412 results on '"Scheibye-Knudsen, Morten"'
Search Results
2. Metabolic reprogramming by Acly inhibition using SB-204990 alters glucoregulation and modulates molecular mechanisms associated with aging
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Sola-García, Alejandro, Cáliz-Molina, María Ángeles, Espadas, Isabel, Petr, Michael, Panadero-Morón, Concepción, González-Morán, Daniel, Martín-Vázquez, María Eugenia, Narbona-Pérez, Álvaro Jesús, López-Noriega, Livia, Martínez-Corrales, Guillermo, López-Fernández-Sobrino, Raúl, Carmona-Marin, Lina M., Martínez-Force, Enrique, Yanes, Oscar, Vinaixa, Maria, López-López, Daniel, Reyes, José Carlos, Dopazo, Joaquín, Martín, Franz, Gauthier, Benoit R., Scheibye-Knudsen, Morten, Capilla-González, Vivian, and Martín-Montalvo, Alejandro
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- 2023
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3. Spatial mapping of cellular senescence: emerging challenges and opportunities
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Gurkar, Aditi U., Gerencser, Akos A., Mora, Ana L., Nelson, Andrew C., Zhang, Anru R., Lagnado, Anthony B., Enninful, Archibald, Benz, Christopher, Furman, David, Beaulieu, Delphine, Jurk, Diana, Thompson, Elizabeth L., Wu, Fei, Rodriguez, Fernanda, Barthel, Grant, Chen, Hao, Phatnani, Hemali, Heckenbach, Indra, Chuang, Jeffrey H., Horrell, Jeremy, Petrescu, Joana, Alder, Jonathan K., Lee, Jun Hee, Niedernhofer, Laura J., Kumar, Manoj, Königshoff, Melanie, Bueno, Marta, Sokka, Miiko, Scheibye-Knudsen, Morten, Neretti, Nicola, Eickelberg, Oliver, Adams, Peter D., Hu, Qianjiang, Zhu, Quan, Porritt, Rebecca A., Dong, Runze, Peters, Samuel, Victorelli, Stella, Pengo, Thomas, Khaliullin, Timur, Suryadevara, Vidyani, Fu, Xiaonan, Bar-Joseph, Ziv, Ji, Zhicheng, and Passos, João F.
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- 2023
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4. Pharmacological interventions in human aging
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Petr, Michael Angelo, Matiyevskaya, Frida, Osborne, Brenna, Berglind, Magnus, Reves, Simon, Zhang, Bin, Ezra, Michael Ben, Carmona-Marin, Lina Maria, Syadzha, Muhammad Farraz, Mediavilla, Marta Cortés, Keijzers, Guido, Bakula, Daniela, Mkrtchyan, Garik V, and Scheibye-Knudsen, Morten
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- 2024
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5. Meeting Report: Aging Research and Drug Discovery
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Meron, Esther, Thaysen, Maria, Angeli, Suzanne, Antebi, Adam, Barzilai, Nir, Baur, Joseph A, Bekker-Jensen, Simon, Birkisdottir, Maria, Bischof, Evelyne, Bruening, Jens, Brunet, Anne, Buchwalter, Abigail, Cabreiro, Filipe, Cai, Shiqing, Chen, Brian H, Ermolaeva, Maria, Ewald, Collin Y, Ferrucci, Luigi, Florian, Maria Carolina, Fortney, Kristen, Freund, Adam, Georgievskaya, Anastasia, Gladyshev, Vadim N, Glass, David, Golato, Tyler, Gorbunova, Vera, Hoejimakers, Jan, Houtkooper, Riekelt H, Jager, Sibylle, Jaksch, Frank, Janssens, Georges, Jensen, Martin Borch, Kaeberlein, Matt, Karsenty, Gerard, de Keizer, Peter, Kennedy, Brian, Kirkland, James L, Kjaer, Michael, Kroemer, Guido, Lee, Kai-Fu, Lemaitre, Jean-Marc, Liaskos, David, Longo, Valter D, Lu, Yu-Xuan, MacArthur, Michael R, Maier, Andrea B, Manakanatas, Christina, Mitchell, Sarah J, Moskalev, Alexey, Niedernhofer, Laura, Ozerov, Ivan, Partridge, Linda, Passegué, Emmanuelle, Petr, Michael A, Peyer, James, Radenkovic, Dina, Rando, Thomas A, Rattan, Suresh, Riedel, Christian G, Rudolph, Lenhard, Ai, Ruixue, Serrano, Manuel, Schumacher, Björn, Sinclair, David A, Smith, Ryan, Suh, Yousin, Taub, Pam, Trapp, Alexandre, Trendelenburg, Anne-Ulrike, Valenzano, Dario Riccardo, Verburgh, Kris, Verdin, Eric, Vijg, Jan, Westendorp, Rudi GJ, Zonari, Alessandra, Bakula, Daniela, Zhavoronkov, Alex, and Scheibye-Knudsen, Morten
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Aging ,aging ,drug discovery ,conference ,AI ,longevity ,Biochemistry and Cell Biology ,Physiology ,Oncology and Carcinogenesis ,Developmental Biology - Abstract
Aging is the single largest risk factor for most chronic diseases, and thus possesses large socioeconomic interest to continuously aging societies. Consequently, the field of aging research is expanding alongside a growing focus from the industry and investors in aging research. This year's 8th Annual Aging Research and Drug Discovery (ARDD) meeting was organized as a hybrid meeting from August 30th to September 3rd 2021 with more than 130 attendees participating on-site at the Ceremonial Hall at University of Copenhagen, Denmark, and 1800 engaging online. The conference comprised of presentations from 75 speakers focusing on new research in topics including mechanisms of aging and how these can be modulated as well as the use of AI and new standards of practices within aging research. This year, a longevity workshop was included to build stronger connections with the clinical community.
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- 2022
6. CD38 regulates ovarian function and fecundity via NAD+ metabolism
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Perrone, Rosalba, Ashok Kumaar, Prasanna Vadhana, Haky, Lauren, Hahn, Cosmo, Riley, Rebeccah, Balough, Julia, Zaza, Giuliana, Soygur, Bikem, Hung, Kaitlyn, Prado, Leandro, Kasler, Herbert G., Tiwari, Ritesh, Matsui, Hiroyuki, Hormazabal, Genesis Vega, Heckenbach, Indra, Scheibye-Knudsen, Morten, Duncan, Francesca E., and Verdin, Eric
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- 2023
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7. ARDD 2020: from aging mechanisms to interventions
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Mkrtchyan, Garik V, Abdelmohsen, Kotb, Andreux, Pénélope, Bagdonaite, Ieva, Barzilai, Nir, Brunak, Søren, Cabreiro, Filipe, de Cabo, Rafael, Campisi, Judith, Cuervo, Ana Maria, Demaria, Marco, Ewald, Collin Y, Fang, Evandro Fei, Faragher, Richard, Ferrucci, Luigi, Freund, Adam, Silva-García, Carlos G, Georgievskaya, Anastasia, Gladyshev, Vadim N, Glass, David J, Gorbunova, Vera, de Grey, Aubrey, He, Wei-Wu, Hoeijmakers, Jan, Hoffmann, Eva, Horvath, Steve, Houtkooper, Riekelt H, Jensen, Majken K, Jensen, Martin Borch, Kane, Alice, Kassem, Moustapha, de Keizer, Peter, Kennedy, Brian, Karsenty, Gerard, Lamming, Dudley W, Lee, Kai-Fu, MacAulay, Nanna, Mamoshina, Polina, Mellon, Jim, Molenaars, Marte, Moskalev, Alexey, Mund, Andreas, Niedernhofer, Laura, Osborne, Brenna, Pak, Heidi H, Parkhitko, Andrey, Raimundo, Nuno, Rando, Thomas A, Rasmussen, Lene Juel, Reis, Carolina, Riedel, Christian G, Franco-Romero, Anais, Schumacher, Björn, Sinclair, David A, Suh, Yousin, Taub, Pam R, Toiber, Debra, Treebak, Jonas T, Valenzano, Dario Riccardo, Verdin, Eric, Vijg, Jan, Young, Sergey, Zhang, Lei, Bakula, Daniela, Zhavoronkov, Alex, and Scheibye-Knudsen, Morten
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Biochemistry and Cell Biology ,Biomedical and Clinical Sciences ,Clinical Sciences ,Biological Sciences ,Aging ,Prevention ,Good Health and Well Being ,Artificial Intelligence ,Biomedical Research ,Cellular Senescence ,Congresses as Topic ,Drug Discovery ,Humans ,Life Style ,Longevity ,Pharmaceutical Preparations ,aging ,interventions ,drug discovery ,artificial intelligence ,Physiology ,Oncology and Carcinogenesis ,Developmental Biology - Abstract
Aging is emerging as a druggable target with growing interest from academia, industry and investors. New technologies such as artificial intelligence and advanced screening techniques, as well as a strong influence from the industry sector may lead to novel discoveries to treat age-related diseases. The present review summarizes presentations from the 7th Annual Aging Research and Drug Discovery (ARDD) meeting, held online on the 1st to 4th of September 2020. The meeting covered topics related to new methodologies to study aging, knowledge about basic mechanisms of longevity, latest interventional strategies to target the aging process as well as discussions about the impact of aging research on society and economy. More than 2000 participants and 65 speakers joined the meeting and we already look forward to an even larger meeting next year. Please mark your calendars for the 8th ARDD meeting that is scheduled for the 31st of August to 3rd of September, 2021, at Columbia University, USA.
