1. First report and whole-genome sequencing of Pseudochrobactrum saccharolyticum in Latin America.
- Author
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Pereira CR, de Jesus Sousa T, Lima da Silva A, Gonçalves Dos Santos R, Minharro S, Costa Custódio DA, Pickard DJ, O'Callaghan D, Foster JT, de Castro Soares S, Juca Ramos RT, Góes-Neto A, Matiuzzi da Costa M, Lage AP, Azevedo V, and Seles Dorneles EM
- Subjects
- Animals, Cattle, Humans, RNA, Ribosomal, 16S genetics, Phylogeny, Latin America, DNA, Bacterial genetics, Brucellaceae genetics
- Abstract
The Brucellaceae family comprises microorganisms similar both phenotypically and genotypically, making it difficult to identify the etiological agent of these infections. This study reports the first isolation, identification, and characterization of Pseudochrobactrum saccharolyticum (strain 115) from Latin America. Strain 115 was isolated in 2007 from a bovine in Brazil and was initially classified as Brucella spp. by classical microbiological tests and bcsp31 PCR. The antimicrobial susceptibility of strain 115 was tested against drugs used to treat human brucellosis by minimal inhibitory concentration test. Subsequently, the whole genome of the strain was sequenced, assembled, and characterized. Phylogenetic trees built from 16S rRNA and recA gene sequences enabled the classification of strain 115 as Pseudochrobactrum spp. Phylogenomic analysis using Single Nucleotide Polymorphisms and Average Nucleotide Identity allowed the classification of the strain as P. saccharolyticum. Additionally, a Tetra Correlation Search identified one related genome from the same species, which was compared with strain 115 by analyzing genomic islands. This is the first identification and whole-genome sequence of P. saccharolyticum in Latin America and highlights a challenge in the diagnosis of bovine brucellosis, which could be solved by including the sequencing of 16S rRNA and recA genes in routine diagnostics., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.)
- Published
- 2023
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