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1. Analyzing RNA-Seq data from Chlamydia with super broad transcriptomic activation: challenges, solutions, and implications for other systems.

2. Associating transcription factors to single-cell trajectories with DREAMIT.

3. Performance Evaluation of a Commercial Automated Library Preparation System for Clinical Microbial Whole-Genome Sequencing Assays

4. Scanorama: integrating large and diverse single-cell transcriptomic datasets.

5. Molecular Analysis of Persistent and Recurrent Barretts Esophagus in the Setting of Endoscopic Therapy.

6. High phenotypic and genotypic plasticity among strains of the mushroom-forming fungus Schizophyllum commune

7. Distinct anal microbiome is correlated with anal cancer precursors in MSM with HIV.

8. Hydrolysis of ionic liquid-treated substrate with an Iocasia fonsfrigidae strain SP3-1 endoglucanase.

9. Mitogenomic analysis of a late Pleistocene jaguar from North America

10. LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads.

11. Unravelling reference bias in ancient DNA datasets.

12. Single-stranded pre-methylated 5mC adapters uncover the methylation profile of plasma ultrashort Single-stranded cell-free DNA

13. Single-cell signatures identify microenvironment factors in tumors associated with patient outcomes.

14. Circulating cell-free RNA in blood as a host response biomarker for detection of tuberculosis.

15. Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach.

16. Systematic benchmarking of single-cell ATAC-sequencing protocols.

17. SIMS: A deep-learning label transfer tool for single-cell RNA sequencing analysis

18. Improving replicability in single-cell RNA-Seq cell type discovery with Dune.

19. Isolation of Nuclei from Human Intermuscular Adipose Tissue and Downstream Single-Nuclei RNA Sequencing.

20. scCDC: a computational method for gene-specific contamination detection and correction in single-cell and single-nucleus RNA-seq data

21. Co-Mutations and Possible Variation Tendency of the Spike RBD and Membrane Protein in SARS-CoV-2 by Machine Learning.

22. Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov.

23. Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery

24. Whole genome‐wide sequence analysis of long‐lived families (Long‐Life Family Study) identifies MTUS2 gene associated with late‐onset Alzheimer's disease

25. Targeted phasing of 2–200 kilobase DNA fragments with a short-read sequencer and a single-tube linked-read library method

26. Understanding the Benefits of Different Types and Timing of Education for Mental Health: A Sequence Analysis Approach

27. Pangenome graph construction from genome alignments with Minigraph-Cactus

28. CONSULT-II: accurate taxonomic identification and profiling using locality-sensitive hashing.

29. Plasma Microbial Cell-Free DNA Sequencing in Immunocompromised Patients With Pneumonia: A Prospective Observational Study.

30. Mitochondrial genomes of Pleistocene megafauna retrieved from recent sediment layers of two Siberian lakes.

31. Phased nanopore assembly with Shasta and modular graph phasing with GFAse

32. Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen.

33. Judicial Opinion 129.

34. Trajectory inference across multiple conditions with condiments.

35. Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology

36. Leveraging gene correlations in single cell transcriptomic data

37. Single-cell RNA-seq analysis reveals cell subsets and gene signatures associated with Rheumatoid Arthritis Disease Activity

38. Detecting haplotype-specific transcript variation in long reads with FLAIR2

39. Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life

40. tauFisher predicts circadian time from a single sample of bulk and single-cell pseudobulk transcriptomic data

41. deMULTIplex2: robust sample demultiplexing for scRNA-seq

42. A compendium of genetic regulatory effects across pig tissues.

43. Viral Detection by Reverse Transcriptase Polymerase Chain Reaction in Upper Respiratory Tract and Metagenomic RNA Sequencing in Lower Respiratory Tract in Critically Ill Children With Suspected Lower Respiratory Tract Infection.

44. Single-cell RNA sequencing of a new transgenic t(8;21) preleukemia mouse model reveals regulatory networks promoting leukemic transformation

45. Revisiting the sequence symmetry analysis design.

46. Automatic activity-travel sequence generator using language, grammar, and machine theory.

47. Converging mothers' employment trajectories between East and West Germany? A focus on the 2008‐childcare‐reform.

48. Genetic diversity and evolution of porcine hemagglutinating encephalomyelitis virus in Guangxi province of China during 2021-2024.

49. Tongue microbiota in relation to the breathing preference in children undergoing orthodontic treatment.

50. Antimicrobial resistance and clonal relationships of Salmonella enterica Serovar Gallinarum biovar pullorum strains isolated in China based on whole genome sequencing.

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