11 results on '"ScaFi"'
Search Results
2. The progression rate of spinocerebellar ataxia type 2 changes with stage of disease
- Author
-
Thais Lampert Monte, Estela da Rosa Reckziegel, Marina Coutinho Augustin, Lucas D. Locks-Coelho, Amanda Senna P. Santos, Gabriel Vasata Furtado, Eduardo Preusser de Mattos, José Luiz Pedroso, Orlando Póvoas Barsottini, Fernando Regla Vargas, Maria-Luiza Saraiva-Pereira, Suzi Alves Camey, Vanessa Bielefeldt Leotti, Laura Bannach Jardim, and on behalf of Rede Neurogenética
- Subjects
Natural history ,NESSCA ,Progression rate ,SARA ,SCAFI ,Spinocerebellar ataxia type 2 ,Medicine - Abstract
Abstract Background Spinocerebellar ataxia type 2 (SCA2) affects several neurological structures, giving rise to multiple symptoms. However, only the natural history of ataxia is well known, as measured during the study duration. We aimed to describe the progression rate of ataxia, by the Scale for the Assessment and Rating of Ataxia (SARA), as well as the progression rate of the overall neurological picture, by the Neurological Examination Score for Spinocerebellar Ataxias (NESSCA), and not only during the study duration but also in a disease duration model. Comparisons between these models might allow us to explore whether progression is linear during the disease duration in SCA2; and to look for potential modifiers. Results Eighty–eight evaluations were prospectively done on 49 symptomatic subjects; on average (SD), study duration and disease duration models covered 13 (2.16) months and 14 (6.66) years of individuals’ life, respectively. SARA progressed 1.75 (CI 95%: 0.92–2.57) versus 0.79 (95% CI 0.45 to 1.14) points/year in the study duration and disease duration models. NESSCA progressed 1.45 (CI 95%: 0.74–2.16) versus 0.41 (95% CI 0.24 to 0.59) points/year in the same models. In order to explain these discrepancies, the progression rates of the study duration model were plotted against disease duration. Then an acceleration was detected after 10 years of disease duration: SARA scores progressed 0.35 before and 2.45 points/year after this deadline (p = 0.013). Age at onset, mutation severity, and presence of amyotrophy, parkinsonism, dystonic manifestations and cognitive decline at baseline did not influence the rate of disease progression. Conclusions NESSCA and SARA progression rates were not constant during disease duration in SCA2: early phases of disease were associated with slower progressions. Modelling of future clinical trials on SCA2 should take this phenomenon into account, since disease duration might impact on inclusion criteria, sample size, and study duration. Our database is available online and accessible to future studies aimed to compare the present data with other cohorts.
- Published
- 2018
- Full Text
- View/download PDF
3. Ophthalmological and Neurologic Manifestations in Pre-clinical and Clinical Phases of Spinocerebellar Ataxia Type 7.
- Author
-
Azevedo, Pietro B., Rocha, Anastácia G., Keim, Leda M. N., Lavinsky, Daniel, Furtado, Gabriel V., de Mattos, Eduardo P., Vargas, Fernando R., Leotti, Vanessa B., Saraiva-Pereira, Maria-Luiza, and Jardim, Laura B.
- Subjects
- *
SPINOCEREBELLAR ataxia , *CEREBELLUM degeneration , *VISUAL fields , *OPTICAL coherence tomography , *VISUAL acuity , *PERIMETRY - Abstract
Spinocerebellar ataxia type 7 (SCA7) is a polyglutamine disease that progressively affects the cerebellum, brainstem, and retina. SCA7 is quite rare, and insights into biomarkers and pre-clinical phases are still missing. We aimed to describe neurologic and ophthalmological findings observed in symptomatic and pre-symptomatic SCA7 subjects. Several neurologic scales, visual acuity, visual fields obtained by computer perimetry, and macular thickness in optical coherence tomography (mOCT) were measured in symptomatic carriers and at risk relatives. Molecular analysis of the ATXN7 was done blindly in individuals at risk. Thirteen symptomatic carriers, 3 pre-symptomatic subjects, and 5 related controls were enrolled. Symptomatic carriers presented scores significantly different from those of controls in most neurologic and ophthalmological scores. Gradual changes from controls to pre-symptomatic and then to symptomatic carriers were seen in mean (SD) of visual fields − 1.34 (1.15), − 2.81 (1.66). and − 9.56 (7.26); mOCT − 1.11 (2.6), − 3.48 (3.54), and − 7.73 (2.56) Z scores; and "Spinocerebellar Ataxia Functional Index (SCAFI)" − 1.16 (0.28), 0.65 (0.56), and − 0.61 (0.44), respectively. Visual fields and SCAFI were significantly correlated with time to disease onset (pre-symptomatic)/disease duration (symptomatic carriers). Visual fields, mOCT, and SCAFI stood out as candidates for state biomarkers for SCA7 since pre-symptomatic stages of disease. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
