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2. A multinational Delphi consensus to end the COVID-19 public health threat

Author

Lazarus, J. V., Romero, D., Kopka, C. J., Karim, S. A., Abu-Raddad, L. J., Almeida, G., Baptista-Leite, R., Barocas, J. A., Barreto, M. L., Bar-Yam, Y., Bassat, Q., Batista, C., Bazilian, M., Chiou, S. -T., del Rio, C., Dore, G. J., Gao, G. F., Gostin, L. O., Hellard, M., Jimenez, J. L., Kang, G., Lee, N., Maticic, M., Mckee, M., Nsanzimana, S., Oliu-Barton, M., Pradelski, B., Pyzik, O., Rabin, K., Raina, S., Rashid, S. F., Rathe, M., Saenz, R., Singh, S., Trock-Hempler, M., Villapol, S., Yap, P., Binagwaho, A., Kamarulzaman, A., El-Mohandes, A., Barreto, M., Abdulla, S., Addleman, S., Aghayeva, G., Agius, R., Ahmed, M., Ramy, M. A., Aide, P., Aleman, S., Alfred, J. -P., Ali, S., Aliaga, J., Aloudat, T., Alqahtani, S. A., Al-Salman, J., Amuasi, J. H., Agrawal, A., Anwar, W., Araujo-Jorge, T., Artaza, O., Asadi, L., Awuku, Y., Baker, M., Barberia, L., Bascolo, E., Belcher, P., Bell, L., Benzaken, A., Bergholtz, E., Bhadelia, N., Bhan, A., Bilodeau, S., Bitran, R., Bluyssen, P., Bosman, A., Bozza, F. A., Brinkmann, M. M., Brown, A., Mellado, B., Bukusi, E., Bullen, C., Buonanno, G., Burgess, R., Butler, M., Byakika-Kibwika, P., Cabieses, B., Carlsson, G., Cascini, Fidelia, Chabala, C., Chakroun, M., Cheng, K. K., Chetty, A., Chumachenko, D., Consalves, G., Conway Morris, A., Cordie, A., Corrah, T., Crabtree-Ramirez, B., Dashdorj, N., Davidovitch, N., de Souza, L. E., Dhariwal, A. C., Druica, E., Ergonul, O., Erondu, N. A., Essar, M. Y., Ewing, A., Fanjul, G., Feierstein, D., Feigl-Ding, E., Figueroa, R., Figueroa, J. P., Fisher, D., Flores, W., Forero-Pena, D. A., Frumkin, H., Gamkrelidze, A., Gandhi, M., Garcia, P., Garcia-Basteiro, A. L., Garcia-Sastre, A., Garg, S., Gbeasor-Komlanvi, F. A., Gershenson, C., Gilada, I., Giovanella, L., Gonzalez, M., Green, M. S., Greenhalgh, T., Griffin, P., Griffin, S., Grinsztejn, B., Anand, T., Guerra, G., Guinto, R., Gujski, M., Guner, R., Hamdy, A., Hancean, M. -G., Haniffa, A., Hartigan-Go, K. Y., Hassan, H. K., Hay, S. I., Heino, M. T. J., Hel, Z., Hotez, P., Hu, J., Hukic, M., Ijsselmuiden, C., Iroko, D., Iskarous, M., Izugbara, C., Jacobs, C., Jadad, A. R., Jehan, F., Jordan, A., Jroundi, I., Kain, K., Kamberi, F., Karamov, E., Karan, A., Katz, R., Katzourakis, A., Kazembe, A., Khamis, F., Khamzayev, K., Khanyola, J., Khunti, K., Kiguli-Malwadde, E., Kim, W. J., Kirenga, B. J., Klimovsky, D., Kmush, B. L., Knaul, F., Kogevinas, M., Kristensen, F., Kumar, D., Kumar, R., Kvalsvig, A., Lacerda, M. V., Lal, A., Lawton, T., Lemery, J., Leonardi, A. J., Li, Y., Lottvall, J., Lounis, M., Maceira, D., Macintyre, C. R., Madani, A., Magiorkinis, G., Malekzadeh, R., Choisy, M., Marcelin, J. R., Marks, G. B., Marr, L., Marrazzo, J., Martina, A., Martin-Moreno, J. M., Mateos, C., Mayxay, M., Mazarati, J. B., Mboup, S., Mcdonald, J., Mcmillan, F., Mechili, E., Medici, A., Davis, S. L. M., Meier, P., Memish, Z. A., Menon, J., Menon, P., Mesiano-Crookston, J., Michie, S., Mikolasevic, I., Milicevic, O., Mishra, A. K., Mohamed, R., Mokdad, A. H., Monroy-Valle, M., Morawska, L., Moschos, S. A., Motawea, K., Mousavi, S. H., Mumtaz, G., Munene, P. K., Munoz Almagro, C., Muriuki, J., Muyingo, S., Naniche, D., Naylor, C. D., Ndembi, N., Nemec, J., Nesteruk, I., Ngaruiya, C., Nguyen, H., Nikolova, D., Nitzan, D., Norheim, O., Noushad, M., Ntoumi, F., Nyborg, G. A., Ochodo, E., Odabasi, Z., Okwen, M. P., Olivia, K., Ong, D. S. Y., Opara, I., Orozco, M., Oshitani, H., Pagel, C., Pai, M., Palsdottir, B., Papatheodoridis, G., Paraskevis, D., Leigh, J. P., Pecoul, B., Peichl, A., Perez-Then, E., Duc, P. P., Philippe, C., Pineda Rojas, A., Pladsen, C., Pozniak, A., Quiroga, R., Qureshi, H., Rampal, S., Ranney, M., Rathe, L., Ratzan, S., Raventos, H., Rees, H., Reis, R., Ricciardi, Walter, Rizk, N., Robalo, M., Robertson, E., Robinson, L., Rokx, C., Ros, T., Rottingen, J. -A., Rubin, M., Ruxrungtam, K., Sadirova, S., Saha, S., Salgado, N., Sanchez, L., Sangaramoorthy, T., Santamaria-Ulloa, C., Santos, R., Sawaf, B., Schneider, M. F., Schooley, R. T., Sener, A., Sepulveda, J., Shah, J., Shibani, M., Shoib, S., Sikazwe, I., Simaitis, A., Gill, A. S., Skhvitaridze, N., Sokolovic, M., Solomon, R., Solorzano, X., Springer, S. A., Srol, J., Staines, A., Stelfox, H. T., Strathdee, S., Sulaiman, L. H., Sutton, B., Svanaes, D., Swed, S., Sypsa, V., Sorensen, K., Tajudeen, R., Tan, A., Tang, J., Tanner, M., Sethi, T., Temmerman, M., Than, K. K., Tinto, H., Tometissi, S. P., Torres, I., Tshering, K. P., Tsiodras, S., Tsofa, B., Vahlne, A., Vargas, J. R., Bernal, I. D. V., Ventura, D., Vilasanjuan, R., Vipond, J., Wamala-Andersson, S., Wargocki, P., West, R., Weyand, A., White, T. M., Wolff, G., Yao, M., Yates, C. A., Yeboah, G., Yee-Sin, L., Yi, S., Teo, Y. -Y., Yong, P., Zamora-Mesia, V., Ovrehus, A., Cascini