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During our studies on the genus Lepiota in Pakistan, we collected two putatively new species from Punjab Province, with distinct morphology, ITS, and 28S of nrDNA profile. L. aurantiopilea is featured by orange to yellow-orange pileus with a reddish-brown umbo, tiny granules on the surface that are concolorous to pileus, absence of annulus, subglobose to oblong, ellipsoid or spurred basidiospores, clavate fusoid-ventricose, utriform cheilocystidia and hymeniderm made up clavate to subfusiform elements. Another new species, L. bahawalnagarensis has a light grayish-brown pileus with dark grayish-brown reddish-brown umbo, grayish-yellow brown zonation on the surface, pale yellow stipe, single-edged annulus, ellipsoid basidiospores, versiform cheilocystidia, hymeniderm pileipellis, and clavate to utriform caulocystidia. Photographs of fresh basidiomata, descriptions, and line drawings of key microscopic features are provided. Morphological characters and phylogenetic trees inferred from nrITS and 28S of nrDNA sequences show that both of our new species clustered within section Liliaceae. [ABSTRACT FROM AUTHOR]

Fungal traits can provide a mechanistic understanding of how wood‐inhabiting fungi interact with their environment and how that influences community assembly in deadwood. However, fungal trait exploration is relatively new and almost no studies measure fungal traits in their environment.In this study we tested species‐ and trait‐environment relationships in reproducing fungal communities inhabiting 571 Norway spruce (Picea abies) logs in 55 isolated forest patches (0.1–9.9 ha) of different naturalness types, located in Northern boreal Sweden. The studied patches were (1) semi‐natural set‐aside patches within highly managed landscapes, or (2) old‐growth natural patches located in an unmanaged landscape. We tested species and trait relationships to deadwood substrate and forest patch variables. We measured mean fruit body size and density for each of the 19 species within communities.Traits assembled in relation to log decay stage and forest patch naturalness, illustrating the important role of deterministic environmental filtering in shaping reproducing wood‐inhabiting fungal communities. Early decay stage communities had larger, less dense, annual fruiting bodies of half‐resupinate type and were more often white‐rot fungi. Species rich mid‐decay stage communities had mixed trait assemblages with more long lived perennial fruit bodies of intermediate size, and both brown‐ and white‐rot fungi equally represented. Finally, late decay stage communities had smaller, denser and perennial fruit bodies, more often of the brown‐rot type.The relationships between the studied traits and decay stages were similar in both set‐aside and natural patches. However, set‐aside semi‐natural patches in highly managed landscapes more frequently supported species with smaller, perennial and resupinate fruit bodies compared to natural patches in an unmanaged landscape.Synthesis. We found that log decay stage was the primary driver of fungal community assembly of species and traits in isolated forest patches. Our results suggest that decay stage filters four reproduction traits (fruit body density, size, lifespan and type) and one resource‐use trait (white or brown rot). Our results highlights, for the first time, that communities with diverse fungal reproductive traits are maintained foremost across all deadwood decay stages under different forest naturalness conditions. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

Pezizales are a diverse and economically important order of fungi. They are common in the environment, having epigeous form, such as morels and hypogeous, forms called truffles. The mature ascospores of most epigeous Pezizales are forcibly discharged through an opening at the ascus apex created with the lifting of the operculum, a lid-like structure specific to Pezizales. The axenic cultures of Pezizales fungi isolated from single ascospores are important for understanding the life cycle, development, ecology, and evolution of these fungi. However, obtaining single-spore isolates can be challenging, particularly for collections obtained in locations where sterile work environments are not available. In this paper, we introduce an accessible method for harvesting ascospores from fresh ascomata in the field and laboratory for obtaining single-spore isolates. Ascospores are harvested on the inside cover of Petri plate lids in the field, air dried, and stored. At a later date, single-spore isolates are axenically cultured through serial dilution and plating on antibiotic media. With this approach, we were able to harvest ascospores and obtain single-spore isolates from 12 saprotrophic and 2 ectomycorrhizal species belonging to six Pezizales families: Discinaceae, Morchellaceae, Pezizaceae, Pyronemataceae, Sarcosomataceae, and Sarcoscyphaceae. This method worked well for saprotrophic taxa (12 out of 19 species, 63%) and was even effective for a few ectomycorrhizal taxa (2 out of 13 species, 15%). This process was used to study the initial stages of spore germination and colony development in species across several Pezizales families. We found germination often commenced with the swelling of the spore, followed by the emergence of 1–8 germ tubes. This method is sufficiently straightforward that, provided with sterile Petri dishes, citizen scientists from distant locations could use this approach to capture spores and subsequently mail them with voucher specimens to a research laboratory for further study. The generated single-spore Pezizales isolates obtained through this method were used to generate high-quality genomic data. Isolates generated in this fashion can be used in manipulative experiments to better understand the biology, evolution, and ecogenomics of Pezizales. [ABSTRACT FROM AUTHOR]