4. The progression rate of spinocerebellar ataxia type 2 changes with stage of disease.
- Author
-
Monte, Thais Lampert, Reckziegel, Estela da Rosa, Augustin, Marina Coutinho, Locks-Coelho, Lucas D., Santos, Amanda Senna P., Furtado, Gabriel Vasata, de Mattos, Eduardo Preusser, Pedroso, José Luiz, Barsottini, Orlando Póvoas, Vargas, Fernando Regla, Saraiva-Pereira, Maria-Luiza, Camey, Suzi Alves, Leotti, Vanessa Bielefeldt, Jardim, Laura Bannach, and Rede Neurogenética
- Subjects
- *
SPINOCEREBELLAR ataxia , *NEUROLOGIC examination , *SELF-discrepancy , *MUSCULAR atrophy , *CLINICAL trials - Abstract
Background: Spinocerebellar ataxia type 2 (SCA2) affects several neurological structures, giving rise to multiple symptoms. However, only the natural history of ataxia is well known, as measured during the study duration. We aimed to describe the progression rate of ataxia, by the Scale for the Assessment and Rating of Ataxia (SARA), as well as the progression rate of the overall neurological picture, by the Neurological Examination Score for Spinocerebellar Ataxias (NESSCA), and not only during the study duration but also in a disease duration model. Comparisons between these models might allow us to explore whether progression is linear during the disease duration in SCA2; and to look for potential modifiers.Results: Eighty-eight evaluations were prospectively done on 49 symptomatic subjects; on average (SD), study duration and disease duration models covered 13 (2.16) months and 14 (6.66) years of individuals' life, respectively. SARA progressed 1.75 (CI 95%: 0.92-2.57) versus 0.79 (95% CI 0.45 to 1.14) points/year in the study duration and disease duration models. NESSCA progressed 1.45 (CI 95%: 0.74-2.16) versus 0.41 (95% CI 0.24 to 0.59) points/year in the same models. In order to explain these discrepancies, the progression rates of the study duration model were plotted against disease duration. Then an acceleration was detected after 10 years of disease duration: SARA scores progressed 0.35 before and 2.45 points/year after this deadline (p = 0.013). Age at onset, mutation severity, and presence of amyotrophy, parkinsonism, dystonic manifestations and cognitive decline at baseline did not influence the rate of disease progression.Conclusions: NESSCA and SARA progression rates were not constant during disease duration in SCA2: early phases of disease were associated with slower progressions. Modelling of future clinical trials on SCA2 should take this phenomenon into account, since disease duration might impact on inclusion criteria, sample size, and study duration. Our database is available online and accessible to future studies aimed to compare the present data with other cohorts. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
