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Disentangling the causes and consequences of ontogenetic niche shifts has been a pivotal challenge in ecology, aiming to enhance the understanding of biological processes that function at the individual, population, and community levels. Studies on ontogenetic dietary shifts have traditionally focused on short time scales, mostly including sampling covering just one or a few consecutive years, thus neglecting possible aspects of temporal variation and ecosystem stability that can only be revealed on long-term scales. We address ontogenetic dietary shifts of two fish predators in an intraguild system (Arctic charr and brown trout) using a long-term dataset spanning 20 consecutive years. Our study revealed distinct ontogenetic niche shifts of the two intraguild predators and demonstrated that these patterns were stable over time, suggesting large stability in prey acquisition and resource partitioning despite changes in their abundances and relative species composition. Some interannual variation was observed, but this was primarily due to sampling bias from low observation numbers for some ontogenetic stages, reflecting a common methodical challenge for ontogenetic niche shift studies. The persistent patterns in the trophic ontogeny of intraguild predators likely facilitate population and community stability by reducing inter- and/or intraspecific competition, thereby having important consequences for ecosystem functioning and resilience. Our study provides a strong rationale for performing ontogenetic niche shift studies over several consecutive years, enabling important insights into temporal variation, enhancement of observation numbers by merging data from multiple years, and the facilitation of a less intrusive sampling scheme for more vulnerable populations.

The release of ornamental pets outside their native range can directly or indirectly impact the recipient community, e.g. via the co-introduction of associated pathogens. However, studies on parasites associated with non-native species, in particular freshwater decapods, have focused mainly on a limited set of pathogens. Here we provide data for the first time on microsporidian parasites of the non-native ornamental shrimp Neocaridina davidi, collected in a stream in Germany. Furthermore, we confirm an ongoing range expansion of the warm-adapted N. davidi from thermally polluted colder water. In the investigated shrimps, the microsporidian parasite Enterocytozoon hepatopenaei and an unknown microsporidian isolate were detected, raising concerns about their transmission potential and pathogenicity on native crustacean species.

Competition is assumed to shape niche widths, affecting species survival and coexistence. Expectedly, high interspecific competition will reduce population niche widths, whereas high intraspecific competition will do the opposite. Here we test in situ how intra- and interspecific competition affects trophic resource use and the individual and population niche widths of two lacustrine fish species, Arctic charr and brown trout, covering a 40 year study period with highly contrasting competitive impacts prior to and following a large-scale fish culling experiment. Initially, an overcrowded Arctic charr population dominated the study system, with brown trout being nearly absent. The culling experiment reduced the littoral Arctic charr density by 80%, whereupon brown trout gradually increased its density in the system. Thus, over the study period, the Arctic charr population went from high to low intraspecific competition, followed by increasing interspecific competition with brown trout. As hypothesized, the relaxed intraspecific competition following the experimental culling reduced individual diet specialization and compressed population niche width of Arctic charr. During the initial increase of the brown trout population, there was a large dietary overlap between the two species. Over the subsequent intensified interspecific competition from the population build-up of brown trout, their trophic niche overlap chiefly declined due to a dietary shift of Arctic charr towards enhanced zooplankton consumption. Contrary to theoretical expectations, the individual and population niche widths of Arctic charr increased with intensified interspecific competition. In contrast, the diet and niche width of brown trout remained stable over time, confirming its competitive superiority. The large-scale culling experiment and associated long-term research revealed pronounced temporal dynamics in trophic niche and resource use of the inferior competitor, substantiating that intra- and interspecific competition have large and contrasting impacts on individual and population niches.

Ontogenetic dietary shifts are common in fish and often impact trophically transmitted parasite communities. How parasite species composition and relative abundances change among size classes, and at what rate these changes occur, is rarely examined. Hosts with a broad trophic niche are potentially exposed to a large variety of parasite species. The degree of ontogenetic changes in parasite species composition versus changes in parasite abundance should suggestively differ between thropically generalist and specialist host species. In the present study, we explore ontogenetic dietary shifts and their impact on species composition and relative abundance of intestinal parasites in two sympatric salmonid fish species, Arctic charr (Salvelinus alpinus) and brown trout (Salmo trutta) caught in the littoral habitat of a subarctic lake. Our results highlight a close interplay between ontogenetic dietary niche shifts and alterations in the acquisition of trophically transmitted parasites, leading to host-specific differences in the component community of parasites. Ontogenetic changes in the intestinal parasite community related to dietary niche shifts were distinct but less pronounced in Arctic charr than in brown trout due to a broader and more consistent dietary niche of the former and an ontogenetic shift toward piscivory in the latter. At the component community level, changes in parasite assemblages of both host species were driven by a faster increase in the heterogeneity of parasite relative abundance than in the compositional heterogeneity, a pattern that partly may be related to a rather species-poor parasite community of this subarctic study system. Separating compositional heterogeneity from heterogeneity in relative parasite abundance is important to understand how size-dependent variability shapes parasite communities of host populations., Graphical abstract Image 1, Highlights • Ontogenetic dietary niche shifts generated host-specific differences in the component community of parasites. • Ontogenetic changes in the intestinal parasite community were less pronounced in Arctic charr than in brown trout. • Heterogeneity of parasite relative abundance increased faster than the compositional heterogeneity.

