26 results on '"Saya, R."'
Search Results
2. Multimodal Machine Learning in Precision Health.
- Author
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Adrienne S. Kline, Hanyin Wang, Yikuan Li, Saya R. Dennis, Meghan Hutch, Zhenxing Xu, Fei Wang 0001, Feixiong Cheng, and Yuan Luo 0001
- Published
- 2022
- Full Text
- View/download PDF
3. Multimodal machine learning in precision health: A scoping review.
- Author
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Adrienne S. Kline, Hanyin Wang, Yikuan Li, Saya R. Dennis, Meghan Hutch, Zhenxing Xu, Fei Wang 0001, Feixiong Cheng, and Yuan Luo 0001
- Published
- 2022
- Full Text
- View/download PDF
4. Cytotoxic T lymphocytes from cattle immunized against Theileria parva exhibit pronounced cross-reactivity among different strain-specific epitopes of the Tp1 antigen
- Author
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Steinaa, L., Saya, R., Awino, E., and Toye, P.
- Published
- 2012
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5. Machine Learning Prediction of Parkinson’s Disease Onset and Subtype Using Germline Variants
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Dennis, Saya R, primary, Simuni, Tanya, additional, and Luo, Yuan, additional
- Published
- 2021
- Full Text
- View/download PDF
6. An Ad/MVA vectored Theileria parva antigen induces schizont-specific CD8+ central memory T cells and confers partial protection against a lethal challenge
- Author
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Svitek, N, Saya, R, Awino, E, Munyao, S, Muriuki, R, Njoroge, T, Pellé, R, Ndiwa, N, Poole, J, Gilbert, S, Nene, V, and Steinaa, L
- Subjects
lcsh:Immunologic diseases. Allergy ,parasitic diseases ,lcsh:RC581-607 ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 - Abstract
The parasite Theileria parva is the causative agent of East Coast fever (ECF), one of the most serious cattle diseases in sub-Saharan Africa, and directly impacts smallholder farmers' livelihoods. There is an efficient live-parasite vaccine, but issues with transmission of vaccine strains, need of a cold chain, and antibiotics limit its utilization. This has fostered research towards subunit vaccination. Cytotoxic T lymphocytes (CTL) are crucial in combating the infection by lysing T. parva-infected cells. Tp1 is an immunodominant CTL antigen, which induces Tp1-specific responses in 70-80% of cattle of the A18 or A18v haplotype during vaccination with the live vaccine. In this study, human adenovirus serotype 5 (HAd5) and modified vaccinia Ankara (MVA) were assessed for their ability to induce Tp1-specific immunity. Both viral vectors expressing the Tp1 antigen were inoculated in cattle by a heterologous prime-boost vaccination regimen. All 15 animals responded to Tp1 as determined by ELISpot. Of these, 14 reacted to the known Tp1 epitope, assayed by ELISpot and tetramer analyses, with CTL peaking 1-week post-MVA boost. Eleven animals developed CTL with specific cytotoxic activity towards peripheral blood mononuclear cells (PBMC) pulsed with the Tp1 epitope. Moreover, 36% of the animals with a Tp1 epitope-specific response survived a lethal challenge with T. parva 5 weeks post-MVA boost. Reduction of the parasitemia correlated with increased percentages of central memory lymphocytes in the Tp1 epitope-specific CD8+ populations. These results indicate that Tp1 is a promising antigen to include in a subunit vaccine and central memory cells are crucial for clearing the parasite.
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- 2018
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7. A Predictive Model for Parkinson’s Disease Reveals Candidate Gene Sets for Progression Subtype
- Author
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Dennis, Saya R., primary, Simuni, Tanya, additional, and Luo, Yuan, additional
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- 2020
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8. Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis
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Madeleine J. Oudin, Vasilena Gocheva, Charles A. Whittaker, Roderick T. Bronson, Tyler Jacks, Carman Man-Chung Li, Sheng Rong Ng, Shi Yun Wang, Arjun Bhutkar, Eric L. Snyder, Frank B. Gertler, Saya R. Date, Massachusetts Institute of Technology. Department of Biology, Massachusetts Institute of Technology. Department of Mechanical Engineering, Koch Institute for Integrative Cancer Research at MIT, Li, Carman Man-Chung, Gocheva, Vasilena, Oudin, Madeleine Julie, Bhutkar, Arjun (AJ), Wang, Shi Yun, Date, Saya R., Ng, Sheng Rong, Whittaker, Charles A., Gertler, Frank, and Jacks, Tyler E.