F. (ORCID:0000-0001-6499-0734), Ricciardi W. (ORCID:0000-0002-5655-688X), Lazarus, J. V., Romero, D., Kopka, C. J., Karim, S. A., Abu-Raddad, L. J., Almeida, G., Baptista-Leite, R., Barocas, J. A., Barreto, M. L., Bar-Yam, Y., Bassat, Q., Batista, C., Bazilian, M., Chiou, S. -T., del Rio, C., Dore, G. J., Gao, G. F., Gostin, L. O., Hellard, M., Jimenez, J. L., Kang, G., Lee, N., Maticic, M., Mckee, M., Nsanzimana, S., Oliu-Barton, M., Pradelski, B., Pyzik, O., Rabin, K., Raina, S., Rashid, S. F., Rathe, M., Saenz, R., Singh, S., Trock-Hempler, M., Villapol, S., Yap, P., Binagwaho, A., Kamarulzaman, A., El-Mohandes, A., Barreto, M., Abdulla, S., Addleman, S., Aghayeva, G., Agius, R., Ahmed, M., Ramy, M. A., Aide, P., Aleman, S., Alfred, J. -P., Ali, S., Aliaga, J., Aloudat, T., Alqahtani, S. A., Al-Salman, J., Amuasi, J. H., Agrawal, A., Anwar, W., Araujo-Jorge, T., Artaza, O., Asadi, L., Awuku, Y., Baker, M., Barberia, L., Bascolo, E., Belcher, P., Bell, L., Benzaken, A., Bergholtz, E., Bhadelia, N., Bhan, A., Bilodeau, S., Bitran, R., Bluyssen, P., Bosman, A., Bozza, F. A., Brinkmann, M. M., Brown, A., Mellado, B., Bukusi, E., Bullen, C., Buonanno, G., Burgess, R., Butler, M., Byakika-Kibwika, P., Cabieses, B., Carlsson, G., Cascini, Fidelia, Chabala, C., Chakroun, M., Cheng, K. K., Chetty, A., Chumachenko, D., Consalves, G., Conway Morris, A., Cordie, A., Corrah, T., Crabtree-Ramirez, B., Dashdorj, N., Davidovitch, N., de Souza, L. E., Dhariwal, A. C., Druica, E., Ergonul, O., Erondu, N. A., Essar, M. Y., Ewing, A., Fanjul, G., Feierstein, D., Feigl-Ding, E., Figueroa, R., Figueroa, J. P., Fisher, D., Flores, W., Forero-Pena, D. A., Frumkin, H., Gamkrelidze, A., Gandhi, M., Garcia, P., Garcia-Basteiro, A. L., Garcia-Sastre, A., Garg, S., Gbeasor-Komlanvi, F. A., Gershenson, C., Gilada, I., Giovanella, L., Gonzalez, M., Green, M. S., Greenhalgh, T., Griffin, P., Griffin, S., Grinsztejn, B., Anand, T., Guerra, G., Guinto, R., Gujski, M., Guner, R., Hamdy, A., Hancean, M. -G., Haniffa, A., Hartigan-Go, K. Y., Hassan, H. K., Hay, S. I., Heino, M. T. J., Hel, Z., Hotez, P., Hu, J., Hukic, M., Ijsselmuiden, C., Iroko, D., Iskarous, M., Izugbara, C., Jacobs, C., Jadad, A. R., Jehan, F., Jordan, A., Jroundi, I., Kain, K., Kamberi, F., Karamov, E., Karan, A., Katz, R., Katzourakis, A., Kazembe, A., Khamis, F., Khamzayev, K., Khanyola, J., Khunti, K., Kiguli-Malwadde, E., Kim, W. J., Kirenga, B. J., Klimovsky, D., Kmush, B. L., Knaul, F., Kogevinas, M., Kristensen, F., Kumar, D., Kumar, R., Kvalsvig, A., Lacerda, M. V., Lal, A., Lawton, T., Lemery, J., Leonardi, A. J., Li, Y., Lottvall, J., Lounis, M., Maceira, D., Macintyre, C. R., Madani, A., Magiorkinis, G., Malekzadeh, R., Choisy, M., Marcelin, J. R., Marks, G. B., Marr, L., Marrazzo, J., Martina, A., Martin-Moreno, J. M., Mateos, C., Mayxay, M., Mazarati, J. B., Mboup, S., Mcdonald, J., Mcmillan, F., Mechili, E., Medici, A., Davis, S. L. M., Meier, P., Memish, Z. A., Menon, J., Menon, P., Mesiano-Crookston, J., Michie, S., Mikolasevic, I., Milicevic, O., Mishra, A. K., Mohamed, R., Mokdad, A. H., Monroy-Valle, M., Morawska, L., Moschos, S. A., Motawea, K., Mousavi, S. H., Mumtaz, G., Munene, P. K., Munoz Almagro, C., Muriuki, J., Muyingo, S., Naniche, D., Naylor, C. D., Ndembi, N., Nemec, J., Nesteruk, I., Ngaruiya, C., Nguyen, H., Nikolova, D., Nitzan, D., Norheim, O., Noushad, M., Ntoumi, F., Nyborg, G. A., Ochodo, E., Odabasi, Z., Okwen, M. P., Olivia, K., Ong, D. S. Y., Opara, I., Orozco, M., Oshitani, H., Pagel, C., Pai, M., Palsdottir, B., Papatheodoridis, G., Paraskevis, D., Leigh, J. P., Pecoul, B., Peichl, A., Perez-Then, E., Duc, P. P., Philippe, C., Pineda Rojas, A., Pladsen, C., Pozniak, A., Quiroga, R., Qureshi, H., Rampal, S., Ranney, M., Rathe, L., Ratzan, S., Raventos, H., Rees, H., Reis, R., Ricciardi, Walter, Rizk, N., Robalo, M., Robertson, E., Robinson, L., Rokx, C., Ros, T., Rottingen, J. -A., Rubin, M., Ruxrungtam, K., Sadirova, S., Saha, S., Salgado, N., Sanchez, L., Sangaramoorthy, T., Santamaria-Ulloa, C., Santos, R., Sawaf, B., Schneider, M. F., Schooley, R. T., Sener, A., Sepulveda, J., Shah, J., Shibani, M., Shoib, S., Sikazwe, I., Simaitis, A., Gill, A. S., Skhvitaridze, N., Sokolovic, M., Solomon, R., Solorzano, X., Springer, S. A., Srol, J., Staines, A., Stelfox, H. T., Strathdee, S., Sulaiman, L. H., Sutton, B., Svanaes, D., Swed, S., Sypsa, V., Sorensen, K., Tajudeen, R., Tan, A., Tang, J., Tanner, M., Sethi, T., Temmerman, M., Than, K. K., Tinto, H., Tometissi, S. P., Torres, I., Tshering, K. P., Tsiodras, S., Tsofa, B., Vahlne, A., Vargas, J. R., Bernal, I. D. V., Ventura, D., Vilasanjuan, R., Vipond, J., Wamala-Andersson, S., Wargocki, P., West, R., Weyand, A., White, T. M., Wolff, G., Yao, M., Yates, C. A., Yeboah, G., Yee-Sin, L., Yi, S., Teo, Y. -Y., Yong, P., Zamora-Mesia, V., Ovrehus, A., Cascini F. (ORCID:0000-0001-6499-0734), and Ricciardi W. (ORCID:0000-0002-5655-688X)

