102 results on '"Seed tree"'
Search Results
2. Gene Flow and Migration
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Finkeldey, Reiner and Hattemer, Hans H.
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- 2007
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3. Modelling natural regeneration of European beech in Saxony, Germany: identifying factors influencing the occurrence and density of regeneration
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Sven Martens, Sven Wagner, Maximilian Axer, and Robert Schlicht
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0106 biological sciences ,Forest inventory ,Seed tree ,010504 meteorology & atmospheric sciences ,biology ,fungi ,Forestry ,Plant Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Basal area ,Plant ecology ,Fagus sylvatica ,Environmental science ,Regeneration (ecology) ,Beech ,0105 earth and related environmental sciences ,Waterlogging (agriculture) - Abstract
The potential utilisation of natural regeneration of European beech (Fagus sylvatica L.) for forest conversion has received little attention to date. Ecological knowledge is necessary to understand and predict successful natural regeneration of beech. The objective of this study was to improve understanding of what drives the occurrence of beech regeneration and, once regeneration is present, what drives its density. In the study, we utilised a forest inventory dataset provided by Sachsenforst, the state forestry service of Saxony, Germany. The dataset was derived from 8725 permanent plots. Zero-altered negative binomial models (ZANB) with spatial random effects were used to analyse factors influencing occurrence and density simultaneously. The results provided by the spatial ZANB models revealed that the probability of the occurrence of beech regeneration is highly dependent on seed availability, i.e. dependent on source trees in close proximity to a plot. The probability of beech regeneration rises with the increasing diameter of a potential seed tree and decreases with increasing distance to the nearest potential seed source. The occurrence of regeneration is affected by overstorey composition and competition exerted by spruce regeneration. Where sites are affected by groundwater or temporary waterlogging, the impact on the occurrence of regeneration is negative. Although distance to the nearest potential seed source has an influence on occurrence, this variable exerts no influence on density. A high regeneration density arises in conjunction with a high beech basal area in the overstorey. Beech regeneration density, but not occurrence, is negatively affected by browsing intensity. These variables can be used to predict the occurrence and density of beech regeneration in space to a high level of precision. The established statistical tool can be used for decision-making when planning forest conversion using natural regeneration.
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- 2021
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4. Performing Local Similarity Searches with Variable Length Seeds
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Csűrös, Miklós, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Sahinalp, Suleyman Cenk, editor, Muthukrishnan, S., editor, and Dogrusoz, Ugur, editor
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- 2004
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5. Similar genetic diversity but increased differentiation revealed among a 58-year-old Pinus massoniana seed-tree stand and its progenies generated at different ages
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Zhang‑Qi Yang, Wei‑Xin Jiang, Tian‑Dao Bai, Jin‑Pei Ye, and Mei‑Xi Chen
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0106 biological sciences ,Genetic diversity ,education.field_of_study ,Pinus massoniana ,Seed tree ,010504 meteorology & atmospheric sciences ,biology ,Pollination ,Population ,Selfing ,Forestry ,Plant Science ,medicine.disease_cause ,biology.organism_classification ,01 natural sciences ,Gene flow ,Agronomy ,Pollen ,medicine ,education ,010606 plant biology & botany ,0105 earth and related environmental sciences - Abstract
The genetic diversity and mating status of seed production stands are crucial factors impacting the genetic quality and ecological stability of progeny plantations. The genetic homogeneity of seeds collected from a seed production population in different years has not yet been clearly described. In this study, the genetic diversity and differentiation of a seed-tree stand of 58-year-old Pinus massoniana (P1959) and four-open pollinated plantations of its progeny (OS1996, OS2000, OS2006 and OS2015) were determined by using microsatellite markers. The results showed that similar high genetic diversity was preserved in the seed-tree stand and its four progenies. This implied that current artificial seed harvesting from the seed-tree stand for reforestation does not lead to a significant reduction in genetic diversity; the F index across most loci was significantly greater than zero, indicating population homozygote excess. The pairwise genetic differentiation of the five populations ranged from 0.035 to 0.075, among which OS2015 was the most differentiated from the parent. The differentiation between the parental population and its progeny seemed to increase with increasing age of the seed-trees. This implied that a limited pollination coupled with variable within-stand pollen availability has created opportunities for both self- and foreign pollination to be successful in various periods, resulting in a seemingly paradoxical scenario of both high selfing and gene flow, ultimately resulting in gradually increasing differences in the gene frequency composition between the parental population and its progeny. Management considerations in addressing these problems in similar seed production stands were discussed.
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- 2021
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6. Genetic impacts of different silvicultural practices in native eucalypt forests
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Glaubitz, Jeffrey C., Strk, Jimena, Moran, Gavin F., and Mátyás, Csaba, editor
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- 1999
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7. Restrictions on natural regeneration of storm-felled spruce sites by silver birch (Betula pendula Roth) through limitations in fructification and seed dispersal
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Franka Huth, Sven Wagner, Nico Frischbier, and Katharina Tiebel
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0106 biological sciences ,Fructification ,Seed tree ,010504 meteorology & atmospheric sciences ,Seed dispersal ,Forest management ,Forestry ,Plant Science ,Biology ,010603 evolutionary biology ,01 natural sciences ,Crop ,Plant ecology ,Agronomy ,Betula pendula ,Biological dispersal ,0105 earth and related environmental sciences - Abstract
Particularly after disturbance events, the early successional colonistBetula pendulaRoth is experiencing renewed silvicultural interest with respect to the natural regeneration of large disturbed forest areas. In a case study, we therefore studied the seed dispersal ofB. pendulafrom two adjacent spruce stands to large storm-felled sites at high altitudes in the Thuringian Forest (Germany) over a 2-year period. We applied inverse modelling to describe the distance-dependent seed distribution using a negative exponential kernel and seed production function of birch seed trees. Maximum seed numbers of 2015 n m−2(non-mast year) and 9557 n m−2(medium year) occurred within 40‒50 m distance to a seed tree. The predicted seed production rate of a birch seed tree with a reference dbh of 20 cm was approximately 350,000 n tree−1(non-mast year) and 1,500,000 n tree−1(medium year). Regardless of the seed crop, the dispersal distances were similar in both years. The isotropic model showed mean dispersal distances of 86 and 97 m (uphill) and 367 and 380 m (downhill) for the 2 years of seed sampling. No directionality in seed dispersal was found. The findings showed birch seed dispersal to be strongly influenced by site inclination, seed tree position (valley, slope or plateau) and distance to the storm-felled site. Furthermore, the seed shadow is influenced by the number of seed sources. Therefore, risk-adapted forest management should include the ‘spatial optimization’ of birch seed trees, ideally creating a network of small seed tree groups scattered more or less regularly within pure conifer forests.
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- 2020
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8. Growth and water potential forPinus patula Schltdl. & Cham. seedlings in the ejido Carbonero Jacales, Huayacocotla, Veracruz
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Valentín J. Reyes-Hernández, Armando Falfán-Cortés, Aurelio M. Fierros-González, J. Jesús Vargas-Hernández, Alejandro Velázquez-Martínez, and Gustavo Ramírez-Valverde
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Pinus patula ,Horticulture ,Water balance ,Seed tree ,Ecology ,Dry season ,Paired comparison ,Forestry ,Natural regeneration ,Biology ,biology.organism_classification ,Annual growth % ,Water deficit - Abstract
Introduction: Regeneration of forest stands under management is one of the most relevant silvicultural practices for forest cultivation. Objective: To compare growth and water balance for both naturally regenerated and planted seedlings in Pinus patula Schltdl. &Cham. stands harvested with the seed tree method in the ejido Carbonero Jacales, Huayacocotla, Veracruz. Materials and methods: Four sites per stand with natural regeneration and planted seedlings were selected for paired comparison. Origin and age of seedlings were recorded at each site, water potential was measured throughout the day during the dry season in 2019, also annual height and diameter growth at the base of the stem during the period 2018-2019. Results: Naturally regenerated seedlings had significantly (P ≤ 0.01) higher annual height growth (73.8 ± 12.29 cm) compared to planted seedlings (60.8 ± 12.39 cm); the same was for diameter at stem base (20.52 ± 3.51 vs. 14.76 ± 3.54 mm). Natural regeneration also showed significantly higher (P ≤ 0.05) diurnal water deficit recovery capacity (-0.90 MPa) compared to planted seedlings (-1.06 MPa). Conclusion:P. patula naturally regenerated seedlings had better annual growth and better physiological performance in root, which allowed a faster recovery to diurnal water deficit in foliage.
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- 2020
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9. THE PHYLOGENETIC RELATIONSHIPS AMONG REQUIEM AND HAMMERHEAD SHARKS: INFERRING PHYLOGENY WHEN THOUSANDS OF EQUALLY MOST PARSIMONIOUS TREES RESULT
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Gavin J. P. Naylor
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Paraphyly ,Monophyly ,Seed tree ,Phylogenetic tree ,Phylogenetics ,Evolutionary biology ,Zoology ,Taxonomy (biology) ,Biology ,Clade ,Ecology, Evolution, Behavior and Systematics ,Cladistics - Abstract
Protein variation among 37 species of carcharhiniform sharks was examined at 17 presumed loci. Evolutionary trees were inferred from these data using both cladistic character and a distance Wagner analysis. Initial cladistic character analysis resulted in more than 30 000 equally parsimonious tree arrangements. Randomization tests designed to evaluate the phylogenetic information content of the data suggest the data are highly significantly different from random in spite of the large number of parsimonious trees produced. Different starting seed trees were found to influence the kind of tree topologies discovered by the heuristic branch swapping algorithm used. The trees generated during the early phases of branch swapping on a single seed tree were found to be topologically similar to those generated throughout the course of branch swapping. Successive weighting increased the frequency and the consistency with which certain clades were found during the course of branch swapping, causing the semi-strict consensus to be more resolved. Successive weighting also appeared resilient to the bias associated with the choice of initial seed tree causing analyses seeded with different trees to converge on identical final character weights and the same semi-strict consensus tree. The summary cladistic character analysis and the distance Wagner analysis both support the monophyly of two major clades, the genus Rhizoprionodon and the genus Sphyrna.. The distance Wagner analysis also supports the monophyly of the genus Carcharhinus. However, the cladistic analysis suggests that Carcharhinus is a paraphyletic group that includes the blue shark Prionace glauca.
- Published
- 2021
10. Predicting conifer establishment post wildfire in mixed conifer forests of the North American Mediterranean-climate zone.
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Welch, Kevin R., Safford, Hugh D., and Young, Truman P.