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- 2020
8. Histone malonylation is regulated by SIRT5 and KAT2A
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Zhang, Ran, Bons, Joanna, Scheidemantle, Grace, Liu, Xiaojing, Bielska, Olga, Carrico, Chris, Rose, Jacob, Heckenbach, Indra, Scheibye-Knudsen, Morten, Schilling, Birgit, and Verdin, Eric
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- 2023
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9. Nuclear morphology is a deep learning biomarker of cellular senescence
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Heckenbach, Indra, Mkrtchyan, Garik V., Ezra, Michael Ben, Bakula, Daniela, Madsen, Jakob Sture, Nielsen, Malte Hasle, Oró, Denise, Osborne, Brenna, Covarrubias, Anthony J, Idda, M. Laura, Gorospe, Myriam, Mortensen, Laust, Verdin, Eric, Westendorp, Rudi, and Scheibye-Knudsen, Morten
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- 2022
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10. A novel splice variant of Elp3/Kat9 regulates mitochondrial tRNA modification and function
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Boutoual, Rachid, Jo, Hyunsun, Heckenbach, Indra, Tiwari, Ritesh, Kasler, Herbert, Lerner, Chad A., Shah, Samah, Schilling, Birgit, Calvanese, Vincenzo, Rardin, Matthew J., Scheibye-Knudsen, Morten, and Verdin, Eric
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- 2022
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11. Deprogramming metabolism in pancreatic cancer with a bi-functional GPR55 inhibitor and biased β2 adrenergic agonist
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Wnorowski, Artur, Dudzik, Danuta, Bernier, Michel, Wójcik, Jakub, Keijzers, Guido, Diaz-Ruiz, Alberto, Mazur, Karolina, Zhang, Yongqing, Han, Haiyong, Scheibye-Knudsen, Morten, Jozwiak, Krzysztof, Barbas, Coral, and Wainer, Irving W.
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- 2022
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12. Cellular reprogramming by Acly inhibition using SB-204990 modulates molecular mechanisms with aging
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Sola-García, Alejandro, Cáliz-Molina, María Ángeles, Villanueva, Isabel Espadas, Petr, Michael, Panadero-Morón, Concepción, González-Morán, Daniel, Martín-Vázquez, María Eugenia, Narbona-Pérez, Álvaro Jesús, López-Noriega, Livia, Martínez-Corrales, Guillermo, López-Fernández-Sobrino, Raúl, Marin, Lina M. Carmona, Martínez-Force, Enrique, Yanes, Oscar, Vinaixa, María, López-López, Daniel, Reyes, José Carlos, Dopazo, Joaquín, Martín, Franz, Benoit R. Gauthier, Scheibye-Knudsen, Morten, Capilla-González, Vivian, and Martín-Montalvo, Alejandro
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Aging, metabolism - Abstract
iTRAQ labeling with two 8-plex iTRAQ kits was performed in the Proteomic facility of the Institute of Biomedicine of Seville using their standard protocols. Individual liver samples were isolated in urea lysis buffer (8 M urea, 25 mM Tris, 100 mM NaCl, 25 mM NaF, 10 mM Na4P2O7, 50 mM β-glycerophospate, 1 mM Na3VO4, 1:100 protease inhibitors and 1:100 deacetylase inhibitors, pH 8). Samples were sonicated for 10 seconds and centrifuged at 20000 x g for 15 min at 4 ºC. The supernatant was harvested and stored at -80º C. Then, samples were reduced with 50 mM tris-(2-carboxyethyl)phosphine (AB Sciex) at 60 °C for 1 hour with shaking and were subsequently alkylated using 200 mM S-methyl methanethiosulfonate (AB Sciex) for 30 min at room temperature. Samples were then trypsinized at 37 °C in a 10:1 ratio (w/w) of substrate/enzyme in a water bath overnight (Promega). Then, samples were speed-vac dried. The iTRAQ-labeling assay was conducted according to the manufacturer’s instructions (iTRAQ 8-plex, AB Sciex). Briefly, peptides were reconstituted in 1M triethylammonium bicarbonate (Sigma-Aldrich St. Louis, MO, USA), 0.05% SDS, 1:100 phosphatase inhibitor cocktail, 1:100 protease inhibitor cocktail, and 0.002% benzonase (Novagen, Argentina) and labeled with one isobaric amine-reactive tag. After 2 hoursof incubation, labeled samples were pooled, dried at 45 °C, and stored overnight at 4 °C. iTRAQ-labeled samples were desalted using Oasis HLB C18 cartridges (Waters, Milford, MA, USA) and dried using a vacuum centrifuge. Peptides were then prefractionated using MCX Oasis columns (Waters) and increasing concentrations (50-2000 mM) of ammonium formate. Fractions were collected, individually washed using C18 cartridges and dried. Peptides from each fraction were separated using nano-liquid chromatography (nano LC 1000, Thermo Scientific) and analyzed by means of nano-electrospray ionization (Proxeon Biosystems, Odense, Denmark) connected to a Q Exactive Plus Orbitrap mass spectrometer (Thermo Scientific). Briefly, 13 µL of each fraction was loaded, preconcentrated, and washed in an Acclaim PepMap (75 µm × 2 cm, nanoViper, C18, 3 µm, 100 Å) precolumn (Thermo Scientific). Peptides were separated in an analytical column (75 µm × 15 cm, nanoViper, C18, 2 µm, 100 Å, Acclaim PepMap RSLC) for 240 min at 200 nL/min (Thermo Scientific). Peptides were eluted with a gradient of buffer A (0.1% formic acid, 100% H2O) to buffer B (0.1% formic acid, 100% acetonitrile).Files contain data from the different fractions for iTRAQ experiments used for protein detection in RAW format.