Abstract

Despite notable scientific and medical advances, broader political, socioeconomic and behavioural factors continue to undercut the response to the COVID-19 pandemic1,2. Here we convened, as part of this Delphi study, a diverse, multidisciplinary panel of 386 academic, health, non-governmental organization, government and other experts in COVID-19 response from 112 countries and territories to recommend specific actions to end this persistent global threat to public health. The panel developed a set of 41 consensus statements and 57 recommendations to governments, health systems, industry and other key stakeholders across six domains: communication; health systems; vaccination; prevention; treatment and care; and inequities. In the wake of nearly three years of fragmented global and national responses, it is instructive to note that three of the highest-ranked recommendations call for the adoption of whole-of-society and whole-of-government approaches1, while maintaining proven prevention measures using a vaccines-plus approach2 that employs a range of public health and financial support measures to complement vaccination. Other recommendations with at least 99% combined agreement advise governments and other stakeholders to improve communication, rebuild public trust and engage communities3 in the management of pandemic responses. The findings of the study, which have been further endorsed by 184 organizations globally, include points of unanimous agreement, as well as six recommendations with >5% disagreement, that provide health and social policy actions to address inadequacies in the pandemic response and help to bring this public health threat to an end.

Published
2022

6. Antiretroviral Therapies in Women after Single-Dose Nevirapine Exposure

Author

Lockman, S., Hughes, M. D., McIntyre, J., Zheng, Y., Chipato, T., Conradie, F., Sawe, F., Asmelash, A., Hosseinipour, M. C., Mohapi, L., Stringer, E., Mngqibisa, R., Siika, A., Atwine, D., Hakim, J., Shaffer, D., Kanyama, C., Wools-Kaloustian, K., Salata, R. A., Hogg, E., Alston-Smith, B., Walawander, A., Purcelle-Smith, E., Eshleman, S., Rooney, J., Rahim, S., Mellors, J. W., Schooley, R. T., and Currier, J. S.

Published
2010
Full Text
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12. BioTIME: a database of biodiversity time series for the Anthropocene