- Subjects
Lung Neoplasms ,Thyroid Nuclear Factor 1 ,Mice, Nude ,Adenocarcinoma of Lung ,Adenocarcinoma ,Proto-Oncogene Mas ,Metastasis ,Animals, Genetically Modified ,Mice ,HMGA2 ,Cell Line, Tumor ,Genetics ,medicine ,Gene silencing ,Animals ,Humans ,CDX2 Transcription Factor ,Gene Silencing ,Neoplasm Metastasis ,CDX2 ,Lung cancer ,Homeodomain Proteins ,Gene knockdown ,biology ,Nuclear Proteins ,respiratory system ,medicine.disease ,digestive system diseases ,Gene Expression Regulation, Neoplastic ,Gene Knockdown Techniques ,Invadopodia ,embryonic structures ,biology.protein ,Cancer research ,Hepatocyte Nuclear Factor 3-beta ,Developmental Biology ,Research Paper ,Transcription Factors - Abstract
Despite the fact that the majority of lung cancer deaths are due to metastasis, the molecular mechanisms driving metastatic progression are poorly understood. Here, we present evidence that loss of Foxa2 and Cdx2 synergizes with loss of Nkx2-1 to fully activate the metastatic program. These three lineage-specific transcription factors are consistently down-regulated in metastatic cells compared with nonmetastatic cells. Knockdown of these three factors acts synergistically and is sufficient to promote the metastatic potential of nonmetastatic cells to that of naturally arising metastatic cells in vivo. Furthermore, silencing of these three transcription factors is sufficient to account for a significant fraction of the gene expression differences between the nonmetastatic and metastatic states in lung adenocarcinoma, including up-regulated expression of the invadopodia component Tks5[subscript long], the embryonal proto-oncogene Hmga2, and the epithelial-to-mesenchymal mediator Snail. Finally, analyses of tumors from a genetically engineered mouse model and patients show that low expression of Nkx2-1, Foxa2, and Cdx2 strongly correlates with more advanced tumors and worse survival. Our findings reveal that a large part of the complex transcriptional network in metastasis can be controlled by a small number of regulatory nodes that function redundantly, and loss of multiple nodes is required to fully activate the metastatic program., National Cancer Institute (U.S.) (Cancer Center Support Grant P30-CA14051), Howard Hughes Medical Institute, National Institutes of Health (U.S.) (Grant 5-U01-CA84306), United States. Dept. of Defense. Breast Cancer Research Program (U.S.) (Grant W81XWH-12-1-0031), Ludwig Center for Molecular Oncology
- Published
- 2015
9. Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis
- Author
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Massachusetts Institute of Technology. Department of Biology, Massachusetts Institute of Technology. Department of Mechanical Engineering, Koch Institute for Integrative Cancer Research at MIT, Li, Carman Man-Chung, Gocheva, Vasilena, Oudin, Madeleine Julie, Bhutkar, Arjun (AJ), Wang, Shi Yun, Date, Saya R., Ng, Sheng Rong, Whittaker, Charles A., Gertler, Frank, Jacks, Tyler E., Bronson, Roderick T., Snyder, Eric L., Bhutkar, Arjun, Jacks, Tyler E, Massachusetts Institute of Technology. Department of Biology, Massachusetts Institute of Technology. Department of Mechanical Engineering, Koch Institute for Integrative Cancer Research at MIT, Li, Carman Man-Chung, Gocheva, Vasilena, Oudin, Madeleine Julie, Bhutkar, Arjun (AJ), Wang, Shi Yun, Date, Saya R., Ng, Sheng Rong, Whittaker, Charles A., Gertler, Frank, Jacks, Tyler E., Bronson, Roderick T., Snyder, Eric L., Bhutkar, Arjun, and Jacks, Tyler E
- Abstract
Despite the fact that the majority of lung cancer deaths are due to metastasis, the molecular mechanisms driving metastatic progression are poorly understood. Here, we present evidence that loss of Foxa2 and Cdx2 synergizes with loss of Nkx2-1 to fully activate the metastatic program. These three lineage-specific transcription factors are consistently down-regulated in metastatic cells compared with nonmetastatic cells. Knockdown of these three factors acts synergistically and is sufficient to promote the metastatic potential of nonmetastatic cells to that of naturally arising metastatic cells in vivo. Furthermore, silencing of these three transcription factors is sufficient to account for a significant fraction of the gene expression differences between the nonmetastatic and metastatic states in lung adenocarcinoma, including up-regulated expression of the invadopodia component Tks5[subscript long], the embryonal proto-oncogene Hmga2, and the epithelial-to-mesenchymal mediator Snail. Finally, analyses of tumors from a genetically engineered mouse model and patients show that low expression of Nkx2-1, Foxa2, and Cdx2 strongly correlates with more advanced tumors and worse survival. Our findings reveal that a large part of the complex transcriptional network in metastasis can be controlled by a small number of regulatory nodes that function redundantly, and loss of multiple nodes is required to fully activate the metastatic program., National Cancer Institute (U.S.) (Cancer Center Support Grant P30-CA14051), Howard Hughes Medical Institute, National Institutes of Health (U.S.) (Grant 5-U01-CA84306), United States. Dept. of Defense. Breast Cancer Research Program (U.S.) (Grant W81XWH-12-1-0031), Ludwig Center for Molecular Oncology
- Published
- 2016
10. Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis
- Author
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Li, Carman Man-Chung, primary, Gocheva, Vasilena, additional, Oudin, Madeleine J., additional, Bhutkar, Arjun, additional, Wang, Shi Yun, additional, Date, Saya R., additional, Ng, Sheng Rong, additional, Whittaker, Charles A., additional, Bronson, Roderick T., additional, Snyder, Eric L., additional, Gertler, Frank B., additional, and Jacks, Tyler, additional
- Published
- 2015
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11. Electrical Design Changes at Indian Point No. 3 Nutclear Generating Station.
