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Physiological experiments in Heterosigma akashiwo provide metabolic insights to the future of algal blooms under warming and acidifying ocean conditions.

The Korea Strait (KS) is a crucial marine passage for transporting heat, salt, and materials from the South Sea to the East Sea. The Tsushima Warm Water (TWW) and Korea Strait Bottom Cold Water (KSBCW) are major water masses that flow across the strait, but their effects on prokaryotic communities have been unclear. We used high-throughput sequencing to study the impact of TWW and KSBCW on prokaryotic composition and metabolic changes in the upper (0–50m; UL), middle (50–75m; ML), and bottom (75–150m; BL) layers during the fall of 2018 and 2019. The results showed that the UL had a freshwater influence from Changjiang Diluted Water in 2019, altering prokaryotic compositions and metabolic potentials. The KSBCW in the BL transported new bacterial communities with unique metabolic characteristics. Key genes involved in carbon metabolism had water mass impacts, preferring lower saline and temperature environments, and carbon fixation potential shifted from phototrophs in 2018 to chemotrophs in 2019. Temperature changes induced acclimation processes producing heat- and cold-shock genes/proteins. Our findings indicate that the freshwater influence and KSBCW modified the prokaryotic composition and metabolic function differentially. These results are important in understanding the relationship between water masses and ongoing environmental changes in this understudied region.

Nitrous oxide (N2O) is an important greenhouse gas emitted in significant volumes by the Pacific Ocean. However, the relationship between N2O dynamics and environmental drivers in the subtropical western North Pacific Ocean (STWNPO) remains poorly understood. We investigated the distribution of N2O and its production as well as the related mechanisms at the surface (0–200 m), intermediate (200–1500 m), and deep (1500–5774 m) layers of the STWNPO, which were divided according to the distribution of water masses. We applied the transit time distribution (TTD) method to determine the ventilation times, and to estimate the N2O equilibrium concentration of water parcels last in contact with the atmosphere prior to being ventilated. In the surface layer, biologically derived N2O (ΔN2O) was positively correlated with the apparent oxygen utilization (AOU) (R2 = 0.48), suggesting that surface N2O may be produced by nitrification. In the intermediate layer, ΔN2O was positively correlated with AOU and NO3− (R2 = 0.92 and R2 = 0.91, respectively) and negatively correlated with nitrogen sinks (N*) (R2 = 0.60). Hence, the highest ΔN2O value in the oxygen minimum layer suggested N2O production through nitrification and potential denitrification (up to 51% and 25% of measured N2O, respectively). In contrast, the deep layer exhibited a positive correlation between ΔN2O and AOU (R2 = 0.92), suggesting that the N2O accumulation in this layer may be caused by nitrification. Our results demonstrate that the STWNPO serves as an apparent source of atmospheric N2O (mean air−sea flux 2.0 ± 0.3 μmol m-2 d-1), and that nitrification and potential denitrification may be the primary mechanisms of N2O production in the STWNPO. We predict that ongoing ocean warming, deoxygenation, acidification, and anthropogenic nitrogen deposition in the STWNPO may elevate N2O emissions in the future. Therefore, the results obtained here are important for elucidating the relationships between N2O dynamics and environmental changes in the STWNPO and the global ocean.

Although environmental drivers are known to shape the abundance and distribution of bacterial communities in the East Sea, the effects of physical processes have not been directly studied. Here, we aimed to examine the influences of water mass mixing (summer) and eddy circulation (winter) on the surface bacterial communities of the Ulleung Basin (UB), East Sea, based on the metagenomic approach. Overall, 490,087 operational taxonomic units (OTUs) were identified from five stations, and prokaryotic abundance was dominant at all stations in both seasons. Among the prokaryotes, most OTUs were affiliated with Proteobacteria, Cyanobacteria, Flavobacteria, and Actinobacteria during summer and winter. Bacterial communities were found to differ with water masses (Changjiang, Tsushima, and North Korea surface water) and eddy circulation, and were strongly correlated with environmental variables, suggesting specific bacterial community responses with specific seasonal physicochemical parameters. Our investigation indicates that together with distance and environment, advection shapes the UB bacterial community composition, helping us better understand the physical cues related to biological composition in the East Sea. However, further studies are needed to ascertain the role of microbial functional genes along with the advection of oceanographic processes in the East Sea to better understand the regional biogeochemical processes.

To examine the spatial pattern and controlling factors of the primary productivity (PP) of phytoplankton in the eastern Indian Ocean (EIO), deck-incubation carbon fixation (a 14C tracer technique) and the related hydrographic properties were measured at 15 locations during the pre-summer monsoon season (February–April 2017). There are knowledge gaps in the field observations of PP in the EIO. The estimated daily carbon production rates integrated over the photic zone ranged from 113 to 817 mgC m–2 d–1, with a mean of 522 mgC m–2 d–1. The mixed-layer integrated primary production (MLD-PP) ranged from 29.0 to 303.7 mgC m–2 d–1 (mean: 177.2 mgC m–2 d–1). The contribution of MLD-PP to the photic zone-integrated PP (PZI-PP) varied between 19 and 51% (mean: 36%). Strong spatial variability in the carbon fixation rates was found in the study region. Specifically, the surface primary production rates were relatively higher in the Bay of Bengal domain affected by riverine flux and lower in the equatorial domain owing to the presence of intermonsoonal Wyrtki jets, which were characterized by a depression of thermocline and nitracline. The PZI-PP exhibited a linear (positive) relationship with nutrient values, but with no significance, indicating a partial control of macronutrients and a light limitation of carbon fixation. As evident from the vertical profiles, the primary production process mainly occurred above the nitracline depth and at high photosynthetic efficiency. Phytoplankton (>5 μm), including dinoflagellates, Trichodesmium, coccolithophores, and dissolved nutrients, are thought to have been correlated with primary production during the study period. The measured on-deck biological data of our study allow for a general understanding of the trends in PP in the survey area of the EIO and can be incorporated into global primary production models.

