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Adding manure to croplands restores carbon and nutrients in depleted soils, while addressing a waste disposal need. This practice depends on the abundance and activity of microbial communities to break down manure inputs, which provide carbon for microbial growth and release nutrients for plant and microbial uptake. In a 2-year field study, we measured changes to soil physicochemical properties and microbial community composition in a conventional rotation of summer sileage corn and winter wheat. Three ratios of manure to mineral N fertilizer were used: all manure (100% of plant N from manure), mixed (50% plant N from by manure and 50% from mineral fertilizer), and all mineral (100% plant N from mineral fertilizer). Yields of corn and wheat were similar across treatments. Soil microbial community dissimilarity increased with higher ratios of application, suggesting a dose-dependent relationship between manure application and microbial community composition. Both microbial biomass and dissolved organic carbon showed the greatest response immediately following manure application, then decreased until the next application. The Shannon index increased shortly after manure application, with the largest increase observed in soils receiving manure input. Many of the taxa that increased in relative abundance following manure application were specifically taxa known to be present in manure and not common or present in soil before manure application. Microbial community changes following manure application were transitory, indicating that without continual inputs of resources, these alterations are not maintained. This was in contrast to microbial biomass which slowly increased in size over the 2-year study period. Better understanding of how manure interacts with microbial communities will help in developing better nutrient management practices and help reduce our reliance on mineral fertilizers.

Soil organic amendments in agricultural production can benefit crop production and a wide range of soil properties, including soil aggregation. Soil aggregate formation is largely driven by microbial activities, and can in-turn influence microbial communities by generating distinct microbial habitats, as well as associated impacts on water and nutrient dynamics. We investigated the long-term effects of two fertilizer management strategies (poultry manure compost vs. mineral fertilizer) and biochar amendment (0 vs. 10 t ha−1 walnut shell biochar, 900 °C pyrolysis temperature, by-product of gasification) on soil aggregation, soil organic C, and microbial community dynamics in water-stable aggregate fractions in corn-tomato rotations. Using wet-sieving, soils (0–15 cm) were divided into four size fractions: large macroaggregates (2000–8000 μm), small macroaggregates (250–2000 μm), microaggregates (53–250 μm) and silt and clay (

Composting is an effective strategy to process agricultural and urban waste into forms that may be beneficial to crops. The objectives of this orchard field study were to characterize how a dairy manure compost and a food waste compost influenced: (1) soil nitrogen and carbon pools, (2) bacterial and nematode soil food webs and (3) tree growth and leaf N. The effects of composts were compared with fertilized and unfertilized control plots over two years in a newly planted almond orchard. Both dairy manure compost and food waste compost increased soil organic matter pools, as well as soil nitrate and ammonium at certain time points. Both composts also distinctly altered bacterial communities after application, specifically those groups with carbon degrading potential, and increased populations of bacterial feeding nematodes, although in different timeframes. Unique correlations were observed between nematode and bacterial groups within compost treatments that were not present in controls. Food waste compost increased trunk diameters compared to controls and had greater relative abundance of herbivorous root tip feeding nematodes. Results suggest that recycled waste composts contribute to biologically based nitrogen cycling and can increase tree growth, mainly within the first year after application.

Potato leafroll virus (PLRV), genus Polerovirus, family Luteoviridae, is a major pathogen of potato worldwide. PLRV is transmitted among host plants by aphids in a circulative–nonpropagative manner. Previous studies have demonstrated that PLRV infection increases aphid fecundity on, and attraction to, infected plants as compared to controls. However, the molecular mechanisms mediating this relationship are still poorly understood. In this study, we measured the impact of PLRV infection on plant–aphid interactions and plant chemistry in two hosts: Solanum tuberosum and Nicotiana benthamiana. Our study demonstrates that PLRV infection attenuates the induction of aphid‐induced jasmonic acid and ethylene in S. tuberosum and N. benthamiana. Using transient expression experiments, insect bioassays and chemical analysis, we show that expression of three PLRV proteins (P0, P1, and P7) mediate changes in plant–aphid interactions and inhibition of aphid‐induced jasmonic acid and ethylene in N. benthamiana. This study enhances our understanding of the plant‐vector‐pathogen interface by elucidating new mechanisms by which plant viruses transmitted in a circulative manner can manipulate plant hosts. Our study demonstrates that Potato leafroll virus inhibits the induction of aphid‐induced phytohormones using at least three viral proteins (P0, P1, and P7). This is the first time that individual viral proteins of a circulative–nonpropagative virus have been shown to alter host physiology and, in turn, aphid behaviour and fecundity. [ABSTRACT FROM AUTHOR]