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Szabados, P., Saya, R. A., and Duggan, P. M.
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- 1974
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12. An accessory role for the diacylglycerol moiety of variable surface glycoprotein of African trypanosomes in the stimulation of bovine monocytes
- Author
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Sileghem, M., Saya, R., Grab, D. J., and Naessens, J.
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- 2001
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13. Secretion of co-stimulatory cytokines by monocytes and macrophages during infection with Trypanosoma (Nannomonas) congolense in susceptible and tolerant cattle
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Sileghem, M. R., Flynn, J. N., Saya, R., and Williams, D. J. L.
- Published
- 1993
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14. Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis.
- Author
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Man-Chung Li, Carman, Gocheva, Vasilena, Oudin, Madeleine J., Bhutkar, Arjun, Shi Yun Wang, Date, Saya R., Sheng Rong Ng, Whittaker, Charles A., Bronson, Roderick T., Snyder, Eric L., Gertler, Frank B., and Jacks, Tyler
- Subjects
- *
MOLECULAR interactions , *LUNG cancer , *METASTASIS , *GENE regulatory networks , *GENETIC code , *LABORATORY mice - Abstract
Despite the fact that the majority of lung cancer deaths are due to metastasis, the molecular mechanisms driving metastatic progression are poorly understood. Here, we present evidence that loss of Foxa2 and Cdx2 synergizes with loss of Nkx2-1 to fully activate the metastatic program. These three lineage-specific transcription factors are consistently down-regulated in metastatic cells compared with nonmetastatic cells. Knockdown of these three factors acts synergistically and is sufficient to promote the metastatic potential of nonmetastatic cells to that of naturally arising metastatic cells in vivo. Furthermore, silencing of these three transcription factors is sufficient to account for a significant fraction of the gene expression differences between the nonmetastatic and metastatic states in lung adenocarcinoma, including up-regulated expression of the invadopodia component Tks5long, the embryonal proto-oncogene Hmga2, and the epithelial-to-mesenchymal mediator Snail. Finally, analyses of tumors from a genetically engineered mouse model and patients show that low expression of Nkx2-1, Foxa2, and Cdx2 strongly correlates with more advanced tumors and worse survival. Our findings reveal that a large part of the complex transcriptional network in metastasis can be controlled by a small number of regulatory nodes that function redundantly, and loss of multiple nodes is required to fully activate the metastatic program. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
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15. Systematic Determination of TCR-Antigen and Peptide-MHC Binding Kinetics among Field Variants of a Theileria parva Polymorphic CTL Epitope.