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Aim: Efforts to predict the responses of soil fungal communities to climate change are hindered by limited information on how fungal niches are distributed across environmental hyperspace. We predict the climate sensitivity of North American soil fungal assemblage composition by modelling the ecological niches of several thousand fungal species. Location: One hundred and thirteen sites in the United States and Canada spanning all biomes except tropical rain forest. Major Taxa Studied: Fungi. Time Period: 2011–2018. Methods: We combine internal transcribed spacer (ITS) sequences from two continental‐scale sampling networks in North America and cluster them into operational taxonomic units (OTUs) at 97% similarity. Using climate and soil data, we fit ecological niche models (ENMs) based on logistic ridge regression for all OTUs present in at least 10 sites (n = 8597). To describe the compositional turnover of soil fungal assemblages over climatic gradients, we introduce a novel niche‐based metric of climate sensitivity, the Sørensen climate sensitivity index. Finally, we map climate sensitivity across North America. Results: ENMs have a mean out‐of‐sample predictive accuracy of 73.8%, with temperature variables being strong predictors of fungal distributions. Soil fungal climate niches clump together across environmental space, which suggests common physiological limits and predicts abrupt changes in composition with respect to changes in climate. Soil fungi in North American climates are more likely to be limited by cold and dry conditions than by warm and wet conditions, and ectomycorrhizal fungi generally tolerate colder temperatures than saprotrophic fungi. Sørensen climate sensitivity exhibits a multimodal distribution across environmental space, with a peak in climates corresponding to boreal forests. Main Conclusions: The boreal forest occupies an especially precarious region of environmental space for the composition of soil fungal assemblages in North America, as even small degrees of warming could trigger large compositional changes characterized mainly by an influx of warm‐adapted species. [ABSTRACT FROM AUTHOR]

Specimens of Crinipellis and Marasmius (Marasmiaceae) collected from Beijing, North China, were studied by morphological and molecular methods. Phylogenetic analyses were performed separately for the two genera based on ITS sequence data. Two new species, C. deutziae and M. pinicola, were found, and C. rhizomaticola was reported from China for the first time. Crinipellis deutziae is characterized by small basidiocarps, large and variably shaped basidiospores measuring 8.8–11 × 7.5–9.5 µm, the presence of both cheilocystidia and pleurocystidia, and growing on Deutzia parviflora. Marasmius pinicola is characterized by small basidiocarps, cylindrical, reniform to phaseoliform basidiospores measuring 6–8 × 3.5–4.2 µm, often capitate cheilocystidia, and pleurocystidia, and growing on fallen leaves of Pinus tabuliformis. Descriptions and illustrations are provided for the three species. The results of this study contribute to the knowledge of the species diversity of macro-fungi in Beijing. [ABSTRACT FROM AUTHOR]

Panaeolus punjabensis M. Asif, Q. Firdous, A. Izhar, Niazi & Khalid sp. nov. was collected from three different localities (Bahawalnagar, Kasur, and Lahore) in Punjab, Pakistan. Morphological observations and phylogenetic analyses based on nuclear encoded internal transcribed spacers (ITS1-5.8S-ITS2 = ITS) and D1/D2 domain of large subunit (28S) rDNA confirmed the taxonomic distinctness of this species. The new species is potentially hallucinogenic and characterized by a parabolic pileus with a light brown center, broadly fusiform basidiospores, presence of cheilocystidia, pileocystidia, and caulocystidia, and absence of pleurocystidia and clamp connections. The DNA sequences of the species clustered together in a well-supported distinct clade. We present a detailed description, photographs, and line drawings, and elucidate and discuss the phylogenetic position of the new species. Morphological comparisons with phylogenetically and morphologically allied species are discussed.

Witches' broom disease of cacao is caused by the pathogenic fungus Moniliophthora perniciosa. By using tomato (Solanum lycopersicum) cultivar Micro-Tom (MT) as a model system, we investigated the physiological and metabolic consequences of M. perniciosa infection to determine whether symptoms result from sink establishment during infection. Infection of MT by M. perniciosa caused reductions in root biomass and fruit yield, a decrease in leaf gas exchange, and down-regulation of photosynthesis-related genes. The total leaf area and water potential decreased, while ABA levels, water conductance/conductivity, and ABA-related gene expression increased. Genes related to sugar metabolism and those involved in secondary cell wall deposition were up-regulated upon infection, and the concentrations of sugars, fumarate, and amino acids increased. 14C-glucose was mobilized towards infected MT stems, but not in inoculated stems of the MT line overexpressing CYTOKININ OXIDASE-2 (35S::AtCKX2), suggesting a role for cytokinin in establishing a sugar sink. The up-regulation of genes involved in cell wall deposition and phenylpropanoid metabolism in infected MT, but not in 35S::AtCKX2 plants, suggests establishment of a cytokinin-mediated sink that promotes tissue overgrowth with an increase in lignin. Possibly, M. perniciosa could benefit from the accumulation of secondary cell walls during its saprotrophic phase of infection. [ABSTRACT FROM AUTHOR]

The chlorophyllous, terrestrial orchid Cremastra appendiculata from East Asia is unique concerning its fungal mycorrhiza partners. The initially mycoheterotrophic protocorms exploit rather specialized non-rhizoctonia saprotrophic Psathyrellaceae. Adult individuals of this orchid species are either linked to Psathyrellaceae being partially mycoheterotrophic or form mycorrhiza with fungi of the ubiquitous saprotrophic rhizoctonia group. This study provides new insights on nutrition mode, subterranean morphology and fungal partners across different life stages of C. appendiculata. We compared different development stages of C. appendiculata to surrounding autotrophic reference plants based on multi-element natural abundance stable isotope analyses (δ13C, δ15N, δ2H, δ18O) and total N concentrations. Site- and sampling-time-independent enrichment factors of stable isotopes were used to reveal trophic strategies. We determined mycorrhizal fungi of C. appendiculata protocorm, seedling and adult samples using high-throughput DNA sequencing. We identified saprotrophic non-rhizoctonia Psathyrellaceae as dominant mycorrhizal fungi in protocorm and seedling rhizomes. In contrast, the roots of seedlings and mature C. appendiculata were mainly colonized with fungi belonging to the polyphyletic assembly of rhizoctonia (Ceratobasidium , Thanatephorus and Serendipitaceae). Mature C. appendiculata did not differ in isotopic signature from autotrophic reference plants suggesting a fully autotrophic nutrition mode. Characteristic of orchid specimens entirely relying on fungal nutrition, C. appendiculata protocorms were enriched in 15N, 13C and 2H compared to reference plants. Seedlings showed an intermediate isotopic signature, underpinning the differences in the fungal community depending on their subterranean morphology. In contrast to the suggestion that C. appendiculata is a partially mycoheterotrophic orchid species, we provide novel evidence that mature C. appendiculata with rhizoctonia mycobionts can be entirely autotrophic. Besides an environmentally driven variability among populations, we suggest high within-individual flexibility in nutrition and mycobionts of C. appendiculata , which is subject to the ontogenetic development stage. [ABSTRACT FROM AUTHOR]

