6 results on '"Self, Eleanor"'
Search Results
2. Adaptive Long-Read Sequencing Reveals GGC Repeat Expansion in ZFHX3 Associated with Spinocerebellar Ataxia Type 4
- Author
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Chen, Zhongbo, Gustavsson, Emil K., Macpherson, Hannah, Anderson, Claire, Clarkson, Chris, Rocca, Clarissa, Self, Eleanor, Alvarez Jerez, Pilar, Scardamaglia, Annarita, Pellerin, David, Montgomery, Kylie, Lee, Jasmaine, Gagliardi, Delia, Luo, Huihui, Hardy, John, Polke, James, Singleton, Andrew B., Blauwendraat, Cornelis, Mathews, Katherine D., Tucci, Arianna, Fu, Ying-Hui, Houlden, Henry, Ryten, Mina, Ptáček, Louis J., Chen, Zhongbo, Gustavsson, Emil K., Macpherson, Hannah, Anderson, Claire, Clarkson, Chris, Rocca, Clarissa, Self, Eleanor, Alvarez Jerez, Pilar, Scardamaglia, Annarita, Pellerin, David, Montgomery, Kylie, Lee, Jasmaine, Gagliardi, Delia, Luo, Huihui, Hardy, John, Polke, James, Singleton, Andrew B., Blauwendraat, Cornelis, Mathews, Katherine D., Tucci, Arianna, Fu, Ying-Hui, Houlden, Henry, Ryten, Mina, and Ptáček, Louis J.
- Abstract
Background: Spinocerebellar ataxia type 4 (SCA4) is an autosomal dominant ataxia with invariable sensory neuropathy originally described in a family with Swedish ancestry residing in Utah more than 25 years ago. Despite tight linkage to the 16q22 region, the molecular diagnosis has since remained elusive. Objectives: Inspired by pathogenic structural variation implicated in other 16q-ataxias with linkage to the same locus, we revisited the index SCA4 cases from the Utah family using novel technologies to investigate structural variation within the candidate region. Methods: We adopted a targeted long-read sequencing approach with adaptive sampling on the Oxford Nanopore Technologies (ONT) platform that enables the detection of segregating structural variants within a genomic region without a priori assumptions about any variant features. Results: Using this approach, we found a heterozygous (GGC)n repeat expansion in the last coding exon of the zinc finger homeobox 3 (ZFHX3) gene that segregates with disease, ranging between 48 and 57 GGC repeats in affected probands. This finding was replicated in a separate family with SCA4. Furthermore, the estimation of this GGC repeat size in short-read whole genome sequencing (WGS) data of 21,836 individuals recruited to the 100,000 Genomes Project in the UK and our in-house dataset of 11,258 exomes did not reveal any pathogenic repeats, indicating that the variant is ultrarare. Conclusions: These findings support the utility of adaptive long-read sequencing as a powerful tool to decipher causative structural variation in unsolved cases of inherited neurological disease. © 2024 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society. © 2024 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.
- Published
- 2024
3. Clinical and Molecular Spectrum of Autosomal Recessive CA8‐Related Cerebellar Ataxia.
- Author
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Kaiyrzhanov, Rauan, Ortigoza‐Escobar, Juan Darío, Stringer, Brett W., Ganieva, Manizha, Gowda, Vykuntaraju K., Srinivasan, Varunvenkat M., Macaya, Alfons, Laner, Andreas, Onbool, Enas, Al‐Shammari, Randa, Al‐Owain, Mohammed, Deconinck, Nicolas, Vilain, Catheline, Dontaine, Pauline, Self, Eleanor, Akram, Rabia, Hussain, Ghulam, Baig, Shahid Mahmood, Iqbal, Javed, and Salpietro, Vincenzo
- Abstract
Background: Based on a limited number of reported families, biallelic CA8 variants have currently been associated with a recessive neurological disorder named, cerebellar ataxia, mental retardation, and dysequilibrium syndrome 3 (CAMRQ‐3). Objectives: We aim to comprehensively investigate CA8‐related disorders (CA8‐RD) by reviewing existing literature and exploring neurological, neuroradiological, and molecular observations in a cohort of newly identified patients. Methods: We analyzed the phenotype of 27 affected individuals from 14 families with biallelic CA8 variants (including data from 15 newly identified patients from eight families), ages 4 to 35 years. Clinical, genetic, and radiological assessments were performed, and zebrafish models with ca8 knockout were used for functional analysis. Results: Patients exhibited varying degrees of neurodevelopmental disorders (NDD), along with predominantly progressive cerebellar ataxia and pyramidal signs and variable bradykinesia, dystonia, and sensory impairment. Quadrupedal gait was present in only 10 of 27 patients. Progressive selective