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- 2025
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13. Evaluating race and sex diversity in the world's largest companies using deep neural networks
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Chekanov, Konstantin, Mamoshina, Polina, Yampolskiy, Roman V., Timofte, Radu, Scheibye-Knudsen, Morten, and Zhavoronkov, Alex
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Computer Science - Computers and Society ,Computer Science - Artificial Intelligence ,Computer Science - Learning - Abstract
Diversity is one of the fundamental properties for the survival of species, populations, and organizations. Recent advances in deep learning allow for the rapid and automatic assessment of organizational diversity and possible discrimination by race, sex, age and other parameters. Automating the process of assessing the organizational diversity using the deep neural networks and eliminating the human factor may provide a set of real-time unbiased reports to all stakeholders. In this pilot study we applied the deep-learned predictors of race and sex to the executive management and board member profiles of the 500 largest companies from the 2016 Forbes Global 2000 list and compared the predicted ratios to the ratios within each company's country of origin and ranked them by the sex-, age- and race- diversity index (DI). While the study has many limitations and no claims are being made concerning the individual companies, it demonstrates a method for the rapid and impartial assessment of organizational diversity using deep neural networks.
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- 2017
14. Aging and drug discovery
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Bakula, Daniela, Aliper, Alexander M, Mamoshina, Polina, Petr, Michael A, Teklu, Amanuel, Baur, Joseph A, Campisi, Judith, Ewald, Collin Y, Georgievskaya, Anastasia, Gladyshev, Vadim N, Kovalchuk, Olga, Lamming, Dudley W, Luijsterburg, Martijn S, Martín-Montalvo, Alejandro, Maudsley, Stuart, Mkrtchyan, Garik V, Moskalev, Alexey, Olshansky, S Jay, Ozerov, Ivan V, Pickett, Alexander, Ristow, Michael, Zhavoronkov, Alex, and Scheibye-Knudsen, Morten
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Biochemistry and Cell Biology ,Biomedical and Clinical Sciences ,Clinical Sciences ,Biological Sciences ,Aging ,Good Health and Well Being ,aging ,drug discovery ,Biochemistry and cell biology ,Clinical sciences - Abstract
Multiple interventions in the aging process have been discovered to extend the healthspan of model organisms. Both industry and academia are therefore exploring possible transformative molecules that target aging and age-associated diseases. In this overview, we summarize the presented talks and discussion points of the 5th Annual Aging and Drug Discovery Forum 2018 in Basel, Switzerland. Here academia and industry came together, to discuss the latest progress and issues in aging research. The meeting covered talks about the mechanistic cause of aging, how longevity signatures may be highly conserved, emerging biomarkers of aging, possible interventions in the aging process and the use of artificial intelligence for aging research and drug discovery. Importantly, a consensus is emerging both in industry and academia, that molecules able to intervene in the aging process may contain the potential to transform both societies and healthcare.
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- 2018
15. High-confidence cancer patient stratification through multiomics investigation of DNA repair disorders
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Mkrtchyan, Garik V., Veviorskiy, Alexander, Izumchenko, Evgeny, Shneyderman, Anastasia, Pun, Frank W., Ozerov, Ivan V., Aliper, Alex, Zhavoronkov, Alex, and Scheibye-Knudsen, Morten
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- 2022
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16. Deep learning assessment of senescence-associated nuclear morphologies in mammary tissue from healthy female donors to predict future risk of breast cancer: a retrospective cohort study
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Heckenbach, Indra, Powell, Mark, Fuller, Sophia, Henry, Jill, Rysdyk, Sam, Cui, Jenny, Teklu, Amanuel Abraha, Verdin, Eric, Benz, Christopher, and Scheibye-Knudsen, Morten
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Cellular senescence has been associated with cancer as either a barrier mechanism restricting autonomous cell proliferation or a tumour-promoting microenvironmental mechanism that secretes proinflammatory paracrine factors. With most work done in non-human models and the heterogeneous nature of senescence, the precise role of senescent cells in the development of cancer in humans is not well understood. Furthermore, more than 1 million non-malignant breast biopsies are taken every year that could be a major resource for risk stratification. We aimed to explore the clinical relevance for breast cancer development of markers of senescence in mammary tissue from healthy female donors.
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- 2024
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17. Meeting summary of The NYO3 5th NO-Age/AD meeting and the 1st Norway-UK joint meeting on ageing and dementia: recent progress on the mechanisms and interventional strategies
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Wang, He-Ling, Siow, Richard, Schmauck-Medina, Tomas, Zhang, Jianying, Sandset, Per Morten, Filshie, Clare, Lund, Øystein, Partridge, Linda, Bergersen, Linda Hildegard, Juel Rasmussen, Lene, Palikaras, Konstantinos, Sotiropoulos, Ioannis, Storm-Mathisen, Jon, Rubinsztein, David C, Spillantini, Maria Grazia, De Zeeuw, Chris I, Watne, Leiv Otto, Vyhnalek, Martin, Veverova, Katerina, Liang, Kristina Xiao, Tavernarakis, Nektarios, Bohr, Vilhelm A, Yokote, Koutaro, Saarela, Janna, Nilsen, Hilde, Gonos, Efstathios S, Scheibye-Knudsen, Morten, Chen, Guobing, Kato, Hisaya, Selbæk, Geir, Fladby, Tormod, Nilsson, Per, Simonsen, Anne, Aarsland, Dag, Lautrup, Sofie, Ottersen, Ole Petter, Cox, Lynne S, Fang, Evandro F, Wang, He-Ling, Siow, Richard, Schmauck-Medina, Tomas, Zhang, Jianying, Sandset, Per Morten, Filshie, Clare, Lund, Øystein, Partridge, Linda, Bergersen, Linda Hildegard, Juel Rasmussen, Lene, Palikaras, Konstantinos, Sotiropoulos, Ioannis, Storm-Mathisen, Jon, Rubinsztein, David C, Spillantini, Maria Grazia, De Zeeuw, Chris I, Watne, Leiv Otto, Vyhnalek, Martin, Veverova, Katerina, Liang, Kristina Xiao, Tavernarakis, Nektarios, Bohr, Vilhelm A, Yokote, Koutaro, Saarela, Janna, Nilsen, Hilde, Gonos, Efstathios S, Scheibye-Knudsen, Morten, Chen, Guobing, Kato, Hisaya, Selbæk, Geir, Fladby, Tormod, Nilsson, Per, Simonsen, Anne, Aarsland, Dag, Lautrup, Sofie, Ottersen, Ole Petter, Cox, Lynne S, and Fang, Evandro F
- Abstract
Unhealthy ageing poses a global challenge with profound healthcare and socioeconomic implications. Slowing down the ageing process offers a promising approach to reduce the burden of a number of age-related diseases, such as dementia, promoting healthy longevity in the old population. In response to the challenge of the ageing population and with a view to the future, Norway and the UK are fostering collaborations, supported by a "Money Follows Cooperation agreement" between the two nations. The inaugural Norway-UK joint meeting on ageing and dementia gathered leading experts on ageing and dementia from the two nations to share their latest discoveries in related fields. Since ageing is an international challenge, and to foster collaborations, we also invited leading scholars from 11 additional countries to join this event. This report provides a summary of the conference, highlighting recent progress on molecular ageing mechanisms, genetic risk factors, DNA damage and repair, mitophagy, autophagy, as well as progress on a series of clinical trials (e.g., using NAD+ precursors). The meeting facilitated dialogue among policy makers, administrative leaders, researchers, and clinical experts, aiming to promote international research collaborations and to translate findings into clinical applications and interventions to advance healthy ageing.