During mycological surveys of different areas of Punjab, Pakistan, we collected a new species from the genus Candolleomyces. This is the first report of any species of this genus from Pakistan. Candolleomyces asiaticus M.Asif, A.Izhar, Niazi & Khalid sp. nov. is characterized by ellipsoid to oblong-ellipsoid (8.2 × 5 µm) basidiospores with indistinct germ pores, lageniform to utriform cheilocystidia without adhering deposits at the apices, absence of pleuro-, pileo- and caulocystidia, pileipellis with spherical, subglobose to columnar cells, and presence of clamp connections. The morpho-anatomical and molecular phylogenetic analysis of nrITS revealed its distinct phylogenetic position, further supporting the recognition of a new species.

Fungal communities are especially relevant in Mediterranean regions, a ‘hotspot’ of fungal diversity, and where the value of edible commercial sporocarps may be much higher than the income from timber products. Assessing the effects of forest management practices together with the modulating role of climate on sporocarp community composition and diversity is crucial for understanding their impacts on fungal-related ecosystem services. Yet, previous research on forest management impacts on aboveground fungal diversity and community composition is scant, sometimes contradictory and mainly focused on rather short-term impacts. We quantified the long-term response of the sporocarp community composition and diversity to different forest thinning intensities in Mediterranean Pinus pinaster forest stands, and the interactions with weather conditions in modulating the fungal response. We relied on 28 permanent plots representing a thinning intensity gradient, monitored for sporocarp diversity on a weekly basis during eleven consecutive years. Weather conditions of each plot were obtained through interpolation from different meteorological stations. Overall, the fungal sporocarp community composition showed short-term (

Aim: Knowledge concerning species distribution is important for biodiversity conservation and environmental management. Fungi form a large and diverse group of species and play a key role in nutrient cycling and carbon storage. However, our understanding of fungal diversity and distribution remains limited, particularly at large spatial scales. Here, we predicted the diversity and distribution of ectomycorrhizal and saprotrophic macrofungi at relatively fine spatial resolution at a continental scale and examined the importance of variables that affect the distribution of these two functional groups. Location: Europe. Time period: 1990–2018. Major taxa studied: Macrofungi. Methods: From observations of 1,845 macrofungal species, we predicted the diversity and distribution of two functional groups of macrofungi at a resolution of 5 km across eight European countries based on 25 environmental variables using the MaxEnt model. We determined the importance of variables that affect the distribution of these two functional groups of macrofungi using the built‐in jackknife test in the model. Results: Analysis of the modelling results showed that eastern Denmark and southern Sweden are biodiversity hotspots for both functional groups of macrofungal species. Tree species and human disturbance (i.e., the human footprint index) were found to be the two most important predictor variables explaining the distribution of ectomycorrhizal and saprotrophic macrofungi. Main conclusions: Overall, our study demonstrates that tree species and human disturbance have played a more important role than climatic factors in determining the diversity and distribution of macrofungi at the continental scale. Our study suggests that fungal diversity and distribution might change considerably if the strongest predictors (i.e., tree species) were to be affected by climate change and/or human activity. Changes in fungal diversity might, in turn, influence other processes, because fungi are important in driving ecosystem processes, such as nutrient and carbon cycling. [ABSTRACT FROM AUTHOR]

Prairies in the Pacific Northwest are dominated by perennial bunchgrasses. A Mycena in the citrinomarginata complex was observed to tightly co-occur with bunchgrasses at several prairie study sites. Mapping and spatial statistics showed that it was strongly and significantly associated with Festuca roemeri tussocks. We further found that this fungus is attached to F. roemeri roots (17/17 examined) and both specific primers and next-generation DNA sequencing established that the fungus is in the roots, suggesting that M. citrinomarginata may be endophytic or biotrophic in some contexts, and not simply saprotrophic. These results combined with a literature review indicate that Mycena species are often found as endophytes in grass roots. Given the importance of grasses and grasslands for humans, this ecological association deserves further study. [ABSTRACT FROM AUTHOR]

The small fruitbodies of Chlorosplenium are greenish yellow and mainly grow on woody substrates. The species diversity of the genus in China was investigated based on specimens formerly deposited in the Herbarium Mycologicum Academiae Sinicae as well as new collections gained in recent years. Our phylogenetic results revealed the species diversity of the genus is underestimated and the commonly known Chlorosplenium chlora is a species complex. Based on morphology studies and sequence analyses of three regions (ITS, LSU and RPB1), the Chinese collections represent two new species which are described and illustrated here as C. sinicum and C. sinochlora. Chlorosplenium fusisporum is quite possibly a species of the genus Chlorociboria, and C. hyperici-maculati should be excluded from the genus.