5. NESSCA Validation and Responsiveness of Several Rating Scales in Spinocerebellar Ataxia Type 2.
- Author
-
Monte, Thais, Reckziegel, Estela, Augustin, Marina, Silva, Amanda, Locks-Coelho, Lucas, Barsottini, Orlando, Pedroso, José, Vargas, Fernando, Saraiva-Pereira, Maria-Luiza, Leotti, Vanessa, and Jardim, Laura
- Subjects
- *
SPINOCEREBELLAR ataxia , *NEUROLOGIC examination , *COMPARATIVE studies , *DISEASE progression , *RECEIVER operating characteristic curves , *STATISTICAL correlation , *DIAGNOSIS - Abstract
Spinocerebellar ataxia type 2 (SCA2), caused by a CAG expansion (CAGexp) at ATXN2, has a complex clinical picture. While validated ataxia scales are available, comprehensive instruments to measure all SCA2 neurological manifestations are required. This study aims to validate the Neurological Examination Score for the assessment of Spinocerebellar Ataxias (NESSCA) to be used in SCA2 and to compare its responsiveness to those obtained with other instruments. NESSCA, SARA, SCAFI, and CCFS scales were applied in symptomatic SCA2 patients. Correlations were done with age at onset, disease duration, CAGexp, and between scales. Responsiveness was estimated by comparing deltas of stable to worse patients after 12 months, according to Patient Global Impression of change, and the area under the curve (AUC) of the Receiver Operating Characteristics curve of scores range. Eighty-eight evaluations (49 patients) were obtained. NESSCA had an even distribution and correlated with disease duration ( r = 0.55), SARA ( r = 0.63), and CAGexp (rho = 0.32): both explained 44% of NESSCA variance. Deltas (95% CI) after 1 year in stable and worse patients were only significantly different for SARA. NESSCA, SARA, SCAFI, and CCFS AUC were 0.63, 0.81, 0.49, and 0.48, respectively. NESSCA is valid to be used in SCA2. However, the only instrument that presented good responsiveness to change in 1 year was SARA. We suggest that NESSCA can be used as a secondary outcome in future trials in SCA2 due to the burden of neurological disabilities related to disease progression. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
6. Tuple-Based Coordination in Large-Scale Situated Systems
- Author
-
Alessandro Ricci, Roberto Casadei, Mirko Viroli, Giorgio Audrito, F. Damiani and O. Dardha, Casadei R., Viroli M., Ricci A., Audrito G., Alma Mater Studiorum University of Bologna (UNIBO), Università degli studi di Torino (UNITO), Ferruccio Damiani, Ornela Dardha, TC 6, and WG 6.1
- Subjects
Structure (mathematical logic) ,Theoretical computer science ,Computer science ,aggregate computing ,ScaFi ,Aggregate (data warehouse) ,self-organisation ,tuple-based coordination ,0102 computer and information sciences ,02 engineering and technology ,Space (commercial competition) ,spatial tuples ,01 natural sciences ,[INFO.INFO-NI]Computer Science [cs]/Networking and Internet Architecture [cs.NI] ,010201 computation theory & mathematics ,Situated ,0202 electrical engineering, electronic engineering, information engineering ,Key (cryptography) ,[INFO]Computer Science [cs] ,spatial tuple ,020201 artificial intelligence & image processing ,Tuple ,Adaptation (computer science) ,Implementation - Abstract
Part 3: Large-Scale Decentalised Systems; International audience; Space and time are key elements for many computer-based systems and often elevated to first-class abstractions. In tuple-based coordination, Linda primitives have been independently extended with space (with tuples and queries spanning spatial regions) or time information (mostly for tuple scoping). However, recent works in collective adaptive systems and aggregate computing show that space and time can naturally be considered as two intertwined facets of a common coordination abstraction for situated distributed systems. Accordingly, we introduce the Spatiotemporal Tuples model, a natural adaptation of Linda model for physically deployed large-scale networks. Unlike prior research, spatiotemporal properties – expressing where and when a tuple should range and has to be deposited/retrieved – naturally turn into specifications of collective adaptive processes, to be carried on in cooperation by the devices filling the computational environment, and sustaining tuple operations in a resilient way, possibly even in mobile and faulty environments. Additionally, the model promotes decentralised implementations where tuples actually reside where they are issued, which is good for supporting peer-to-peer and mobile ad-hoc networks as well as privacy. In this paper, we (i) present and formalise the Spatiotemporal Tuples model, based on the unifying notion of computational space-time structure, (ii) provide an implementation in the ScaFi aggregate computing framework, turning tuple operations into aggregate processes, and finally (iii) provide evaluation through simulation and a rescue case study.