- Author
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Svitek N, Saya R, Zhang H, Nene V, and Steinaa L
- Subjects
- Amino Acid Sequence, Animals, Antigens, Protozoan immunology, Cattle, Cattle Diseases immunology, Cattle Diseases parasitology, Cell Line, Epitopes, T-Lymphocyte immunology, Immunity, Cellular immunology, Theileriasis parasitology, Histocompatibility Antigens Class I immunology, Receptors, Antigen, T-Cell immunology, T-Lymphocytes, Cytotoxic immunology, Theileria parva immunology, Theileriasis immunology
- Abstract
CTLs are known to contribute to immunity toward Theileria parva , the causative agent of East Coast fever. The Tp9
67-75 CTL epitope from the Muguga strain of T. parva is polymorphic in other parasite strains. Identifying the amino acids important for MHC class I binding, as well as TCR recognition of epitopes, can allow the strategic selection of Ags to induce cellular immunity toward T. parva In this study, we characterized the amino acids important for MHC class I binding and TCR recognition in the Tp967-75 epitope using alanine scanning and a series of variant peptide sequences to probe these interactions. In a peptide-MHC class I binding assay, we found that the amino acids at positions 1, 2, and 3 were critical for binding to its restricting MHC class I molecule BoLA-1*023:01. With IFN-γ ELISPOT and peptide-MHC class I Tet staining assays on two parasite-specific bovine CTL lines, we showed that amino acids at positions 5-8 in the epitope were required for TCR recognition. Only two of eight naturally occurring polymorphic Tp9 epitopes were recognized by both CTLs. Finally, using a TCR avidity assay, we found that a higher TCR avidity was associated with a stronger functional response toward one of two variants recognized by the CTL. These data add to the growing knowledge on the cross-reactivity of epitope-specific CTLs and specificities that may be required in the selection of Ags in the design of a wide-spectrum vaccine for East Coast fever., (Copyright © 2022 The Authors.)- Published
- 2022
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16. Analysis of the Cellular Immune Responses to Vaccines.
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Svitek N, Taracha ELN, Saya R, Awino E, Nene V, and Steinaa L
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- Animals, Cattle, Immunity, Cellular, Peptides, T-Lymphocytes, Cytotoxic, Epitopes, T-Lymphocyte, Vaccines
- Abstract
Flow cytometry, enzyme-linked immunospot (ELISpot), and cellular cytotoxicity assays are powerful tools for studying the cellular immune response toward intracellular pathogens and vaccines in livestock species. Lymphocytes from immunized animals can be purified using Ficoll-Paque density gradient centrifugation and evaluated for their antigen specificity or reactivity toward a vaccine. Here, we describe staining of bovine lymphocytes with peptide (p)-MHC class I tetramers and antibodies specific toward cellular activation markers for evaluation by multiparametric flow cytometry, as well as interferon (IFN)-γ ELISpot and cytotoxicity using chromium (
51 Cr) release assays. A small component on the use of immunoinformatics for fine-tuning the identification of a minimal CTL epitope is included, and a newly developed and simple assay to measure TCR avidity., (© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)- Published
- 2022
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17. Synergistic Effect of Two Nanotechnologies Enhances the Protective Capacity of the Theileria parva Sporozoite p67C Antigen in Cattle.
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Lacasta A, Mody KT, De Goeyse I, Yu C, Zhang J, Nyagwange J, Mwalimu S, Awino E, Saya R, Njoroge T, Muriuki R, Ndiwa N, Poole EJ, Zhang B, Cavallaro A, Mahony TJ, Steinaa L, Mitter N, and Nene V
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- Animals, Antibodies, Protozoan blood, Cattle, Hepatitis B virus chemistry, Hepatitis B virus genetics, Mice, Mineral Oil administration & dosage, Nanoparticles chemistry, Protozoan Proteins genetics, Protozoan Vaccines genetics, RAW 264.7 Cells, Silicon Dioxide chemistry, Ticks, Vaccination, Vaccines, Subunit, Viral Core Proteins chemistry, Viral Core Proteins genetics, CD4-Positive T-Lymphocytes immunology, Nanotechnology methods, Protozoan Vaccines immunology, Theileria parva physiology, Theileriasis immunology, Tick-Borne Diseases immunology
- Abstract
East Coast fever (ECF), caused by Theileria parva , is the most important tick-borne disease of cattle in sub-Saharan Africa. Practical disadvantages associated with the currently used live-parasite vaccine could be overcome by subunit vaccines. An 80-aa polypeptide derived from the C-terminal portion of p67, a sporozoite surface Ag and target of neutralizing Abs, was the focus of the efforts on subunit vaccines against ECF and subjected to several vaccine trials with very promising results. However, the vaccination regimen was far from optimized, involving three inoculations of 450 μg of soluble p67C (s-p67C) Ag formulated in the Seppic adjuvant Montanide ISA 206 VG. Hence, an improved formulation of this polypeptide Ag is needed. In this study, we report on two nanotechnologies that enhance the bovine immune responses to p67C. Individually, HBcAg-p67C (chimeric hepatitis B core Ag virus-like particles displaying p67C) and silica vesicle (SV)-p67C (s-p67C adsorbed to SV-140-C
18 , octadecyl-modified SVs) adjuvanted with ISA 206 VG primed strong Ab and T cell responses to p67C in cattle, respectively. Coimmunization of cattle ( Bos taurus ) with HBcAg-p67C and SV-p67C resulted in stimulation of both high Ab titers and CD4 T cell response to p67C, leading to the highest subunit vaccine efficacy we have achieved to date with the p67C immunogen. These results offer the much-needed research depth on the innovative platforms for developing effective novel protein-based bovine vaccines to further the advancement., (Copyright © 2021 The Authors.)- Published
- 2021
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18. Immunization with one Theileria parva strain results in similar level of CTL strain-specificity and protection compared to immunization with the three-component Muguga cocktail in MHC-matched animals.