Highlights • In almost half of Siberian larch trees, decomposition started prior to death. • Those trees lost up to 29% of their wood mass before falling. • After tree death, the whole stem decomposition rate was 0.026 yr−1. • Trees affected by biotrophic fungi decomposed after death at a rate of 0.010 yr−1. Abstract Information on pathways and rates of decomposition of coarse woody debris (CWD) from one of the dominant boreal tree species – Siberian larch (Larix sibirica Ledeb.) – is scarce. We examined presence and distribution of internal decay in its living trees and decomposition rates in an 88-year chronosequence of logs in an old-growth mesic mixed European boreal forest. Fifty-two percent of the trees started decaying prior to death. Butt or stem rot was caused by white- and brown-rot biotrophic fungi in almost equal proportions. Those trees lost on average 29% of their initial wood mass. The mean decomposition rate of wood as related to initial conditions was 0.007 yr−1 for wood with initial biotrophic decay and 0.010 yr−1 for wood with saprotrophic decay. Bark lost its mass and volume faster – at a rate of 0.056 yr−1. The rate of carbon (C) loss for the whole stem was 0.024 yr−1 in wood affected by saprotrophic fungi and 0.007 yr−1 when the tree was affected by biotrophic fungi. When calculating C losses due to decomposition, separating bark and wood with different C concentrations and decomposition patterns as well as the rate of biotrophic and saprotrophic decay enables us to refine estimates of the role of Siberian larch CWD in C cycling. Further research is still needed to resolve uncertainties around the role of fungal communities and the origins and decomposition rates of butt rots and stem rots in living trees of Siberian larch, as well as the distribution patterns of these fungi and decomposition processes in individual trees and at the ecosystem level. [ABSTRACT FROM AUTHOR]

Abstract: Aim: Macroecological scales of species compositional trends are well documented for a variety of plant and animal groups, but remain sparse for fungi, despite their ecological importance in carbon and nutrient cycling. It is, thus, essential to understand the composition of fungal assemblages across broad geographical scales and the underlying drivers. Our overall aim was to describe these patterns for fungi across two nutritional modes (saprotrophic and ectomycorrhizal). Furthermore, we aimed to elucidate the temporal component of fruiting patterns and to relate these to soil carbon and nitrogen deposition. Location: Central and Northern Europe. Methods: A total of 4.9 million fungal fruit body observations throughout Europe, collected between 1970 and 2010, were analysed to determine the two main environmental and geographical gradients structuring fungal assemblages for two main nutritional modes, saprotrophic and ectomycorrhizal fungi. Results: Two main gradients explaining the geography of compositional patterns were identified, for each nutritional mode. Mean annual temperature (and related collinear, seasonal measures) correlated most strongly with the first gradient for both nutritional modes. Soil organic carbon was the highest correlate of the second compositional gradient for ectomycorrhizal fungi, suspected as an indicator of vegetation‐ and pH‐related covariates. In contrast, nitrogen deposition constituted a second gradient for saprotrophic fungi, likely a proxy for anthropogenic pollution. Compositional gradients and environmental conditions correlated similarly when the data were divided into two time intervals of 1970–1990 and 1991–2010. Evidence of compositional temporal change was highest with increasing elevation and latitude. Main conclusions: Fungal assemblage patterns demonstrate clear biogeographical patterns that relate the nutritional modes to their main environmental correlates of temperature, soil organic carbon and nitrogen deposition. With respect to global change impacts, the highest rates of compositional change by time suggest targeting higher latitudes and elevations for a better understanding of fungal dynamics. We, finally, suggest further examination of the ranges and dispersal abilities of fungi to better assess responses to global change. [ABSTRACT FROM AUTHOR]

Fungi are of pivotal importance for terrestrial ecosystems. They occur globally and show extremely high species diversities. In this review, we compiled information about the adaptability of pileate basidiomycetes by illustrating their habits in contrasting biomes, the arctic regions and tropical lowland rainforests. Mushrooms are faced with differing stress factors and levels in the two ecozones. They fight such challenges by using, by and large, similar physiological and morphological toolkits. They make them fit for extreme environmental conditions, by expressing traits according to biome characteristics. This way, fungal assemblages are formed and pheno- and genotypic plasticity is capitalised. Still, many questions remain open and need further clarification, such as trade-offs between thermal protection and predator defence, prevailing dispersal modes in the main ecozones, interactions with animals and the mechanisms that create genetic plasticity. [ABSTRACT FROM AUTHOR]

The aim of this study was to select species with higher potential to accumulate 137 Cs among the available mushroom species, by determining the activity concentrations of 137 Cs in mushrooms collected along north and north-western part of Croatia. A total of 55 samples of 14 different species were analyzed and the potential of mycorrhizal and saprotrophic species to accumulate 137 Cs was compared. A wide range of the dry weight activity concentrations of 137 Cs was detected, ranging from 0.95 to 1210 Bq/kg (154 Bq/kg mean value; 52.3 Bq/kg geometric mean) in mycorrhizal and 1.05–36.8 Bq/kg (8.90 Bq/kg mean value; 5.49 Bq/kg geometric mean) in saprotrophic species. Statistical analyses showed that mycorrhizal species accumulate significantly higher concentrations of 137 Cs and thus could perform better as long-term bioindicators of environmental pollution by radiocaesium then saprotrophic species. The comparison of Boletus sp. and Hydnum repandum (both mycorrhizal species commonly found in Croatia) showed, in general order of magnitude, higher accumulation in Hydnum repandum. Clearly, mushrooms, especially mycorrhizal species, can be used as significant indicators even decades after the occurrence of any serious 137 Cs contamination event. However, as a wide range of values indicates that various parameters may influence the total uptake of the 137 Cs into the mushroom fruit bodies, it is necessary to emphasize that 137 Cs activity detected in a single mushroom sample is very site-specific. [ABSTRACT FROM AUTHOR]