- Subjects
CONIFEROUS forests ,FIRE ecology ,FORESTRY & climate ,CONIFER seed ,FORESTS & forestry - Abstract
Due to fire suppression policies, timber harvest, and other management practices over the last century, many low- to mid-elevation forests in semiarid parts of the western United States have accumulated high fuel loads and dense, multi-layered canopies that are dominated by shade-tolerant and fire-sensitive conifers. To a great extent, the future status of western US forests will depend on tree species' responses to patterns and trends in fire activity and fire behavior and postfire management decisions. This is especially the case in the North American Mediterranean-climate zone ( NAMCZ), which supports the highest precipitation variability in North America and a 4- to 6-month annual drought, and has seen greater-than-average increases in air temperature and fire activity over the last three decades. We established 1490 survey plots in 14 burned areas on 10 National Forests across a range of elevations, forest types, and fire severities in the central and northern NAMCZ to provide insight into factors that promote natural tree regeneration after wildfires and the differences in postfire responses of the most common conifer species. We measured site characteristics, seedling densities, woody shrub, and tree growth. We specified a zero-inflated negative binomial mixed model with random effects to understand the importance of each measured variable in predicting conifer regeneration. Across all fires, 43% of all plots had no conifer regeneration. Ten of the 14 fires had median conifer seedling densities that did not meet Forest Service stocking density thresholds for mixed conifer forests. When regeneration did occur, it was dominated by shade-tolerant but fire-sensitive firs ( Abies spp.), Douglas-fir ( Pseudotsuga menziesii) and incense cedar ( Calocedrus decurrens). Seedling densities of conifer species were lowest in sites that burned at high severity, principally due to the biotic consequences of high severity fire, for example, increased distances to live seed trees and competition with fire-following shrubs. We developed a second model specifically for forest managers and restoration practitioners who work in yellow pine and mixed conifer forests in the central NAMCZ to assess potential natural regeneration in the years immediately following a fire, allowing them to prioritize which areas may need active postfire forest restoration and supplemental planting. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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11. Effects of seed trees age and one year seed storage on seed germination of Sorbus torminalis
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Kambiz Espahbodi, Hosayn Mirzaie–Nodoushan, Mas'oud Tabari, Moslem Akbarinia, and Yahya Dehghan Shooraki
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Sorbus torminalis ,seed tree ,Age ,Germination ,STORAGE ,Forestry ,SD1-669.5 - Abstract
In 2000, fourty seed trees which were located at Sanghdeh Forest of Caspian Region with altitude ranged between 1700 to 2300 m-above sea level, were selected. 200 seeds were collected from each tree, subsequently. The seeds were sown in 2000 and in 2001 repeatedly, in plastic bage containg forest soil and kept in a forest nursery located at the same forest at 1550 m. above sea level altitude. Seed germination and seedling survival was measured in 2000 and 2001. According to T-Test data analysis, there were significant differences between seed germinatin and seedling survival of the treatments in both years. Total seed germination (TSG) in 2000 was 9.22% more than TSG in 2001. Seed germination was correlated significantly and negatively with the seed trees age and diameter. Seed trees with moderate age and at diameter class of 30 cm, performed the highest percentage of seed germination in 2000 (without seed storage). There was minimum reduction in seed germination for seeds collected from trees at moderate diameter class and stored for one year.
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- 2003
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12. Group-selection silviculture conditionally enhances recruitment of yellow birch in a shade-tolerant hardwood forest
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Ken A. Elliott, Jason A. Shabaga, and Trevor A. Jones
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0106 biological sciences ,Yellow birch ,Seed tree ,media_common.quotation_subject ,Forestry ,Edaphic ,15. Life on land ,Management, Monitoring, Policy and Law ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Competition (biology) ,Agronomy ,Germination ,Hardwood ,Shade tolerance ,Silviculture ,010606 plant biology & botany ,Nature and Landscape Conservation ,media_common - Abstract
Wide-spread use of single-tree harvest methods has inhibited regeneration of yellow birch in shade-tolerant hardwood forests. Shelterwood harvesting can improve recruitment, but incurs higher costs, longer harvesting cycles, and produces an even-aged structure. Group selection (GS) harvesting provides an alternative method with the benefits of single-tree selection (STS; mixed-ages, shorter cycles), yet produces larger gaps that may favour recruitment of mid/intolerant tree species. Recent GS trial studies have shown promise, but results vary and differences in edaphic conditions and competition dynamics associated with climate, historical management, and season of harvesting may influence responses. We evaluated the yellow birch recruitment efficacy of GS in an Ontario shade-tolerant hardwood forest by comparing change in regeneration as percent ground cover (stems 50 cm) over ten years in STS harvested and unharvested forest relative to two types of GS gaps: “typical” gaps placed in suitable microsites, and indiscriminate “systematic” interval gaps harvested on a grid. Autumn-harvested gaps established 2–4× more yellow birch cover and recruited 7–10× more large stems by year ten than STS and winter harvested gaps; unharvested controls remained unchanged. Typical gaps recruited 3× more stems than systematic gaps in autumn-only. Soil disturbance and seed tree proximity were correlated to establishment of yellow birch cover in year 1, which predicted large stem recruitment by year 10. Winter-harvesting favoured sugar maple cover in year 1, which predicted lower yellow birch recruitment by year 10. These results indicate that autumn-harvested typical gaps optimised germination and growth conditions for yellow birch (light availability, soil disturbance, reduced competition, seed proximity/dispersal). Consequently, GS harvesting in autumn can be considered an effective alternative to shelterwood harvesting for yellow birch recruitment in poorly-represented shade-tolerant hardwood stands.
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- 2019
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13. Influence of the seed tree method on the diversity of regeneration in a mixed forest in Durango, Mexico
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Nelson I. Deras-Ávila, José Guadalupe Colín, Francisco J. Hernández, and Ana G. Deras-Ávila
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Cutting ,Seed tree ,Geography ,Ecology ,Rarefaction (ecology) ,Forestry ,Species richness ,Regeneration (ecology) ,Tree species ,Ciénega - Abstract
Introduction:Forest managers need to know the impact of regeneration cuts on tree species diversity in order to conserve it. Objective:To evaluate changes in tree species richness and diversity after applying the seed tree method in six communities. Materials and methods: The communities of Cienega Grande, Las Cienegas, La Colmena, El Venado, Los Bajios and Pino Gordo of the Pueblo Nuevo ejido, Durango, were divided into three plots called: a) regeneration in seed trees cuttings (RST); b) regeneration in adult trees (RAT); and c) adult trees (AT). Starting from the center of each RST plot, and following the cardinal and subcardinal points, eight sites of 25 m2 and 0.1 ha were located to record the regeneration and adult tree species, respectively. Species richness indicators (Shannon-Wiener, Simpson, Pielou and Sorensen) were estimated to characterize the plots by community and were compared with t-tests and rarefaction analysis. Results and Discussion. Twelve species were recorded in the study area, of which 11 are found as a renewal of seed trees. Species richness in the RST plots with respect to that of AT was equal in the Cienega Grande, El Venado and La Colmena communities, and higher in Las Cienegas and Los Bajios. The Shannon-Wiener and Simpson indices were higher in Pino Gordo, Los Bajios and El Venado. The Sorensen index ranges from 0.67 to 1.0, indicating high species similarity among plots. Conclusions. The seed tree method in a mixed forest ensures the continuity of tree species diversity.
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- 2019
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14. Partial Retention of Legacy Trees Protect Mycorrhizal Inoculum Potential, Biodiversity, and Soil Resources While Promoting Natural Regeneration of Interior Douglas-Fir
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Joseph Timmermans, Teah Schacter, Dominique Cook, Suzanne W. Simard, W. Jean Roach, Arianna Murphy-Steed, Aidan Zickmantel, Gaelin Armstrong, Jacob Beauregard, Nava S. Sachs, Lia Hart, Danica Law, Hannah R. Sachs, Kaya M. Fraser, Eva N. Snyder, Julia Burkart, Morgan Tien, Liam Jones, and Oliver R. J. Heath
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0106 biological sciences ,Clearcutting ,010504 meteorology & atmospheric sciences ,Biodiversity ,mycorrhiza ,Environmental Science (miscellaneous) ,Biology ,010603 evolutionary biology ,01 natural sciences ,partial cutting ,Mycorrhiza ,lcsh:Forestry ,lcsh:Environmental sciences ,0105 earth and related environmental sciences ,Nature and Landscape Conservation ,biodiversity ,Forest floor ,lcsh:GE1-350 ,Global and Planetary Change ,Seed tree ,Ecology ,Douglas-fir ,carbon ,Forestry ,Understory ,biology.organism_classification ,Agronomy ,Seedling ,regeneration ,Western Hemlock ,lcsh:SD1-669.5 - Abstract
Clearcutting reduces proximity to seed sources and mycorrhizal inoculum potential for regenerating seedlings. Partial retention of legacy trees and protection of refuge plants, as well as preservation of the forest floor, can maintain mycorrhizal networks that colonize germinants and improve nutrient supply. However, little is known of overstory retention levels that best protect mycorrhizal inoculum while also providing sufficient light and soil resources for seedling establishment. To quantify the effect of tree retention on seedling regeneration, refuge plants, and resource availability, we compared five harvesting methods with increasing retention of overstory trees (clearcutting (0% retention), seed tree (10% retention), 30% patch retention, 60% patch retention, and 100% retention in uncut controls) in an interior Douglas-fir-dominated forest in British Columbia. Regeneration increased with proximity to legacy trees in partially cut forests, with increasing densities of interior Douglas-fir, western redcedar, grand fir, and western hemlock seedlings with overstory tree retention. Clearcutting reduced cover of ectomycorrhizal refuge plants (from 80 to 5%) while promoting arbuscular mycorrhizal plants the year after harvest. Richness of shrubs, herbs, and mosses declined with increasing harvesting intensity, but tree richness remained at control levels. The presence of legacy trees in all partially cut treatments mitigated these losses. Light availability declined with increasing overstory cover and proximity to leave trees, but it still exceeded 1,000 W m−2 in the clearcut, seed tree and 30% retention treatments. Increasing harvesting intensity reduced aboveground and belowground C stocks, particularly in live trees and the forest floor, although forest floor losses were also substantial where thinning took place in the 60% retention treatment. The loss of forest floor carbon, along with understory plant richness with intense harvesting was likely associated with a loss of ectomycorrhizal inoculum potential. This study suggests that dispersed retention of overstory trees where seed trees are spaced ~10–20 m apart, and aggregated retention where openings are
- Published
- 2021
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15. PENDUGAAN POTENSI PEREKRUTAN PERMUDAAN ALAM OLEH POHON INDUK DI HUTAN MANGROVE IUPHHK-HA PT. BUMWI, TELUK BINTUNI, PAPUA BARAT Potential Estimation of Seedling Recruitment by Seed Trees in Mangrove Forest IUPHHKHA PT. BUMWI Bintuni Bay, West Papua
- Author
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Mia Afriyani and Istomo
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Vegetation analysis ,Seed tree ,biology ,Seedling ,Forestry ,Natural regeneration ,Mangrove ,biology.organism_classification ,Silviculture - Abstract
Since 1978 one of the legal silviculture systems in Indonesian regard to managing mangrove forest is seed tree method. The ability of this silviculture system to recruit the seeds to fulfill the regeneration is one of the importantaspects. The research is conducted to get the information about regeneration condition and the ability of seed tree method to recruit the regeneration in any various plot with different agecutting. Vegetation analysis for naturalregeneration (seedlings and saplings) were conducted at four different age logged-over area with the total 640 plots. The plot size is 78.5 m2. The result showed that existence of seed tree can affect the type of regeneration for seedlings recruitment with percentage between 59.52% to 83.37%.Key words: mangrove, natural regeneration, seed tree, seedling recruitment
- Published
- 2018
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16. Environmental Influences on Density and Height Growth of Natural Ponderosa Pine Regeneration following Wildfires
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Eva K. Strand, Andrew T. Hudak, Beth A. Newingham, Penelope Morgan, and Darcy H. Hammond
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QC1-999 ,Environmental Science (miscellaneous) ,fire effects ,Pinus ponderosa ,Earth and Planetary Sciences (miscellaneous) ,medicine ,Precipitation ,forest resilience ,Safety, Risk, Reliability and Quality ,Abiotic component ,Biotic component ,Seed tree ,biology ,Physics ,post-fire recovery ,Forestry ,Building and Construction ,Seasonality ,biology.organism_classification ,Snow ,medicine.disease ,burn severity ,Agronomy ,Productivity (ecology) ,Seedling ,Environmental science ,Safety Research ,forest fire - Abstract
Over the past century the size and severity of wildfires, as well as post-fire recovery processes (e.g., seedling establishment), have been altered from historical levels due to management policies and changing climate. Tree seedling establishment and growth drive future overstory tree dynamics after wildfire. Post-fire tree regeneration can be highly variable depending on burn severity, pre-fire forest condition, tree regeneration strategies, and climate, however, few studies have examined how different abiotic and biotic factors impact seedling density and growth and the interactions among those factors. We measured seedling density and height growth in the period 2015–2016 on three wildfires that burned in ponderosa pine (Pinus ponderosa) forests in the period 2000–2007 across broad environmental and burn severity gradients. Using a non-parametric multiplicative regression model, we found that downed woody fuel load, duff depth, and fall precipitation best explained variation in seedling density, while the distance to nearest seed tree, a soil productivity index, duff depth, and spring precipitation as snow best explained seedling height growth. Overall, results highlight the importance of burn severity and post-fire climate in tree regeneration, although the primary factors influencing seedling density and height growth vary. Drier conditions and changes to precipitation seasonality have the potential to influence tree establishment, survival, and growth in post-fire environments, which could lead to significant impacts for long-term forest recovery.