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- 2024
18. Meeting Summary of The NYO3 5th NO-Age/AD Meeting and the 1st Norway-UK Joint Meeting on Aging and Dementia:Recent Progress on the Mechanisms and Interventional Strategies
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Wang, He Ling, Siow, Richard, Schmauck-Medina, Tomas, Zhang, Jianying, Sandset, Per Morten, Filshie, Clare, Lund, Øystein, Partridge, Linda, Bergersen, Linda Hildegard, Juel Rasmussen, Lene, Palikaras, Konstantinos, Sotiropoulos, Ioannis, Storm-Mathisen, Jon, Rubinsztein, David C., Spillantini, Maria Grazia, De Zeeuw, Chris I., Watne, Leiv Otto, Vyhnalek, Martin, Veverova, Katerina, Liang, Kristina Xiao, Tavernarakis, Nektarios, Bohr, Vilhelm A., Yokote, Koutaro, Saarela, Janna, Nilsen, Hilde, Gonos, Efstathios S., Scheibye-Knudsen, Morten, Chen, Guobing, Kato, Hisaya, Selbæk, Geir, Fladby, Tormod, Nilsson, Per, Simonsen, Anne, Aarsland, Dag, Lautrup, Sofie, Ottersen, Ole Petter, Cox, Lynne S., Fang, Evandro F., Wang, He Ling, Siow, Richard, Schmauck-Medina, Tomas, Zhang, Jianying, Sandset, Per Morten, Filshie, Clare, Lund, Øystein, Partridge, Linda, Bergersen, Linda Hildegard, Juel Rasmussen, Lene, Palikaras, Konstantinos, Sotiropoulos, Ioannis, Storm-Mathisen, Jon, Rubinsztein, David C., Spillantini, Maria Grazia, De Zeeuw, Chris I., Watne, Leiv Otto, Vyhnalek, Martin, Veverova, Katerina, Liang, Kristina Xiao, Tavernarakis, Nektarios, Bohr, Vilhelm A., Yokote, Koutaro, Saarela, Janna, Nilsen, Hilde, Gonos, Efstathios S., Scheibye-Knudsen, Morten, Chen, Guobing, Kato, Hisaya, Selbæk, Geir, Fladby, Tormod, Nilsson, Per, Simonsen, Anne, Aarsland, Dag, Lautrup, Sofie, Ottersen, Ole Petter, Cox, Lynne S., and Fang, Evandro F.
- Abstract
Unhealthy aging poses a global challenge with profound healthcare and socioeconomic implications. Slowing down the aging process offers a promising approach to reduce the burden of a number of age-related diseases, such as dementia, and promoting healthy longevity in the old population. In response to the challenge of the aging population and with a view to the future, Norway and the United Kingdom are fostering collaborations, supported by a “Money Follows Cooperation agreement” between the 2 nations. The inaugural Norway–UK joint meeting on aging and dementia gathered leading experts on aging and dementia from the 2 nations to share their latest discoveries in related fields. Since aging is an international challenge, and to foster collaborations, we also invited leading scholars from 11 additional countries to join this event. This report provides a summary of the conference, highlighting recent progress on molecular aging mechanisms, genetic risk factors, DNA damage and repair, mitophagy, autophagy, as well as progress on a series of clinical trials (eg, using NAD+ precursors). The meeting facilitated dialogue among policymakers, administrative leaders, researchers, and clinical experts, aiming to promote international research collaborations and to translate findings into clinical applications and interventions to advance healthy aging., Unhealthy aging poses a global challenge with profound healthcare and socioeconomic implications. Slowing down the aging process offers a promising approach to reduce the burden of a number of age-related diseases, such as dementia, and promoting healthy longevity in the old population. In response to the challenge of the aging population and with a view to the future, Norway and the United Kingdom are fostering collaborations, supported by a "Money Follows Cooperation agreement" between the 2 nations. The inaugural Norway-UK joint meeting on aging and dementia gathered leading experts on aging and dementia from the 2 nations to share their latest discoveries in related fields. Since aging is an international challenge, and to foster collaborations, we also invited leading scholars from 11 additional countries to join this event. This report provides a summary of the conference, highlighting recent progress on molecular aging mechanisms, genetic risk factors, DNA damage and repair, mitophagy, autophagy, as well as progress on a series of clinical trials (eg, using NAD+ precursors). The meeting facilitated dialogue among policymakers, administrative leaders, researchers, and clinical experts, aiming to promote international research collaborations and to translate findings into clinical applications and interventions to advance healthy aging.
- Published
- 2024
19. Defining the progeria phenome
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Worm, Cecilie, Schambye, Maya Elena Ramirez, Mkrtchyan, Garik V., Veviorskiy, Alexander, Shneyderman, Anastasia, Ozerov, Ivan V., Zhavoronkov, Alex, Bakula, Daniela, Scheibye-Knudsen, Morten, Worm, Cecilie, Schambye, Maya Elena Ramirez, Mkrtchyan, Garik V., Veviorskiy, Alexander, Shneyderman, Anastasia, Ozerov, Ivan V., Zhavoronkov, Alex, Bakula, Daniela, and Scheibye-Knudsen, Morten
- Abstract
Progeroid disorders are a heterogenous group of rare and complex hereditary syndromes presenting with pleiotropic phenotypes associated with normal aging. Due to the large variation in clinical presentation the diseases pose a diagnostic challenge for clinicians which consequently restricts medical research. To accommodate the challenge, we compiled a list of known progeroid syndromes and calculated the mean prevalence of their associated phenotypes, defining what we term the ‘progeria phenome’. The data were used to train a support vector machine that is available at https://www.mitodb.com and able to classify progerias based on phenotypes. Furthermore, this allowed us to investigate the correlation of progeroid syndromes and syndromes with various pathogenesis using hierarchical clustering algorithms and disease networks. We detected that ataxia-telangiectasia like disorder 2, spastic paraplegia 49 and Meier-Gorlin syndrome display strong association to progeroid syndromes, thereby implying that the syndromes are previously unrecognized progerias. In conclusion, our study has provided tools to evaluate the likelihood of a syndrome or patient being progeroid. This is a considerable step forward in our understanding of what constitutes a premature aging disorder and how to diagnose them., Progeroid disorders are a heterogenous group of rare and complex hereditary syndromes presenting with pleiotropic phenotypes associated with normal aging. Due to the large variation in clinical presentation the diseases pose a diagnostic challenge for clinicians which consequently restricts medical research. To accommodate the challenge, we compiled a list of known progeroid syndromes and calculated the mean prevalence of their associated phenotypes, defining what we term the ‘progeria phenome’. The data were used to train a support vector machine that is available at https://www.mitodb.com and able to classify progerias based on phenotypes. Furthermore, this allowed us to investigate the correlation of progeroid syndromes and syndromes with various pathogenesis using hierarchical clustering algorithms and disease networks. We detected that ataxia-telangiectasia like disorder 2, spastic paraplegia 49 and Meier-Gorlin syndrome display strong association to progeroid syndromes, thereby implying that the syndromes are previously unrecognized progerias. In conclusion, our study has provided tools to evaluate the likelihood of a syndrome or patient being progeroid. This is a considerable step forward in our understanding of what constitutes a premature aging disorder and how to diagnose them.
- Published
- 2024
20. Mitophagy and Neuroprotection
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Lou, Guofeng, Palikaras, Konstantinos, Lautrup, Sofie, Scheibye-Knudsen, Morten, Tavernarakis, Nektarios, and Fang, Evandro F.
