surveys in cave environments. The major problems related to the conservation of cave fauna are discussed, but it is clear that the protection of this specialized fauna implies an adequate management of surface habitats.

This study aimed at evaluating the impact of a diet supplemented with Guazuma ulmifolia leaves on the productive performance and gastrointestinal parasites (GI) eggs/oocysts shedding of sheep (Pelibuey breed). Twenty-two non-lactating ewes were used. They were randomly allocated to two similar groups in terms of age, weight, body condition score (BCS), and GI parasites status. For 30 days, while the control group (G0) was given basic forage hay of Cynodon nlemfuensis, the test group (G1) received a blend of G. ulmifolia fresh foliage and C. nlemfuensis hay (respectively 30 and 70% of the diet on a DM basis). Animals were housed in separate covered pens. Quantitative coprological analysis was performed. Weight and BCS were evaluated. The daily feed amounts given and refused were measured in order to assess nutrient components intake (minerals, energy, and nitrogen). The results showed no significant differences between G1 and G0 regarding the anthelmintic and anticoccidial effects (p = 0.57, p = 0.91, respectively). Similarly, no significant overall impact on weight and BCS during the experiment (p = 0.77, p = 0.32, respectively) was observed. Nevertheless, concerning the bromatological analysis of G. ulmifolia, its use as a diet supplement to address protein and mineral deficits due to a poor-quality diet is fully justified.

We present an overview of the onetep program for linear-scaling density functional theory (DFT) calculations with large basis set (plane-wave) accuracy on parallel computers. The DFT energy is computed from the density matrix, which is constructed from spatially localized orbitals we call Non-orthogonal Generalized Wannier Functions (NGWFs), expressed in terms of periodic sinc (psinc) functions. During the calculation, both the density matrix and the NGWFs are optimized with localization constraints. By taking advantage of localization, onetep is able to perform calculations including thousands of atoms with computational effort, which scales linearly with the number or atoms. The code has a large and diverse range of capabilities, explored in this paper, including different boundary conditions, various exchange-correlation functionals (with and without exact exchange), finite electronic temperature methods for metallic systems, methods for strongly correlated systems, molecular dynamics, vibrational calculations, time-dependent DFT, electronic transport, core loss spectroscopy, implicit solvation, quantum mechanical (QM)/molecular mechanical and QM-in-QM embedding, density of states calculations, distributed multipole analysis, and methods for partitioning charges and interactions between fragments. Calculations with onetep provide unique insights into large and complex systems that require an accurate atomic-level description, ranging from biomolecular to chemical, to materials, and to physical problems, as we show with a small selection of illustrative examples. onetep has always aimed to be at the cutting edge of method and software developments, and it serves as a platform for developing new methods of electronic structure simulation. We therefore conclude by describing some of the challenges and directions for its future developments and applications.