The nodule-forming actinobacterial genus Frankia can generally be divided into 4 taxonomic clusters, with clusters 1, 2, and 3 representing nitrogen-fixing strains of different host infection groups and cluster 4 representing atypical, generally non-nitrogen-fixing strains. Recently, quantitative PCR (qPCR)-based quantification methods have been developed for frankiae of clusters 1 and 3; however, similar approaches for clusters 2 and 4 were missing. We amended a database of partial 23S rRNA gene sequences of Frankia strains belonging to clusters 1 and 3 with sequences of frankiae representing clusters 2 and 4. The alignment allowed us to design primers and probes for the specific detection and quantification of these Frankia clusters by either Sybr Green- or TaqMan-based qPCR. Analyses of frankiae in different soils, all obtained from the same region in Illinois, USA, provided similar results, independent of the qPCR method applied, with abundance estimates of 10 x 105 to 15 x 105 cells (g soil)-1 depending on the soil. Diversity was higher in prairie soils (native, restored, and cultivated), with frankiae of all 4 clusters detected and those of cluster 4 dominating, while diversity in soils under Alnus glutinosa, a host plant for cluster 1 frankiae, or Betula nigra, a related nonhost plant, was restricted to cluster 1 and 3 frankiae and generally members of subgroup 1b were dominating. These results indicate that vegetation affects the basic composition of frankiae in soils, with higher diversity in prairie soils compared to much more restricted diversity under some host and nonhost trees. [ABSTRACT FROM AUTHOR]

Quantitative polymerase chain reaction (qPCR) was used to assess the abundance and relative distribution of host infection groups of the root-nodule forming, nitrogen-fixing actinomycete Frankia in four soils with similar physicochemical characteristics, two of which were vegetated with a host plant, Alnus glutinosa, and two with a non-host plant, Betula nigra. Analyses of DAPI-stained cells at three locations, i.e., at a distance of less than 1 m (near stem), 2.5 m (middle crown), and 3-5 m (crown edge) from the stems of both tree species revealed no statistically significant differences in abundance. Frankiae generally accounted for 0.01 to 0.04 % of these cells, with values between 4 and 36 × 10 cells (g soil). In three out of four soils, abundance of frankiae was significantly higher at locations 'near stem' and/or 'middle crown' compared to 'crown edge,' while numbers at these locations were not different in the fourth soil. Frankiae of the Alnus host infection group were dominant in all samples accounting for about 75 % and more of the cells, with no obvious differences with distance to stem. In three of the soils, all of these cells were represented by strain Ag45/Mut15. In the fourth soil that was vegetated with older A. glutinosa trees, about half of these cells belonged to a different subgroup represented by strain ArI3. In all soils, the remaining cells belonged to the Elaeagnus host infection group represented by strain EAN1pec. Casuarina-infective frankiae were not found. Abundance and relative distribution of Frankia host infection groups were similar in soils under the host plant A. glutinosa and the non-host plant B. nigra. Results did thus not reveal any specific effects of plant species on soil Frankia populations. [ABSTRACT FROM AUTHOR]

Impaired ecosystems are converted back to natural ecosystems or some other target stage by means of restoration and management. Due to their agricultural legacy, afforested fields might be valuable compensatory habitats for rare fungal species that require nutrient-rich forest soils. Using a large-scale field experiment in Finland, we studied community composition of macrofungi (agarics and boletes) on former fields, which had been afforested as monocultures 20 years ago using native spruce Picea abies, pine Pinus sylvestris, and birch Betula pendula. We studied the effect of soil quality, tree species, and site on community composition and structure. Many nutrient-demanding as well as rare fungal species were recorded, particularly from pine and spruce plots. Pine plots supported more nutrient-demanding fungi than birch plots. There was no relationship between soil pH, bulk density, P, N, or Ca, and species richness of nutrient-demanding fungi. Fungal community composition was more similar within sites than among sites for all tree species. Among sites, spruce plots had the smallest fungal species turnover, and birch plots largest. Within sites, however, fungal species turnover from plot to plot was similar among tree species. Our results indicate that tree species has a relatively mild influence on species composition of fungi after 20 years of succession. Interestingly, the results show that afforested fields can be valuable complementary habitats for rare, red-listed, and nutrient-demanding fungal species. Field afforestation is a potential conservation tool that could be used to complement the poor representation of rare habitat types in highly fragmented protected area networks. [ABSTRACT FROM AUTHOR]

Sedecula is a monotypic genus of hypogeous fungi that is rare and endemic to dry conifer forests of the western United States. The only known species, Sedecula pulvinata, was described in 1941 and its taxonomic placement and trophic status have remained uncertain ever since. Here we employ isotopic and molecular phylogenetic analyses to determine its nutritional mode and placement on the fungal tree of life. Phylogenetic analysis indicates that S. pulvinata is closely related to the genus Coniophora, in Coniophoraceae (Boletales). Stable isotope comparisons with known ectomycorrhizal and saprotrophic fungi together with phylogenetic evidence also suggest that S. pulvinata is saprotrophic. We conclude that Sedecula likely represents a unique morphological transition between a resupinate basidiocarp morphology (in Coniophora and relatives) and a hypogeous, sequestrate basidiocarp morphology (in Sedecula). Spore dimensions are amended from the original description. [ABSTRACT FROM AUTHOR]

The genus Sphaeroforma previously encompassed organisms isolated exclusively from animal symbionts in marine systems. The first saprotrophic sphaeroformids (Mesomycetozoea) isolated from non-animal hosts are described here. Sphaeroforma sirkka and S. napiecek are also the first species in the genus possessing endogenous DNA-containing motile propagules and central vacuoles, traits that have previously guided morphological differentiation of sphaeroformids from the genus Creolimax . Phylogenetic analysis of DNA sequences from the 18S rRNA and the ITS1-5.8S--ITS2 loci firmly place S. sirkka and S. napiecek within Sphaeroforma , extending the number of known species to six within this genus. The discovery of these species increases the geographical range, cellular variation and life history complexity of the sphaeroformids. [ABSTRACT FROM AUTHOR]

