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The taxonomic position of Halymenia floridana is a long-standing issue that needed to be assessed using DNA sequences of material from the type locality (Florida, USA). Here, we examined the vegetative and reproductive morpho-anatomy, and rbcL sequence data of topotypes and additional specimens from Brazil. Our results resolved the topotypes of 'H. floridana' within the genus Cryptonemia, in a clade harboring two closely related sister species, C. bermudensis and C. lacunicola. The rbcL haplotype of 'H. floridana' from Florida was also identical to previously and newly sequenced specimens from Brazil. Therefore, the new combination Cryptonemia floridana comb. nov. is herein established. Cryptonemia floridana exhibits entire to lobed foliose blades up to 12 cm high, a short basal midrib, medulla with conspicuous stellate ganglia and mostly periclinal filaments. The auxiliary cell is the first or the second cell of a third-order ampullar filament, and secondary connecting filaments are rare and cut off from the fusion cell. Our study is the first to provide the pre- and postfertilization stages in a Cryptonemia species, with generic status confirmed by DNA sequences. Numerous tropical Cryptonemia species await molecular confirmation and assessment of reproductive structures towards a better circumscription of the genus and its species diversity. [ABSTRACT FROM AUTHOR]

Caulerpa J.V. Lamouroux is a genus of green macroalgae belonging to the family Caulerpaceae in the order Bryopsidales. The genus comprises 104 currently accepted species, of which 51 have been recorded from Pacific Islands. Among these islands, French Polynesia is found in the middle of the South Pacific Ocean and includes five archipelagos (i.e., the Austral, Gambier, Marquesas, Society, and Tuamotu Islands) where seaweed inventories have reported a total of 16 Caulerpa species so far based on morphology. Here, based on a sampling covering the five archipelagos of French Polynesia, we attempt to (i) verify the taxonomy of Caulerpa species present in these regions based on phylogeny, (ii) describe in more detail the specific diversity between the five archipelagos, and (iii) provide a morphological identification tool for these species. We successfully obtained 134 new tufA sequences for phylogenetic analyses, which corresponded to 13 species. We propose to resurrect C. pickeringii Harvey & Bailey for representatives of C. webbiana var. pickeringii and classify it in the Caulerpa subgenus Araucarioideae. We also transfer C. seuratii to C. pickeringii based on genetic results. A new morphological identification key is provided as well as an updated distribution of Caulerpa species across French Polynesia. [ABSTRACT FROM AUTHOR]

Elasmobranchs are threatened and eDNA metabarcoding is a powerful tool that can help efforts to better understand and conserve them. Nevertheless, the inter‐calibration between optimal methodological practices and its implementation in resource‐limited situations is still an issue. Based on promising results from recent studies, the authors applied a cost‐effective protocol with parameters that could be easily replicated by any conservationist. Nonetheless, the results with fewer elasmobranchs detected than expected reveal that endorsed primers and sampling strategies still require further optimization, especially for applications in resource‐limited conservation programmes. [ABSTRACT FROM AUTHOR]

Abstract Background The Hawaiian red algal flora is diverse, isolated, and well studied from a morphological and anatomical perspective, making it an excellent candidate for assessment using a combination of traditional taxonomic and molecular approaches. Acquiring and making these biodiversity data freely available in a timely manner ensures that other researchers can incorporate these baseline findings into phylogeographic studies of Hawaiian red algae or red algae found in other locations. Results A total of 1,946 accessions are represented in the collections from 305 different geographical locations in the Hawaiian archipelago. These accessions represent 24 orders, 49 families, 152 genera and 252 species/subspecific taxa of red algae. One order of red algae (the Rhodachlyales) was recognized in Hawaii for the first time and 196 new island distributional records were determined from the survey collections. One family and four genera are reported for the first time from Hawaii, and multiple species descriptions are in progress for newly discovered taxa. A total of 2,418 sequences were generated for Hawaiian red algae in the course of this study - 915 for the nuclear LSU marker, 864 for the plastidial UPA marker, and 639 for the mitochondrial COI marker. These baseline molecular data are presented as neighbor-joining trees to illustrate degrees of divergence within and among taxa. The LSU marker was typically most conserved, followed by UPA and COI. Phylogenetic analysis of a set of concatenated LSU, UPA and COI sequences recovered a tree that broadly resembled the current understanding of florideophyte red algal relationships, but bootstrap support was largely absent above the ordinal level. Phylogeographic trends are reported here for some common taxa within the Hawaiian Islands and include examples of those with, as well as without, intraspecific variation. Conclusions The UPA and COI markers were determined to be the most useful of the three and are recommended for inclusion in future algal biodiversity surveys. Molecular data for the survey provide the most extensive assessment of Hawaiian red algal diversity and, in combination with the morphological/anatomical and distributional data collected as part of the project, provide a solid baseline data set for future studies of the flora. The data are freely available via the Hawaiian Algal Database (HADB), which was designed and constructed to accommodate the results of the project. We present the first DNA sequence reference collection for a tropical Pacific seaweed flora, whose value extends beyond Hawaii since many Hawaiian taxa are shared with other tropical areas.