- Author
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Steinaa L, Svitek N, Awino E, Njoroge T, Saya R, Morrison I, and Toye P
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- Animals, Cattle, Genes, MHC Class I immunology, Haplotypes, Major Histocompatibility Complex immunology, Protozoan Vaccines immunology, Species Specificity, T-Lymphocytes, Cytotoxic drug effects, Theileriasis immunology, Protozoan Vaccines pharmacology, T-Lymphocytes, Cytotoxic immunology, Theileria parva immunology, Theileriasis prevention & control
- Abstract
Background: The tick-borne protozoan parasite Theileria parva causes a usually fatal cattle disease known as East Coast fever in sub-Saharan Africa, with devastating consequences for poor small-holder farmers. Immunity to T. parva, believed to be mediated by a cytotoxic T lymphocyte (CTL) response, is induced following natural infection and after vaccination with a live vaccine, known as the Infection and Treatment Method (ITM). The most commonly used version of ITM is a combination of parasites derived from three isolates (Muguga, Kiambu 5 and Serengeti-transformed), known as the "Muguga cocktail". The use of a vaccine comprising several strains is believed to be required to induce a broad immune response effective against field challenge. In this study we investigated whether immunization with the Muguga cocktail induces a broader CTL response than immunization with a single strain (Muguga)., Results: Four MHC haplotype-matched pairs of cattle were immunized with either the trivalent Muguga cocktail or the single Muguga strain. CTL specificity was assessed on a panel of five different strains, and clonal responses to these strains were also assessed in one of the MHC-matched pairs. We did not find evidence for a broader CTL response in animals immunized with the Muguga cocktail compared to those immunized with the Muguga strain alone, in either the bulk or clonal CTL analyses. This was supported by an in vivo trial in which all vaccinated animals survived challenge with a lethal dose of the Muguga cocktail vaccine stabilate., Conclusion: We did not observe any substantial differences in the immunity generated from animals immunized with either Muguga alone or the Muguga cocktail in the animals tested here, corroborating earlier results showing limited antigenic diversity in the Muguga cocktail. These results may warrant further field studies using single T. parva strains as future vaccine candidates.
- Published
- 2018
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19. Immune parameters to p67C antigen adjuvanted with ISA206VG correlate with protection against East Coast fever.
- Author
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Lacasta A, Mwalimu S, Kibwana E, Saya R, Awino E, Njoroge T, Poole J, Ndiwa N, Pelle R, Nene V, and Steinaa L
- Subjects
- Animals, Antibodies, Neutralizing blood, Antibodies, Neutralizing immunology, Antibodies, Protozoan blood, Antibodies, Protozoan immunology, Antibody Specificity immunology, Cattle, Immunization, Immunization, Secondary, Protozoan Vaccines administration & dosage, T-Lymphocyte Subsets immunology, T-Lymphocyte Subsets metabolism, Adjuvants, Immunologic, Antigens, Protozoan immunology, Protozoan Vaccines immunology, Theileria immunology, Theileriasis prevention & control
- Abstract
East Coast fever (ECF) is a lymphoproliferative disease caused by the tick-transmitted protozoan parasite Theileria parva. ECF is one of the most serious cattle tick-borne diseases in Sub-Saharan Africa. We have previously demonstrated that three doses of the C-terminal part of the sporozoite protein p67 (p67C) adjuvanted with ISA206VG confers partial protection against ECF at a herd level. We have tested the efficacy of two doses of this experimental vaccine, as reducing the vaccination regimen would facilitate its deployment in the field. We reconfirm that three antigen doses gave a significant level of protection to severe disease (46%, ECF score < 6) when compared with the control group, while two doses did not (23%). Animals receiving three doses of p67C developed higher antibody titers and CD4
+ T-cell proliferation indices, than those which received two doses. A new panel of immune parameters were tested in order to identify factors correlating with protection: CD4+ proliferation index, total IgG, IgG1, IgG2 and IgM half maximal titers and neutralization capacity of the sera with and without complement. We show that some of the cellular and humoral immune responses provide preliminary correlates of protection., (Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2018
- Full Text
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20. Cytotoxic T lymphocytes from cattle sharing the same MHC class I haplotype and immunized with live Theileria parva sporozoites differ in antigenic specificity.
