16 results on '"Selak, N"'
Search Results
2. The Bloom's syndrome helicase (BLM) interacts physically and functionally with p12, the smallest subunit of human DNA polymerase delta
- Author
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Selak, N, Bachrati, C Z, Shevelev, I, Dietschy, T, van Loon, B, Jacob, A, Hübscher, U, Hoheisel, J D, Hickson, I D, Stagljar, I, Selak, N, Bachrati, C Z, Shevelev, I, Dietschy, T, van Loon, B, Jacob, A, Hübscher, U, Hoheisel, J D, Hickson, I D, and Stagljar, I
- Abstract
Bloom's syndrome (BS) is a cancer predisposition disorder caused by mutation of the BLM gene, encoding a member of the RecQ helicase family. Although the phenotype of BS cells is suggestive of a role for BLM in repair of stalled or damaged replication forks, thus far there has been no direct evidence that BLM associates with any of the three human replicative DNA polymerases. Here, we show that BLM interacts specifically in vitro and in vivo with p12, the smallest subunit of human POL {delta} (hPOL {delta}). The hPOL {delta} enzyme, as well as the isolated p12 subunit, stimulates the DNA helicase activity of BLM. Conversely, BLM stimulates hPOL {delta} strand displacement activity. Our results provide the first functional link between BLM and the replicative machinery in human cells, and suggest that BLM might be recruited to sites of disrupted replication through an interaction with hPOL {delta}. Finally, our data also define a novel role for the poorly characterized p12 subunit of hPOL {delta}.
- Published
- 2008
3. Detection of TCRgama gene rearrangement in acute lymphoblastic leukemia by multiplex PCR
- Author
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Selak, N, Zadro, R, Aurer, I, Mrsić, M, Labar, B, and Stavljenić-Rukavina, A
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hemic and lymphatic diseases ,hemic and immune systems ,TCRgama rearrangement - Abstract
Detection of TCRgama gene rearrangement in acute lymphoblastic leukemia by multiplex PCR
- Published
- 1998
4. The Werner syndrome protein is required for recruitment of chromatin assembly factor 1 following DNA damage
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Jiao, R, primary, Harrigan, J A, additional, Shevelev, I, additional, Dietschy, T, additional, Selak, N, additional, Indig, F E, additional, Piotrowski, J, additional, Janscak, P, additional, Bohr, V A, additional, and Stagljar, I, additional
- Published
- 2006
- Full Text
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5. The Bloom's Syndrome Helicase Interacts Directly with the Human DNA Mismatch Repair Protein hMSH6
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Pedrazzi, G., primary, Bachrati, C. Z., additional, Selak, N., additional, Studer, I., additional, Petkovic, M., additional, Hickson, I. D., additional, Jiricny, J., additional, and Stagljar, I., additional
- Published
- 2003
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6. N-glycosylation of plasma proteins is changed in children with early onset type 1 diabetes and regulated by glycosyltransferase and complement C3 genes
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Gornik, O., Selak, N., Kaur, S., Domagoj Kifer, Pociot, F., and Morahan, G.
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N-glycosylation ,type 1 diabetes ,genome-wide association study ,glycosyltransferase ,complement C3 gene - Abstract
Background and aims: Changes in N-glycosylation of plasma proteins have been reported in adult population with type 1 diabetes, as well as was an increase in level of mannose binding lectin that triggers one of the complement activation pathways. However, glycosylation changes have never been studied at the onset of this disease, in children and adolescents. Our study is the first to correlate glycomic and genomic data in recent onset cases in order to identify glycans involved in the aetiology of the disease and their genetic regulation. Materials and methods: Plasma samples from 1, 105 children and adolescents (0-18 years) were collected within three months of diagnosis through the Danish Registry of Childhood and Adolescent Diabetes. Participants were genotyped at 183, 546 single nucleotide polymorphisms (SNPs) on the Immunochip. Both total plasma protein and IgG N-glycans were analyzed using hydrophilic interaction ultra- performance liquid chromatography, and genome wide association study on glycans was performed. Significant associations were further validated by comparing N-glycans released from total plasma proteins and IgG between 187 children with type 1 diabetes and their 244 unaffected siblings. Results: Five genome-wide significant loci associated with total plasma proteins and/or IgG N-glycans were identified. Four loci: MGAT3, MGAT5, ST6GAL1, and SYNGR1 were already associated with N-glycosylation previously. Fifth, complement C3 gene locus (C3), represents the novel finding. SNP within the exon of this gene, causing cyclic to acyclic amino acid change within the C3 protein, is associated with a decrease in oligomannose N- glycan (Man9) levels. Man9 glycan is known to be also attached to the C3 protein in the vicinity of the domain responsible for pathogen binding. When we further compared glycan profiles in children with type 1 diabetes and their healthy siblings, we found that type 1 patients had significantly higher levels of N- glycans associated with MGAT3 and MGAT5 glycosyltransferase loci, as well as levels of plasma N-glycans with terminal mannose (Man5 and Man6) and N-acetylglucosamine (GlcNAc) residues. Conclusion: Our results imply the importance of C3 gene, as well as MGAT3 and MGAT5 genes, in type 1 diabetes development. We suggest that the amino acid change within the C3 protein could increase the accessibility for enzymatic processing of the C3 protein Man9 N-glycan, which, in turn, could significantly decrease Man9 levels and potentially interfere with the complement system activation. We also showed that children with a recent diagnosis of type 1 diabetes, compared to their unaffected siblings, have increased levels of N-glycans that are targets for mannose-binding lectin, suggesting that the complement system could be implicated in type 1 diabetes pathogenesis through the mannose-binding lectin pathway.