- Published
- 2021
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17. Effects of partial harvesting on vertebrate species associated with late-successional forests in Ontario's boreal region.
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Vanderwel, M. C., Mills, S. C., and Malcolm, J. R.
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HARVESTING ,VERTEBRATES ,FORESTS & forestry ,HABITATS ,PINACEAE - Abstract
Copyright of Forestry Chronicle is the property of Canadian Institute of Forestry and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2009
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18. Bulk insertion for R-trees by seeded clustering
- Author
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Lee, Taewon, Moon, Bongki, and Lee, Sukho
- Subjects
- *
COPYING , *ALGORITHMS , *DATABASES , *ALGEBRA - Abstract
Abstract: We propose a scalable technique called Seeded Clustering that allows us to maintain R-tree indices by bulk insertion while keeping pace with high data arrival rates. Our approach uses a seed tree, which is copied from the top k levels of a target R-tree, to classify input data objects into clusters. We then build an R-tree for each of the clusters and insert the input R-trees into the target R-tree in bulk one at a time. We present detailed algorithms for the seeded clustering and bulk insertion. The experimental results show that the bulk insertion by seeded clustering outperforms the previously known methods. [Copyright &y& Elsevier]
- Published
- 2006
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19. The effect of site preparation on seed tree regeneration of drained Scots pine stands in Finland
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Jyrki Hytönen, Hannu Hökkä, and Markku Saarinen
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Crop ,Seed tree ,Agronomy ,Seedling ,Scots pine ,Maximum density ,Forestry ,Natural regeneration ,Biology ,Northern finland ,biology.organism_classification ,Drained peatland - Abstract
We studied the success of natural regeneration eight years after seed tree cutting on four drained peatland Scots pine stands in central and northern Finland (Parkano, Sievi, Vaala, Simo) when retaining ca. 50 Scots pine stems ha-1 followed by site preparation. The total number and the number of crop seedlings and their mean height were investigated by species and methods of site preparation (control, scalping, mounding). The results showed that the total seedling numbers were very high (9,100 – 51,000 ha-1) in all sites and treatments. The share of downy birch seedlings was 64 –76 %. The total number of crop seedlings varied from 1,450 to 2,000 ha-1 (2,000 maximum density accepted), with number of Scots pine seedlings varying from 600 in Parkano to 1,950 ha-1 in Sievi. Site preparation increased the number of pine crop seedlings on two of the four sites: at Parkano by 900 – 1,100 seedlings ha-1 and at Vaala by 600 – 800 seedlings ha-1. On average, the number of pine crop seedlings was slightly higher and that for all birch seedlings clearly higher when site preparation was applied. About 22 – 81% of crop seedlings were grown in a prepared surface in scalped plots and 75-91% on mounded plots. The mean height of the crop seedlings was not significantly affected by the site preparation treatment. With respect to the minimum requirements set for the regeneration result required by forest legislation, seed tree cutting appeared to provide sufficient regeneration in eight years in terms of the total seedling density and the number of crop seedlings when downy birches were included. The beneficial effect of soil preparation was seen in the increased share of Scots pine crop seedlings.
- Published
- 2019
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20. A New Phylogenetic Inference Based on Genetic Attribute Reduction for Morphological Data
- Author
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Liu Zeyun, Hongwei Feng, Jian Han, Jianni Liu, Jun Feng, and Richard F. E. Sutcliffe
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0106 biological sciences ,Computer science ,Grafting (decision trees) ,Decision tree ,General Physics and Astronomy ,lcsh:Astrophysics ,Bayesian inference ,010603 evolutionary biology ,01 natural sciences ,Article ,010104 statistics & probability ,lcsh:QB460-466 ,morphological analysis ,phylogenetic tree ,0101 mathematics ,lcsh:Science ,Blossom algorithm ,Seed tree ,Phylogenetic tree ,business.industry ,information entropy ,Pattern recognition ,Missing data ,lcsh:QC1-999 ,Maximum parsimony ,ComputingMethodologies_PATTERNRECOGNITION ,attribute reduction ,lcsh:Q ,Artificial intelligence ,business ,lcsh:Physics - Abstract
To address the instability of phylogenetic trees in morphological datasets caused by missing values, we present a phylogenetic inference method based on a concept decision tree (CDT) in conjunction with attribute reduction. First, a reliable initial phylogenetic seed tree is created using a few species with relatively complete morphological information by using biologists&rsquo, prior knowledge or by applying existing tools such as MrBayes. Second, using a top-down data processing approach, we construct concept-sample templates by performing attribute reduction at each node in the initial phylogenetic seed tree. In this way, each node is turned into a decision point with multiple concept-sample templates, providing decision-making functions for grafting. Third, we apply a novel matching algorithm to evaluate the degree of similarity between the species&rsquo, attributes and their concept-sample templates and to determine the location of the species in the initial phylogenetic seed tree. In this manner, the phylogenetic tree is established step by step. We apply our algorithm to several datasets and compare it with the maximum parsimony, maximum likelihood, and Bayesian inference methods using the two evaluation criteria of accuracy and stability. The experimental results indicate that as the proportion of missing data increases, the accuracy of the CDT method remains at 86.5%, outperforming all other methods and producing a reliable phylogenetic tree.
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- 2019
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21. Exponential fertilization on red-seed tree (Ormosia hosiei) seedlings subjected to contrasting light conditions: Do we really need intensive nutrient loading?
- Author
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Xianyou Luo, Zhichun Zhou, and Xiuli Chu
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0106 biological sciences ,antioxidant ,Agriculture (General) ,Biomass ,nursery culture ,Plant Science ,Horticulture ,Ormosia hosiei ,engineering.material ,Photosynthesis ,01 natural sciences ,nutrient loading ,S1-972 ,Human fertilization ,Nutrient ,vulnerable species ,Seed tree ,biology ,Chemistry ,food and beverages ,Forestry ,04 agricultural and veterinary sciences ,SD1-669.5 ,biology.organism_classification ,Seedling ,040103 agronomy & agriculture ,engineering ,0401 agriculture, forestry, and fisheries ,Fertilizer ,red-seed tree ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Exponential fertilization (EF) can feed seedlings with more nutrients than needed for growth and continuous lighting is expected to reduce the risk of loading at high application rate. In this study, red-seed tree (Ormosia hosiei Hemsley & E. H. Wilson) seedlings were raised by EF at a low rate of 160 mg nitrogen (N) plant-1 (conventional) (N-phosphorus [P]-potassium [K], 12-9-12) and a high rate of 600 mg N plant-1 (intensive), which was adapted from previous studies with large-pot-seedlings. Both fertilizer regimes were nested to either of two light spectra from high-pressure sodium (HPS) and light-emitting diode (LED) sources with three replicates for each combined treatment. Seedlings subjected to the conventional regime in the LED spectrum showed better growth and greater biomass accumulation with higher leaf N and P contents than other ones. In the conventional fertilizer regime, the LED spectrum also resulted in higher photosynthesis shown by more pigments and higher N synthesis than the HPS spectrum. The HPS spectrum strengthened P synthesis in the intensive regime. The antioxidative activity was stimulated by a high dose of EF, hence excessive toxicity was likely induced. We recommend using the normal rate of 160 mg N plant-1 for the culture of red-seed tree seedlings with LED lighting to promote seedling quality without causing excessive nutrient toxicity.