Author

Dornelas, M, Antão, LH, Moyes, F, Bates, AE, Magurran, AE, Adam, D, Akhmetzhanova, AA, Appeltans, W, Arcos, JM, Arnold, H, Ayyappan, N, Badihi, G, Baird, AH, Barbosa, M, Barreto, TE, Bässler, C, Bellgrove, Alecia, Belmaker, J, Benedetti-Cecchi, L, Bett, BJ, Bjorkman, AD, Błażewicz, M, Blowes, SA, Bloch, CP, Bonebrake, TC, Boyd, S, Bradford, M, Brooks, AJ, Brown, JH, Bruelheide, H, Budy, P, Carvalho, F, Castañeda-Moya, E, Chen, CA, Chamblee, JF, Chase, TJ, Siegwart Collier, L, Collinge, SK, Condit, R, Cooper, EJ, Cornelissen, JHC, Cotano, U, Kyle Crow, S, Damasceno, G, Davies, CH, Davis, RA, Day, FP, Degraer, S, Doherty, Timothy, Dunn, TE, Durigan, G, Duffy, JE, Edelist, D, Edgar, GJ, Elahi, R, Elmendorf, SC, Enemar, A, Ernest, SKM, Escribano, R, Estiarte, M, Evans, BS, Fan, T-Y, Turini Farah, F, Loureiro Fernandes, L, Farneda, FZ, Fidelis, A, Fitt, R, Fosaa, AM, Daher Correa Franco, GA, Frank, GE, Fraser, WR, García, H, Cazzolla Gatti, R, Givan, O, Gorgone-Barbosa, E, Gould, WA, Gries, C, Grossman, GD, Gutierréz, JR, Hale, S, Harmon, ME, Harte, J, Haskins, G, Henshaw, DL, Hermanutz, L, Hidalgo, P, Higuchi, P, Hoey, A, Van Hoey, G, Hofgaard, A, Holeck, K, Hollister, RD, Holmes, R, Hoogenboom, M, Hsieh, C-H, Hubbell, SP, Huettmann, F, Huffard, CL, Hurlbert, AH, Macedo Ivanauskas, N, Janík, D, Jandt, U, Jażdżewska, A, Johannessen, T, Johnstone, J, Jones, J, Jones, FAM, Kang, J, Kartawijaya, T, Keeley, EC, Kelt, DA, Kinnear, R, Klanderud, K, Knutsen, H, Koenig, CC, Kortz, AR, Král, K, Kuhnz, LA, Kuo, C-Y, Kushner, DJ, Laguionie-Marchais, C, Lancaster, LT, Min Lee, C, Lefcheck, JS, Lévesque, E, Lightfoot, D, Lloret, F, Lloyd, JD, López-Baucells, A, Louzao, M, Madin, JS, Magnússon, B, Malamud, S, Matthews, I, McFarland, KP, McGill, B, McKnight, D, McLarney, WO, Meador, J, Meserve, PL, Metcalfe, DJ, Meyer, CFJ, Michelsen, A, Milchakova, N, Moens, T, Moland, E, Moore, J, Mathias Moreira, C, Müller, J, Murphy, G, Myers-Smith, IH, Myster, RW, Naumov, A, Neat, F, Nelson, JA, Paul Nelson, M, Newton, SF, Norden, N, Oliver, JC, Olsen, EM, Onipchenko, VG, Pabis, K, Pabst, RJ, Paquette, A, Pardede, S, Paterson, DM, Pélissier, R, Peñuelas, J, Pérez-Matus, A, Pizarro, O, Pomati, F, Post, E, Prins, HHT, Priscu, JC, Provoost, P, Prudic, KL, Pulliainen, E, Ramesh, BR, Mendivil Ramos, O, Rassweiler, A, Rebelo, JE, Reed, DC, Reich, PB, Remillard, SM, Richardson, AJ, Richardson, JP, van Rijn, I, Rocha, R, Rivera-Monroy, VH, Rixen, C, Robinson, KP, Ribeiro Rodrigues, R, de Cerqueira Rossa-Feres, D, Rudstam, L, Ruhl, H, Ruz, CS, Sampaio, EM, Rybicki, N, Rypel, A, Sal, S, Salgado, B, Santos, FAM, Savassi-Coutinho, AP, Scanga, S, Schmidt, J, Schooley, R, Setiawan, F, Shao, K-T, Shaver, GR, Sherman, S, Sherry, TW, Siciński, J, Sievers, C, da Silva, AC, Rodrigues da Silva, F, Silveira, FL, Slingsby, J, Smart, T, Snell, SJ, Soudzilovskaia, NA, Souza, GBG, Maluf Souza, F, Castro Souza, V, Stallings, CD, Stanforth, R, Stanley, EH, Mauro Sterza, J, Stevens, M, Stuart-Smith, R, Rondon Suarez, Y, Supp, S, Yoshio Tamashiro, J, Tarigan, S, Thiede, GP, Thorn, S, Tolvanen, A, Teresa Zugliani Toniato, M, Totland, Ø, Twilley, RR, Vaitkus, G, Valdivia, N, Vallejo, MI, Valone, TJ, Van Colen, C, Vanaverbeke, J, Venturoli, F, Verheye, HM, Vianna, M, Vieira, RP, Vrška, T, Quang Vu, C, Van Vu, L, Waide, RB, Waldock, C, Watts, D, Webb, S, Wesołowski, T, White, EP, Widdicombe, CE, Wilgers, D, Williams, R, Williams, SB, Williamson, M, Willig, MR, Willis, TJ, Wipf, S, Woods, KD, Woehler, EJ, Zawada, K, Zettler, ML, Hickler, T, Dornelas, M, Antão, LH, Moyes, F, Bates, AE, Magurran, AE, Adam, D, Akhmetzhanova, AA, Appeltans, W, Arcos, JM, Arnold, H, Ayyappan, N, Badihi, G, Baird, AH, Barbosa, M, Barreto, TE, Bässler, C, Bellgrove, Alecia, Belmaker, J, Benedetti-Cecchi, L, Bett, BJ, Bjorkman, AD, Błażewicz, M, Blowes, SA, Bloch, CP, Bonebrake, TC, Boyd, S, Bradford, M, Brooks, AJ, Brown, JH, Bruelheide, H, Budy, P, Carvalho, F, Castañeda-Moya, E, Chen, CA, Chamblee, JF, Chase, TJ, Siegwart Collier, L, Collinge, SK, Condit, R, Cooper, EJ, Cornelissen, JHC, Cotano, U, Kyle Crow, S, Damasceno, G, Davies, CH, Davis, RA, Day, FP, Degraer, S, Doherty, Timothy, Dunn, TE, Durigan, G, Duffy, JE, Edelist, D, Edgar, GJ, Elahi, R, Elmendorf, SC, Enemar, A, Ernest, SKM, Escribano, R, Estiarte, M, Evans, BS, Fan, T-Y, Turini Farah, F, Loureiro Fernandes, L, Farneda, FZ, Fidelis, A, Fitt, R, Fosaa, AM, Daher Correa Franco, GA, Frank, GE, Fraser, WR, García, H, Cazzolla Gatti, R, Givan, O, Gorgone-Barbosa, E, Gould, WA, Gries, C, Grossman, GD, Gutierréz, JR, Hale, S, Harmon, ME, Harte, J, Haskins, G, Henshaw, DL, Hermanutz, L, Hidalgo, P, Higuchi, P, Hoey, A, Van Hoey, G, Hofgaard, A, Holeck, K, Hollister, RD, Holmes, R, Hoogenboom, M, Hsieh, C-H, Hubbell, SP, Huettmann, F, Huffard, CL, Hurlbert, AH, Macedo Ivanauskas, N, Janík, D, Jandt, U, Jażdżewska, A, Johannessen, T, Johnstone, J, Jones, J, Jones, FAM, Kang, J, Kartawijaya, T, Keeley, EC, Kelt, DA, Kinnear, R, Klanderud, K, Knutsen, H, Koenig, CC, Kortz, AR, Král, K, Kuhnz, LA, Kuo, C-Y, Kushner, DJ, Laguionie-Marchais, C, Lancaster, LT, Min Lee, C, Lefcheck, JS, Lévesque, E, Lightfoot, D, Lloret, F, Lloyd, JD, López-Baucells, A, Louzao, M, Madin, JS, Magnússon, B, Malamud, S, Matthews, I, McFarland, KP, McGill, B, McKnight, D, McLarney, WO, Meador, J, Meserve, PL, Metcalfe, DJ, Meyer, CFJ, Michelsen, A, Milchakova, N, Moens, T, Moland, E, Moore, J, Mathias Moreira, C, Müller, J, Murphy, G, Myers-Smith, IH, Myster, RW, Naumov, A, Neat, F, Nelson, JA, Paul Nelson, M, Newton, SF, Norden, N, Oliver, JC, Olsen, EM, Onipchenko, VG, Pabis, K, Pabst, RJ, Paquette, A, Pardede, S, Paterson, DM, Pélissier, R, Peñuelas, J, Pérez-Matus, A, Pizarro, O, Pomati, F, Post, E, Prins, HHT, Priscu, JC, Provoost, P, Prudic, KL, Pulliainen, E, Ramesh, BR, Mendivil Ramos, O, Rassweiler, A, Rebelo, JE, Reed, DC, Reich, PB, Remillard, SM, Richardson, AJ, Richardson, JP, van Rijn, I, Rocha, R, Rivera-Monroy, VH, Rixen, C, Robinson, KP, Ribeiro Rodrigues, R, de Cerqueira Rossa-Feres, D, Rudstam, L, Ruhl, H, Ruz, CS, Sampaio, EM, Rybicki, N, Rypel, A, Sal, S, Salgado, B, Santos, FAM, Savassi-Coutinho, AP, Scanga, S, Schmidt, J, Schooley, R, Setiawan, F, Shao, K-T, Shaver, GR, Sherman, S, Sherry, TW, Siciński, J, Sievers, C, da Silva, AC, Rodrigues da Silva, F, Silveira, FL, Slingsby, J, Smart, T, Snell, SJ, Soudzilovskaia, NA, Souza, GBG, Maluf Souza, F, Castro Souza, V, Stallings, CD, Stanforth, R, Stanley, EH, Mauro Sterza, J, Stevens, M, Stuart-Smith, R, Rondon Suarez, Y, Supp, S, Yoshio Tamashiro, J, Tarigan, S, Thiede, GP, Thorn, S, Tolvanen, A, Teresa Zugliani Toniato, M, Totland, Ø, Twilley, RR, Vaitkus, G, Valdivia, N, Vallejo, MI, Valone, TJ, Van Colen, C, Vanaverbeke, J, Venturoli, F, Verheye, HM, Vianna, M, Vieira, RP, Vrška, T, Quang Vu, C, Van Vu, L, Waide, RB, Waldock, C, Watts, D, Webb, S, Wesołowski, T, White, EP, Widdicombe, CE, Wilgers, D, Williams, R, Williams, SB, Williamson, M, Willig, MR, Willis, TJ, Wipf, S, Woods, KD, Woehler, EJ, Zawada, K, Zettler, ML, and Hickler, T