7. The Bloom's syndrome helicase (BLM) interacts physically and functionally with p12, the smallest subunit of human DNA polymerase delta
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Selak, N, Bachrati, C Z, Shevelev, I, Dietschy, T, van Loon, B, Jacob, A, Hübscher, U, Hoheisel, J D, Hickson, I D, and Stagljar, I
- Subjects
3. Good health
8. Feasibility and outcomes of using DIALOG+ in primary care to improve quality of life and mental distress of patients with long-term physical conditions: an exploratory non-controlled study in Bosnia and Herzegovina, Colombia and Uganda.
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van Loggerenberg F, Akena D, Alinaitwe R, Birabwa-Oketcho H, Méndez CAC, Gómez-Restrepo C, Kulenović AD, Selak N, Kiseljaković M, Musisi S, Nakasujja N, Sewankambo NK, and Priebe S
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- Humans, Bosnia and Herzegovina, Colombia epidemiology, Uganda epidemiology, Feasibility Studies, Quality of Life, Primary Health Care
- Abstract
Introduction: The management of long-term physical conditions is a challenge worldwide, absorbing a majority resources despite the importance of acute care. The management of these conditions is done largely in primary care and so interventions to improve primary care could have an enormous impact. However, very little data exist on how to do this. Mental distress is frequently comorbid with long term physical conditions, and can impact on health behaviour and adherence, leading to poorer outcomes. DIALOG+ is a low-cost, patient-centred and solution-focused intervention, which is used in routine patient-clinician meetings and has been shown to improve outcomes in mental health care. The question arises as to whether it could also be used in primary care to improve the quality of life and mental health of patients with long-term physical conditions. This is particularly important for low- and middle-income countries with limited health care resources., Methods: An exploratory non-controlled multi-site trial was conducted in Bosnia and Herzegovina, Colombia, and Uganda. Feasibility was determined by recruitment, retention, and session completion. Patient outcomes (quality of life, anxiety and depression symptoms, objective social situation) were assessed at baseline and after three approximately monthly DIALOG+ sessions., Results: A total of 117 patients were enrolled in the study, 25 in Bosnia and Herzegovina, 32 in Colombia, and 60 in Uganda. In each country, more than 75% of anticipated participants were recruited, with retention rates over 90% and completion of the intervention exceeding 92%. Patients had significantly higher quality of life and fewer anxiety and depression symptoms at post-intervention follow-up, with moderate to large effect sizes. There were no significant improvements in objective social situation., Conclusion: The findings from this exploratory trial suggest that DIALOG+ is feasible in primary care settings for patients with long-term physical conditions and may substantially improve patient outcomes. Future research may test implementation and effectiveness of DIALOG+ in randomized controlled trials in wider primary care settings in low- and middle-income countries., Trial Registration: All studies were registered prospectively within the ISRCTN Registry. ISRCTN17003451, 02/12/2020 (Bosnia and Herzegovina), ISRCTN14018729, 01/12/2020 (Colombia) and ISRCTN50335796, 02/12/2020 (Uganda)., (© 2023. The Author(s).)
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- 2023
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9. HEART Score and Its Implementation in Emergency Medicine Departments in the West Balkan Region-A Pilot Study.