- Author
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Steinaa L, Svitek N, Awino E, Saya R, and Toye P
- Subjects
- Animals, Haplotypes, Kenya, Male, Antigens, Protozoan immunology, Cattle blood, Cattle genetics, Cattle immunology, Cattle Diseases prevention & control, Epitopes immunology, Genes, MHC Class I genetics, T-Lymphocytes, Cytotoxic immunology, Theileria parva immunology, Theileriasis prevention & control
- Abstract
Objectives: The objective of this study was to assess whether cytotoxic T cells (CTL) generated by the live vaccine, known as "ITM Muguga cocktail", which is used for the cattle disease East Cost fever (ECF) in Sub-Saharan Africa, showed a broad reactivity against many different strains of the causative parasite Theileria parva. We also assessed whether immune responses were similar in cattle expressing the same MHC class I haplotypes., Results: The antigenic specificity of CTL from MHC class I-matched cattle vaccinated with the Muguga cocktail were different. Three cattle of MHC class I haplotype A18, one A18/A19 and two haploidentical (A18v/A12) animals, showed differential recognition of autologous cells infected with a panel of T. parva isolates. This could have implications in the field where certain strains could break through the vaccine. Furthermore, neither of the haploidentical cattle recognized the CTL epitope (Tp1
214-224 ), presented by the A18 haplotype, in contrast to the third animal, showing differences in immunodominance in animals of the same haplotype A18. This suggests that the CTL specificities following immunization with the Muguga cocktail can vary even between haploidentical individuals and that some parasite strains may break through immunity generated by the Muguga cocktail.- Published
- 2018
- Full Text
- View/download PDF
21. Analysis of the Cellular Immune Responses to Vaccines.
- Author
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Svitek N, Taracha EL, Saya R, Awino E, Nene V, and Steinaa L
- Subjects
- Amino Acid Sequence genetics, Animals, Cattle, Epitopes, T-Lymphocyte immunology, Immunity, Cellular genetics, Livestock virology, Peptides immunology, T-Lymphocytes, Cytotoxic immunology, Enzyme-Linked Immunospot Assay methods, Flow Cytometry methods, Immunity, Cellular immunology, Vaccines immunology
- Abstract
Flow cytometry, enzyme-linked immunospot (ELISpot) and cellular cytotoxicity assays are powerful tools for studying the cellular immune response towards intracellular pathogens and vaccines in livestock species. Lymphocytes from immunized animals can be purified using Ficoll-Paque density gradient centrifugation and evaluated for their antigen specificity or reactivity towards a vaccine. Here, we describe staining of bovine lymphocytes with peptide (p)-MHC class I tetramers and antibodies specific towards cellular activation markers for evaluation by multiparametric flow cytometry, as well as interferon (IFN)-γ ELISpot and cytotoxicity using chromium ((51)Cr) release assays. A small component on the use of immunoinformatics for fine-tuning the identification of a minimal CTL epitope is included.
- Published
- 2016
- Full Text
- View/download PDF
22. Use of "one-pot, mix-and-read" peptide-MHC class I tetramers and predictive algorithms to improve detection of cytotoxic T lymphocyte responses in cattle.
- Author
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Svitek N, Hansen AM, Steinaa L, Saya R, Awino E, Nielsen M, Buus S, and Nene V
- Subjects
- Amino Acid Sequence, Animals, Cattle, Enzyme-Linked Immunosorbent Assay veterinary, Histocompatibility Antigens, Molecular Sequence Data, Sequence Alignment veterinary, Algorithms, Epitopes, T-Lymphocyte immunology, Major Histocompatibility Complex, T-Lymphocytes, Cytotoxic immunology, Theileria parva immunology, beta 2-Microglobulin immunology
- Abstract
Peptide-major histocompatibility complex (p-MHC) class I tetramer complexes have facilitated the early detection and functional characterisation of epitope specific CD8+ cytotoxic T lymphocytes (CTL). Here, we report on the generation of seven recombinant bovine leukocyte antigens (BoLA) and recombinant bovine β2-microglobulin from which p-MHC class I tetramers can be derived in ~48 h. We validated a set of p-MHC class I tetramers against a panel of CTL lines specific to seven epitopes on five different antigens of Theileria parva, a protozoan pathogen causing the lethal bovine disease East Coast fever. One of the p-MHC class I tetramers was tested in ex vivo assays and we detected T. parva specific CTL in peripheral blood of cattle at day 15-17 post-immunization with a live parasite vaccine. The algorithm NetMHCpan predicted alternative epitope sequences for some of the T. parva CTL epitopes. Using an ELISA assay to measure peptide-BoLA monomer formation and p-MHC class I tetramers of new specificity, we demonstrate that a predicted alternative epitope Tp229-37 rather than the previously reported Tp227-37 epitope is the correct Tp2 epitope presented by BoLA-6*04101. We also verified the prediction by NetMHCpan that the Tp587-95 epitope reported as BoLA-T5 restricted can also be presented by BoLA-1*02301, a molecule similar in sequence to BoLA-T5. In addition, Tp587-95 specific bovine CTL were simultaneously stained by Tp5-BoLA-1*02301 and Tp5-BoLA-T5 tetramers suggesting that one T cell receptor can bind to two different BoLA MHC class I molecules presenting the Tp587-95 epitope and that these BoLA molecules fall into a single functional supertype.