The present study provides new insight into suitable microsporidian–host associations. It relates regional and continental-wide host specialization in microsporidians infecting amphipods to degraded and recovering habitats across 2 German river catchments. It provides a unique opportunity to infer the persistence of parasites following anthropogenic disturbance and their establishment in restored rivers. Amphipods were collected in 31 sampling sites with differing degradation and restoration gradients. Specimens were morphologically (hosts) and molecularly identified (host and parasites). Amphipod diversity and abundance, microsporidian diversity, host phylogenetic specificity and continental-wide β-specificity were investigated and related to each other and/or environmental variables. Fourteen microsporidian molecular operational taxonomic units (MOTUs), mainly generalist parasites, infecting 6 amphipod MOTUs were detected, expanding the current knowledge on the host range by 17 interactions. There was no difference in microsporidian diversity and host specificity among restored and near-natural streams (Boye) or between those located in urban and rural areas (Kinzig). Similarly, microsporidian diversity was generally not influenced by water parameters. In the Boye catchment, host densities did not influence microsporidian MOTU richness across restored and near-natural sites. High host turnover across the geographical range suggests that neither environmental conditions nor host diversity plays a significant role in the establishment into restored areas. Host diversity and environmental parameters do not indicate the persistence and dispersal of phylogenetic host generalist microsporidians in environments that experienced anthropogenic disturbance. Instead, these might depend on more complex mechanisms such as the production of resistant spores, host switching and host dispersal acting individually or conjointly.

Concomitant predation, which occurs when parasites are consumed and digested along with their hosts, has previously been suggested as a profound factor determining food web structure. Few studies have adressed the impact of concomitant predation in research on behaviourally parasite-modified prey or in biological control studies. However, empirical evidence of concomitant predation effects on hosts infected with multiple parasite taxa is lacking. We investigated the importance of concomitant predation on digenean trematodes by examining the degree of snail (Radix balthica, first intermediate host) seasonal predation by Arctic charr (Salvelinus alpinus) and brown trout (Salmo trutta) by contrasting infection rates of free-living snails obtained from a lake vs predated snails retrieved from fish stomachs and intestines. The fish consumed infected snails nearly at all seasons, demonstrating that concomitant predation in the model subarctic lake is common, likely indirectly affecting trematode transmission by reducing host and parasite populations. The overall trematode prevalence in both snail groups was season-independent, being however substantially higher in free-living compared to predated snails. The net effects of underlying mechanisms related to prey availability, fish feeding ecology, continuous presence of dominant trematodes and, most importantly, size of fish and snails drove the strength of predator-prey interactions and infection patterns in both snail groups. Larger fish preying upon larger snails, which simultaneously harboured more infections, may induce a substiantial negative effect of concomitant predation on snail and parasite population dynamics, with serious implications for food web structure and ecosystem functioning. This study contributes to a better understanding of the role of non-host predators in regulating trematode infection, community structure and transmisison patterns, biomass transfer and energy flow in food webs. Our findings also highlight the importance of studying the impact and extent of concomitant predation in terms of parasite seasonal dynamics and biological control of infectious diseases.

Over the last two decades, the use of DNA barcodes has transformed our ability to identify and assess life on our planet. Both strengths and weaknesses of the method have been exemplified through thousands of peer-reviewed scientific articles. Given the novel sequencing approaches, currently capable of generating millions of reads at low cost, we reflect on the questions: What will the future bring for DNA barcoding? Will identification of species using short, standardized fragments of DNA stand the test of time? We present reflected opinions of early career biodiversity researchers in the form of a SWOT analysis and discuss answers to these questions., The Research School in Biosystematics (ForBio) is supported by a grant from the Norwegian Biodiversity Information Centre.

Use of virtual proxies of live animals are rapidly gaining ground in studies of animal behaviour. Such proxies help to reduce the number of live experimental animals needed to stimulate the behaviour of experimental individuals and to increase standardisation. However, using too simplistic proxies may fail to induce a desired effect and/or lead to quick habituation. For instance, in a predation context, prey often employ multimodal cues to detect predators or use specific aspects of predator behaviour to assess threat. In a live interaction, predator and prey often show behaviours directed towards each other, which are absent in virtual proxies. Here we compared the effectiveness of chemical and visual predator cues in the cooperatively breeding cichlid Neolamprologus pulcher, a species in which predation pressure has been the evolutionary driver of its sociality. We created playbacks of predators simulating an attack and tested their effectiveness in comparison to a playback showing regular activity and to a live predator. We further compared the effectiveness of predator odour and conspecific skin extracts on behaviours directed towards a predator playback. Regular playbacks of calmly swimming predators were less effective than live predators in stimulating a focal individual’s aggression and attention. However, playbacks mimicking an attacking predator induced responses much like a live predator. Chemical cues did not affect predator directed behaviour.