Although striking changes have been documented in plant and animal phenology over the past century, less is known about how the fungal kingdom's phenology has been changing. A few recent studies have documented changes in fungal fruiting in Europe in the last few decades, but the geographic and taxonomic extent of these changes, the mechanisms behind these changes, and their relationships to climate are not well understood. Here, we analyzed herbarium data of 274 species of fungi from Michigan to test the hypotheses that fruiting times of fungi depend on annual climate and that responses depend on taxonomic and functional groups. We show that the fungal community overall fruits later in warmer and drier years, which has led to a shift toward later fruiting dates for autumn-fruiting species, consistent with existing evidence. However, we also show that these effects are highly variable among species and are partly explained by basic life-history characteristics. Resulting differences in climate sensitivities are expected to affect community structure as climate changes. This study provides a unique picture of the climate dependence of fungal phenology in North America and an approach for quantifying how individual species and broader fungal communities will respond to ongoing climate change. [ABSTRACT FROM AUTHOR]

Abstract: Gloeoporus taxicola is a widespread saprotrophic polypore that occurs on a variety of coniferous substrata in the Northern Hemisphere. In this study a multi-locus sequencing approach was used, on an extensive worldwide sample, to investigate the phylogeography of G. taxicola with respect to substratum affinity. DNA sequences from two nuclear and one haploid mitochondrial marker gave a complex phylogeographic pattern that roughly divided the specimens into two evolutionary lineages, but some admixed and highly heterozygous sequences appeared as well in the diplophase data. To increase the resolution, cloning was performed and haplophase sequences obtained from the nuclear markers. This revealed three main clusters of haplotypes, one representing a European lineage associated with pine, while the other two had more northern circumboreal distributions, occurring on a wide number of substrata. Some specimens contained two highly divergent haplophase sequences, probably reflecting hybridization and further introgression between the separate evolutionary lineages. Despite the saprobic status of the fungus, there was a strong indication of different host affinity between the two main evolutionary lineages. [Copyright &y& Elsevier]

Abstract: Forest fires have been the major stand-replacing/modifying disturbance in boreal forests. To adapt to fire disturbance, different strategies have evolved. This study focuses on wood fungi, and a specific adaptation to forest fire: increased heat resistance in their mycelia. Fifteen species of wood fungi were selected and a priori sorted in two groups according to their prevalence in fire-affected environments. The fungi were cultivated on fresh wood and exposed to 100, 140, 180, 220 °C for 5, 10, 15, 20 and 25 min. under laboratory conditions. A clear difference was found among the two groups. Species prevalent in fire-affected habitats had a much higher survival rate over all combinations of time and temperature compared to species associated with other environments. Thus, the results indicate that fire adaptation in terms of increased heat resistance in mycelia occurs in some species of wood fungi. Such adaptation will influence the ecology and population dynamics of wood fungi, as well as having implications for best practices during restoration fires. [Copyright &y& Elsevier]

Tricholoma matsutake is an economically important ectomycorrhizal fungus of coniferous woodlands. Mycologists suspect that this fungus is also capable of saprotrophic feeding. In order to evaluate this hypothesis, enzyme and chemical assays were performed in the field and laboratory. From a natural population of T. matsutake in southern Finland, samples of soil-mycelium aggregate (shiro) were taken from sites of sporocarp formation and nearby control (PCR-negative) spots. Soil organic carbon and activity rates of hemicellulolytic enzymes were measured. The productivity of T. matsutake was related to the amount of utilizable organic carbon in the shiro, where the activity of xylosidase was significantly higher than in the control sample. In the laboratory, sterile pieces of bark from the roots of Scots pine were inoculated with T. matsutake and the activity rates of two hemicellulolytic enzymes (xylosidase and glucuronidase) were assayed. Furthermore, a liquid culture system showed how T. matsutake can utilize hemicellulose as its sole carbon source. Results linked and quantified the general relationship between enzymes secreted by T. matsutake and the degradation of hemicellulose. Our findings suggest that T. matsutake lives mainly as an ectomycorrhizal symbiont but can also feed as a saprotroph. A flexible trophic ecology confers T. matsutake with a clear advantage in a heterogeneous environment and during sporocarp formation. [ABSTRACT FROM AUTHOR]

Expression profiles were identified in the fungus Pochonia chlamydosporia, a biological control agent of plant parasitic nematodes, through a cDNA-amplified fragment length polymorphism approach. Two isolates with different host ranges, IMI 380407 and IMI 331547, were assayed in conditions of saprotrophic-to-parasitic transition, through in vitro assays. Gene expression profiles from three different nutritional conditions and four sampling times were generated, with eggs of host nematodes Globodera pallida and Meloidogyne incognita. Expression of transcripts changed in RNA fingerprints obtained under different nutritional stresses (starvation in presence/absence of eggs, or rich growth media). Transcript derived fragments (TDFs) obtained from the expression profiles corresponded to 6,800 products. A subset was sequenced and their expression profile confirmed through RT PCR. A total of 57 TDFs were selected for further analysis, based on similarities to translated or annotated sequences. Genes expressed during egg parasitism for both IMI 380407 and IMI 331547 were involved in metabolic functions, cellular signal regulation, cellular transport, regulation of gene expression, DNA repair, and other unknown functions. Multivariate analysis of TDF expression showed three groups for IMI 380407 and one for IMI 331547, each characterized by expression of genes related to eggs parasitism. Common amplification profiles among TDF clusters from both isolates also reflected a pool of constitutive genes, not affected by the nutritional conditions and nematode associations, related to general metabolic functions. The differential expression of parasitism related genes suggest a network of induced/repressed products, playing a role in fungal signaling and infection, with partial overlaps in host infection and parasitism traits. [ABSTRACT FROM AUTHOR]