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- 2021
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22. Asymptotic Properties of the Number of Matching Coalescent Histories for Caterpillar-Like Families of Species Trees
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Noah A. Rosenberg and Filippo Disanto
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0301 basic medicine ,Catalan Numbers ,Enumeration ,Genetic Speciation ,Article ,Coalescent theory ,Combinatorics ,Catalan number ,03 medical and health sciences ,Genetics ,Caterpillar-Like Trees ,Quantitative Biology::Populations and Evolution ,Computer Simulation ,Algebraic expression ,Quantitative Biology - Populations and Evolution ,Phylogeny ,Mathematics ,Sequence ,Seed tree ,Models, Genetic ,Applied Mathematics ,Genetic Drift ,Populations and Evolution (q-bio.PE) ,Generating function ,Biological Evolution ,Generating Functions ,Phylogenetics ,030104 developmental biology ,FOS: Biological sciences ,Coalescent ,Tree (set theory) ,Constant (mathematics) ,Algorithms ,Biotechnology - Abstract
Coalescent histories provide lists of species tree branches on which gene tree coalescences can take place, and their enumerative properties assist in understanding the computational complexity of calculations central in the study of gene trees and species trees. Here, we solve an enumerative problem left open by Rosenberg ( IEEE/ACM Transactions on Computational Biology and Bioinformatics 10: 1253-1262, 2013) concerning the number of coalescent histories for gene trees and species trees with a matching labeled topology that belongs to a generic caterpillar-like family. By bringing a generating function approach to the study of coalescent histories, we prove that for any caterpillar-like family with seed tree $t$ , the sequence $(h_n)_{n\ge 0}$ describing the number of matching coalescent histories of the $n$ th tree of the family grows asymptotically as a constant multiple of the Catalan numbers. Thus, $h_n \sim \beta _t c_n$ , where the asymptotic constant $\beta _t > 0$ depends on the shape of the seed tree $t$ . The result extends a claim demonstrated only for seed trees with at most eight taxa to arbitrary seed trees, expanding the set of cases for which detailed enumerative properties of coalescent histories can be determined. We introduce a procedure that computes from $t$ the constant $\beta _t$ as well as the algebraic expression for the generating function of the sequence $(h_n)_{n\ge 0}$ .
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- 2016
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23. Diversidad de aves en un bosque bajo manejo forestal en la Sierra Norte de Puebla, México
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José Luis López-Becerra and Juan Antonio Barrón-Sevilla
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Seed tree ,Geography ,Abundance (ecology) ,Deforestation ,Logging ,Sustainable forest management ,Forestry ,General Medicine ,Species richness ,Endemism ,Transect - Abstract
La demanda de recursos forestales ha provocado la intensificación en el aprovechamiento de los bosques, y la necesidad de evaluar su efecto sobre las aves. El propósito del presente estudio fue evaluar la diversidad de aves en un bosque templado de producción forestal. Establecimos transectos y puntos de conteo intensivo en áreas representativas de los tratamientos silvícolas en el ejido Acolihuia, municipio de Chignahuapan, Puebla. Los tratamientos silvícolas que consideramos fueron cortas de aclareo, de liberación, de regeneración y de selección. Identificamos 35 especies de aves: 30 fueron residentes y 5 migratorias neotropicales. Cinco especies tienen alguna categoría de endemismo, y registramos a Myadestes occidentalis, sujeta a protección especial por la NOM-059- SEMARNAT-2010. La abundancia y riqueza de especies entre tratamientos silvícolas fue diferente. La mayor riqueza y diversidad alfa la registramos en áreas manejadas por el método de desarrollo silvícola. La similitud de especies entre tratamientos es baja o intermedia, lo que sugiere que las especies pueden conservarse durante la rotación de los tratamientos. En un escenario de deforestación persistente y requerimiento creciente de productos forestales, el fomento al manejo forestal sustentable puede contribuir a la conservación de la diversidad de aves.
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- 2018
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24. Conifer Regeneration After Experimental Shelterwood and Seed-Tree Treatments in Boreal Forests: Finding Silvicultural Alternatives
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Jean-Martin Lussier, Miguel Montoro Girona, Nelson Thiffault, and Hubert Morin
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0106 biological sciences ,Balsam ,010504 meteorology & atmospheric sciences ,Sustainable forest management ,Plant Science ,lcsh:Plant culture ,seedling ,010603 evolutionary biology ,01 natural sciences ,black spruce ,ecosystem-based management ,partial cutting ,lcsh:SB1-1110 ,Regeneration (ecology) ,Scarification ,0105 earth and related environmental sciences ,Original Research ,Seed tree ,balsam fir ,biology ,even-aged stands ,Forest Science ,Taiga ,Forestry ,biology.organism_classification ,Black spruce ,sustainable forest management ,shade-tolerant species ,Environmental science ,Abies balsamea - Abstract
Forest regeneration is a key element in achieving sustainable forest management. Partial harvest methods have been used extensively in temperate broadleaf and mixedwood ecosystems to promote regeneration on poorly stocked sites and to maintain forest composition and productivity. However, their effectiveness in promoting conifer establishment has yet to be demonstrated in unmanaged boreal forests, especially those dominated by black spruce (Picea mariana (Mill.) BSP) where constraints for regeneration differ from those found in more meridional regions. We aimed to evaluate conifer seedling density and dimensions, 10 years after the onset of a gradient of silvicultural treatments varying in harvesting intensities, and to identify the critical factors driving the regeneration process. Study blocks of even-aged black spruce stands in the eastern Canadian boreal forest were submitted to three variants of shelterwood harvesting: a seed-tree harvest, a clear-cut and an untreated control. Shelterwood and seed-tree harvesting were combined with spot scarification to promote regeneration. Shelterwood and seed-tree harvesting produced a density of conifer regeneration sufficient to maintain forest productivity, but they did not promote seedling growth. Black spruce was the predominant species in terms of regeneration density, with proportions 3–5× higher than that for balsam fir (Abies balsamea (L.) Mill.). Ten years after treatment, seed-origin black spruce seedlings were abundant in skidding trails, while layers dominated the residual strips. Balsam fir density was not influenced by treatment nor by tree position relative to skidding trails. Balsam fir and black spruce had different responses to treatment in terms of height and diameter, the former exhibiting a better growth performance and larger diameter in the residual strips. Spot scarification created micro-sites that had a significant impact on the regeneration process. Overall, our results support that shelterwood and seed-tree harvesting combined with scarification enable adequate regeneration in black spruce stands, confirming these treatments as viable silvicultural alternatives to clear-cutting when required by sustainable forest management objectives.
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- 2018
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25. Comparison of Genetic Variation between Pre-practice Mature Trees and Post-practice One-year Old Seedlings in Pinus densiflora Natural Regeneration Stands
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Hyun Seop Kim, Ji Young Ahn, Seung Hoon Baek, Seok Woo Lee, Jei-Wan Lee, and Hyo In Lim
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Clearcutting ,Horticulture ,Genetic diversity ,Seed tree ,Pinus densiflora ,Genetic variation ,Botany ,Microsatellite ,Natural regeneration ,Biology ,biology.organism_classification ,Genetic differentiation - Abstract
We studied the genetic impact of natural regeneration practices, such as Single seed tree, Group seed tree, Patch clear cutting and Alternate strip clear cutting systems, by comparing the nuclear microsatellite(nSSR) variation of post-practice natural regeneration one-year old seedlings of Pinus densiflora to that of pre-practice mature trees. The levels of genetic diversity of seedlings (A=13.6, =4.3, =0.571, =0.597) were similar to those of mature trees (A=13.4, =4.3, =0.596, =0.598) and the differences in the level of genetic diversity between seedlings and mature trees for each of the practices were not statistically significant. The degree of genetic differentiation between seedlings and mature trees was very low (=0.002) and the pairwise values between seedlings and mature trees for all practices were less than 0.01. Overall, the natural regeneration practices appeared to have only minor impacts on the genetic diversity and the genetic composition in the studied P. densiflora stands. For a better understanding of the genetic effects of natural regeneration practices, subsequent studies such as temporal genetic variation of seedlings formed by crossing among post-practice mature trees should be considered.
- Published
- 2015
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26. The effect of scalping on seedling establishment after seed tree cutting of Scots pine stands in drained peatlands in northern Finland
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Markku Saarinen, Hannu Hökkä, and Jyrki Hytönen
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040101 forestry ,0106 biological sciences ,Scalping ,Peat ,Seed tree ,Scots pine ,Growing season ,Forestry ,04 agricultural and veterinary sciences ,Natural regeneration ,Northern finland ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Agronomy ,Seedling ,Botany ,0401 agriculture, forestry, and fisheries - Abstract
We studied the establishment of natural seedlings after seed tree cutting and scalping in two drained Scots pine peatland stands in northern Finland (Simo and Sievi). Approximately, 50 ha−1 of Scots pine stems were retained on both sites. During the six subsequent years, five seedling surveys were conducted. The effect of site preparation was analysed using generalized linear mixed models (GLMM). The mean density of pine seedlings increased more quickly in the scalped plots and was ca. 1.1 m−2 after six years compared to 0.87 m−2 in the non-scalped plots, on average. Scalping increased the number of pine seedlings 2-fold compared to that in non-treated plots in Simo, however, in Sievi non-treated plots had 30% higher pine seedling density after six years. Downy birch seedling density was 9–10-fold compared to that of non-treated plots in both sites. In terms of seedling density, seed tree cutting led to satisfactory pine regeneration after just two growing seasons in drained pine peatlands, even w...
- Published
- 2015
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27. Research Article Genetic diversity between and within half-sib families of Brazil nut tree (Bertholletia excelsa Bonpl.) originating from native forest of the Brazilian Amazon
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Helio Tonini, Paulo Eduardo Teodoro, L.D. Giustina, F.S. Gregolin, Larissa Pereira Ribeiro, Aisy Botega Baldoni, Flávio Dessaune Tardin, and Leonarda Grillo Neves
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0106 biological sciences ,Genetic diversity ,Seed tree ,Amazon rainforest ,food and beverages ,04 agricultural and veterinary sciences ,General Medicine ,Biology ,01 natural sciences ,Analysis of molecular variance ,food.food ,Horticulture ,food ,Germination ,040103 agronomy & agriculture ,Genetics ,0401 agriculture, forestry, and fisheries ,Bertholletia ,Microsatellite ,Molecular Biology ,010606 plant biology & botany ,Brazil nut - Abstract
Brazil nut tree is a species of economic importance for the Amazon region, known for the commercialization of its almonds. The objective of this work was to study the genetic diversity among half-sib progenies from different Brazil nut trees present in native forest in the municipality of Itauba, MT, belonging to the Brazilian Amazon. In a native forest area of nine hectares, fruits of nine parent trees, randomly selected in the plot, were collected. The seeds were planted at greenhouse and they were named, according to their origin, identifying seed tree and fruit. After the seed germination and initial development of the seedlings, leaves were collected for DNA extraction and analyzed with microsatellite molecular markers. It was performed analysis of molecular variance and cluster analysis of progenies and seed trees. There is greater genetic diversity between families than among progenies from the same family. The clustering of progenies from different families in the same group can be explained by the low dissimilarity between the seed trees. Among the loci analyzed in this study, eight were informative for evaluations of genetic diversity in Brazil nut, except BET12 and BET16 loci
- Published
- 2017
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28. A potential of new peach (Prunus persica L.) seed tree genotypes for the production of generative rootstocks
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Edward Żurawicz, Marek Szymajda, Mirosław Sitarek, and Kris Pruski
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0106 biological sciences ,0301 basic medicine ,Seed tree ,biology ,Ripening ,Horticulture ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,Prunus ,030104 developmental biology ,Seedling ,Germination ,Orchard ,Rootstock ,010606 plant biology & botany ,Woody plant - Abstract
The productivity value of six new Prunus persica genotypes - BN-1, BN-3, BN-4, BN-7, BN-8 and BN-45 for the seedling rootstock production for cultivated peach varieties was investigated. The control seedling varieties were P. persica ‘Mandzurska’ and P. persica ‘Siberian C’. All investigated trees were grown in the Experimental Orchard in Dąbrowice (Central Poland) of the Research Institute of Horticulture. Intensity of flowering and fruiting was evaluated as well as date of fruit ripening, size of fruits and their seeds (stones) including ability to germinate in relation to the age of the seeds (freshly harvested vs stored). The best (highest) yield was collected from trees of genotypes BN-1, BN-4 and BN-8. All of the new tree genotypes were producing smaller fruits and seeds with higher germination capacity compared to control trees. In terms of the characteristics assessed, the best as a seed source tree was genotypes BN-7 and BN-8. The trees of genotypes BN-1, BN-3 and BN-4 were very much comparable to control seedling varieties in terms of fruiting intensity of trees, number of stones obtained from the fruit yield and number of stones contained in 1 kg of their weight. This indicates tremendous usefulness of the evaluated new genotypes for sourcing seeds necessary for the production of rootstocks for peach varieties. They can be used in cultivation of peach not only in Poland but also in countries located in a cooler areas of the moderate climate.