- Published
- 2021
7. Human COX7A2L Regulates Complex III Biogenesis and Promotes Supercomplex Organization Remodeling without Affecting Mitochondrial Bioenergetics
- Author
-
Antoni Barrientos, Thibaut Molinié, Flavia Fontanesi, Alba Timón-Gómez, Arnaud Mourier, Eva Nývltová, Rafael Pérez-Pérez, Austin Choi, Teresa Lobo-Jarne, and Cristina Ugalde
- Subjects
0301 basic medicine ,Bioenergetics ,Cell Respiration ,respirasomes ,mitochondrial respiratory chain ,Models, Biological ,Article ,Oxidative Phosphorylation ,General Biochemistry, Genetics and Molecular Biology ,Complex III biogenesis ,Electron Transport Complex IV ,Electron Transport Complex III ,supercomplexes ,03 medical and health sciences ,COX7A2L ,Stress, Physiological ,SCAFI ,Cell Line, Tumor ,Transcription Activator-Like Effector Nucleases ,Animals ,Humans ,Protein Isoforms ,complex III ,lcsh:QH301-705.5 ,Sequence Deletion ,Chemistry ,HEK 293 cells ,Carbon ,Mitochondria ,Cell biology ,Mice, Inbred C57BL ,Kinetics ,Protein Subunits ,HEK293 Cells ,030104 developmental biology ,Mitochondrial respiratory chain ,lcsh:Biology (General) ,Coenzyme Q – cytochrome c reductase ,Mutation ,Respirasome ,Energy Metabolism ,COX7RP ,Function (biology) ,Biogenesis - Abstract
SUMMARY The mitochondrial respiratory chain is organized in a dynamic set of supercomplexes (SCs). The COX7A2L protein is essential for mammalian SC III2+IV assembly. However, its function in respirasome (SCs I+III2+IVn) biogenesis remains controversial. To unambiguously determine the COX7A2L role, we generated COX7A2L-knockout (COX7A2L-KO) HEK293T and U87 cells. COX7A2L-KO cells lack SC III2+IV but have enhanced complex III steady-state levels, activity, and assembly rate, normal de novo complex IV biogenesis, and delayed respirasome formation. Nonetheless, the KOs have normal respire some steady-state levels, and only larger structures (SCs I1–2+III2+IV2-n or megacomplexes) were undetected. Functional substrate-driven competition assays showed normal mitochondrial respiration in COX7A2L-KO cells in standard and nutritional-, environmental-, and oxidative-stress-challenging conditions. We conclude that COX7A2L establishes a regulatory checkpoint for the biogenesis of CIII2 and specific SCs, but the COX7A2L-dependent MRC remodeling is essential neither to maintain mitochondrial bioenergetics nor to cope with acute cellular stresses., Graphical Abstract, In Brief The role of COX7A2L in mitochondrial respiratory chain supercomplex biogenesis and function remains controversial. By analyzing COX7A2L- knockout human cells, Lobo-Jarne et al. report that this protein promotes specific respiratory chain complex assembly and organization remodeling but does not affect mitochondrial bioenergetics in physiological, nutritional, or oxidative stress conditions.