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Šljivo A, Mulać A, Džidić-Krivić A, Ivanović K, Radoičić D, Selimović A, Abdulkhaliq A, Selak N, Dadić I, Veljković S, Tomić S, Reiter LV, Kovačević Z, and Tomić S
- Abstract
Background: Chest pain represents a prevalent complaint in emergency departments (EDs), where the precise differentiation between acute coronary syndrome and alternative conditions assumes paramount significance. This pilot study aimed to assess the HEART score's implementation in West Balkan EDs., Methods: A retrospective analysis was performed on a prospective cohort comprising patients presenting with chest pain admitted to EDs in Sarajevo, Zenica, and Belgrade between July and December 2022., Results: A total of 303 patients were included, with 128 classified as low-risk based on the HEART score and 175 classified as moderate-to-high-risk. The low-risk patients exhibited younger age and a lower prevalence of cardiovascular risk factors. Laboratory and anamnestic findings revealed higher levels of C-reactive protein, ALT, and creatinine, higher rates of moderately to highly suspicious chest pain history, a greater number of cardiovascular risk factors, and elevated troponin levels in moderate-to-high-risk patients. Comparatively, among patients with a low HEART score, 2.3% experienced MACE, whereas those with a moderate-to high-risk HEART score had a MACE rate of 10.2%. A moderate-to-high-risk HEART score demonstrated a sensitivity of 91.2% (95%CI 90.2-93.4%) and specificity of 46.5% (95%CI 39.9-48.3%) for predicting MACE., Conclusion: This pilot study offers preliminary insights into the integration of the HEART score within the emergency departments of the West Balkan region.
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- 2023
- Full Text
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10. Interleukin 10 rs1800896 and interleukin 1B rs16944 polymorphisms and the risk of cervical cancer.
- Author
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Wagner J, Štibi S, Selak N, Alvir I, Mamić I, Marcelić L, Šušnjar L, Puljiz M, Heffer M, and Danolić D
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- Humans, Female, Genetic Predisposition to Disease, Case-Control Studies, Interleukin-1beta genetics, Interleukins genetics, Genotype, Polymorphism, Single Nucleotide, Interleukin-10 genetics, Uterine Cervical Neoplasms
- Abstract
Background: The purpose of this study was to evaluate the relationships between interleukin 10 (IL10) (rs1800896) and interleukin 1B (IL1B) (rs16944) genetic polymorphisms and the risk for cervical cancer in a cohort of women from Croatia., Methods: A case-control study of 81 patients with cervical cancer and 80 age-matched healthy controls was performed. We collected peripheral blood samples, extracted deoxiribonucleic acid (DNA), and analyzed two single-nucleotide polymorphisms (SNPs) rs1800896 and rs16944 using TaqMan assays (Fa. Thermo Fisher Scientific, Waltham, MA, USA) and real-time polymerase chain reaction (PCR). We investigated a possible association between two cytokine genetic polymorphisms and the occurrence of cervical cancer., Results: Our results showed no significant difference in the frequency of IL10 (rs1800896) and IL1B (rs16944) genotypes between the patients and the controls (χ2 test, P < 0.05)., Conclusion: In this study, no association was found between IL10 rs1800896 and IL1B rs16944 polymorphisms and cervical cancer development., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, ein Teil von Springer Nature.)
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- 2023
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11. Effects of intestinal flora on pharmacokinetics and pharmacodynamics of drugs.
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Džidić-Krivić A, Kusturica J, Sher EK, Selak N, Osmančević N, Karahmet Farhat E, and Sher F
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- Humans, Gastrointestinal Microbiome, Drug-Related Side Effects and Adverse Reactions
- Abstract
Gut microbiota is known as unique collection of microorganisms (including bacteria, archaea, eukaryotes and viruses) that exist in a complex environment of the gut. Recently, this has become one of the most popular areas of research in medicine because this plays not only an important role in disease development, but gut microbiota also influences drug pharmacokinetics. These alterations in drug pharmacokinetic pathways and drug concentration in plasma and blood often lead to an increase in the incidence of toxicological events in patients. This review aims to present current knowledge of the most commonly used drugs in clinical practice and their dynamic interplay with the host's gut microbiota as well as the mechanisms underlying these metabolic processes and the consequent effect on their therapeutic efficacy and safety. These new findings set a foundation for the development of personalized treatments specific to each metabolism, maximizing drugs' therapeutic effects and minimizing the side effects because they are one of the major limiting factors in treating patients.
- Published
- 2023
- Full Text
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12. N-glycosylation patterns of plasma proteins and immunoglobulin G in chronic obstructive pulmonary disease.