- Published
- 2019
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29. Long-Term Seedling Height Growth and Compositional Changes Following Logging and Wildfire in a Central Pennsylvania Oak Forest
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Kim C. Steiner and Marc D. Abrams
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Quercus montana ,Seed tree ,biology ,Seedling ,Logging ,Botany ,Quercus velutina ,Forestry ,Plant Science ,Understory ,Fire ecology ,biology.organism_classification ,Basal area - Abstract
Overstory and understory data were collected over a 15-year period (1996–2011) before and after seed tree logging in 1996 and an accidental wildfire in 2006 in a young developing mixed-oak forest in central Pennsylvania. The mature forest overstory was dominated by chestnut oak (Quercus montana) followed by northern red oak (Quercus rubra), black oak (Quercus velutina), scarlet oak (Quercus coccinea), and red maple (Acer rubrum). Logging reduced the stand basal area by 76% and the tree density by 80%. Tree regeneration was dominated by red maple and mixed-oak species with 32,956 stems per ha prior to logging, which increased to 47,170 stems per ha eight years later. Wildfire reduced tree regeneration to an average of 22,511 stems per ha over three sample periods, with the largest reduction in red maple (−60%), followed by red oak species (−36%) and chestnut oak (−17%). The mean maximum height of plot-dominant regeneration for red maple and the four oak species increased significantly during the e...
- Published
- 2013
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30. Regeneration in canopy gaps of tierra-firme forest in the Peruvian Amazon: Comparing reduced impact logging and natural, unmanaged forests
- Author
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Henrik Meilby, Rune Juelsborg Karsten, Milos Jovanovic, Emilio Perales, and Carlos Reynel
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Canopy ,geography ,geography.geographical_feature_category ,Seed tree ,Amazon rainforest ,Agroforestry ,Logging ,Sustainable forest management ,Tropics ,Forestry ,Management, Monitoring, Policy and Law ,Old-growth forest ,Secondary forest ,Nature and Landscape Conservation - Abstract
Reduced impact logging (RIL) has been promoted as a cornerstone in sustainable forest management in the tropics, although the ecological implications of RIL guidelines are poorly understood. This study aims to identify the impact of RIL on the regeneration of commercial timber species by comparing the regeneration dynamics of logging gaps with naturally occuring canopy gaps. In the concession of Consorcio Forestal Amazonico in the region of Ucayali in the Peruvian Amazon, a total of 210 circular sample plots were established in 35 gaps in unmanaged natural forest and 35 canopy gaps in forest managed according to RIL guidelines. The size of each canopy gap was estimated by establishing a polygon that followed the vertical projection of the edge of the gap. Three circular plots of 100 m2 were established within each canopy gap. The center points of the plots were placed at the stump, mid-trunk and crown of the fallen tree. It appeared that the total abundance of seedlings did not differ significantly between logging gaps and natural canopy gaps. Instead the response to logging varied between species groups. The Clarisia sp. species group had a significant negative response to logging, while Ormosia sp., Aniba sp., Ocotea sp., Qualea sp. and Terminalia sp. were significantly more abundant in gaps of logged-over forest. A direct effect of seed tree retention on seedling abundance could not be detected statistically. Possible reasons for observed differences between untouched and logged forest and consequences of observed patterns for long-term forest development and management were discussed. It was concluded that issuing and enforcing strict guidelines on sustainable forest management is no guarantee for preserving species composition in tropical forests.
- Published
- 2013
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31. ThekopsoraandChrysomyxacone rusts damage Norway spruce cones after a good cone crop in Finland
- Author
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Juha Kaitera
- Subjects
Seed tree ,Forestry ,Picea abies ,Biology ,biology.organism_classification ,Chrysomyxa ,Rust ,Crop ,medicine.drug_formulation_ingredient ,Horticulture ,Chrysomyxa ledi ,Chrysomyxa pirolata ,Botany ,medicine ,Seed orchard - Abstract
In 2006, an excellent crop of Norway spruce [Picea abies (L.) Karst] cones in Finland was severely damaged by rust fungi. The distribution and frequency of infection and the fruiting and sporulation of these rusts were investigated in 9 seed orchards and 23 seed tree stands in Finland. Thekopsora areolata (Fr.) Magnus was the most common and important cone rust that significantly reduced the seed crop of orchards in southern Finland, where infections were 10–89%. In northern Finland, the frequency of infected cones was much lower in seed tree stands (0–10%) than in seed orchards. Chrysomyxa pirolata Wint. occurred less frequently in most stands, but was more common in seed orchards. Chrysomyxa ledi (Alb. & Schw.) de Bary was the most frequent cone rust in seed tree stands of northern Finland. Thekopsora areolata colonized most or all of a cone and formed aecia on both adaxial and abaxial scales, while cone infections of C. pirolata were incomplete and sporulation took place only on the abaxial sc...
- Published
- 2013
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32. Impact of monoecy in the genetic structure of a predominately dioecious conifer species, Araucaria angustifolia (Bert.) O. Kuntze
- Author
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Flávio Zanette, Moeses Andrigo Danner, Alexandre Magno Sebbenn, Juliana Zanetti Ribeiro, and Juliana Vitória Messias Bittencourt
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Genetic diversity ,Seed tree ,biology ,Botany ,Selfing ,Tree breeding ,Outcrossing ,Plant Science ,biology.organism_classification ,Araucaria ,Inbreeding ,Ecology, Evolution, Behavior and Systematics ,Xenogamy - Abstract
Understanding the mating system of a tree species is important in genetic conservation and tree breeding strategies because it affects the inbreeding and genetic diversity of the descendant populations. Araucaria angustifolia (Bert.) O. Kuntze is a mainly dioecious species that reproduces through outcrossing. However, some monoecious trees have been identified and they may reproduce through self-fertilization. The objective of this study was to confirm the expected relatedness of full-sibs in outcrossed hand-pollinated progenies of female seed trees, self-sibs of hand self-pollinated monoecious seed trees, and to investigate the mating system of open-pollinated progenies of female and monoecious A. angustifolia trees. To do this, eight microsatellite loci were used to genotype hand- and open-pollinated progenies. Our results show that the relatedness of outcrossed hand-pollinated progenies are true full-sibs and progenies from a selfed monoecious seed tree are self-sibs, which confirms the hand-pollination method used. Open-pollinated female seed trees reproduced only by outcrossing, generating progenies with a mixture of full- and half-sibs. Monoecious seed trees reproduced mainly by xenogamy, generating progenies with mixtures of self-sibs, full-sibs, half-sibs and self-half-sibs. We also found that an increase in the effective number of pollen donors ( $$ N_{\text{ep}} $$ ) would lead to an increase in the total number of alleles ( $$ K $$ ) within progenies. Our results also suggest that monecious trees have limited potential to modify the genetic structure through selfed seed production due to the very low estimated selfing rate in these trees and the rare occurrence of these trees in natural populations.
- Published
- 2013
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33. Gene Dispersion and Selfing Frequency in a Seed-Tree Stand of Pinus Sylvestris (L.)
- Author
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Yazdani, R., Lindgren, D., Rudin, D., Levin, S., editor, and Gregorius, Hans-Rolf, editor
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- 1985
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34. Predicting conifer establishment post wildfire in mixed conifer forests of the North American Mediterranean‐climate zone
- Author
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Hugh D. Safford, Kevin R. Welch, and Truman P. Young
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0106 biological sciences ,fire suppression effects ,010504 meteorology & atmospheric sciences ,ved/biology.organism_classification_rank.species ,fire‐stimulated shrubs ,010603 evolutionary biology ,01 natural sciences ,Shrub ,Calocedrus decurrens ,Forest restoration ,lcsh:QH540-549.5 ,Fire protection ,forest restoration ,forest resilience ,Fire ecology ,Restoration ecology ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,natural regeneration ,Seed tree ,Ecology ,biology ,ved/biology ,biology.organism_classification ,fire severity ,Environmental science ,lcsh:Ecology ,Woody plant - Abstract
Due to fire suppression policies, timber harvest, and other management practices over the last century, many low‐ to mid‐elevation forests in semiarid parts of the western United States have accumulated high fuel loads and dense, multi‐layered canopies that are dominated by shade‐tolerant and fire‐sensitive conifers. To a great extent, the future status of western US forests will depend on tree species’ responses to patterns and trends in fire activity and fire behavior and postfire management decisions. This is especially the case in the North American Mediterranean‐climate zone (NAMCZ), which supports the highest precipitation variability in North America and a 4‐ to 6‐month annual drought, and has seen greater‐than‐average increases in air temperature and fire activity over the last three decades. We established 1490 survey plots in 14 burned areas on 10 National Forests across a range of elevations, forest types, and fire severities in the central and northern NAMCZ to provide insight into factors that promote natural tree regeneration after wildfires and the differences in postfire responses of the most common conifer species. We measured site characteristics, seedling densities, woody shrub, and tree growth. We specified a zero‐inflated negative binomial mixed model with random effects to understand the importance of each measured variable in predicting conifer regeneration. Across all fires, 43% of all plots had no conifer regeneration. Ten of the 14 fires had median conifer seedling densities that did not meet Forest Service stocking density thresholds for mixed conifer forests. When regeneration did occur, it was dominated by shade‐tolerant but fire‐sensitive firs (Abies spp.), Douglas‐fir (Pseudotsuga menziesii) and incense cedar (Calocedrus decurrens). Seedling densities of conifer species were lowest in sites that burned at high severity, principally due to the biotic consequences of high severity fire, for example, increased distances to live seed trees and competition with fire‐following shrubs. We developed a second model specifically for forest managers and restoration practitioners who work in yellow pine and mixed conifer forests in the central NAMCZ to assess potential natural regeneration in the years immediately following a fire, allowing them to prioritize which areas may need active postfire forest restoration and supplemental planting.