Published
2018

13. Phage Therapy for a Multidrug-Resistant Acinetobacter baumannii Craniectomy Site Infection.

Author

LaVergne, Stephanie, LaVergne, Stephanie, Hamilton, Theron, Biswas, Biswajit, Kumaraswamy, M, Schooley, R, Wooten, Darcy, LaVergne, Stephanie, LaVergne, Stephanie, Hamilton, Theron, Biswas, Biswajit, Kumaraswamy, M, Schooley, R, and Wooten, Darcy

Abstract

In the era of antibiotic resistance, alternative treatment options for multidrug-resistant bacterial infections are being explored. We present a case of multidrug-resistant Acinetobacter baumannii infection treated with bacteriophages. Clinical trials are needed to further investigate bacteriophage therapy as an option to treat multidrug-resistant bacterial infections.

Published
2018

14. BioTIME:a database of biodiversity time series for the Anthropocene

Author

Dornelas, M. (Maria), Antao, L. H. (Laura H.), Moyes, F. (Faye), Bates, A. E. (Amanda E.), Magurran, A. E. (Anne E.), Adam, D. (Dusan), Akhmetzhanova, A. A. (Asem A.), Appeltans, W. (Ward), Arcos, J. M. (Jose Manuel), Arnold, H. (Haley), Ayyappan, N. (Narayanan), Badihi, G. (Gal), Baird, A. H. (Andrew H.), Barbosa, M. (Miguel), Barreto, T. E. (Tiago Egydio), Baessler, C. (Claus), Bellgrove, A. (Alecia), Belmaker, J. (Jonathan), Benedetti-Cecchi, L. (Lisandro), Bett, B. J. (Brian J.), Bjorkman, A. D. (Anne D.), Blazewicz, M. (Magdalena), Blowes, S. A. (Shane A.), Bloch, C. P. (Christopher P.), Bonebrake, T. C. (Timothy C.), Boyd, S. (Susan), Bradford, M. (Matt), Brooks, A. J. (Andrew J.), Brown, J. H. (James H.), Bruelheide, H. (Helge), Budy, P. (Phaedra), Carvalho, F. (Fernando), Castaneda-Moya, E. (Edward), Chen, C. A. (Chaolun Allen), Chamblee, J. F. (John F.), Chase, T. J. (Tory J.), Siegwart Collier, L. (Laura), Collinge, S. K. (Sharon K.), Condit, R. (Richard), Cooper, E. J. (Elisabeth J.), Cornelissen, J. H. (J. Hans C.), Cotano, U. (Unai), Crow, S. K. (Shannan Kyle), Damasceno, G. (Gabriella), Davies, C. H. (Claire H.), Davis, R. A. (Robert A.), Day, F. P. (Frank P.), Degraer, S. (Steven), Doherty, T. S. (Tim S.), Dunn, T. E. (Timothy E.), Durigan, G. (Giselda), Duffy, J. E. (J. Emmett), Edelist, D. (Dor), Edgar, G. J. (Graham J.), Elahi, R. (Robin), Elmendorf, S. C. (Sarah C.), Enemar, A. (Anders), Ernest, S. K. (S. K. Morgan), Escribano, R. (Ruben), Estiarte, M. (Marc), Evans, B. S. (Brian S.), Fan, T.-Y. (Tung-Yung), Farah, F. T. (Fabiano Turini), Fernandes, L. L. (Luiz Loureiro), Farneda, F. Z. (Fabio Z.), Fidelis, A. (Alessandra), Fitt, R. (Robert), Fosaa, A. M. (Anna Maria), Daher Correa Franco, G. A. (Geraldo Antonio), Frank, G. E. (Grace E.), Fraser, W. R. (William R.), Garcia, H. (Hernando), Gatti, R. C. (Roberto Cazzolla), Givan, O. (Or), Gorgone-Barbosa, E. (Elizabeth), Gould, W. A. (William A.), Gries, C. (Corinna), Grossman, G. D. (Gary D.), Gutierrez, J. R. (Julio R.), Hale, S. (Stephen), Harmon, M. E. (Mark E.), Harte, J. (John), Haskins, G. (Gary), Henshaw, D. L. (Donald L.), Hermanutz, L. (Luise), Hidalgo, P. (Pamela), Higuchi, P. (Pedro), Hoey, A. (Andrew), Van Hoey, G. (Gert), Hofgaard, A. (Annika), Holeck, K. (Kristen), Hollister, R. D. (Robert D.), Holmes, R. (Richard), Hoogenboom, M. (Mia), Hsieh, C.-h. (Chih-hao), Hubbell, S. P. (Stephen P.), Huettmann, F. (Falk), Huffard, C. L. (Christine L.), Hurlbert, A. H. (Allen H.), Ivanauskas, N. M. (Natalia Macedo), Janik, D. (David), Jandt, U. (Ute), Jazdzewska, A. (Anna), Johannessen, T. (Tore), Johnstone, J. (Jill), Jones, J. (Julia), Jones, F. A. (Faith A. M.), Kang, J. (Jungwon), Kartawijaya, T. (Tasrif), Keeley, E. C. (Erin C.), Kelt, D. A. (Douglas A.), Kinnear, R. (Rebecca), Klanderud, K. (Kari), Knutsen, H. (Halvor), Koenig, C. C. (Christopher C.), Kortz, A. R. (Alessandra R.), Kral, K. (Kamil), Kuhnz, L. A. (Linda A.), Kuo, C.-Y. (Chao-Yang), Kushner, D. J. (David J.), Laguionie-Marchais, C. (Claire), Lancaster, L. T. (Lesley T.), Min Lee, C. (Cheol), Lefcheck, J. S. (Jonathan S.), Levesque, E. (Esther), Lightfoot, D. (David), Lloret, F. (Francisco), Lloyd, J. D. (John D.), Lopez-Baucells, A. (Adria), Louzao, M. (Maite), Madin, J. S. (Joshua S.), Magnusson, B. (Borgpor), Malamud, S. (Shahar), Matthews, I. (Iain), McFarland, K. P. (Kent P.), McGill, B. (Brian), McKnight, D. (Diane), McLarney, W. O. (William O.), Meador, J. (Jason), Meserve, P. L. (Peter L.), Metcalfe, D. J. (Daniel J.), Meyer, C. F. (Christoph F. J.), Michelsen, A. (Anders), Milchakova, N. (Nataliya), Moens, T. (Tom), Moland, E. (Even), Moore, J. (Jon), Moreira, C. M. (Carolina Mathias), Mueller, J. (Joerg), Murphy, G. (Grace), Myers-Smith, I. H. (Isla H.), Myster, R. W. (Randall W.), Naumov, A. (Andrew), Neat, F. (Francis), Nelson, J. A. (James A.), Paul Nelson, M. (Michael), Newton, S. F. (Stephen F.), Norden, N. (Natalia), Oliver, J. C. (Jeffrey C.), Olsen, E. M. (Esben M.), Onipchenko, V. G. (Vladimir G.), Pabis, K. (Krzysztof), Pabst, R. J. (Robert J.), Paquette, A. (Alain), Pardede, S. (Sinta), Paterson, D. M. (David M.), Pelissier, R. (Raphael), Penuelas, J. (Josep), Perez-Matus, A. (Alejandro), Pizarro, O. (Oscar), Pomati, F. (Francesco), Post, E. (Eric), Prins, H. H. (Herbert H. T.), Priscu, J. C. (John C.), Provoost, P. (Pieter), Prudic, K. L. (Kathleen L.), Erkki, P. (Pulliainen), Ramesh, B. R. (B. R.), Mendivil Ramos, O. (Olivia), Rassweiler, A. (Andrew), Rebelo, J. E. (Jose Eduardo), Reed, D. C. (Daniel C.), Reich, P. B. (Peter B.), Remillard, S. M. (Suzanne M.), Richardson, A. J. (Anthony J.), Richardson, J. P. (J. Paul), van Rijn, I. (Itai), Rocha, R. (Ricardo), Rivera-Monroy, V. H. (Victor H.), Rixen, C. (Christian), Robinson, K. P. (Kevin P.), Rodrigues, R. R. (Ricardo Ribeiro), Rossa-Feres, D. d. (Denise de Cerqueira), Rudstam, L. (Lars), Ruhl, H. (Henry), Ruz, C. S. (Catalina S.), Sampaio, E. M. (Erica M.), Rybicki, N. (Nancy), Rypel, A. (Andrew), Sal, S. (Sofia), Salgado, B. (Beatriz), Santos, F. A. (Flavio A. M.), Savassi-Coutinho, A. P. (Ana Paula), Scanga, S. (Sara), Schmidt, J. (Jochen), Schooley, R. (Robert), Setiawan, F. (Fakhrizal), Shao, K.-T. (Kwang-Tsao), Shaver, G. R. (Gaius R.), Sherman, S. (Sally), Sherry, T. W. (Thomas W.), Sicinski, J. (Jacek), Sievers, C. (Caya), da Silva, A. C. (Ana Carolina), da Silva, F. R. (Fernando Rodrigues), Silveira, F. L. (Fabio L.), Slingsby, J. (Jasper), Smart, T. (Tracey), Snell, S. J. (Sara J.), Soudzilovskaia, N. A. (Nadejda A.), Souza, G. B. (Gabriel B. G.), Souza, F. M. (Flaviana Maluf), Souza, V. C. (Vinicius Castro), Stallings, C. D. (Christopher D.), Stanforth, R. (Rowan), Stanley, E. H. (Emily H.), Sterza, J. M. (Jose Mauro), Stevens, M. (Maarten), Stuart-Smith, R. (Rick), Rondon Suarez, Y. (Yzel), Supp, S. (Sarah), Yoshio Tamashiro, J. (Jorge), Tarigan, S. (Sukmaraharja), Thiede, G. P. (Gary P.), Thorn, S. (Simon), Tolvanen, A. (Anne), Zugliani Toniato, M. T. (Maria Teresa), Totland, O. (Orjan), Twilley, R. R. (Robert R.), Vaitkus, G. (Gediminas), Valdivia, N. (Nelson), Vallejo, M. I. (Martha Isabel), Valone, T. J. (Thomas J.), Van Colen, C. (Carl), Vanaverbeke, J. (Jan), Venturoli, F. (Fabio), Verheye, H. M. (Hans M.), Vianna, M. (Marcelo), Vieira, R. P. (Rui P.), Vrska, T. (Tomas), Vu, C. Q. (Con Quang), Vu, L. V. (Lien Van), Waide, R. B. (Robert