- Author
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Pavić T, Dilber D, Kifer D, Selak N, Keser T, Ljubičić Đ, Vukić Dugac A, Lauc G, Rumora L, and Gornik O
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- Aged, Female, Glycosylation, Humans, Male, Middle Aged, Polysaccharides metabolism, Risk Factors, Smoking, Blood Proteins metabolism, Immunoglobulin G metabolism, Pulmonary Disease, Chronic Obstructive blood
- Abstract
Background: Chronic obstructive pulmonary disease (COPD) is a complex condition, whose diagnosis requires spirometric assessment. However, considering its heterogeneity, subjects with similar spirometric parameters do not necessarily have the same functional status. To overcome this limitation novel biomarkers for COPD have been investigated. Therefore, we aimed to explore the potential value of N-glycans as COPD biomarkers and to examine the individual variation of plasma protein and immunoglobulin G (IgG) glycosylation profiles in subjects with COPD and healthy controls., Methods: Both the total plasma protein and IgG N-glycome have been profiled in the total of 137 patients with COPD and 95 matching controls from Croatia. Replication cohort consisted of 61 subjects with COPD and 148 controls recruited at another Croatian medical centre., Results: Plasma protein N-glycome in COPD subjects exhibited significant decrease in low branched and conversely, an increase in more complex glycan structures (tetragalactosylated, trisialylated, tetrasialylated and antennary fucosylated glycoforms). We also observed a significant decline in plasma monogalactosylated species, and the same change replicated in IgG glycome. N-glycans also showed value in distinguishing subjects in different COPD GOLD stages, where the relative abundance of more complex glycan structures increased as the disease progressed. Glycans also showed statistically significant associations with the frequency of exacerbations and demonstrated to be affected by smoking, which is the major risk factor for COPD development., Conclusions: This study showed that complexity of glycans associates with COPD, mirroring also the disease severity. Moreover, changes in N-glycome associate with exacerbation frequency and are affected by smoking. In general, this study provided new insights into plasma protein and IgG N-glycome changes occurring in COPD and pointed out potential novel markers of the disease progression and severity.
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- 2018
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13. Correction to: Increased plasma N-glycome complexity is associated with higher risk of type 2 diabetes.
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Keser T, Gornik I, Vučković F, Selak N, Pavić T, Lukić E, Gudelj I, Gašparović H, Biočina B, Tilin T, Wennerström A, Männistö S, Salomaa V, Havulinna A, Wang W, Wilson JF, Chaturvedi N, Perola M, Campbell H, Lauc G, and Gornik O
- Abstract
The authors regret that Nish Chaturvedi's name was spelt incorrectly in the author list. The details given in this correction are correct.
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- 2018
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14. Increased plasma N-glycome complexity is associated with higher risk of type 2 diabetes.
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Keser T, Gornik I, Vučković F, Selak N, Pavić T, Lukić E, Gudelj I, Gašparović H, Biočina B, Tilin T, Wennerström A, Männistö S, Salomaa V, Havulinna A, Wang W, Wilson JF, Chaturvedi N, Perola M, Campbell H, Lauc G, and Gornik O
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- Adult, Aged, Aged, 80 and over, Blood Glucose metabolism, Diabetes Mellitus, Type 2 metabolism, Female, Glycated Hemoglobin metabolism, Glycosylation, Humans, Hyperglycemia metabolism, Male, Middle Aged, Polysaccharides blood, Polysaccharides metabolism, Pregnancy, Young Adult, Diabetes Mellitus, Type 2 blood, Hyperglycemia blood
- Abstract
Aims/hypothesis: Better understanding of type 2 diabetes and its prevention is a pressing need. Changes in human plasma N-glycome are associated with many diseases and represent promising diagnostic and prognostic biomarkers. Variations in glucose metabolism directly affect glycosylation through the hexosamine pathway but studies of plasma glycome in type 2 diabetes are scarce. The aim of this study was to determine whether plasma protein N-glycome is changed in individuals who are at greater risk of developing type 2 diabetes., Methods: Using a chromatographic approach, we analysed N-linked glycans from plasma proteins in two populations comprising individuals with registered hyperglycaemia during critical illness (increased risk for development of type 2 diabetes) and individuals who stayed normoglycaemic during the same condition: AcuteInflammation (59 cases vs 49 controls) and AcuteInflammation Replication (52 cases vs 14 controls) populations. N-glycome was also studied in individuals from FinRisk (37 incident cases of type 2 diabetes collected at baseline vs 37 controls), Orkney Complex Disease Study (ORCADES; 94 individuals with HbA
1c > 6.5% [47.5 mmol/mol] vs 658 controls) and Southall and Brent Revisited (SABRE) cohort studies (307 individuals with HbA1c > 6.5% [47.5 mmol/mol] vs 307 controls)., Results: Individuals with increased risk for diabetes type 2 development (AcuteInflammation and AcuteInflammation Replication populations), incident cases of type 2 diabetes collected at baseline (FinRisk population) and individuals with elevated HbA1c (ORCADES and SABRE populations) all presented with increased branching, galactosylation and sialylation of plasma protein N-glycans and these changes were of similar magnitude., Conclusions/interpretation: Increased complexity of plasma N-glycan structures is associated with higher risk of developing type 2 diabetes and poorer regulation of blood glucose levels. Although further research is needed, this finding could offer a potential new approach for improvement in prevention of diabetes and its complications.- Published
- 2017
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15. Recruitment of the RNA helicase RHAU to stress granules via a unique RNA-binding domain.