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- 2020
- Full Text
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21. Defining the progeria phenome
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Worm, Cecilie, primary, Schambye, Maya Elena Ramirez, additional, Mkrtchyan, Garik V., additional, Veviorskiy, Alexander, additional, Shneyderman, Anastasia, additional, Ozerov, Ivan V., additional, Zhavoronkov, Alex, additional, Bakula, Daniela, additional, and Scheibye-Knudsen, Morten, additional
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- 2024
- Full Text
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22. Meeting summary of The NYO3 5th NO-Age/AD meeting and the 1st Norway-UK joint meeting on ageing and dementia: recent progress on the mechanisms and interventional strategies
- Author
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Wang, He-Ling, primary, Siow, Richard, additional, Schmauck-Medina, Tomas, additional, Zhang, Jianying, additional, Sandset, Per Morten, additional, Filshie, Clare, additional, Lund, Øystein, additional, Partridge, Linda, additional, Bergersen, Linda Hildegard, additional, Juel Rasmussen, Lene, additional, Palikaras, Konstantinos, additional, Sotiropoulos, Ioannis, additional, Storm-Mathisen, Jon, additional, Rubinsztein, David C, additional, Spillantini, Maria Grazia, additional, De Zeeuw, Chris I, additional, Watne, Leiv Otto, additional, Vyhnalek, Martin, additional, Veverova, Katerina, additional, Liang, Kristina Xiao, additional, Tavernarakis, Nektarios, additional, Bohr, Vilhelm A, additional, Yokote, Koutaro, additional, Saarela, Janna, additional, Nilsen, Hilde, additional, Gonos, Efstathios S, additional, Scheibye-Knudsen, Morten, additional, Chen, Guobing, additional, Kato, Hisaya, additional, Selbæk, Geir, additional, Fladby, Tormod, additional, Nilsson, Per, additional, Simonsen, Anne, additional, Aarsland, Dag, additional, Lautrup, Sofie, additional, Ottersen, Ole Petter, additional, Cox, Lynne S, additional, and Fang, Evandro F, additional
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- 2024
- Full Text
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23. EX-vivo whole blood stimulation with A2E does not elicit an inflammatory cytokine response in patients with age-related macular degeneration
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Durhuus, Jon Ambæk, Rozing, Maarten P., Nielsen, Marie Krogh, Molbech, Christopher Rue, Keijzers, Guido, Scheibye-Knudsen, Morten, Rasmussen, Lene Juel, Westendorp, Rudi G. J., and Sørensen, Torben Lykke
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- 2021
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24. Senescent cells promote tissue NAD+ decline during ageing via the activation of CD38+ macrophages
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Covarrubias, Anthony J., Kale, Abhijit, Perrone, Rosalba, Lopez-Dominguez, Jose Alberto, Pisco, Angela Oliveira, Kasler, Herbert G., Schmidt, Mark S., Heckenbach, Indra, Kwok, Ryan, Wiley, Christopher D., Wong, Hoi-Shan, Gibbs, Eddy, Iyer, Shankar S., Basisty, Nathan, Wu, Qiuxia, Kim, Ik-Jung, Silva, Elena, Vitangcol, Kaitlyn, Shin, Kyong-Oh, Lee, Yong-Moon, Riley, Rebeccah, Ben-Sahra, Issam, Ott, Melanie, Schilling, Birgit, Scheibye-Knudsen, Morten, Ishihara, Katsuhiko, Quake, Stephen R., Newman, John, Brenner, Charles, Campisi, Judith, and Verdin, Eric
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- 2020
- Full Text
- View/download PDF
25. A High-Fat Diet and NAD+ Activate Sirt1 to Rescue Premature Aging in Cockayne Syndrome
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Scheibye-Knudsen, Morten, Mitchell, Sarah J, Fang, Evandro F, Iyama, Teruaki, Ward, Theresa, Wang, James, Dunn, Christopher A, Singh, Nagendra, Veith, Sebastian, Hasan-Olive, Md Mahdi, Mangerich, Aswin, Wilson, Mark A, Mattson, Mark P, Bergersen, Linda H, Cogger, Victoria C, Warren, Alessandra, Le Couteur, David G, Moaddel, Ruin, Wilson, David M, Croteau, Deborah L, de Cabo, Rafael, and Bohr, Vilhelm A
- Subjects
Aging ,Neurosciences ,Brain Disorders ,Genetics ,Nutrition ,Intellectual and Developmental Disabilities (IDD) ,Complementary and Integrative Health ,2.1 Biological and endogenous factors ,Aetiology ,3-Hydroxybutyric Acid ,Aging ,Premature ,Animals ,Cell Line ,Cockayne Syndrome ,Diet ,High-Fat ,Enzyme Activation ,Humans ,Mice ,Mice ,Inbred C57BL ,Mitochondria ,NAD ,Poly (ADP-Ribose) Polymerase-1 ,Poly(ADP-ribose) Polymerases ,Sirtuin 1 ,Biochemistry and Cell Biology ,Medical Biochemistry and Metabolomics ,Endocrinology & Metabolism - Abstract
Cockayne syndrome (CS) is an accelerated aging disorder characterized by progressive neurodegeneration caused by mutations in genes encoding the DNA repair proteins CS group A or B (CSA or CSB). Since dietary interventions can alter neurodegenerative processes, Csb(m/m) mice were given a high-fat, caloric-restricted, or resveratrol-supplemented diet. High-fat feeding rescued the metabolic, transcriptomic, and behavioral phenotypes of Csb(m/m) mice. Furthermore, premature aging in CS mice, nematodes, and human cells results from aberrant PARP activation due to deficient DNA repair leading to decreased SIRT1 activity and mitochondrial dysfunction. Notably, β-hydroxybutyrate levels are increased by the high-fat diet, and β-hydroxybutyrate, PARP inhibition, or NAD(+) supplementation can activate SIRT1 and rescue CS-associated phenotypes. Mechanistically, CSB can displace activated PARP1 from damaged DNA to limit its activity. This study connects two emerging longevity metabolites, β-hydroxybutyrate and NAD(+), through the deacetylase SIRT1 and suggests possible interventions for CS.
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- 2014
26. Chronically disrupted sleep induces senescence in the visceral adipose tissue of C57BL/6 mice
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Timonina, Daria, primary, Hormazabal, Genesis V, additional, Heckenbach, Indra, additional, Anderton, Edward, additional, Haky, Lauren, additional, Floro, Ariel, additional, Riley, Rebeccah, additional, Kwok, Ryan, additional, Breslin, Stella, additional, Ingle, Harris, additional, Tiwari, Ritesh, additional, Bielska, Olga, additional, Scheibye-Knudsen, Morten, additional, Kasler, Herbert, additional, Campisi, Judith, additional, Walter, Marius, additional, and Verdin, Eric, additional
- Published
- 2023
- Full Text
- View/download PDF
27. Cockayne syndrome group B protein prevents the accumulation of damaged mitochondria by promoting mitochondrial autophagy
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Scheibye-Knudsen, Morten, Ramamoorthy, Mahesh, Sykora, Peter, Maynard, Scott, Lin, Ping-Chang, Minor, Robin K, Wilson, David M, Cooper, Marcus, Spencer, Richard, de Cabo, Rafael, Croteau, Deborah L, and Bohr, Vilhelm A
- Subjects
Aging ,Intellectual and Developmental Disabilities (IDD) ,Genetics ,Rare Diseases ,Neurodegenerative ,Brain Disorders ,Aetiology ,2.1 Biological and endogenous factors ,Animals ,Autophagy ,Calcium ,Cells ,Cultured ,DNA Helicases ,DNA Repair Enzymes ,Humans ,Male ,Mice ,Mice ,Inbred C57BL ,Mitochondria ,Mitochondrial Membrane Transport Proteins ,Mitochondrial Permeability Transition Pore ,Poly-ADP-Ribose Binding Proteins ,Reactive Oxygen Species ,Medical and Health Sciences ,Immunology - Abstract
Cockayne syndrome (CS) is a devastating autosomal recessive disease characterized by neurodegeneration, cachexia, and accelerated aging. 80% of the cases are caused by mutations in the CS complementation group B (CSB) gene known to be involved in DNA repair and transcription. Recent evidence indicates that CSB is present in mitochondria, where it associates with mitochondrial DNA (mtDNA). We report an increase in metabolism in the CSB(m/m) mouse model and CSB-deficient cells. Mitochondrial content is increased in CSB-deficient cells, whereas autophagy is down-regulated, presumably as a result of defects in the recruitment of P62 and mitochondrial ubiquitination. CSB-deficient cells show increased free radical production and an accumulation of damaged mitochondria. Accordingly, treatment with the autophagic stimulators lithium chloride or rapamycin reverses the bioenergetic phenotype of CSB-deficient cells. Our data imply that CSB acts as an mtDNA damage sensor, inducing mitochondrial autophagy in response to stress, and that pharmacological modulators of autophagy are potential treatment options for this accelerated aging phenotype.