Abstract: Consumption of wild growing mushrooms has been preferred to eating of cultivated fungi in many countries of central and Eastern Europe. Nevertheless, the knowledge of the nutritional value of wild growing mushrooms is limited. The present study reports the effects of trophism on mushrooms nutritional and nutraceutical potential. In vitro antioxidant properties of five saprotrophic (Calvatia utriformis, Clitopilus prunulus, Lycoperdon echinatum, Lyophyllum decastes, and Macrolepiota excoriata) and five mycorrhizal (Boletus erythropus, Boletus fragrans, Hygrophorus pustulatus, Russula cyanoxantha, and Russula olivacea) wild edible mushrooms were accessed and compared to individual compounds identified by chromatographic techniques. Mycorrhizal species revealed higher sugars concentration (16–42g/100g dw) than the saprotrophic mushrooms (0.4–15g/100g). Furthermore, fructose was found only in mycorrhizal species (0.2–2g/100g). The saprotrophic L. decastes, and the mycorrhizal species B. erythropus and B. fragrans gave the highest antioxidant potential, mainly due to the contribution of polar antioxidants such as phenolics and sugars. The bioactive compounds found in wild mushrooms give scientific evidence to traditional edible and medicinal uses of these species. [Copyright &y& Elsevier]

Abstract: Serpula himantioides is a widespread saprotrophic morphospecies mainly colonising coniferous wood in nature, but it appears frequently in buildings as well. From an earlier study, it is known that at least three divergent lineages occur within the S. himantioides species complex. In this study, a broader sample of S. himantioides isolates has been analysed by multi-locus sequencing, including new isolates from Asia, North and South America. Altogether five phylogenetical species (PS1–5) were detected, all recognised across independent gene phylogenies. A new southern South American phylogenetic species (PS1) was found, representing an early diverging lineage within the S. himantioides species complex. The two closely related PS2 and PS3 lineages included isolates from North America only, and PS4 was also dominated by North American isolates. Most of the investigated isolates (76%) clustered into PS5, a lineage that has been found on most continents, including North America. Overall, little phylogeographical structure was found in PS5, indicating frequent and recent long-distance dispersal events within this widespread lineage. Our analyses indicate that South and North America are the centres of divergence for the S. himantioides species complex. Some of the lineages seem adapted to various substrates, but PS5 is able to decay a wide array of angiosperms and gymnosperms, which may have facilitated the spread of this lineage throughout the world. [ABSTRACT FROM AUTHOR]

The Agaricomycotina are a phylogenetically diverse group of fungi that includes both saprotrophic and mycorrhizal species, and that form species – rich communities in forest ecosystems. Most species are infrequently observed, and this hampers assessment of the role that environmental heterogeneity plays in determining local community composition and in driving β-diversity. We used a combination of phenetic (TRFLP) and phylogenetic approaches [Unifrac and Net Relatedness Index (NRI)] to examine the compositional and phylogenetic similarity of Agaricomycotina communities in forest floor and surface soil of three widely distributed temperate upland forest ecosystems (one, xeric oak – dominated and two, mesic sugar maple dominated). Generally, forest floor and soil communities had similar phylogenetic diversity, but there was little overlap of species or evolutionary lineages between these two horizons. Forest floor communities were dominated by saprotrophic species, and were compositionally and phylogenetically similar in all three ecosystems. Mycorrhizal species represented 30% to 90% of soil community diversity, and these communities differed compositionally and phylogenetically between ecosystems. Estimates of NRI revealed significant phylogenetic clustering in both the forest floor and soil communities of only the xeric oak-dominated forest ecosystem, and may indicate that this ecosystem acts as a habitat filter. Our results suggest that environmental heterogeneity strongly influences the phylogenetic β-diversity of soil inhabiting Agaricomycotina communities, but has only a small influence on forest floor β-diversity. Moreover, our results suggest that the strength of community assembly processes, such as habitat filtering, may differ between temperate forest ecosystems. [ABSTRACT FROM AUTHOR]

Calostoma cinnabarinum Corda belongs to the suborder Sclerodermatineae (Boletales), which includes many well-known ectomycorrhizal basidiomycetes, but the genus Calostoma has been described as saprotrophic. This study combines isotopic, molecular, and morphological techniques to determine the mode of nutrition of C. cinnabarinum. δ13C and δ15N measurements were compared among co-occurring C. cinnabarinum, ectomycorrhizal fungi, saprotrophic fungi, and ectomycorrhizal plants. Isotopic profiles of C. cinnabarinum resembled those of ectomycorrhizal fungi but not those of saprotrophic fungi. For molecular analyses, ectomycorrhizal root tips were extracted from soil cores collected beneath C. cinnabarinum fruit bodies. Nuclear ribosomal internal transcribed spacer (nrITS) sequences were obtained from ectomycorrhizal root tips using fungal-specific primers and screened against C. cinnabarinum nrITS sequences. Ectomycorrhizal root tips had nrITS sequences that matched C. cinnabarinum fruiting bodies. Root tips colonized by C. cinnabarinum were also described morphologically. Several morphological characters were shared between fruiting bodies and ectomycorrhizal root tips of C. cinnabarinum. Results of isotopic, molecular, and morphological analyses indicate that C. cinnabarinum is ectomycorrhizal. Molecular analysis and observations of plant associations suggest that C. cinnabarinum forms ectomycorrhizae with Quercus. [ABSTRACT FROM AUTHOR]