B.), Waldock, C. (Conor), Watts, D. (Dave), Webb, S. (Sara), Wesolowski, T. (Tomasz), White, E. P. (Ethan P.), Widdicombe, C. E. (Claire E.), Wilgers, D. (Dustin), Williams, R. (Richard), Williams, S. B. (Stefan B.), Williamson, M. (Mark), Willig, M. R. (Michael R.), Willis, T. J. (Trevor J.), Wipf, S. (Sonja), Woods, K. D. (Kerry D.), Woehler, E. J. (Eric J.), Zawada, K. (Kyle), Zettler, M. L. (Michael L.), Dornelas, M. (Maria), Antao, L. H. (Laura H.), Moyes, F. (Faye), Bates, A. E. (Amanda E.), Magurran, A. E. (Anne E.), Adam, D. (Dusan), Akhmetzhanova, A. A. (Asem A.), Appeltans, W. (Ward), Arcos, J. M. (Jose Manuel), Arnold, H. (Haley), Ayyappan, N. (Narayanan), Badihi, G. (Gal), Baird, A. H. (Andrew H.), Barbosa, M. (Miguel), Barreto, T. E. (Tiago Egydio), Baessler, C. (Claus), Bellgrove, A. (Alecia), Belmaker, J. (Jonathan), Benedetti-Cecchi, L. (Lisandro), Bett, B. J. (Brian J.), Bjorkman, A. D. (Anne D.), Blazewicz, M. (Magdalena), Blowes, S. A. (Shane A.), Bloch, C. P. (Christopher P.), Bonebrake, T. C. (Timothy C.), Boyd, S. (Susan), Bradford, M. (Matt), Brooks, A. J. (Andrew J.), Brown, J. H. (James H.), Bruelheide, H. (Helge), Budy, P. (Phaedra), Carvalho, F. (Fernando), Castaneda-Moya, E. (Edward), Chen, C. A. (Chaolun Allen), Chamblee, J. F. (John F.), Chase, T. J. (Tory J.), Siegwart Collier, L. (Laura), Collinge, S. K. (Sharon K.), Condit, R. (Richard), Cooper, E. J. (Elisabeth J.), Cornelissen, J. H. (J. Hans C.), Cotano, U. (Unai), Crow, S. K. (Shannan Kyle), Damasceno, G. (Gabriella), Davies, C. H. (Claire H.), Davis, R. A. (Robert A.), Day, F. P. (Frank P.), Degraer, S. (Steven), Doherty, T. S. (Tim S.), Dunn, T. E. (Timothy E.), Durigan, G. (Giselda), Duffy, J. E. (J. Emmett), Edelist, D. (Dor), Edgar, G. J. (Graham J.), Elahi, R. (Robin), Elmendorf, S. C. (Sarah C.), Enemar, A. (Anders), Ernest, S. K. (S. K. Morgan), Escribano, R. (Ruben), Estiarte, M. (Marc), Evans, B. S. (Brian S.), Fan, T.-Y. (Tung-Yung), Farah, F. T. (Fabiano Turini), Fernandes, L. L. (Luiz Loureiro), Farneda, F. Z. (Fabio Z.), Fidelis, A. (Alessandra), Fitt, R. (Robert), Fosaa, A. M. (Anna Maria), Daher Correa Franco, G. A. (Geraldo Antonio), Frank, G. E. (Grace E.), Fraser, W. R. (William R.), Garcia, H. (Hernando), Gatti, R. C. (Roberto Cazzolla), Givan, O. (Or), Gorgone-Barbosa, E. (Elizabeth), Gould, W. A. (William A.), Gries, C. (Corinna), Grossman, G. D. (Gary D.), Gutierrez, J. R. (Julio R.), Hale, S. (Stephen), Harmon, M. E. (Mark E.), Harte, J. (John), Haskins, G. (Gary), Henshaw, D. L. (Donald L.), Hermanutz, L. (Luise), Hidalgo, P. (Pamela), Higuchi, P. (Pedro), Hoey, A. (Andrew), Van Hoey, G. (Gert), Hofgaard, A. (Annika), Holeck, K. (Kristen), Hollister, R. D. (Robert D.), Holmes, R. (Richard), Hoogenboom, M. (Mia), Hsieh, C.-h. (Chih-hao), Hubbell, S. P. (Stephen P.), Huettmann, F. (Falk), Huffard, C. L. (Christine L.), Hurlbert, A. H. (Allen H.), Ivanauskas, N. M. (Natalia Macedo), Janik, D. (David), Jandt, U. (Ute), Jazdzewska, A. (Anna), Johannessen, T. (Tore), Johnstone, J. (Jill), Jones, J. (Julia), Jones, F. A. (Faith A. M.), Kang, J. (Jungwon), Kartawijaya, T. (Tasrif), Keeley, E. C. (Erin C.), Kelt, D. A. (Douglas A.), Kinnear, R. (Rebecca), Klanderud, K. (Kari), Knutsen, H. (Halvor), Koenig, C. C. (Christopher C.), Kortz, A. R. (Alessandra R.), Kral, K. (Kamil), Kuhnz, L. A. (Linda A.), Kuo, C.-Y. (Chao-Yang), Kushner, D. J. (David J.), Laguionie-Marchais, C. (Claire), Lancaster, L. T. (Lesley T.), Min Lee, C. (Cheol), Lefcheck, J. S. (Jonathan S.), Levesque, E. (Esther), Lightfoot, D. (David), Lloret, F. (Francisco), Lloyd, J. D. (John D.), Lopez-Baucells, A. (Adria), Louzao, M. (Maite), Madin, J. S. (Joshua S.), Magnusson, B. (Borgpor), Malamud, S. (Shahar), Matthews, I. (Iain), McFarland, K. P. (Kent P.), McGill, B. (Brian), McKnight, D. (Diane), McLarney, W. O. (William O.), Meador, J. (Jason), Meserve, P. L. (Peter L.), Metcalfe, D. J. (Daniel J.), Meyer, C. F. (Christoph F. J.), Michelsen, A. (Anders), Milchakova, N. (Nataliya), Moens, T. (Tom), Moland, E. (Even), Moore, J. (Jon), Moreira, C. M. (Carolina Mathias), Mueller, J. (Joerg), Murphy, G. (Grace), Myers-Smith, I. H. (Isla H.), Myster, R. W. (Randall W.), Naumov, A. (Andrew), Neat, F. (Francis), Nelson, J. A. (James A.), Paul Nelson, M. (Michael), Newton, S. F. (Stephen F.), Norden, N. (Natalia), Oliver, J. C. (Jeffrey C.), Olsen, E. M. (Esben M.), Onipchenko, V. G. (Vladimir G.), Pabis, K. (Krzysztof), Pabst, R. J. (Robert J.), Paquette, A. (Alain), Pardede, S. (Sinta), Paterson, D. M. (David M.), Pelissier, R. (Raphael), Penuelas, J. (Josep), Perez-Matus, A. (Alejandro), Pizarro, O. (Oscar), Pomati, F. (Francesco), Post, E. (Eric), Prins, H. H. (Herbert H. T.), Priscu, J. C. (John C.), Provoost, P. (Pieter), Prudic, K. L. (Kathleen L.), Erkki, P. (Pulliainen), Ramesh, B. R. (B. R.), Mendivil Ramos, O. (Olivia), Rassweiler, A. (Andrew), Rebelo, J. E. (Jose Eduardo), Reed, D. C. (Daniel C.), Reich, P. B. (Peter B.), Remillard, S. M. (Suzanne M.), Richardson, A. J. (Anthony J.), Richardson, J. P. (J. Paul), van Rijn, I. (Itai), Rocha, R. (Ricardo), Rivera-Monroy, V. H. (Victor H.), Rixen, C. (Christian), Robinson, K. P. (Kevin P.), Rodrigues, R. R. (Ricardo Ribeiro), Rossa-Feres, D. d. (Denise de Cerqueira), Rudstam, L. (Lars), Ruhl, H. (Henry), Ruz, C. S. (Catalina S.), Sampaio, E. M. (Erica M.), Rybicki, N. (Nancy), Rypel, A. (Andrew), Sal, S. (Sofia), Salgado, B. (Beatriz), Santos, F. A. (Flavio A. M.), Savassi-Coutinho, A. P. (Ana Paula), Scanga, S. (Sara), Schmidt, J. (Jochen), Schooley, R. (Robert), Setiawan, F. (Fakhrizal), Shao, K.-T. (Kwang-Tsao), Shaver, G. R. (Gaius R.), Sherman, S. (Sally), Sherry, T. W. (Thomas W.), Sicinski, J. (Jacek), Sievers, C. (Caya), da Silva, A. C. (Ana Carolina), da Silva, F. R. (Fernando Rodrigues), Silveira, F. L. (Fabio L.), Slingsby, J. (Jasper), Smart, T. (Tracey), Snell, S. J. (Sara J.), Soudzilovskaia, N. A. (Nadejda A.), Souza, G. B. (Gabriel B. G.), Souza, F. M. (Flaviana Maluf), Souza, V. C. (Vinicius Castro), Stallings, C. D. (Christopher D.), Stanforth, R. (Rowan), Stanley, E. H. (Emily H.), Sterza, J. M. (Jose Mauro), Stevens, M. (Maarten), Stuart-Smith, R. (Rick), Rondon Suarez, Y. (Yzel), Supp, S. (Sarah), Yoshio Tamashiro, J. (Jorge), Tarigan, S. (Sukmaraharja), Thiede, G. P. (Gary P.), Thorn, S. (Simon), Tolvanen, A. (Anne), Zugliani Toniato, M. T. (Maria Teresa), Totland, O. (Orjan), Twilley, R. R. (Robert R.), Vaitkus, G. (Gediminas), Valdivia, N. (Nelson), Vallejo, M. I. (Martha Isabel), Valone, T. J. (Thomas J.), Van Colen, C. (Carl), Vanaverbeke, J. (Jan), Venturoli, F. (Fabio), Verheye, H. M. (Hans M.), Vianna, M. (Marcelo), Vieira, R. P. (Rui P.), Vrska, T. (Tomas), Vu, C. Q. (Con Quang), Vu, L. V. (Lien Van), Waide, R. B. (Robert B.), Waldock, C. (Conor), Watts, D. (Dave), Webb, S. (Sara), Wesolowski, T. (Tomasz), White, E. P. (Ethan P.), Widdicombe, C. E. (Claire E.), Wilgers, D. (Dustin), Williams, R. (Richard), Williams, S. B. (Stefan B.), Williamson, M. (Mark), Willig, M. R. (Michael R.), Willis, T. J. (Trevor J.), Wipf, S. (Sonja), Woods, K. D. (Kerry D.), Woehler, E. J. (Eric J.), Zawada, K. (Kyle), and Zettler, M. L. (Michael L.)

Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km² (158 cm²) to 100 km² (1,000,000,000,000 cm²). Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates. Software format: .csv and .SQL.

Published
2018

15. BioTIME: A database of biodiversity time series for the Anthropocene

Author

Dornelas, M., Antão, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., Akhmetzhanova, A. A., Appeltans, W., Arcos, J. M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A. H., Barbosa, M., Barreto, T. E., Bässler, C., Bellgrove, A., Belmaker, J., Benedetti-Cecchi, L., Bett, B. J., Bjorkman, A. D., Błażewicz, M., Blowes, S. A., Bloch, C. P., Bonebrake, T. C., Boyd, S., Bradford, M., Brooks, A. J., Brown, J. H., Bruelheide, H., Budy, P., Carvalho, F., Castañeda-Moya, E., Chen, C. A., Chamblee, J. F., Chase, T. J., Siegwart Collier, L., Collinge, S. K., Condit, R., Cooper, E. J., Cornelissen, J. H. C., Cotano, U., Kyle Crow, S., Damasceno, G., Davies, C. H., Davis, R. A., Day, F. P., Degraer, S., Doherty, T. S., Dunn, T. E., Durigan, G., Duffy, J. E., Edelist, D., Edgar, G. J., Elahi, R., Elmendorf, S. C., Enemar, A., Ernest, S. K. M., Escribano, R., Estiarte, M., Evans, B. S., Fan, T. Y., Turini Farah, F., Loureiro Fernandes, L., Farneda, F. Z., Fidelis, A., Fitt, R., Fosaa, A. M., Daher Correa Franco, G. A., Frank, G. E., Fraser, W. R., García, H., Cazzolla Gatti, R., Givan, O., Gorgone-Barbosa, E., Gould, W. A., Gries, C., Grossman, G. D., Gutierréz, J. R., Hale, S., Harmon, M. E., Harte, J., Haskins, G., Henshaw, D. L., Hermanutz, L., Hidalgo, P., Higuchi, P., Hoey, A., Van Hoey, G., Hofgaard, A., Holeck, K., Hollister, R. D., Holmes, R., Hoogenboom, M., Hsieh, C. H., Hubbell, S. P., Huettmann, F., Huffard, C. L., Hurlbert, A. H., Macedo Ivanauskas, N., Janík, D., Jandt, U., Jażdżewska, A., Johannessen, T., Johnstone, J., Jones, J., Jones, F. A. M., Kang, J., Kartawijaya, T., Keeley, E. C., Kelt, D. A., Kinnear, R., Klanderud, K., Knutsen, H., Koenig, C. C., Kortz, A. R., Král, K., Kuhnz, L. A., Kuo, C. Y., Kushner, D. J., Laguionie-Marchais, C., Lancaster, L. T., Min Lee, C., Lefcheck, J. S., Lévesque, E., Lightfoot, D., Lloret, F., Lloyd, J. D., López-Baucells, A., Louzao, M., Madin, J. S., Magnússon, B., Malamud, S., Matthews, I., McFarland, K. P., McGill, B., McKnight, D., McLarney, W. O., Meador, J., Meserve, P. L., Metcalfe, D. J., Meyer, C. F. J., Michelsen, A., Milchakova, N., Moens, T., Moland, E., Moore, J., Mathias Moreira, C., Müller, J., Murphy, G., Myers-Smith, I. H., Myster, R. W., Naumov, A., Neat, F., Nelson, J. A., Paul Nelson, M., Newton, S. F., Norden, N., Oliver, J. C., Olsen, E. M., Onipchenko, V. G., Pabis, K., Pabst, R. J., Paquette, A., Pardede, S., Paterson, D. M., Pélissier, R., Peñuelas, J., Pérez-Matus, A., Pizarro, O., Pomati, F., Post, E., Prins, H. H. T., Priscu, J. C., Provoost, P., Prudic, K. L., Pulliainen, E., Ramesh, B. R., Mendivil Ramos, O., Rassweiler, A., Rebelo, J. E., Reed, D. C., Reich, P. B., Remillard, S. M., Richardson, A. J., Richardson, J. P., van Rijn, I., Rocha, R., Rivera-Monroy, V. H., Rixen, C., Robinson, K. P., Ribeiro Rodrigues, R., de Cerqueira Rossa-Feres, D., Rudstam, L., Ruhl, H., Ruz, C. S., Sampaio, E. M., Rybicki, N., Rypel, A., Sal, S., Salgado, B., Santos, F. A. M., Savassi-Coutinho, A. P., Scanga, S., Schmidt, J., Schooley, R., Setiawan, F., Shao, K. T., Shaver, G. R., Sherman, S., Sherry, T. W., Siciński, J., Sievers, C., da Silva, A. C., Rodrigues da Silva, F., Silveira, F. L., Slingsby, J., Smart, T., Snell, S. J., Soudzilovskaia, N. A., Souza, G. B. G., Maluf Souza, F., Castro Souza, V., Stallings, C. D., Stanforth, R., Stanley, E. H., Mauro Sterza, J., Stevens, M., Stuart-Smith, R., Rondon Suarez, Y., Supp, S., Yoshio Tamashiro, J., Tarigan, S., Thiede, G. P., Thorn, S., Tolvanen, A., Teresa Zugliani Toniato, M., Totland, Ø, Twilley, R. R., Vaitkus, G., Valdivia, N., Vallejo, M. I., Valone, T. J., Van Colen, C., Vanaverbeke, J., Venturoli, F., Verheye, H. M., Vianna, M., Vieira, R. P., Vrška, T., Quang Vu, C., Van Vu, L., Waide, R. B., Waldock, C., Watts, D., Webb, S., Wesołowski, T., White, E. P., Widdicombe, C. E., Wilgers, D., Williams, R., Williams, S. B., Williamson, M., Willig, M. R., Willis, T. J., Wipf, S., Woods, K. D., Woehler, E. J., Zawada, K., Zettler, M. L., Dornelas, M., Antão, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., Akhmetzhanova, A. A., Appeltans, W., Arcos, J. M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A. H., Barbosa, M., Barreto, T. E., Bässler, C., Bellgrove, A., Belmaker, J., Benedetti-Cecchi, L., Bett, B. J., Bjorkman, A. D., Błażewicz, M., Blowes, S. A., Bloch, C. P., Bonebrake, T. C., Boyd, S., Bradford, M., Brooks, A. J., Brown, J. H., Bruelheide, H., Budy, P., Carvalho, F., Castañeda-Moya, E., Chen, C. A., Chamblee, J. F., Chase, T. J., Siegwart Collier, L., Collinge, S. K., Condit, R., Cooper, E. J., Cornelissen, J. H. C., Cotano, U., Kyle Crow, S., Damasceno, G., Davies, C. H., Davis, R. A., Day, F. P., Degraer, S., Doherty, T. S., Dunn, T. E., Durigan, G., Duffy, J. E., Edelist, D., Edgar, G. J., Elahi, R., Elmendorf, S. C., Enemar, A., Ernest, S. K. M., Escribano, R., Estiarte, M., Evans, B. S., Fan, T. Y., Turini Farah, F., Loureiro Fernandes, L., Farneda, F. Z., Fidelis, A., Fitt, R., Fosaa, A. M., Daher Correa Franco, G. A., Frank, G. E., Fraser, W. R., García, H., Cazzolla Gatti, R., Givan, O., Gorgone-Barbosa, E., Gould, W. A., Gries, C., Grossman, G. D., Gutierréz, J. R., Hale, S., Harmon, M. E., Harte, J., Haskins, G., Henshaw, D. L., Hermanutz, L., Hidalgo, P., Higuchi, P., Hoey, A., Van Hoey, G., Hofgaard, A., Holeck, K., Hollister, R. D., Holmes, R., Hoogenboom, M., Hsieh, C. H., Hubbell, S. P., Huettmann, F., Huffard, C. L., Hurlbert, A. H., Macedo Ivanauskas, N., Janík, D., Jandt, U., Jażdżewska, A., Johannessen, T., Johnstone, J., Jones, J., Jones, F. A. M., Kang, J., Kartawijaya, T., Keeley, E. C., Kelt, D. A., Kinnear, R., Klanderud, K., Knutsen, H., Koenig, C. C., Kortz, A. R., Král, K., Kuhnz, L. A., Kuo, C. Y., Kushner, D. J., Laguionie-Marchais, C., Lancaster, L. T., Min Lee, C., Lefcheck, J. S., Lévesque, E., Lightfoot, D., Lloret, F., Lloyd, J. D., López-Baucells, A., Louzao, M., Madin, J. S., Magnússon, B., Malamud, S., Matthews, I., McFarland, K. P., McGill, B., McKnight, D., McLarney, W. O., Meador, J., Meserve, P. L., Metcalfe, D. J., Meyer, C. F. J., Michelsen, A., Milchakova, N., Moens, T., Moland, E., Moore, J., Mathias Moreira, C., Müller, J., Murphy, G., Myers-Smith, I. H., Myster, R. W., Naumov, A., Neat, F., Nelson, J. A., Paul Nelson, M., Newton, S. F., Norden, N., Oliver, J. C., Olsen, E. M., Onipchenko, V. G., Pabis, K., Pabst, R. J., Paquette, A., Pardede, S., Paterson, D. M., Pélissier, R., Peñuelas, J., Pérez-Matus, A., Pizarro, O., Pomati, F., Post, E., Prins, H. H. T., Priscu, J. C., Provoost, P., Prudic, K. L., Pulliainen, E., Ramesh, B. R., Mendivil Ramos, O., Rassweiler, A., Rebelo, J. E., Reed, D. C., Reich, P. B., Remillard, S. M., Richardson, A. J., Richardson, J. P., van Rijn, I., Rocha, R., Rivera-Monroy, V. H., Rixen, C., Robinson, K. P., Ribeiro Rodrigues, R., de Cerqueira Rossa-Feres, D., Rudstam, L., Ruhl, H., Ruz, C. S., Sampaio, E. M., Rybicki, N., Rypel, A., Sal, S., Salgado, B., Santos, F. A. M., Savassi-Coutinho, A. P., Scanga, S., Schmidt, J., Schooley, R., Setiawan, F., Shao, K. T., Shaver, G. R., Sherman, S., Sherry, T. W., Siciński, J., Sievers, C., da Silva, A. C., Rodrigues da Silva, F., Silveira, F. L., Slingsby, J., Smart, T., Snell, S. J., Soudzilovskaia, N. A., Souza, G. B. G., Maluf Souza, F., Castro Souza, V., Stallings, C. D., Stanforth, R., Stanley, E. H., Mauro Sterza, J., Stevens, M., Stuart-Smith, R., Rondon Suarez, Y., Supp, S., Yoshio Tamashiro, J., Tarigan, S., Thiede, G. P., Thorn, S., Tolvanen, A., Teresa Zugliani Toniato, M., Totland, Ø, Twilley, R. R., Vaitkus, G., Valdivia, N., Vallejo, M. I., Valone, T. J., Van Colen, C., Vanaverbeke, J., Venturoli, F., Verheye, H. M., Vianna, M., Vieira, R. P., Vrška, T., Quang Vu, C., Van Vu, L., Waide, R. B., Waldock, C., Watts, D., Webb, S., Wesołowski, T., White, E. P., Widdicombe, C. E., Wilgers, D., Williams, R., Williams, S. B., Williamson, M., Willig, M. R., Willis, T. J., Wipf, S., Woods, K. D., Woehler, E. J., Zawada, K., and Zettler, M. L.

Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2). Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates. Software format:.csv and.SQL.

Published
2018

17. Bacteriophage Treatment in a Lung Transplant Recipient

Author

Aslam, S., primary, Yung, G., additional, Dan, J., additional, Reed, S., additional, LeFebvre, M., additional, Logan, C., additional, Taplitz, R., additional, Law, N., additional, Golts, E., additional, Afshar, K., additional, Lehman, S., additional, Morales, S., additional, Furr, C., additional, Rosas, F., additional, Gaidamaka, A., additional, Bilinsky, I., additional, Grint, P., additional, Biswas, B., additional, Duplessis, C., additional, Hamilton, T., additional, and Schooley, R., additional

Published
2018
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28. Nevirapine- versus lopinavir/ritonavir-based initial therapy for HIV-1 infection among women in africa: A randomized trial

Author

Lockman, S, Hughes, M, Sawe, F, Zheng, Y, McIntyre, J, Chipato, T, Asmelash, A, Rassool, M, Kimaiyo, S, Shaffer, D, Hosseinipour, M, Mohapi, L, Ssali, F, Chibowa, M, Amod, F, Halvas, E, Hogg, E, Alston-Smith, B, Smith, L, Schooley, R, Mellors, J, Currier, J, Lockman, S, Hughes, M, Sawe, F, Zheng, Y, McIntyre, J, Chipato, T, Asmelash, A, Rassool, M, Kimaiyo, S, Shaffer, D, Hosseinipour, M, Mohapi, L, Ssali, F, Chibowa, M, Amod, F, Halvas, E, Hogg, E, Alston-Smith, B, Smith, L, Schooley, R, Mellors, J, and Currier, J