Global warming is expected to reduce the nutrient concentration in the upper ocean and affect the physiology of marine diatoms, but the underlying molecular mechanisms controlling these physiological changes are currently unknown. To understand these mechanisms, here we investigated iTRAQ based proteomic profiling of diatom Skeletonema dohrnii in a multifactorial experimental with a combining change of temperature and silicate concentrations. In total, 3369 differently abundant proteins were detected in four different environmental conditions, and the function of all proteins was identified using Gene Ontology and KEGG pathway analysis. For discriminating the proteome variation among samples, multivariate statistical analysis (PCA, PLS-DA) was performed by comparing the protein ratio differences. Further, performing pathway analysis on diatom proteomes, we here demonstrated downregulation of photosynthesis, carbon metabolism, and ribosome biogenesis in the cellular process that leads to decrease the oxidoreductase activity and affects the cell cycle of the diatom. Using PLS-DA VIP score plot analysis, we identified 15 protein biomarkers for discriminating studied samples. Of these, five proteins or gene (rbcL, PRK, atpB, DNA-binding, and signal transduction) identified as key biomarkers, induced by temperature and silicate stress in diatom metabolism. Our results show that proteomic finger-printing of S. dohrnii with different environmental conditions adds biological information that strengthens marine phytoplankton proteome analysis.

Silicate (Si) and temperature are essential drivers for diatom growth and development in the ocean. Response of diatoms to these particular stress has been investigated; however, their common and specific responses to regulate intracellular development and growth are not known. Here, we investigated the combination of physiological characteristics and comparative proteomics of the diatom Skeletonema dohrnii grown in silicate- and temperature-limited conditions. Results show that cell carbon and lipid quotas were higher at lower-temperature cells, whereas cellular phosphate was higher in cells grown with lower Si. In silicate-limited cells, nitrate transporters were downregulated and resulted in lower nitrate assimilation, whereas the phosphate transporters and its assimilation were reduced in lower-temperature conditions. In photosynthesis, lower silicate caused impact in the linear electron flow and NADPH production, whereas cycling electron transport and ATP production were affected by the lower temperature. Concerning cell cycle, imbalances in the translation process were observed in lower-silicate cells, whereas impact in the transcription mechanism was observed in lower-temperature cells. However, proteins associated with carbon fixation and photorespiration were downregulated in both stress conditions, while the carbohydrate and lipid synthesis proteins were upregulated. Our results showed new insights into the common and specific responses on the proteome and physiology of S. dohrnii to silicate and temperature limitation, providing particular nutrient (Si)- and temperature-dependent mechanisms in diatoms.

Shifts in phytoplankton phenology were observed in the Strait of Malacca (SM) and Sunda Shelf (SS), which were speculated to be potentially related to global warming and climate anomaly events. Such interactions between phytoplankton structure and physico-chemical factors were less known in narrow straits. Therefore, the spatial distribution pattern and diversity of surface phytoplankton assemblage, local hydrology, and nutrient regimes were investigated over the SM and SS (South China Sea, SCS) during 2017 and 2018 pre-monsoon season (spring). Diatoms, dinoflagellates, and cyanobacteria were representatives of microphytoplankton in the survey area. Total phytoplankton abundance peaked near Singapore Strait (SGS) and diminished toward SS. From the lower ratio of diatoms to dinoflagellates (

Abstract Distribution of diazotrophs and their nitrogen fixation activity were investigated in the northern South China Sea (nSCS) and the Kuroshio from July 16th to September 1st, 2009. N2 fixation activities in whole seawater and

Marine diatoms are promising candidates for biotechnological applications, since they contain high-value compounds, naturally. To facilitate the production of these compounds, stress conditions are often preferable; however, challenges remain with respect to maximizing a metabolic potential for the large-scale cultivation. Here, we sequenced the transcriptome of diatom Skeletonema dohrnii under the actual (21 °C, 400 ppm) and elevated (25 °C, 1000 ppm) temperature and pCO2 condition. Results indicated that cells grown at higher temperature and pCO2 showed increasing growth rate, pigment composition, and biochemical productivity as did the expression of chlorophyll, carotenoid and bioactive compound related genes or transcripts. Furthermore, performing de novo transcriptome, we identified 32,884 transcript clusters and found 10,974 of them were differentially expressed between these two conditions. Analyzing the functions of differentially expressed transcripts, we found many of them involved in core metabolic and biosynthesis pathways, including chlorophyll metabolism, carotenoid, phenylpropanoid, phenylalanine and tyrosine, and flavonoid biosynthesis was upregulated. Moreover, we here demonstrated that utilizing a unique bio-fixation ability, S. dohrnii is capable of suppressing central carbon metabolism to promote lipid productivity, fatty acid contents and other bioactive compounds under high temperature and pCO2 treatment. Our study suggests that this S. dohrnii species could be a potential candidate for wide-scale biotechnological applications under elevated temperature and CO2 conditions.