- Published
- 2016
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35. Enumeration of ancestral configurations for matching gene trees and species trees
- Author
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Noah A. Rosenberg and Filippo Disanto
- Subjects
0106 biological sciences ,0301 basic medicine ,K-ary tree ,Genetic Speciation ,Biology ,010603 evolutionary biology ,01 natural sciences ,Coalescent theory ,Evolution, Molecular ,Combinatorics ,03 medical and health sciences ,Sequence Homology, Nucleic Acid ,Genetics ,Animals ,Quantitative Biology::Populations and Evolution ,Quantitative Biology - Populations and Evolution ,Molecular Biology ,Phylogeny ,Research Articles ,Seed tree ,Models, Genetic ,Phylogenetic tree ,Populations and Evolution (q-bio.PE) ,Conditional probability ,Quantitative Biology::Genomics ,Computational Mathematics ,Tree (data structure) ,030104 developmental biology ,Taxon ,Genes ,Computational Theory and Mathematics ,FOS: Biological sciences ,Modeling and Simulation ,Tree rearrangement ,Algorithms - Abstract
Given a gene tree and a species tree, ancestral configurations represent the combinatorially distinct sets of gene lineages that can reach a given node of the species tree. They have been introduced as a data structure for use in the recursive computation of the conditional probability under the multispecies coalescent model of a gene tree topology given a species tree, the cost of this computation being affected by the number of ancestral configurations of the gene tree in the species tree. For matching gene trees and species trees, we obtain enumerative results on ancestral configurations. We study ancestral configurations in balanced and unbalanced families of trees determined by a given seed tree, showing that for seed trees with more than one taxon, the number of ancestral configurations increases for both families exponentially in the number of taxa n. For fixed n, the maximal number of ancestral configurations tabulated at the species tree root node and the largest number of labeled histories possible for a labeled topology occur for trees with precisely the same unlabeled shape. For ancestral configurations at the root, the maximum increases with \documentclass{aastex}\usepackage{amsbsy}\usepackage{amsfonts}\usepackage{amssymb}\usepackage{bm}\usepackage{mathrsfs}\usepackage{pifont}\usepackage{stmaryrd}\usepackage{textcomp}\usepackage{portland, xspace}\usepackage{amsmath, amsxtra}\usepackage{upgreek}\pagestyle{empty}\DeclareMathSizes{10}{9}{7}{6}\begin{document} $$ k_0^n$$ \end{document}, where \documentclass{aastex}\usepackage{amsbsy}\usepackage{amsfonts}\usepackage{amssymb}\usepackage{bm}\usepackage{mathrsfs}\usepackage{pifont}\usepackage{stmaryrd}\usepackage{textcomp}\usepackage{portland, xspace}\usepackage{amsmath, amsxtra}\usepackage{upgreek}\pagestyle{empty}\DeclareMathSizes{10}{9}{7}{6}\begin{document} $${{k_0}} \approx \bf1.5028$$ \end{document} is a quadratic recurrence constant. Under a uniform distribution over the set of labeled trees of given size, the mean number of root ancestral configurations grows with \documentclass{aastex}\usepackage{amsbsy}\usepackage{amsfonts}\usepackage{amssymb}\usepackage{bm}\usepackage{mathrsfs}\usepackage{pifont}\usepackage{stmaryrd}\usepackage{textcomp}\usepackage{portland, xspace}\usepackage{amsmath, amsxtra}\usepackage{upgreek}\pagestyle{empty}\DeclareMathSizes{10}{9}{7}{6}\begin{document} $$\sqrt {\bf 3 / 2} { {\bf ( 4 / 3 ) ^n}}$$ \end{document} and the variance with ∼\documentclass{aastex}\usepackage{amsbsy}\usepackage{amsfonts}\usepackage{amssymb}\usepackage{bm}\usepackage{mathrsfs}\usepackage{pifont}\usepackage{stmaryrd}\usepackage{textcomp}\usepackage{portland, xspace}\usepackage{amsmath, amsxtra}\usepackage{upgreek}\pagestyle{empty}\DeclareMathSizes{10}{9}{7}{6}\begin{document} $${{\bf 1.4048 ( 1.8215 )} ^n}$$ \end{document}. The results provide a contribution to the combinatorial study of gene trees and species trees.
- Published
- 2016
36. Radial Growth Response of Black Spruce Stands Ten Years after Experimental Shelterwoods and Seed-Tree Cuttings in Boreal Forest
- Author
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Hubert Morin, Miguel Montoro Girona, Denis Walsh, and Jean-Martin Lussier
- Subjects
0106 biological sciences ,dendroecology ,010504 meteorology & atmospheric sciences ,edge effect ,01 natural sciences ,Edge effects ,Cutting ,partial cutting ,ecosystem management ,even-aged stands ,growth yield ,sustainable forest management ,0105 earth and related environmental sciences ,Seed tree ,Wood production ,Ecology ,Taiga ,Forestry ,lcsh:QK900-989 ,Black spruce ,Radial growth ,Boreal ,lcsh:Plant ecology ,Environmental science ,010606 plant biology & botany - Abstract
Partial cutting is thought to be an alternative to achieve sustainable management in boreal forests. However, the effects of intermediate harvest intensity (45%–80%) on growth remain unknown in black spruce (Picea mariana (Mill.) B.S.P.) stands, one of the most widely distributed boreal species with great commercial interest. In this study, we analysed the effect of three experimental shelterwood and one seed-tree treatments on tree radial growth in even-aged black spruce stands, 10 years after intervention. Our results show that radial growth response 8–10 years after cutting was 41% to 62% higher than in untreated plots, with stand structure, treatment, tree position relative to skidding trails, growth before cutting and time having significant interactions. The stand structure conditioned tree growth after cutting, being doubled in younger and denser stands. Tree spatial position had a pronounced effect on radial growth; trees at the edge of the skidding trails showed twice the increase in growth compared to interior trees. Dominant trees before cutting located close to the skidding trails manifested the highest growth response after cutting. This research suggests that the studied treatments are effective to enhance radial wood production of black spruce especially in younger stands, and that the edge effect must be considered in silvicultural management planning.
- Published
- 2016
37. Extensive seed and pollen dispersal and assortative mating in the rain forest tree Entandrophragma cylindricum (Meliaceae) inferred from indirect and direct analyses
- Author
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Franck K. Monthe, Olivier J. Hardy, Jean-Louis Doucet, Judy Loo, and Jérôme Duminil
- Subjects
0106 biological sciences ,0301 basic medicine ,Gene Flow ,Rainforest ,Pollination ,Genotype ,Seed dispersal ,medicine.disease_cause ,010603 evolutionary biology ,01 natural sciences ,Trees ,03 medical and health sciences ,Entandrophragma ,Pollen ,Botany ,Seed Dispersal ,Genetics ,medicine ,Cameroon ,Meliaceae ,Ecology, Evolution, Behavior and Systematics ,Seed tree ,biology ,Models, Genetic ,Ecology ,Assortative mating ,food and beverages ,Genetic Variation ,biology.organism_classification ,030104 developmental biology ,Genetics, Population ,Genetic structure ,Biological dispersal ,Microsatellite Repeats - Abstract
Pollen and seed dispersal are key processes affecting the demographic and evolutionary dynamics of plant species and are also important considerations for the sustainable management of timber trees. Through direct and indirect genetic analyses, we studied the mating system and the extent of pollen and seed dispersal in an economically important timber species, Entandrophragma cylindricum (Meliaceae). We genotyped adult trees, seeds and saplings from a 400-ha study plot in a natural forest from East Cameroon using eight nuclear microsatellite markers. The species is mainly outcrossed (t = 0.92), but seeds from the same fruit are often pollinated by the same father (correlated paternity, rp = 0.77). An average of 4.76 effective pollen donors (Nep ) per seed tree contributes to the pollination. Seed dispersal was as extensive as pollen dispersal, with a mean dispersal distance in the study plot approaching 600 m, and immigration rates from outside the plot to the central part of the plot reaching 40% for both pollen and seeds. Extensive pollen- and seed-mediated gene flow is further supported by the weak, fine-scale spatial genetic structure (Sp statistic = 0.0058), corresponding to historical gene dispersal distances (σg ) reaching approximately 1,500 m. Using an original approach, we showed that the relatedness between mating individuals (Fij = 0.06) was higher than expected by chance, given the extent of pollen dispersal distances (expected Fij = 0.02 according to simulations). This remarkable pattern of assortative mating could be a phenomenon of potentially consequential evolutionary and management significance that deserves to be studied in other plant populations.
- Published
- 2016
38. Pollen flow and paternity in an isolated and non-isolated black walnut (Juglans nigra L.) timber seed orchard
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James R. McKenna, Graham S. Frank, Shaneka S. Lawson, Keith E. Woeste, Aziz Ebrahimi, and Mark V. Coggeshall
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0106 biological sciences ,Indiana ,Heredity ,Pollination ,Plant Science ,Wind ,01 natural sciences ,Trees ,Inbreeding ,Data Management ,Multidisciplinary ,Seed tree ,Plant Anatomy ,Eukaryota ,Agriculture ,Phylogenetic Analysis ,Plants ,Phylogenetics ,Horticulture ,Plant Physiology ,Seeds ,Medicine ,Pollen ,Orchards ,Orchard ,Seed orchard ,Research Article ,Juglans ,Computer and Information Sciences ,Farms ,DNA, Plant ,Science ,Biology ,Research and Analysis Methods ,010603 evolutionary biology ,Genetics ,Evolutionary Systematics ,Selection, Genetic ,Molecular Biology Techniques ,Molecular Biology ,Taxonomy ,Evolutionary Biology ,Pollination management ,Organisms ,Biology and Life Sciences ,Genetic Variation ,Selfing ,biology.organism_classification ,Plant Breeding ,Cloning ,Microsatellite Repeats ,010606 plant biology & botany - Abstract
Artificial pollination of black walnut (Juglans nigra L.) is not practical and timber breeders have historically utilized only open-pollinated half-sib families. An alternate approach called "breeding without breeding," consists of genotyping open-pollinated progeny using DNA markers to identify paternal parents and then constructing full-sib families. In 2014, we used 12 SSR markers to genotype 884 open-pollinated half-sib progeny harvested from two clonal orchards containing 206 trees, comprised of 52 elite timber selections. Seed was harvested in 2011 from each of two ramets of 23 clones, one upwind and one downwind, based on prevailing wind direction from the west-southwest. One orchard was isolated from wild black walnut and composed of forward selections while the other orchard was adjacent to a natural forest containing mature black walnut composed of backward selections. Isolation significantly increased within-orchard pollination (85%) of the progeny from the isolated orchard compared to 42% from the non-isolated orchard. Neither prevailing wind direction nor seed tree position in the orchard affected paternity patterns or wild pollen contamination. Genetic diversity indices revealed that progeny from both orchards were in Hardy-Weinberg equilibrium with very little inbreeding and no selfing. A significant level of inbreeding was present among the forward selected parents, but not the first generation (backward selected) parents. Some orchard clones failed to sire any progeny while other clones pollinated upwards of 20% of progeny.