cerebellar atrophy, predominantly affecting the superior vermis, was a key diagnostic finding in all patients. Seven novel homozygous CA8 variants were identified. Zebrafish models demonstrated impaired early neurodevelopment and motor behavior on ca8 knockout. Conclusion: Our comprehensive analysis of phenotypic features indicates that CA8‐RD exhibits a wide range of clinical manifestations, setting it apart from other subtypes within the category of CAMRQ. CA8‐RD is characterized by cerebellar atrophy and should be recognized as part of the autosomal‐recessive cerebellar ataxias associated with NDD. Notably, the presence of progressive superior vermis atrophy serves as a valuable diagnostic indicator. © 2024 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society. [ABSTRACT FROM AUTHOR]
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- 2024
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4. A zebrafish functional genomics model to investigate the role of human A20 variants in vivo
- Author
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Cultrone, Daniele, Zammit, Nathan W., Self, Eleanor, Postert, Benno, Han, Jeremy Z. R., Bailey, Jacqueline, Warren, Joanna, Croucher, David R., Kikuchi, Kazu, Bogdanovic, Ozren, Chtanova, Tatyana, Hesselson, Daniel, and Grey, Shane T.
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- 2020
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5. The impact of the cytoplasmic ubiquitin ligase TNFAIP3gene variation on transcription factor NF-κB activation in acute kidney injury
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Rogers, Natasha M., Zammit, Nathan, Nguyen-Ngo, Danny, Souilmi, Yassine, Minhas, Nikita, Meijles, Daniel N., Self, Eleanor, Walters, Stacey N., Warren, Joanna, Cultrone, Daniele, El-Rashid, Maryam, Li, Jennifer, Chtanova, Tatyana, O’Connell, Philip J., and Grey, Shane T.
- Abstract
Nuclear factor κB (NF-κB) activation is a deleterious molecular mechanism that drives acute kidney injury (AKI) and manifests in transplanted kidneys as delayed graft function. The TNFAIP3gene encodes A20, a cytoplasmic ubiquitin ligase and a master negative regulator of the NF- κB signaling pathway. Common population-specific TNFAIP3coding variants that reduce A20’s enzyme function and increase NF- κB activation have been linked to heightened protective immunity and autoimmune disease, but have not been investigated in AKI. Here, we functionally identified a series of unique human TNFAIP3coding variants linked to the autoimmune genome-wide association studies single nucleotide polymorphisms of F127C; namely F127C;R22Q, F127C;G281E, F127C;W448C and F127C;N449K that reduce A20’s anti-inflammatory function in an NF- κB reporter assay. To investigate the impact of TNFAIP3hypomorphic coding variants in AKI we tested a mouse Tnfaip3hypomorph in a model of ischemia reperfusion injury (IRI). The mouse Tnfaip3coding variant I325N increases NF- κB activation without overt inflammatory disease, providing an immune boost as I325N mice exhibit enhanced innate immunity to a bacterial challenge. Surprisingly, despite exhibiting increased intra-kidney NF- κB activation with inflammation in IRI, the kidney of I325N mice was protected. The I325N variant influenced the outcome of IRI by changing the dynamic expression of multiple cytoprotective mechanisms, particularly by increasing NF- κB-dependent anti-apoptotic factors BCL-2, BCL-XL, c-FLIP and A20, altering the active redox state of the kidney with a reduction of superoxide levels and the enzyme super oxide dismutase-1, and enhancing cellular protective mechanisms including increased Foxp3+T cells. Thus, TNFAIP3gene variants represent a kidney and population-specific molecular factor that can dictate the course of IRI.
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- 2023
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6. A zebrafish functional genomics model to investigate the role of human A20 variantsin vivo
- Author
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Cultrone, Daniele, primary, Zammit, W. Nathan, additional, Self, Eleanor, additional, Postert, Benno, additional, Han, Jeremy ZR, additional, Bailey, Jacqueline, additional, Warren, Joanna, additional, Croucher, David R, additional, Kikuchi, Kazu, additional, Bogdanovic, Ozren, additional, Chtanova, Tatyana, additional, Hesselson, Daniel, additional, and Grey, Shane T., additional
- Published
- 2020
- Full Text
- View/download PDF
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