- Published
- 2018
8. Ataxia Rating Scales-Psychometric Profiles, Natural History and Their Application in Clinical Trials.
- Author
-
Saute, Jonas, Donis, Karina, Serrano-Munuera, Carmen, Genis, David, Ramirez, Luís, Mazzetti, Pilar, Pérez, Luis, Latorre, Pilar, Sequeiros, Jorge, Matilla-Dueñas, Antoni, and Jardim, Laura
- Subjects
- *
ATAXIA , *PSYCHOMETRICS , *CLINICAL trials , *META-analysis , *MEDLINE , *PHYSIOLOGICAL therapeutics - Abstract
We aimed to perform a comprehensive systematic review of the existing ataxia scales. We described the disorders for which the instruments have been validated and used, the time spent in its application, its validated psychometric properties, and their use in studies of natural history and clinical trials. A search from 1997 onwards was performed in the MEDLINE, LILACS, and Cochrane databases. The web sites ClinicalTrials.gov and Orpha.net were also used to identify the endpoints used in ongoing randomized clinical trials. We identified and described the semiquantitative ataxia scales (ICARS, SARA, MICARS, BARS); semiquantitative ataxia and non-ataxia scales (UMSARS, FARS, NESSCA); a semiquantitative non-ataxia scale (INAS); quantitative ataxia scales (CATSYS 2000, AFCS, CCFS and CCFSw, and SCAFI); and the self-performed ataxia scale (FAIS). SARA and ICARS were the best studied and validated so far, and their reliability sustain their use. Ataxia and non-ataxia scores will probably provide a better view of the overall disability in long-term trials and studies of natural history. Up to now, no clear advantage has been disclosed for any of them; however, we recommend the use of specific measurements of gait since gait ataxia is the first significant manifestation in the majority of ataxia disorders and comment on the best scales to be used in specific ataxia forms. Quantitative ataxia scales will be needed to speed up evidence from phase II clinical trials, from trials focused on the early phase of diseases, and for secondary endpoints in phase III trials. Finally, it is worth remembering that estimation of the actual minimal clinically relevant difference is still lacking; this, together with changes in quality of life, will probably be the main endpoints to measure in future therapeutic studies. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
9. The progression rate of spinocerebellar ataxia type 2 changes with stage of disease
- Author
-
Amanda Senna Pereira dos Santos, Vanessa Bielefeldt Leotti, Lucas Dorídio Locks-Coelho, Eduardo Preusser de Mattos, Marina Coutinho Augustin, Laura Bannach Jardim, Maria Luiza Saraiva-Pereira, José Luiz Pedroso, Suzi Alves Camey, Orlando G P Barsottini, Fernando Regla Vargas, Estela da Rosa Reckziegel, Gabriel Vasata Furtado, and Thais Lampert Monte
- Subjects
0301 basic medicine ,Male ,Pediatrics ,SARA ,lcsh:Medicine ,Disease ,Severity of Illness Index ,0302 clinical medicine ,DEFICITS ,História natural ,Pharmacology (medical) ,Prospective Studies ,NESSCA ,Cognitive decline ,Age of Onset ,Genetics (clinical) ,RISK ,HUNTINGTON DISEASE ,medicine.diagnostic_test ,Parkinsonism ,Ataxias espinocerebelares ,General Medicine ,Middle Aged ,CEREBELLAR ATAXIAS ,Cohort ,Spinocerebellar ataxia ,Disease Progression ,SURVIVAL ,Female ,medicine.symptom ,Adult ,medicine.medical_specialty ,Ataxia ,Natural history ,Neurological examination ,03 medical and health sciences ,SCA3 ,SCAFI ,SCORE ,medicine ,Journal Article ,Humans ,Spinocerebellar Ataxias ,COHORT ,Spinocerebellar ataxia type 2 ,business.industry ,Research ,lcsh:R ,Amyotrophy ,medicine.disease ,030104 developmental biology ,SEVERITY ,business ,030217 neurology & neurosurgery ,Progressão da doença ,Progression rate - Abstract
Background Spinocerebellar ataxia type 2 (SCA2) affects several neurological structures, giving rise to multiple symptoms. However, only the natural history of ataxia is well known, as measured during the study duration. We aimed to describe the progression rate of ataxia, by the Scale for the Assessment and Rating of Ataxia (SARA), as well as the progression rate of the overall neurological picture, by the Neurological Examination Score for Spinocerebellar Ataxias (NESSCA), and not only during the study duration but also in a disease duration model. Comparisons between these models might allow us to explore whether progression is linear during the disease duration in SCA2; and to look for potential modifiers. Results Eighty–eight evaluations were prospectively done on 49 symptomatic subjects; on average (SD), study duration and disease duration models covered 13 (2.16) months and 14 (6.66) years of individuals’ life, respectively. SARA progressed 1.75 (CI 95%: 0.92–2.57) versus 0.79 (95% CI 0.45 to 1.14) points/year in the study duration and disease duration models. NESSCA progressed 1.45 (CI 95%: 0.74–2.16) versus 0.41 (95% CI 0.24 to 0.59) points/year in the same models. In order to explain these discrepancies, the progression rates of the study duration model were plotted against disease duration. Then an acceleration was detected after 10 years of disease duration: SARA scores progressed 0.35 before and 2.45 points/year after this deadline (p = 0.013). Age at onset, mutation severity, and presence of amyotrophy, parkinsonism, dystonic manifestations and cognitive decline at baseline did not influence the rate of disease progression. Conclusions NESSCA and SARA progression rates were not constant during disease duration in SCA2: early phases of disease were associated with slower progressions. Modelling of future clinical trials on SCA2 should take this phenomenon into account, since disease duration might impact on inclusion criteria, sample size, and study duration. Our database is available online and accessible to future studies aimed to compare the present data with other cohorts. Electronic supplementary material The online version of this article (10.1186/s13023-017-0725-y) contains supplementary material, which is available to authorized users.