- Published
- 2018
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39. Seed tree density, variable retention, and stand composition influence recruitment of white spruce in boreal mixedwood forests
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John R. Spence, Rick PelletierR. Pelletier, Kevin A. Solarik, Victor J. Lieffers, and W. Jan A. Volney
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Stocking rate ,Canopy ,Global and Planetary Change ,Light transmission ,Seed tree ,Ecology ,Boreal ,Animal production ,Environmental science ,Forestry ,Composition (visual arts) ,Natural regeneration - Abstract
In an operational-scale experiment, we examined natural regeneration of white spruce ( Picea glauca (Moench) Voss) under various degrees of variable retention harvesting across different overstory canopy compositions. We sampled four types of overstory canopy compositions (ranging from deciduous dominated to conifer dominated) and six rates of retention (2%, 10%, 20%, 50%, 75% and 100%). Spruce seedling densities, maximum height, and stocking rates were assessed in 432 transects and were found to be lowest in the deciduous stands and with 100% canopy retention (control). Regression tree analysis indicated that densities, maximum height, and stocking of spruce seedlings were greatest with higher availability of seed trees (>30·ha–1) and on machine corridors; in these circumstances stocking reached 74%. By contrast, stocking was less than 14% on retention strips with no machine traffic, when seed tree density was less than 11 seed trees·ha–1. However, stocking also declined with higher density of residual trees. Stocking in relation to density of seed trees was highest within clearcuts and lowest within the 75% retention intensity where low light transmission may have limited regeneration success. Passive soil disturbance from skidding appeared to be more important for the establishment of spruce seedlings than was the abundance of competing vegetation.
- Published
- 2010
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40. Spatial optimization for dispersion of remnant trees in seed-tree cuttings and retention-tree stands of Scots pine
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Sven Wagner, Stephan Dempe, and Isabelle Herrmann
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Mathematical optimization ,Optimization problem ,Seed tree ,biology ,Scots pine ,Forestry ,biology.organism_classification ,Multi-objective optimization ,Tree (data structure) ,Botany ,Spatial ecology ,Common spatial pattern ,Silviculture ,Mathematics - Abstract
In this study, optimal spatial patterns for seed-tree cuttings and green-tree retention in Scots pine stands were investigated. The optimization approach is based on functions that describe the effects of single, retained trees on Scots pine regeneration. Two spatial optimization techniques were applied to this intrastand-level problem. The model approach assumes smooth, non-convex optimization problems with a convex set of feasible solutions. These problems were solved with a deterministic optimization algorithm with 500 initial tree position sets, also taking into account different forest management objectives such as high, homogeneous seed and seedling density. This required the use of multicriteria optimization procedures. The best spatial patterns identified differed significantly according to the objective functions considered. This was demonstrated by aggregation index values of stem maps and from visualization. Thus, the objective functions must be defined carefully to obtain best solutio...
- Published
- 2010
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41. Environmental influences on post-harvest natural regeneration of Pinus pinaster Ait. in Mediterranean forest stands submitted to the seed-tree selection method
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Libertad Juez, Felipe Bravo, and Encarna Rodríguez-García
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Mediterranean climate ,Seed tree ,biology ,Agroforestry ,Forestry ,Plant Science ,biology.organism_classification ,Plant ecology ,Seedling ,Litter ,Pinus pinaster ,Ordination ,Woody plant - Abstract
Research on natural regeneration is crucial for the development of sustainable forestry practices, in light of the global climate changes taking place. In this study, 151 plots were sampled in six Pinus pinaster stands that were naturally regenerated by the seed-tree method in Mediterranean forests in central Spain. The objectives of the survey were to study the suitability of different forest stands designated for natural regeneration as well as to analyse seedling establishment and the relationship between regeneration and different site factors. Analysis of variance and multivariate analysis with canonical ordination techniques were employed. Full and partial redundancy analyses on a correlation matrix were used to carry out a direct gradient analysis of regeneration density as a function of site factors. Nearly all stands presented seedling densities over 2,000 seedlings ha−1 and were thus found to be suitable for natural regeneration of Pinus pinaster by the seed-tree selection method. Significant variables that best explained total seedling and viable seedling density were spring and autumn precipitation of the year prior to establishment, spring and summer precipitation of the year of establishment and percentage cover of litter. There were no signs of competition between shrubs and seedlings, but a negative significant correlation with grass cover was observed. Pinus pinaster natural regeneration was successful with the seed-tree method, although it appeared to be highly dependent on climate and stand conditions.
- Published
- 2010
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42. Lessons from long-term studies of harvest methods in southwestern ponderosa pine–Gambel oak forests on the Fort Valley Experimental Forest, Arizona, U.S.A
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Andrew J. Sánchez Meador and Margaret M. Moore
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Seed tree ,Ecology ,Forest management ,Logging ,Forestry ,Experimental forest ,Management, Monitoring, Policy and Law ,Geography ,Grazing ,Forest ecology ,Spatial ecology ,Nature and Landscape Conservation ,Woody plant - Abstract
The Fort Valley Experiment Station (now Fort Valley Experimental Forest) has contributed many long-term studies to forest research. This paper focuses on a “Methods of Cutting” study initiated in 1913 on the Coulter Ranch Unit of Fort Valley and how that long-term study yielded important ecological and management lessons. We quantified the historical and contemporary forest patterns at this ponderosa pine–Gambel oak site, which was harvested using three different harvesting systems in 1913 (seed tree, group selection, and light selection) and was partially excluded from livestock browsing in 1919. Using nine historically stem-mapped permanent plots for the following three stand structural scenarios: 1913 pre-harvest (modeled), post-harvest (actual), and 2003–2006 (actual) conditions, we examined the short- and long-term consequences of harvest and livestock grazing land-use and stand dynamics. We assessed changes in spatial pattern under each harvesting system and in each structural scenario, and lastly, we examined spatial and temporal tree recruitment patterns as observed in the contemporary (2003–2006) conditions. The seed tree harvests effectively converted the spatial patterns from aggregated to random and left few trees, while the group selection and light selection had varying effects, but consistently exaggerated the spatial patchiness of the stand. By 2003–2006, all plots were aggregated at all scales and were one large patch of predominately small trees. Sites that were harvested, but excluded from livestock browsing had 40% more trees in 2003–2006. Contemporary recruitment patterns were significantly aggregated under all harvesting systems, but were most strongly aggregated if the site received a group selection or light selection cut. For group and light selection, pine seedlings initially established in stump patches created by harvesting and then proceeded to fill-in the remaining area, with recruitment rarely found under the residual pine or oak trees. Long-term data sets, such as these established by the Fort Valley Experimental Forest in 1913, are essential for quantifying the impact of historical land-use practices on contemporary forest composition and structure. Ignoring land-use legacies may lead to the misinterpretation of stand dynamics and development, and therefore should be explicitly quantified and incorporated into future management and restoration activities.
- Published
- 2010
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43. Spatial patterns of natural Pinus strobus L. regeneration in a Pinus resinosa Ait. stand1
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Eric K. Zenner and JeriLynn E. Peck
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Seed tree ,Ecology ,Niche ,Spatial ecology ,Spatial variability ,Plant Science ,Biology ,Pinus strobus ,Regeneration (ecology) ,Restoration ecology ,Ecology, Evolution, Behavior and Systematics ,Woody plant - Abstract
Understanding the regeneration niche of white pine (Pinus strobus L.) is necessary to promote the restoration of this formerly widespread species. We tested several hypotheses drawn from the literature relating to four features of the regeneration niche for P. strobus: distance to seed source, overstory influence, segregation into spatial neighborhoods, and deer browsing. All hypotheses were tested in a 0.36-ha stem-mapped Pinus resinosa Ait. stand with abundant naturally regenerating P. strobus. Few regenerating P. strobus were found in the immediate vicinity of the seed source tree or other overstory trees and the distribution of distances away from the seed tree differed for very young (< 5 yr) and older regeneration. The spatial arrangement of older regeneration was less associated with the overstory than that of young regeneration, although growth rates were lower in areas of higher overstory influence. Evidence was found for the segregation of regeneration on the basis of size and age class...
- Published
- 2009
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44. Habitat differences affect life history tactics of a pulsed resource consumer, the edible dormouse ( Glis glis )
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Claudia Bieber and Thomas Ruf
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Seed tree ,biology ,Reproductive success ,Ecology ,media_common.quotation_subject ,Woodland ,biology.organism_classification ,Hedge ,Deciduous ,Reproduction ,Beech ,Ecology, Evolution, Behavior and Systematics ,media_common ,Edible dormouse - Abstract
We studied flexibility of life history tactics, in terms of habitat-dependent survival and reproduction, in a pulsed resource consumer, the edible dormouse (Glis glis). We compared capture–mark–recapture data from three subpopulations of dormice: one in a homogeneous beech forest (Forest), and two in patches of woodland (Grove/Hedge), with more constant but less energy-rich food availability (e.g., fleshy fruits), over a period of 5 years. The general seasonal pattern of hibernation and reproduction was similar in all three subpopulations. Juveniles were born in only 3 out of 5 years at all study sites, which was paralleled by the occurrence of strong seed production in beech. Reproductive output (number of juveniles/female) was lower at the two sites with low seed tree abundance (Grove: 1.3; Hedge: 2.0) than in the Forest (4.4). Yearly survival probability of adults was significantly lower in the Forest (0.57, CI = 0.42–0.70) than in the areas Grove and Hedge (0.83, CI = 0.70–0.91). Despite their shortened lifespan, estimated lifetime reproductive success of females in the Forest was higher (6.2 young) than in the areas Grove/Hedge (4.8 young). Together, these data indicate that, in more constant habitats (Grove/Hedge), lower reproductive investment was associated with increased longevity. However, dormice apparently maximise lifetime reproductive success by a ‘sit tight’ strategy that synchronises reproduction with energy rich seed pulses in deciduous forests.