Abstract

Background: Nevirapine (NVP) is widely used in antiretroviral treatment (ART) of HIV-1 globally. The primary objective of the AA5208/OCTANE trial was to compare the efficacy of NVP-based versus lopinavir/ritonavir (LPV/r)-based initial ART. Methods and Findings: In seven African countries (Botswana, Kenya, Malawi, South Africa, Uganda, Zambia, and Zimbabwe), 500 antiretroviral-naïve HIV-infected women with CD4<200 cells/mm3 were enrolled into a two-arm randomized trial to initiate open-label ART with tenofovir (TDF)/emtricitabine (FTC) once/day plus either NVP (n = 249) or LPV/r (n = 251) twice/day, and followed for ≥48 weeks. The primary endpoint was time from randomization to death or confirmed virologic failure ([VF]) (plasma HIV RNA<1 log10 below baseline 12 weeks after treatment initiation, or ≥400 copies/ml at or after 24 weeks), with comparison between treatments based on hazard ratios (HRs) in intention-to-treat analysis. Equivalence of randomized treatments was defined as finding the 95% CI for HR for virological failure or death in the range 0.5 to 2.0. Baseline characteristics were (median): age = 34 years, CD4 = 121 cells/mm3, HIV RNA = 5.2 log10copies/ml. Median follow-up = 118 weeks; 29 (6%) women were lost to follow-up. 42 women (37 VFs, five deaths; 17%) in the NVP and 50 (43 VFs, seven deaths; 20%) in the LPV/r arm reached the primary endpoint (HR 0.85, 95% CI 0.56-1.29). During initial assigned treatment, 14% and 16% of women receiving NVP and LPV/r experienced grade 3/4 signs/symptoms and 26% and 22% experienced grade 3/4 laboratory abnormalities. However, 35 (14%) women discontinued NVP because of adverse events, most in the first 8 weeks, versus none for LPV/r (p<0.001). VF, death, or permanent treatment discontinuation occurred in 80 (32%) of NVP and 54 (22%) of LPV/r arms (HR = 1.7, 95% CI 1.2-2.4), with the difference primarily due to more treatment discontinuation in the NVP arm. 13 (45%) of 29 women tested in the NVP versus six (15%) of 40

Published
2012

29. Zidovudine, didanosine, and zalcitabine in the treatment of HIV infection: meta-analyses of the randomised evidence. HIV Trialists' Collaborative Group

Author

Abrams, D, Allan, D, Antunes, F, Breckenridge, A, Bruun, J, Cameron, W, Carbon, C, Chalmers, I, Chang, H, Chodakewitz, J, Clendenin, N, Clumeck, N, Collier, A, Collins, G, Cooper, E, Cooper, D, Danner, S, D'Aquila, R, DeGruttola, V, DeMasi, R, Dee, L, Deyton, L, Dixon, D, Farthing, C, Feinberg, J, Fischl, M, Flepp, M, Gartland, M, Gatell, J, Gazzard, B, Goebel, F, Gotzsche, P, Gringeri, A, Hall, D, Hamilton, J, Hammer, S, Hartigan, P, Heath-Chiozzi, M, Henry, K, Hill, A, Hirschel, B, Ioannidis, J, Kahn, J, Katlama, C, Katzenstein, D, Killen, J, King, E, de Loes, SK, Kravcik, S, Lange, J, Leavitt, R, Leonard, J, Maeland, A, Mannucci, P, Mathiesen, L, McDade, H, Meibohn, A, Melander, H, Merigan, T, Mulder, J, Myers, M, Neaton, J, Nessling, M, Perrin, L, Pettinelli, C, Phair, J, Phillips, A, Pinching, A, Poppa, A, Power, L, Reiss, P, Richman, D, Rooney, J, Rousseau, F, Rutherford, G, Salgo, M, Sandstrom, E, Saravolatz, L, Savidge, G, Schnittman, S, Schooley, R, Seligmann, M, Simberkoff, M, Skowron, G, Slade, P, Smith, D, Smith, RP, Soriano, V, Stanley, K, Stingl, G, Stoffels, P, Struthers, L, Tierney, C, Thompson, M, Van der Broeck, R, Van Leeuven, R, Van Weverling, G, Veenstra, J, Vella, S, Volberding, P, Weber, J, Winslow, D, Yeni, P, Yeo, J, Dormont, J, Sande, M, Weller, I, Babiker, A, Collins, R, Darbyshire, J, Duncan, W, Foulkes, M, Hughes, M, Peto, R, Peto, T, Walker, S, and Grp, HIVTC

Abstract

BACKGROUND: To assess the effects of zidovudine, didanosine, and zalcitabine on HIV disease progression and survival, we undertook meta-analyses of individual patient data and tabular data from all randomised trials that compared these agents. METHODS: Individual patient data were available for 7722 participants without AIDS in the nine randomised trials of immediate versus deferred zidovudine, and 7700 participants with or without AIDS in the six trials comparing zidovudine plus didanosine, zidovudine plus zalcitabine, or zidovudine alone. The main outcomes were mortality and disease progression (new AIDS-defining event or death before any such event). FINDINGS: In the comparison of immediate versus deferred zidovudine, during a median follow-up of 50 months, 1908 individuals progressed, of whom 1351 died. In the deferred group, 61% started antiretroviral therapy (median time to therapy 28 months, which was zidovudine monotherapy in 94%). During the first year of follow-up, immediate zidovudine halved the rate of disease progression (p

Published
1999

36. A Plea for Justice for Jailed Medical Workers

Author

Ahuja, S. K., primary, Aiuti, F., additional, Berkhout, B., additional, Biberfeld, P., additional, Burton, D. R., additional, Colizzi, V., additional, Deeks, S. G., additional, Desrosiers, R. C., additional, Dierich, M. P., additional, Doms, R. W., additional, Emerman, M., additional, Gallo, R. C., additional, Girard, M., additional, Greene, W. C., additional, Hoxie, J. A., additional, Hunter, E., additional, Klein, G., additional, Korber, B., additional, Kuritzkes, D. R., additional, Lederman, M. M., additional, Malim, M. H., additional, Marx, P. A., additional, McCune, J. M., additional, McMichael, A., additional, Miller, C., additional, Miller, V., additional, Montagnier, L., additional, Montefiori, D. C., additional, Moore, J. P., additional, Nixon, D. F., additional, Overbaugh, J., additional, Pauza, C. D., additional, Richman, D. D., additional, Saag, M. S., additional, Sattentau, Q., additional, Schooley, R. T., additional, Shattock, R., additional, Shaw, G. M., additional, Stevenson, M., additional, Trkola, A., additional, Wainberg, M. A., additional, Weiss, R. A., additional, Wolinsky, S., additional, and Zack, J. A., additional

Published
2006
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38. Human immunodeficiency virus type 1 drug susceptibility during zidovudine (AZT) monotherapy compared with AZT plus 2',3'-dideoxyinosine or AZT plus 2',3'-dideoxycytidine combination therapy. The protocol 34,225-02 Collaborative Group

Author

Larder, B A, primary, Kohli, A, additional, Bloor, S, additional, Kemp, S D, additional, Harrigan, P R, additional, Schooley, R T, additional, Lange, J M, additional, Pennington, K N, additional, and St Clair, M H, additional

Published
1996
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48. Lack of Effect of Peroral Acyclovir for the Treatment of Acute Infectious Mononucleosis

Author

van der Horst, C., primary, Joncas, J., additional, Ahronheim, G., additional, Gustafson, N., additional, Stein, G., additional, Gurwith, M., additional, Fleisher, G., additional, Sullivan, J., additional, Sixbey, J., additional, Roland, S., additional, Fryer, J., additional, Champney, K., additional, Schooley, R., additional, Sumaya, C., additional, and Pagano, J. S., additional

Published
1991
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50. Antiretroviral therapy in adults: updated recommendations of the International AIDS Society-USA Panel.

Author

Carpenter, C C, Cooper, D A, Fischl, M A, Gatell, J M, Gazzard, B G, Hammer, S M, Hirsch, M S, Jacobsen, D M, Katzenstein, D A, Montaner, J S, Richman, D D, Saag, M S, Schechter, M, Schooley, R T, Thompson, M A, Vella, S, Yeni, P G, and Volberding, P A

Abstract

Objective: To update recommendations for antiretroviral therapy for adult human immunodeficiency virus type 1 (HIV-1) infection, based on new information and drugs that are available.Participants: A 17-member international physician panel with antiretroviral research and HIV patient care experience initially convened by the International AIDS Society-USA in December 1995.Evidence: Available clinical and basic science data including phase 3 controlled trials; data on clinical, virologic, and immunologic end points; research conference reports; HIV pathogenesis data; and panel expert opinion. Recommendations were limited to therapies available (US Food and Drug Administration approved) in 1999.Consensus Process: The panel assesses new research reports and interim results and regularly meets to consider how the new data affect therapy recommendations. Recommendations are updated via full-panel consensus. Guidelines are presented as recommendations if the supporting evidence warrants routine use in the particular situation and as considerations if data are preliminary or incomplete but suggestive.Conclusions: The availability of new antiretroviral drugs has expanded treatment choices. The importance of adherence, emerging long-term complications of therapy, recognition and management of antiretroviral failure, and new monitoring tools are addressed. Optimal care requires individualized management and ongoing attention to relevant scientific and clinical information in the field. [ABSTRACT FROM AUTHOR]

Published
2000
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