- Published
- 2012
28. Mitophagy in neurodegeneration and aging
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Fivenson, Elayne M., Lautrup, Sofie, Sun, Nuo, Scheibye-Knudsen, Morten, Stevnsner, Tinna, Nilsen, Hilde, Bohr, Vilhelm A., and Fang, Evandro F.
- Published
- 2017
- Full Text
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29. Blood Biochemistry Analysis to Detect Smoking Status and Quantify Accelerated Aging in Smokers
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Mamoshina, Polina, Kochetov, Kirill, Cortese, Franco, Kovalchuk, Anna, Aliper, Alexander, Putin, Evgeny, Scheibye-Knudsen, Morten, Cantor, Charles R., Skjodt, Neil M., Kovalchuk, Olga, and Zhavoronkov, Alex
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- 2019
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30. A ketogenic diet accelerates neurodegeneration in mice with induced mitochondrial DNA toxicity in the forebrain
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Lauritzen, Knut H., Hasan-Olive, Md Mahdi, Regnell, Christine E., Kleppa, Liv, Scheibye-Knudsen, Morten, Gjedde, Albert, Klungland, Arne, Bohr, Vilhelm A., Storm-Mathisen, Jon, and Bergersen, Linda H.
- Published
- 2016
- Full Text
- View/download PDF
31. Author Correction: Senescent cells promote tissue NAD+ decline during ageing via the activation of CD38+ macrophages
- Author
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Covarrubias, Anthony J., Kale, Abhijit, Perrone, Rosalba, Lopez-Dominguez, Jose Alberto, Pisco, Angela Oliveira, Kasler, Herbert G., Schmidt, Mark S., Heckenbach, Indra, Kwok, Ryan, Wiley, Christopher D., Wong, Hoi-Shan, Gibbs, Eddy, Iyer, Shankar S., Basisty, Nathan, Wu, Qiuxia, Kim, Ik-Jung, Silva, Elena, Vitangcol, Kaitlyn, Shin, Kyong-Oh, Lee, Yong-Moon, Riley, Rebeccah, Ben-Sahra, Issam, Ott, Melanie, Schilling, Birgit, Scheibye-Knudsen, Morten, Ishihara, Katsuhiko, Quake, Stephen R., Newman, John, Brenner, Charles, Campisi, Judith, and Verdin, Eric
- Published
- 2021
- Full Text
- View/download PDF
32. Breast cancer risk based on a deep learning predictor of senescent cells in normal tissue
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Heckenbach, Indra, primary, Powell, Mark, additional, Fuller, Sophia, additional, Henry, Jill, additional, Rysdyk, Sam, additional, Cui, Jenny, additional, Teklu, Amanuel Abraha, additional, Verdin, Eric, additional, Benz, Christopher, additional, and Scheibye-Knudsen, Morten, additional
- Published
- 2023
- Full Text
- View/download PDF
33. The human pathome shows sex and tissue specific aging patterns
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Scheibye-Knudsen, Morten, primary, Ezra, Michael Ben, additional, Garbrecht, Jonas, additional, Rasmussen, Nasya, additional, Heckenbach, Indra, additional, Petr, Michael, additional, Bakula, Daniela, additional, and Mortensen, Laust, additional
- Published
- 2023
- Full Text
- View/download PDF
34. Tracking the dynamics of cellular senescence
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Heckenbach, Indra, primary and Scheibye-Knudsen, Morten, additional
- Published
- 2023
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- View/download PDF
35. Tracking the dynamics of cellular senescence
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Heckenbach, Indra, Scheibye-Knudsen, Morten, Heckenbach, Indra, and Scheibye-Knudsen, Morten
- Abstract
Cellular senescence, often defined as a state of permanent cell cycle arrest, is a complex and multifaceted process that arises in diverse contexts. First identified as the end point of replicative exhaustion [1], senescence also arises from DNA damage, mitochondrial dysfunction, oxidative stress, sustained mitogenic signaling through oncogenes, proteostatic stress and other. Senescence is under normal physiological conditions involved in wound healing and embryogenesis. Diverse processes trigger multiple mechanisms that converge into cell cycle arrest and a secretory phenotype. Two key pathways may lead to senescence, including the stress-associated p16/Rb pathway and the p53/p21 damage control mechanism. Senescence has been further characterized by its inflammatory secretome (SASP) that serves to signal immune clearance, although it differs by cell type and method of senescence induction. Despite its variable secretome, the SASP may better define senescence since nondividing cells including neurons and cardiomyocytes may exhibit senescent characteristics, despite being frozen at the G0/G1 stage in the cell cycle
- Published
- 2023
36. Metabolic reprogramming by Acly inhibition using SB-204990 alters glucoregulation and modulates molecular mechanisms associated with aging
- Author
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Ministerio de Economía y Competitividad (España), Instituto de Salud Carlos III, European Commission, Ministerio de Ciencia e Innovación (España), Sola-García, Alejandro, Cáliz-Molina, María Ángeles, Espadas Villanueva, Isabel, Petr, Michael, Panadero-Morón, Concepción, González-Morán, Daniel, Martín-Vázquez, Eugenia, Narbona-Pérez, Álvaro Jesús, López-Noriega, Livia, Martínez-Corrales, Guillermo, López-Fernández-Sobrino, Raúl, Carmona-Marin, Lina M, Martínez-Force, Enrique, Yanes, Oscar, Vinaixa, Maria, López-López, Daniel, Reyes, José C., Dopazo, Joaquín, Martín, Franz, Gauthier, Benoit R., Scheibye-Knudsen, Morten, Capilla-González, Vivian, Martín-Montalvo, Alejandro, Ministerio de Economía y Competitividad (España), Instituto de Salud Carlos III, European Commission, Ministerio de Ciencia e Innovación (España), Sola-García, Alejandro, Cáliz-Molina, María Ángeles, Espadas Villanueva, Isabel, Petr, Michael, Panadero-Morón, Concepción, González-Morán, Daniel, Martín-Vázquez, Eugenia, Narbona-Pérez, Álvaro Jesús, López-Noriega, Livia, Martínez-Corrales, Guillermo, López-Fernández-Sobrino, Raúl, Carmona-Marin, Lina M, Martínez-Force, Enrique, Yanes, Oscar, Vinaixa, Maria, López-López, Daniel, Reyes, José C., Dopazo, Joaquín, Martín, Franz, Gauthier, Benoit R., Scheibye-Knudsen, Morten, Capilla-González, Vivian, and Martín-Montalvo, Alejandro
- Abstract
ATP-citrate lyase is a central integrator of cellular metabolism in the interface of protein, carbohydrate, and lipid metabolism. The physiological consequences as well as the molecular mechanisms orchestrating the response to long-term pharmacologically induced Acly inhibition are unknown. We report here that the Acly inhibitor SB-204990 improves metabolic health and physical strength in wild-type mice when fed with a high-fat diet, while in mice fed with healthy diet results in metabolic imbalance and moderated insulin resistance. By applying a multiomic approach using untargeted metabolomics, transcriptomics, and proteomics, we determined that, in vivo, SB-204990 plays a role in the regulation of molecular mechanisms associated with aging, such as energy metabolism, mitochondrial function, mTOR signaling, and folate cycle, while global alterations on histone acetylation are absent. Our findings indicate a mechanism for regulating molecular pathways of aging that prevents the development of metabolic abnormalities associated with unhealthy dieting. This strategy might be explored for devising therapeutic approaches to prevent metabolic diseases.