- Published
- 2014
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23. Evaluation of the recognition of Theileria parva vaccine candidate antigens by cytotoxic T lymphocytes from Zebu cattle.
- Author
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Akoolo L, Pellé R, Saya R, Awino E, Nyanjui J, Taracha EL, Kanyari P, Mwangi DM, and Graham SP
- Subjects
- Animals, Antigens, Protozoan immunology, Enzyme-Linked Immunosorbent Assay veterinary, Immunization methods, Interferon-gamma blood, Male, Peptide Library, Protozoan Vaccines therapeutic use, Theileriasis parasitology, Theileriasis prevention & control, Vaccines, Subunit immunology, Vaccines, Subunit therapeutic use, Cattle immunology, Immunization veterinary, Protozoan Vaccines immunology, T-Lymphocytes, Cytotoxic immunology, Theileria parva immunology, Theileriasis immunology
- Abstract
East Coast fever (ECF) is a highly fatal lymphoproliferative disease of cattle caused by Theileria parva, a tick-borne intracellular apicomplexan parasite. Parasite antigens that are targets of protective cytotoxic T lymphocyte (CTL) responses are required to formulate a sub-unit vaccine against ECF. A number of CTL target antigens have recently been identified and initial evaluation has shown their vaccine potential. This study aimed to evaluate whether these antigens were recognised by CTL obtained from six genetically diverse Zebu cattle immunized with a cocktail of T. parva stocks. T. parva Muguga specific polyclonal CD8(+) CTL lines were generated and confirmed to specifically lyse autologous infected cells. CTL recognition of autologous skin fibroblasts (iSF) transduced with recombinant modified vaccinia virus Ankara strain (MVA) expressing previously identified T. parva Muguga vaccine candidate antigens was evaluated using an IFN-gamma ELISpot assay. CTL lines from one of the four calves, BY120, responded specifically to cells infected with MVA expressing the antigen Tp2 and synthetic peptides were employed to map a new CTL epitope on this antigen. Immunoscreening of the T. parva genome with these CTL lines should identify novel antigens that will constitute valuable additions to the vaccine candidates currently being evaluated.
- Published
- 2008
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24. Immunostimulatory CpG oligodeoxynucleotides enhance the induction of bovine CD4+ cytotoxic T-lymphocyte responses against the polymorphic immunodominant molecule of the protozoan parasite Theileria parva.
- Author
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Graham SP, Saya R, Awino E, Ngugi D, Nyanjui JK, Hecker R, Taracha EL, and Nene V
- Subjects
- Adjuvants, Immunologic pharmacology, Amino Acid Sequence, Animals, Antibodies, Protozoan blood, Antigens, Protozoan genetics, Antigens, Protozoan pharmacology, CD4-Positive T-Lymphocytes drug effects, Cattle, Enzyme-Linked Immunosorbent Assay veterinary, Flow Cytometry veterinary, Immunization veterinary, Interferon-gamma immunology, Lymphocyte Activation, Male, Molecular Sequence Data, Protozoan Proteins genetics, Protozoan Proteins pharmacology, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins immunology, Recombinant Fusion Proteins pharmacology, T-Lymphocytes, Cytotoxic drug effects, T-Lymphocytes, Cytotoxic immunology, Antigens, Protozoan immunology, CD4-Positive T-Lymphocytes immunology, Oligodeoxyribonucleotides pharmacology, Protozoan Proteins immunology, Theileria parva immunology, Theileriasis immunology
- Abstract
Enhancement of the induction of cytotoxic T-cell responses by immunostimulatory CpG oligodeoxynucleotides has been described in humans and mouse models. The present study attempted to address whether CpG has a similar effect in cattle. Immunisation of cattle with a recombinant form of the polymorphic immunodominant molecule from Theileria parva emulsified with immunostimulatory CpG oligodeoxynucleotides in adjuvant had no effect on the induction of antibody responses including the isotype profile, but significantly enhanced the induction of cytolytic responses that were mediated by CD4+CD3+ T cells utilizing the perforin-granzyme pathway.