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Chalupníková K, Lattmann S, Selak N, Iwamoto F, Fujiki Y, and Nagamine Y
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- Adenosine Triphosphatases chemistry, Amino Acid Sequence, Cross-Linking Reagents pharmacology, Escherichia coli metabolism, Eukaryotic Initiation Factor-4A chemistry, Fluorescence Recovery After Photobleaching, HeLa Cells, Humans, Kinetics, Microscopy, Fluorescence methods, Molecular Sequence Data, Protein Binding, Protein Structure, Tertiary, Sequence Homology, Amino Acid, DEAD-box RNA Helicases metabolism, RNA Helicases chemistry
- Abstract
In response to environmental stress, the translation machinery of cells is reprogrammed. The majority of actively translated mRNAs are released from polysomes and driven to specific cytoplasmic foci called stress granules (SGs) where dynamic changes in protein-RNA interaction determine the subsequent fate of mRNAs. Here we show that the DEAH box RNA helicase RHAU is a novel SG-associated protein. Although RHAU protein was originally identified as an AU-rich element-associated protein involved in urokinase-type plasminogen activator mRNA decay, it was not clear whether RHAU could directly interact with RNA. We have demonstrated that RHAU physically interacts with RNA in vitro and in vivo through a newly identified N-terminal RNA-binding domain, which was found to be both essential and sufficient for RHAU localization in SGs. We have also shown that the ATPase activity of RHAU plays a role in the RNA interaction and in the regulation of protein retention in SGs. Thus, our results show that RHAU is the fourth RNA helicase detected in SGs, after rck/p54, DDX3, and eIF4A, and that its association with SGs is dynamic and mediated by an RHAU-specific RNA-binding domain.
- Published
- 2008
- Full Text
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16. The Bloom's syndrome helicase (BLM) interacts physically and functionally with p12, the smallest subunit of human DNA polymerase delta.
- Author
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Selak N, Bachrati CZ, Shevelev I, Dietschy T, van Loon B, Jacob A, Hübscher U, Hoheisel JD, Hickson ID, and Stagljar I
- Subjects
- Binding Sites, Cell Line, Transformed, DNA Helicases analysis, DNA Helicases chemistry, DNA Polymerase III analysis, DNA Polymerase III chemistry, DNA Replication, Humans, Protein Subunits analysis, Protein Subunits chemistry, Protein Subunits metabolism, RecQ Helicases, DNA Helicases metabolism, DNA Polymerase III metabolism
- Abstract
Bloom's syndrome (BS) is a cancer predisposition disorder caused by mutation of the BLM gene, encoding a member of the RecQ helicase family. Although the phenotype of BS cells is suggestive of a role for BLM in repair of stalled or damaged replication forks, thus far there has been no direct evidence that BLM associates with any of the three human replicative DNA polymerases. Here, we show that BLM interacts specifically in vitro and in vivo with p12, the smallest subunit of human POL delta (hPOL delta). The hPOL delta enzyme, as well as the isolated p12 subunit, stimulates the DNA helicase activity of BLM. Conversely, BLM stimulates hPOL delta strand displacement activity. Our results provide the first functional link between BLM and the replicative machinery in human cells, and suggest that BLM might be recruited to sites of disrupted replication through an interaction with hPOL delta. Finally, our data also define a novel role for the poorly characterized p12 subunit of hPOL delta.
- Published
- 2008
- Full Text
- View/download PDF
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