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- 2023
37. NAD+ Replenishment Improves Lifespan and Healthspan in Ataxia Telangiectasia Models via Mitophagy and DNA Repair
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Fang, Evandro Fei, Kassahun, Henok, Croteau, Deborah L., Scheibye-Knudsen, Morten, Marosi, Krisztina, Lu, Huiming, Shamanna, Raghavendra A., Kalyanasundaram, Sumana, Bollineni, Ravi Chand, Wilson, Mark A., Iser, Wendy B., Wollman, Bradley N., Morevati, Marya, Li, Jun, Kerr, Jesse S., Lu, Qiping, Waltz, Tyler B., Tian, Jane, Sinclair, David A., Mattson, Mark P., Nilsen, Hilde, and Bohr, Vilhelm A.
- Published
- 2016
- Full Text
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38. Effects of Sex, Strain, and Energy Intake on Hallmarks of Aging in Mice
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Mitchell, Sarah J., Madrigal-Matute, Julio, Scheibye-Knudsen, Morten, Fang, Evandro, Aon, Miguel, González-Reyes, José A., Cortassa, Sonia, Kaushik, Susmita, Gonzalez-Freire, Marta, Patel, Bindi, Wahl, Devin, Ali, Ahmed, Calvo-Rubio, Miguel, Burón, María I., Guiterrez, Vincent, Ward, Theresa M., Palacios, Hector H., Cai, Huan, Frederick, David W., Hine, Christopher, Broeskamp, Filomena, Habering, Lukas, Dawson, John, Beasley, T. Mark, Wan, Junxiang, Ikeno, Yuji, Hubbard, Gene, Becker, Kevin G., Zhang, Yongqing, Bohr, Vilhelm A., Longo, Dan L., Navas, Placido, Ferrucci, Luigi, Sinclair, David A., Cohen, Pinchas, Egan, Josephine M., Mitchell, James R., Baur, Joseph A., Allison, David B., Anson, R. Michael, Villalba, José M., Madeo, Frank, Cuervo, Ana Maria, Pearson, Kevin J., Ingram, Donald K., Bernier, Michel, and de Cabo, Rafael
- Published
- 2016
- Full Text
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39. Cockayne syndrome group A and B proteins converge on transcription-linked resolution of non-B DNA
- Author
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Scheibye-Knudsen, Morten, Tseng, Anne, Jensen, Martin Borch, Scheibye-Alsing, Karsten, Fang, Evandro Fei, Iyama, Teruaki, Bharti, Sanjay Kumar, Marosi, Krisztina, Froetscher, Lynn, Kassahun, Henok, Eckley, David Mark, Maul, Robert W., Bastian, Paul, De, Supriyo, Ghosh, Soumita, Nilsen, Hilde, Goldberg, Ilya G., Mattson, Mark P., Wilson, David M., Brosh, Robert M., Gorospe, Myriam, and Bohr, Vilhelm A.
- Published
- 2016
40. Breast cancer risk based on a deep learning predictor of senescent cells in normal tissue
- Author
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Heckenbach, Indra, Powell, Mark, Fuller, Sophia, Henry, Jill, Rysdyk, Sam, Cui, Jenny, Teklu, Amanuel Abraha, Verdin, Eric, Benz, Christopher, and Scheibye-Knudsen, Morten
- Subjects
Article - Abstract
SummaryBackgroundThe ability to predict future risk of cancer development in non-malignant biopsies is poor. Cellular senescence has been associated with cancer as either a barrier mechanism restricting autonomous cell proliferation or a tumor-promoting microenvironmental mechanism that secretes pro-inflammatory paracrine factors. With most work done in non-human models and the heterogenous nature of senescence the precise role of senescent cells in the development of cancer in humans is not well understood. Further, more than one million non-malignant breast biopsies are taken every year that could be a major source of risk-stratification for women.MethodsWe applied single cell deep learning senescence predictors based on nuclear morphology to histological images of 4,411 H&E-stained breast biopsies from healthy female donors. Senescence was predicted in the epithelial, stromal, and adipocyte compartments using predictor models trained on cells induced to senescence by ionizing radiation (IR), replicative exhaustion (RS), or antimycin A, Atv/R and doxorubicin (AAD) exposures. To benchmark our senescence-based prediction results we generated 5-year Gail scores, the current clinical gold standard for breast cancer risk prediction.FindingsWe found significant differences in adipocyte-specific IR and AAD senescence prediction for the 86 out of 4,411 healthy women who developed breast cancer an average 4.8 years after study entry. Risk models demonstrated that individuals in the upper median of scores for the adipocyte IR model had a higher risk (OR=1.71 [1.10-2.68], p=0.019), while the adipocyte AAD model revealed a reduced risk (OR=0.57 [0.36-0.88], p=0.013). Individuals with both adipocyte risk factors had an OR of 3.32 ([1.68-7.03], pInterpretationAssessment of senescence with deep learning allows considerable prediction of future cancer risk from non-malignant breast biopsies, something that was previously impossible to do. Furthermore, our results suggest an important role for microscope image-based deep learning models in predicting future cancer development. Such models could be incorporated into current breast cancer risk assessment and screening protocols.FundingThis study was funded by the Novo Nordisk Foundation (#NNF17OC0027812), and by the National Institutes of Health (NIH) Common Fund SenNet program (U54AG075932).
- Published
- 2023
41. The human pathome shows sex specific aging patterns post-development
- Author
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Ben Ezra, Michael, primary, Garbrecht, Jonas Bach, additional, Rasmussen, Nasya, additional, Heckenbach, Indra, additional, Petr, Michael Angelo, additional, Bakula, Daniela J, additional, Mortensen, Laust Hvas, additional, and Scheibye-Knudsen, Morten, additional
- Published
- 2023
- Full Text
- View/download PDF
42. Nicotinamide Riboside Alleviates Airway Inflammation in Chronic Obstructive Pulmonary Disease
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Norheim, Kristoffer L., primary, Ben Ezra, Michael, additional, Heckenbach, Indra, additional, Andreasson, Louise Munkholm, additional, Damgaard, Mads Vargas, additional, Berglind, Magnus, additional, Pricolo, Luca, additional, Treebak, Jonas Thue, additional, Ditlev, Sisse Bolm, additional, Porsbjerg, Celeste, additional, and Scheibye-Knudsen, Morten, additional
- Published
- 2023
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- View/download PDF
43. Loss of NEIL1 causes defects in olfactory function in mice
- Author
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Canugovi, Chandrika, Misiak, Magdalena, Scheibye-Knudsen, Morten, Croteau, Deborah L., Mattson, Mark P., and Bohr, Vilhelm A.
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- 2015
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44. Rapamycin: Current and Future Uses
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Scheibye-Knudsen, Morten, Fang, Evandro Fei, editor, and Ng, Tzi Bun, editor
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- 2013
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45. Monogenic Diseases of DNA Repair
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Keijzers, Guido, Bakula, Daniela, and Scheibye-Knudsen, Morten
- Published
- 2018
46. Nuclear DNA damage signalling to mitochondria in ageing
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Fang, Evandro Fei, Scheibye-Knudsen, Morten, Chua, Katrin F., Mattson, Mark P., Croteau, Deborah L., and Bohr, Vilhelm A.