Abstract Background Organization and presentation of biodiversity data is greatly facilitated by databases that are specially designed to allow easy data entry and organized data display. Such databases also have the capacity to serve as Laboratory Information Management Systems (LIMS). The Hawaiian Algal Database was designed to showcase specimens collected from the Hawaiian Archipelago, enabling users around the world to compare their specimens with our photographs and DNA sequence data, and to provide lab personnel with an organizational tool for storing various biodiversity data types. Description We describe the Hawaiian Algal Database, a comprehensive and searchable database containing photographs and micrographs, geo-referenced collecting information, taxonomic checklists and standardized DNA sequence data. All data for individual samples are linked through unique accession numbers. Users can search online for sample information by accession number, numerous levels of taxonomy, or collection site. At the present time the database contains data representing over 2,000 samples of marine, freshwater and terrestrial algae from the Hawaiian Archipelago. These samples are primarily red algae, although other taxa are being added. Conclusion The Hawaiian Algal Database is a digital repository for Hawaiian algal samples and acts as a LIMS for the laboratory. Users can make use of the online search tool to view and download specimen photographs and micrographs, DNA sequences and relevant habitat data, including georeferenced collecting locations. It is publicly available at http://algae.manoa.hawaii.edu.

Routine DNA barcoding with the chloroplast gene tufA identified novel records of an unknown and denuded (i.e. lacking branchlets) Caulerpa species previously reported from the Florida Middle Grounds. tufA barcoding not only confirmed the matching molecular identity of this taxon with several newly collected denuded specimens from shallow habitats of the Yucatán shelf, but also with a set of plumose specimens previously collected from mesophotic depths of the West Florida shelf and recorded as Caulerpa sertularioides. Sequencing of two additional, faster-evolving DNA markers, i.e. nuclear ITS and the newly tested chloroplast-encoded rpoA, each confirmed conspecificity of the above morphotypes and the molecular separation of the new taxon from C. sertularioides and filiform species found in the region, namely C. cupressoides f. denudata and C. fastigiata. In light of our sequencing results and review of the early taxonomic history of filiform Caulerpa, we propose the description of Caulerpa wysorii sp. nov. for this new species that exhibits two distinct morphotypes in currently available collections, i.e. filiform or plumose assimilators. We also subsume C. tongaensis within the broadly distributed C. fastigiata, whose lectotype is also designated herein. In addition to Caulerpa wysorii sp. nov., we discovered yet another unknown denuded species from the Campeche Banks represented by a single specimen thus far. [ABSTRACT FROM AUTHOR]

Udotea geppiorum is reported to form meadows in deep-water, soft sediment habitats in the Main Hawaiian Islands. The identification of the species, initially published as U. argentea in the archipelago, is revised and confirmed based on morphological assessment and comparative DNA sequencing with western Pacific specimens. Udotea geppiorum is fully corticated and newly shown to display discrete concentric segments arranged in a 'tongue and groove' manner, which are connected by medullary siphons running along the entire segment interface. Udotea geppiorum is phylogenetically nested among a cluster of Udotea spp. recently circumscribed within Udotea sensu stricto. This cluster of species is separate from the remainder of the family Udoteaceae, which includes several genera and Udotea spp. sensu lato that lack or exhibit incomplete cortication. Based on field observations conducted in O'ahu and Maui, U. geppiorum can be found from 20 m to > 90 m depth with a peak in abundance at mesophotic depths of 60–85 m, where it forms extensive meadows that support associated diversity. [ABSTRACT FROM AUTHOR]

The gelatinous, calciferous red alga Renouxia antillana was described in 1995 based on material from Guadeloupe, French West Indies, and accommodated in a new family and order (Rhodogorgonaceae, Rhodogorgonales) along with the genus Rhodogorgon from Belize and Caribbean Panama. For more than 20 years, Renouxia has remained monotypic, with rare reports in the Caribbean and the Indo-Pacific (from Réunion Island to French Polynesia). DNA-based analyses of recently collected Renouxia specimens from Egypt showed that they are not conspecific with the Caribbean R. antillana and are described as R. marerubra sp. nov. Uncorrected p-distances between the Red Sea specimens and the generitype were 8.0% for COI, 6.5-7.3% for rbcL and 3.1% for UPA. Morphological and anatomical features are also presented for the newly described species and compared to its congener, with the first documented report of monoecism in the Rhodogorgonales. Besides the new record of Renouxia from the Red Sea, the geographic distribution of the genus is here extended with additional records from Sri Lanka, Indonesia, as well as the islands of Guam and Kosrae in the Western Pacific. The UPA phylogeny suggests that these new distribution records may also represent undescribed species, with representatives in two distinct genetic groups. [ABSTRACT FROM AUTHOR]

Background A second species in the siphonous green algal genus Avrainvillea was recently discovered off the island of O'ahu in the Main Hawaiian Islands. Specimens were collected from Honolulu Harbor, including its entrance channel, and near Ke'ehi Harbor. These locations are both in Mālama Bay on O'ahu's south shore in or adjacent to urbanized estuaries, respectively. In situ observations, morphological and molecular assessments were conducted to examine the alga's habit and distribution, as well as to assess its putative species identification. New information The alga occurred in sand as single individuals or in clusters of several individuals at both sites, and near or within seagrass beds (Halophila decipiens) and algal meadows composed of the green alga Halimeda kanaloana and an unidentified Udotea species at the Ke'ehi Harbor site. All analyses supported both populations as representative of the same taxa, reported until further investigation in the broad Pacific as Avrainvillea cf. erecta based on morphological and molecular analyses. This record of a second Avrainvillea species in Hawai'i is of particular concern considering that an alga recognized as A. amadelpha, first observed in 1981 from two locales on O'ahu's south shore, has become invasive in Hawai'i's intertidal to mesophotic environments. [ABSTRACT FROM AUTHOR]