- Published
- 2009
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45. Establishment of natural regeneration under severe browsing pressure from white-tailed deer after group seed-tree cutting with scarification on Anticosti Island
- Author
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Steeve D. Côté, Marcel Prévost, Julien Beguin, and David Pothier
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Balsam ,Global and Planetary Change ,Herbivore ,Seed tree ,Ecology ,biology ,Forestry ,Ruminant animal ,Natural regeneration ,biology.organism_classification ,Regeneration (ecology) ,Scarification ,Abies balsamea - Abstract
The use of large clearcuts with protection of advance regeneration is inappropriate for regeneration of balsam fir ( Abies balsamea (L.) Mill.) under severe browsing from white-tailed deer ( Odocoileus virginianus (Zimmermann)). However, little is known about the effects of tree-retention methods along with scarification on the establishment of balsam fir in a context of severe herbivory. Consequently, we hypothesized that seed-tree-group cutting in conjunction with soil scarification creates favourable conditions for balsam fir regeneration. In 1998 and 1999 we set up three circular forest groups of different sizes (40, 60, and 80 m in diameter) surrounded by three different intensities of scarification (no treatment, single pass, double pass) in two balsam fir stands on Anticosti Island, Quebec, Canada. Moreover, we used a network of fenced and unfenced regeneration plots to evaluate the impact of white-tailed deer browsing. The results showed that up to 7 years after harvest, seed-tree-group cutting did not improve the establishment of conifer species. Scarification had a negative impact on the abundance of conifer species, whereas white birch ( Betula papyrifera Marshall) density was significantly higher in areas scarified twice than in unscarified areas. Overall, the development of palatable tree species appears unlikely at deer densities >20 individuals/km2.
- Published
- 2009
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46. Applying ecological knowledge to decisions about seed tree retention in selective logging in tropical forests
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Joberto Veloso de Freitas and Michelle A. Pinard
- Subjects
Seed tree ,Common species ,Abundance (ecology) ,Ecology ,Forest management ,Forest ecology ,Forestry ,Rainforest ,Management, Monitoring, Policy and Law ,Biology ,Felling ,Silviculture ,Nature and Landscape Conservation - Abstract
In production forests in the moist tropics, trees are selected for felling or retention primarily by species and size. Tree regeneration requirements and forest stand responses to harvesting are often ignored, and consequently, the regeneration of the residual forest is not ensured. We developed and tested an alternative approach to tree selection, where seed trees were retained as a proportion of harvestable trees, with the proportion defined as a function of species’ ecological attributes and local abundance (100 ha), in contrast to the conventional approach which retained 10% of harvestable trees, uniformly across commercial species at the compartmental scale (1000 ha). The study was conducted in Democracia Project, a forest management operation in Amazonas, Brazil. The conventional approach failed to retain any seed trees at the 100 ha block scale for 7 of 37 commercial species, whereas the alternative approach retained a minimum number of seed trees per 100 ha block for all commercial species. The conventional approach resulted in the retention of relatively high proportions of potential seed trees for common species (e.g., 22% for Eperua oleifera and 36% for Maquira sclerophila) that are shade bearers and recruit readily at the site; alternately, for species with constraints to regeneration, it retained relatively low proportions (e.g., 2% for Dinizia excelsa and Hymenolobium nitidum). The alternative approach effectively retained lower proportions of common species (e.g., 10% for E. oleifera and 13% for M. sclerophila) and relatively high proportions of species with regeneration constraints (e.g., 20% for D. excelsa and 16% for H. nitidum). Our study demonstrates that it is feasible to implement at an operational scale, species-specific retention rules that take into account local abundance when inventory data are digitised and spatially explicit. Monitoring regeneration in the residual stands over time will provide the evidence to assess the ecological benefits of the adoption of our alternative approach.
- Published
- 2008
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47. How rare is too rare to harvest?
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R. Matthew Landis, Edson Vidal, Mark Schulze, and James Grogan
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education.field_of_study ,Seed tree ,Ecology ,Agroforestry ,Population ,Logging ,Rare species ,Forestry ,Management, Monitoring, Policy and Law ,Population ecology ,Felling ,Geography ,Forest ecology ,Vulnerable species ,education ,Nature and Landscape Conservation - Abstract
Tropical forests are characterized by diverse assemblages of plant and animal species compared to temperate forests. Corollary to this general rule is that most tree species, whether valued for timber or not, occur at low densities ( −1 ) or may be locally rare. In the Brazilian Amazon, many of the most highly valued timber species occur at extremely low densities yet are intensively harvested with little regard for impacts on population structures and dynamics. These include big-leaf mahogany ( Swietenia macrophylla ), ipe ( Tabebuia serratifolia and Tabebuia impetiginosa ), jatoba ( Hymenaea courbaril ), and freijo cinza ( Cordia goeldiana ). Brazilian forest regulations prohibit harvests of species that meet the legal definition of rare – fewer than three trees per 100 ha – but treat all species populations exceeding this density threshold equally. In this paper we simulate logging impacts on a group of timber species occurring at low densities that are widely distributed across eastern and southern Amazonia, based on field data collected at four research sites since 1997, asking: under current Brazilian forest legislation, what are the prospects for second harvests on 30-year cutting cycles given observed population structures, growth, and mortality rates? Ecologically ‘rare’ species constitute majorities in commercial species assemblages in all but one of the seven large-scale inventories we analyzed from sites spanning the Amazon (range 49–100% of total commercial species). Although densities of only six of 37 study species populations met the Brazilian legal definition of a rare species, timber stocks of five of the six timber species declined substantially at all sites between first and second harvests in simulations based on legally allowable harvest intensities. Reducing species-level harvest intensity by increasing minimum felling diameters or increasing seed tree retention levels improved prospects for second harvests of those populations with a relatively high proportion of submerchantable stems, but did not dramatically improve projections for populations with relatively flat diameter distributions. We argue that restrictions on logging very low-density timber tree populations, such as the current Brazilian standard, provide inadequate minimum protection for vulnerable species. Population declines, even if reduced-impact logging (RIL) is eventually adopted uniformly, can be anticipated for a large pool of high-value timber species unless harvest intensities are adapted to timber species population ecology, and silvicultural treatments are adopted to remedy poor natural stocking in logged stands.
- Published
- 2008
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48. Short-term community-level response of arthropods to group selection with seed-tree retention in a northern hardwood forest
- Author
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Christopher R. Webster, Andrew J. Storer, and Joshua M. Shields
- Subjects
Betulaceae ,Canopy ,Yellow birch ,Seed tree ,biology ,Ecology ,Soil biology ,Forestry ,Management, Monitoring, Policy and Law ,biology.organism_classification ,Xiphydriidae ,Deciduous ,Temperate rainforest ,Nature and Landscape Conservation - Abstract
We examined the short-term effects of group-selection harvesting with seed-tree retention on ground-dwelling and bark-dwelling arthropod communities in a northern hardwood forest in the Upper Peninsula of Michigan. Arthropods were sampled in 16 group-selection openings and 8 closed canopy reference plots. Two opening sizes were examined—radii of 0.5 (320 ± 27 m2, n = 8) and 1.0 (1217 ± 62 m2, n = 8) times the mean canopy height (22 m). Each opening and reference plot was centered on a single Betula alleghaniensis Britt. (yellow birch). Ground-dwelling arthropods were sampled using pitfall traps that were opened for two 1-week periods (rounds 1 and 2), and bark-dwelling arthropods were sampled with sticky traps attached to the centrally located B. alleghaniensis trees. Family-level diversity of ground-dwelling arthropods was lower in reference plots than in the openings, but the only significant difference occurred during round 2, between the matrix and large openings (P
- Published
- 2008
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49. Vegetation Control Treatments to Favor Naturally Regenerated Betula alleghaniensis Saplings Following Seed-Tree Cut: Sapling Monitoring Two Years after Treatment
- Author
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Sylvain Delagrange, Philippe Nolet, Stephen Yamasaki, Daniel Bouffard, and François Lorenzetti
- Subjects
Yellow birch ,Herbivore ,Biomass (ecology) ,Seed tree ,Ecology ,media_common.quotation_subject ,Biology ,biology.organism_classification ,Population density ,Competition (biology) ,Agronomy ,Etiolation ,Botany ,medicine ,medicine.symptom ,Vegetation (pathology) ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation ,media_common - Abstract
Control of competing vegetation is recommended to ensure successful Yellow birch (Betula alleghaniensis Britton) regeneration within juvenile stands that do not sustain high enough sapling densities of this species. Four contrasting vegetation control treatments were tested to determine their effect on the growth and vigor of eight-year-old B. alleghaniensis saplings regenerating after final cutting of a shelterwood seed cut. Vegetation control treatments were TC (total circular removal), PC (circular removal of codominant competing vegetation), TS (total semicircular removal on 180° section), and NC (no vegetation control). Two years after treatment application, diameter growth significantly improved in response to vegetation control treatments, whereas sapling height growth did not. This pattern of biomass allocation was directly related to sapling etiolation, which increased with decreasing severity of vegetation removal. As a result, application of vegetation control, especially TC and PC treatments, was valuable in reducing signs of stress in saplings. However, increasing the severity of vegetation removal also made saplings more conspicuous to herbivores, which increased browsing, especially in the TC and PC treatments. Browsing was sufficient in some plots of the TC and PC treatments to overcome the vigor and diameter growth enhancements observed when browsing was negligible. In contrast to the TC and PC treatments, the TS treatment kept browsing very low while largely removing competition. The results suggest that B. alleghaniensis saplings established after final cutting of a shelterwood seed cut do take advantage of vegetation control treatments, but the decision to apply these treatments must include consideration of local herbivore population densities.
- Published
- 2007
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50. Factors influencing tree species diversity and Betula alleghaniensis establishment in silvicultural openings
- Author
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Christopher R. Webster, Joshua M. Shields, and Linda M. Nagel
- Subjects
Canopy ,Yellow birch ,Seed tree ,Agronomy ,biology ,Seedling ,Abundance (ecology) ,Botany ,Forestry ,Coarse woody debris ,Microsite ,Vegetation ,biology.organism_classification - Abstract
Summary We examined the short-term effects of group-selection harvesting with seed tree retention on the diversity, abundance and establishment of tree seedlings in a northern hardwood forest in the Upper Peninsula of Michigan (49 openings, 20 closed canopy reference sites). Three opening sizes were examined – opening radius 0.5 × canopy height (267 ± 62 m 2 , n = 16), 0.75 × canopy height (642 ± 85 m 2 , n = 17) and 1.0 × canopy height (1192 ± 155 m 2 , n = 16) (canopy height = 22 m). A single yellow birch (Betula alleghaniensis Britt.) seed tree was retained in the centre of each opening. Tree seedling density was signifi cantly higher in the largest group-selection opening than at the closed canopy reference sites (P < 0.05), the main factor for this was the increased proportion of yellow birch, red maple (Acer rubrum L.) and other minor species. Nevertheless, yellow birch was still a minor component of the developing gap cohort, comprising 5.9 per cent of the seedlings and 1.1 per cent of the saplings. Within openings, microsite variables, such as per cent covers of bare soil and coarse woody debris, were the best predictors of yellow birch occurrence and density. Our results suggest that microsite limitations and competing vegetation may greatly reduce the effi cacy of openings for ensuring the maintenance of mid-tolerants.
- Published
- 2007
- Full Text
- View/download PDF
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