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- 2016
- Full Text
- View/download PDF
47. Histone malonylation is regulated by SIRT5 and KAT2A
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Zhang, Ran, primary, Bons, Joanna, additional, Bielska, Olga, additional, Carrico, Chris, additional, Rose, Jacob, additional, Heckenbach, Indra, additional, Scheibye-Knudsen, Morten, additional, Schilling, Birgit, additional, and Verdin, Eric, additional
- Published
- 2022
- Full Text
- View/download PDF
48. CNOT6:A Novel Regulator of DNA Mismatch Repair
- Author
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Song, Peng, Liu, Shaojun, Liu, Dekang, Keijzers, Guido, Bakula, Daniela, Duan, Shunlei, de Wind, Niels, Ye, Zilu, Vakhrushev, Sergey Y., Scheibye-Knudsen, Morten, Rasmussen, Lene Juel, Song, Peng, Liu, Shaojun, Liu, Dekang, Keijzers, Guido, Bakula, Daniela, Duan, Shunlei, de Wind, Niels, Ye, Zilu, Vakhrushev, Sergey Y., Scheibye-Knudsen, Morten, and Rasmussen, Lene Juel
- Abstract
DNA mismatch repair (MMR) is a highly conserved pathway that corrects both base–base mispairs and insertion-deletion loops (IDLs) generated during DNA replication. Defects in MMR have been linked to carcinogenesis and drug resistance. However, the regulation of MMR is poorly understood. Interestingly, CNOT6 is one of four deadenylase subunits in the conserved CCR4-NOT complex and it targets poly(A) tails of mRNAs for degradation. CNOT6 is overexpressed in acute lymphoblastic leukemia (ALL), acute myeloid leukemia (AML) and androgen-independent prostate cancer cells, which suggests that an altered expression of CNOT6 may play a role in tumorigenesis. Here, we report that a depletion of CNOT6 sensitizes human U2OS cells to N-methyl-N′nitro-N-nitrosoguanidine (MNNG) and leads to enhanced apoptosis. We also demonstrate that the depletion of CNOT6 upregulates MMR and decreases the mutation frequency in MMR-proficient cells. Furthermore, the depletion of CNOT6 increases the stability of mRNA transcripts from MMR genes, leading to the increased expression of MMR proteins. Our work provides insight into a novel CNOT6-dependent mechanism for regulating MMR.
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- 2022
49. Clinical Trials Targeting Aging
- Author
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Nielsen, Johannes Leth, Bakula, Daniela, Scheibye-Knudsen, Morten, Nielsen, Johannes Leth, Bakula, Daniela, and Scheibye-Knudsen, Morten
- Abstract
The risk of morbidity and mortality increases exponentially with age. Chronic inflammation, accumulation of DNA damage, dysfunctional mitochondria, and increased senescent cell load are factors contributing to this. Mechanistic investigations have revealed specific pathways and processes which, proposedly, cause age-related phenotypes such as frailty, reduced physical resilience, and multi-morbidity. Among promising treatments alleviating the consequences of aging are caloric restriction and pharmacologically targeting longevity pathways such as the mechanistic target of rapamycin (mTOR), sirtuins, and anti-apoptotic pathways in senescent cells. Regulation of these pathways and processes has revealed significant health- and lifespan extending results in animal models. Nevertheless, it remains unclear if similar results translate to humans. A requirement of translation are the development of age- and morbidity associated biomarkers as longitudinal trials are difficult and not feasible, practical, nor ethical when human life span is the endpoint. Current biomarkers and the results of anti-aging intervention studies in humans will be covered within this paper. The future of clinical trials targeting aging may be phase 2 and 3 studies with larger populations if safety and tolerability of investigated medication continues not to be a hurdle for further investigations., The risk of morbidity and mortality increases exponentially with age. Chronic inflammation, accumulation of DNA damage, dysfunctional mitochondria, and increased senescent cell load are factors contributing to this. Mechanistic investigations have revealed specific pathways and processes which, proposedly, cause age-related phenotypes such as frailty, reduced physical resilience, and multi-morbidity. Among promising treatments alleviating the consequences of aging are caloric restriction and pharmacologically targeting longevity pathways such as the mechanistic target of rapamycin (mTOR), sirtuins, and anti-apoptotic pathways in senescent cells. Regulation of these pathways and processes has revealed significant health- and lifespan extending results in animal models. Nevertheless, it remains unclear if similar results translate to humans. A requirement of translation are the development of age- and morbidity associated biomarkers as longitudinal trials are difficult and not feasible, practical, nor ethical when human life span is the endpoint. Current biomarkers and the results of anti-aging intervention studies in humans will be covered within this paper. The future of clinical trials targeting aging may be phase 2 and 3 studies with larger populations if safety and tolerability of investigated medication continues not to be a hurdle for further investigations.
- Published
- 2022
50. NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health
- Author
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Lee, Patty J., Benz, Christopher C., Blood, Philip, Börner, Katy, Campisi, Judith, Chen, Feng, Daldrup-Link, Heike, De Jager, Phil, Ding, Li, Duncan, Francesca E., Eickelberg, Oliver, Fan, Rong, Finkel, Toren, Furman, David, Garovic, Vesna, Gehlenborg, Nils, Glass, Carolyn, Heckenbach, Indra, Joseph, Ziv Bar, Katiyar, Pragati, Kim, So Jin, Königshoff, Melanie, Kuchel, George A., Lee, Haesung, Lee, Jun Hee, Ma, Jian, Ma, Qin, Melov, Simon, Metis, Kay, Mora, Ana L., Musi, Nicolas, Neretti, Nicola, Passos, João F., Rahman, Irfan, Rivera-Mulia, Juan Carlos, Robson, Paul, Rojas, Mauricio, Roy, Ananda L., Scheibye-Knudsen, Morten, Schilling, Birgit, Shi, Pixu, Silverstein, Jonathan C., Suryadevara, Vidyani, Xie, Jichun, Wang, Jinhua, Wong, A. Ian, Niedernhofer, Laura J., Wang, Siyuan, Anvari, Hannah, Balough, Julia, Lee, Patty J., Benz, Christopher C., Blood, Philip, Börner, Katy, Campisi, Judith, Chen, Feng, Daldrup-Link, Heike, De Jager, Phil, Ding, Li, Duncan, Francesca E., Eickelberg, Oliver, Fan, Rong, Finkel, Toren, Furman, David, Garovic, Vesna, Gehlenborg, Nils, Glass, Carolyn, Heckenbach, Indra, Joseph, Ziv Bar, Katiyar, Pragati, Kim, So Jin, Königshoff, Melanie, Kuchel, George A., Lee, Haesung, Lee, Jun Hee, Ma, Jian, Ma, Qin, Melov, Simon, Metis, Kay, Mora, Ana L., Musi, Nicolas, Neretti, Nicola, Passos, João F., Rahman, Irfan, Rivera-Mulia, Juan Carlos, Robson, Paul, Rojas, Mauricio, Roy, Ananda L., Scheibye-Knudsen, Morten, Schilling, Birgit, Shi, Pixu, Silverstein, Jonathan C., Suryadevara, Vidyani, Xie, Jichun, Wang, Jinhua, Wong, A. Ian, Niedernhofer, Laura J., Wang, Siyuan, Anvari, Hannah, and Balough, Julia
- Abstract
Cells respond to many stressors by senescing, acquiring stable growth arrest, morphologic and metabolic changes, and a proinflammatory senescence-associated secretory phenotype. The heterogeneity of senescent cells (SnCs) and senescence-associated secretory phenotype are vast, yet ill characterized. SnCs have diverse roles in health and disease and are therapeutically targetable, making characterization of SnCs and their detection a priority. The Cellular Senescence Network (SenNet), a National Institutes of Health Common Fund initiative, was established to address this need. The goal of SenNet is to map SnCs across the human lifespan to advance diagnostic and therapeutic approaches to improve human health. State-of-the-art methods will be applied to identify, define and map SnCs in 18 human tissues. A common coordinate framework will integrate data to create four-dimensional SnC atlases. Other key SenNet deliverables include innovative tools and technologies to detect SnCs, new SnC biomarkers and extensive public multi-omics datasets. This Perspective lays out the impetus, goals, approaches and products of SenNet.
- Published
- 2022
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