- Published
- 2007
- Full Text
- View/download PDF
25. Trypanosoma congolense infection of trypanotolerant N'Dama (Bos taurus) cattle is associated with decreased secretion of nitric oxide by interferon-gamma-activated monocytes and increased transcription of interleukin-10.
- Author
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Taylor K, Mertens B, Lutje V, and Saya R
- Subjects
- Animals, Base Sequence, Cattle, Cattle Diseases genetics, Cattle Diseases physiopathology, DNA Primers genetics, In Vitro Techniques, Interferon-gamma genetics, Interferon-gamma pharmacology, Interleukin-10 genetics, Interleukin-10 pharmacology, Lipopolysaccharides pharmacology, Monocytes physiology, Parasitemia immunology, Parasitemia physiopathology, Parasitemia veterinary, RNA, Messenger genetics, RNA, Messenger metabolism, Recombinant Proteins, Species Specificity, Transcription, Genetic, Trypanosomiasis, African immunology, Trypanosomiasis, African physiopathology, Tumor Necrosis Factor-alpha biosynthesis, Tumor Necrosis Factor-alpha genetics, Cattle Diseases immunology, Monocytes immunology, Nitric Oxide biosynthesis, Trypanosoma congolense, Trypanosomiasis, African veterinary
- Abstract
The mechanisms whereby trypanotolerant N'Dama cattle control infection with Trypanosoma congolense are unknown. Previous studies have suggested that the monocytes of N'Dama cattle are more highly activated during infection than those of trypanosusceptible Boran cattle. However, we have recently reported that the monocytes of Boran cattle have a reduced capacity to secrete nitric oxide during trypanosome infection. We therefore evaluated the production of nitric oxide by monocytes of trypanotolerant N'Dama cattle infected with T. congolense in response to interferon-gamma, bacterial lipopolysaccharide or trypanosome antigens. Interferon-gamma-induced nitric oxide production was decreased between days 25 and 76 of infection, while lipopolysaccharide-induced secretion of nitric oxide was increased at days 13 and again at day 76 post-infection. Trypanosome antigens did not elicit nitric oxide production. Analysis of interleukin-10 mRNA transcription in peripheral blood leucocytes revealed an increase at time points that coincided with decreased interferon-gamma-induced nitric oxide synthesis. In contrast, interferon-gamma mRNA expression was not changed during infection while tumour necrosis factor-alpha was slightly reduced at day 32 post-infection. Recombinant interleukin-10 suppressed interferon-gamma-induced nitric oxide and tumour necrosis factor-alpha secretion, but not lipopolysaccharide-induced nitric oxide secretion in cultures of peripheral blood mononuclear cells and monocytes of uninfected cattle. These results suggest that the nitric oxide response of monocytes to IFN-gamma but not lipopolysaccharide, is suppressed during infection. The kinetics of the upregulation of interleukin-10 and its biological activity indicate a possible association with the depression of nitric oxide production and control of tumour necrosis factor-alpha.
- Published
- 1998
- Full Text
- View/download PDF
26. Detection and neutralization of bovine tumor necrosis factor by a monoclonal antibody.
- Author
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Sileghem M, Saya R, Ellis JA, Flynn JN, Peel JE, and Williams DJ
- Subjects
- Animals, Antibody Specificity, Binding, Competitive, Cattle, Cell Line, Cytotoxicity Tests, Immunologic, Mice, Neutralization Tests, Radioimmunoassay, Tumor Necrosis Factor-alpha analysis, Antibodies, Monoclonal, Tumor Necrosis Factor-alpha immunology
- Abstract
Monoclonal antibodies (MAbs) have been produced which are specific for bovine tumor necrosis factor (TNF). MAb BC9 detects bovine TNF in a radioimmunoassay with a detection limit of 24 pg/ml. BC9 also neutralizes the in vitro biological function of bovine recombinant TNF. The activity of 250 ng TNF/ml was entirely neutralized by 1% ascitic fluid. When ascites was added at a saturating concentration (10% ascitic fluid), up to 25 micrograms TNF per ml was neutralized. The neutralizing effect of BC9 was seen in cytotoxic assays using L929 cells and WEHI 164 clone 13 cells. The cytotoxic activity of supernatants from in vitro activated bovine monocytes was entirely blocked by BC9.
- Published
- 1992
- Full Text
- View/download PDF
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