- Published
- 2018
10. Human COX7A2L Regulates Complex III Biogenesis and Promotes Supercomplex Organization Remodeling without Affecting Mitochondrial Bioenergetics.
- Author
-
Lobo-Jarne, Teresa, Nývltová, Eva, Pérez-Pérez, Rafael, Timón-Gómez, Alba, Molinié, Thibaut, Choi, Austin, Mourier, Arnaud, Fontanesi, Flavia, Ugalde, Cristina, and Barrientos, Antoni
- Abstract
Summary The mitochondrial respiratory chain is organized in a dynamic set of supercomplexes (SCs). The COX7A2L protein is essential for mammalian SC III 2 +IV assembly. However, its function in respirasome (SCs I+III 2 +IV n) biogenesis remains controversial. To unambiguously determine the COX7A2L role, we generated COX7A2L -knockout (COX7A2L -KO) HEK293T and U87 cells. COX7A2L -KO cells lack SC III 2 +IV but have enhanced complex III steady-state levels, activity, and assembly rate, normal de novo complex IV biogenesis, and delayed respirasome formation. Nonetheless, the KOs have normal respirasome steady-state levels, and only larger structures (SCs I 1-2 +III 2 +IV 2-n or megacomplexes) were undetected. Functional substrate-driven competition assays showed normal mitochondrial respiration in COX7A2L -KO cells in standard and nutritional-, environmental-, and oxidative-stress-challenging conditions. We conclude that COX7A2L establishes a regulatory checkpoint for the biogenesis of CIII 2 and specific SCs, but the COX7A2L-dependent MRC remodeling is essential neither to maintain mitochondrial bioenergetics nor to cope with acute cellular stresses. Graphical Abstract Highlights • COX7A2L -knockout human cells lack SC III 2 +IV and some megacomplexes • COX7A2L -KO cells have enhanced CIII 2 steady-state levels and assembly rate • COX7A2L -KO cells have slower respirasome assembly but normal steady-state levels • COX7A2L-dependent MRC remodeling does not affect mitochondrial bioenergetics The role of COX7A2L in mitochondrial respiratory chain supercomplex biogenesis and function remains controversial. By analyzing COX7A2L -knockout human cells, Lobo-Jarne et al. report that this protein promotes specific respiratory chain complex assembly and organization remodeling but does not affect mitochondrial bioenergetics in physiological, nutritional, or oxidative stress conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
11. Analysis of Mitochondrial Respiratory Chain Supercomplexes Using Blue Native Polyacrylamide Gel Electrophoresis (BN-PAGE).
- Author
-
Jha P, Wang X, and Auwerx J
- Subjects
- Animals, Blotting, Western, Electron Transport Chain Complex Proteins isolation & purification, Mice, Electron Transport Chain Complex Proteins metabolism, Mitochondria metabolism, Native Polyacrylamide Gel Electrophoresis methods
- Abstract
Mitochondria are cellular organelles that harvest energy in the form of ATP through a process termed oxidative phosphorylation (OXPHOS), which occurs via the protein complexes of the electron transport chain (ETC). In recent years it has become unequivocally clear that mitochondrial complexes of the ETC are not static entities in the inner mitochondrial membrane. These complexes are dynamic and in mammals they aggregate in different stoichiometric combinations to form supercomplexes (SCs) or respirasomes. It has been proposed that the net respiration is more efficient via SCs than via isolated complexes. However, it still needs to be determined whether the activity of a particular SC is associated with a disease etiology. Here we describe a simplified method to visualize and assess in-gel activity of SCs and the individual complexes with good resolution using blue native polyacrylamide gel electrophoresis (BN-PAGE)., (Copyright © 2016 John Wiley & Sons, Inc.)
- Published
- 2016
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.