Abstract: The degree to which ectomycorrhizal fungi rely on decomposing litter as a carbon source in natural ecosystems is unknown. We used a radiocarbon (14C) tracer to test for uptake of litter carbon by ectomycorrhizal fungi as part of the Enriched Background Isotope Study (EBIS) in Oak Ridge Reservation, Tennessee. In EBIS, leaf litter from a highly 14C-labeled Quercus alba (white oak) forest was reciprocally transplanted with litter from a nearby low-labeled forest that had not been as strongly exposed to 14C. These litter transplants were conducted yearly. We measured Δ14C signatures of ectomycorrhizal fungi collected from each forest four months and 2.25 years after the first litter transplant. The ectomycorrhizas were associated with white oak trees. We found no significant differences in 14C signatures of ectomycorrhizal fungi exposed to low-labeled versus high-labeled litter, indicating that less than 2% of the carbon in ectomycorrhizal biomass originated from transplanted litter. In contrast, ectomycorrhizal Δ14C signatures from the high-labeled forest were 117–140‰ higher than those from the low-labeled forest. This pattern suggests that ectomycorrhizal fungi acquired most (or all) of their carbon from their host plants, probably via direct transfer of photosynthate through the roots. [Copyright &y& Elsevier]

Witches' broom disease (WBD) is caused by the hemibiotrophic basidiomycete fungus Crinipellis perniciosa, which is one of the most important diseases of cocoa in the western hemisphere. In this study, the contents of soluble sugars, amino acids, alkaloids, ethylene, phenolics, tannins, flavonoids, pigments, malondialdehyde (MDA), glycerol, and fatty acids were analysed in cocoa (Theobroma cacao) shoots during the infection and development of WBD. Alterations were observed in the content of soluble sugars (sucrose, glucose, and fructose), asparagine and alkaloids (caffeine and theobromine), ethylene, and tannins. Ethylene and tannins increased prior to symptom development and declined with the death of the infected tissues. Furthermore, MDA and glycerol concentrations were higher in infected tissue than in the controls, while fatty acid composition changed in the infected tissues. Chlorophylls a and b were lower throughout the development of the disease while carotenoids and xanthophylls dropped in the infected tissue by the time of symptom development. These results show co-ordinated biochemical alterations in the infected tissues, indicating major stress responses with the production of ethylene. Ethylene levels are hypothesized to play a key role in broom development. Some of the other biochemical alterations are directly associated with ethylene synthesis and may be important for the modification of its effect on the infected tissues. [ABSTRACT FROM PUBLISHER]

© New Phytologist (2004) doi: 10.1111/j.1469-8137.2004.01068.x [ABSTRACT FROM AUTHOR]

A combination of experimentation and modelling is used to examine the role of epidemiological dynamics on the production and infectivity of inoculum and the efficiency of biocontrol by Trichoderma viride during consecutive epidemics of damping-off disease caused by the pathogen Rhizoctonia solani in crops of radish. Changes in the net infectivity of inoculum at the beginning of first and second crops caused a switch in epidemiological dynamics. Epidemics of first crops were dominated by secondary infection leading to amplification of inoculum so that epidemics of second crops were overwhelmingly determined by primary infection. The biocontrol agent reduced primary infection and hence parasitic amplification of inoculum in both first and second crops but the efficiency of control dropped from 91.7% in first crops to 64.8% in second crops, with sudden outbreaks of disease in second crops which had previously been disease-free. We conclude that parasitic amplification can cause a rapid build-up of disease and inoculum over consecutive crops, leading to loss in the efficiency of biocontrol. This form of inoculum production is supplemented by saprotrophic infestation which can result in sudden outbreaks of disease in protected crops where control of disease had previously been fully successful.

• Soil fungal communities (SFC) were determined by DNA barcoding-Illumina sequencing. • SFC differ among beech, conifer and mixed beech conifer stands. • Relative abundance of conifers, region, and soil chemistry shape SFC. • The guilds of saprotrophic fungi increased and mycorrhizas were unaffected by conifers. • Phylogenetically related fungal taxa show variable responses to site conditions. Soil fungi, especially the functional guilds of saprotrophs and symbiotrophs, play a central role in ecosystem processes such as decomposition and plant nutrient acquisition. Fungal communities are influenced by soil properties and management strategies such as tree species selection. Yet, the implications of the enrichment of temperate forests consisting of tree species in their native range with non-native tree species on soil fungal diversity and their functional groups are unknown. Here, we studied fungal communities in 40 plots (2500 m2 size per plot) located in two regions differing in site conditions (nutrient content, soil moisture and climate) in forests composed of European beech, spruce and Douglas-fir (non-native) and mixtures of beech with either spruce or Douglas-fir. We hypothesized that fungal community structures are driven by soil properties and tree species composition, generally resulting in higher fungal diversity in mixed than in mono-specific forests. We further hypothesized that Douglas-fir has a negative effect on ectomycorrhizal fungal species richness compared to native species, whereas saprotrophic fungal richness is unaffected. Fungal DNA barcoding and dissimilarity analyses showed significant separation of fungal communities between nutrient-rich and nutrient-poor regions and among forest types. Mycorrhizal species richness did not vary with forest type, but the relative abundance of mycorrhizal species was lower in Douglas-fir and mixed beech-Douglas-fir forests than in spruce or beech-spruce mixture forests. Conifer forests contained higher relative abundances of saprotrophic fungi than mono-specific beech forests. Among 16 abundant fungal orders in the soil, two containing saprotrophic fungi (Tremellales and Hymenochaetales) were enriched in conifer forests, regardless of site conditions and tree species mixture. The other fungal orders, including those dominated by mycorrhizal fungi (Russulales, Boletales, Atheliales and Cantharellales) showed variable patterns depending on site conditions and tree species. Our results show the impact of tree species composition and soil properties on soil fungi. The response of fungal guilds and taxa to forest types and soil properties can potentially influence nutrient fluxes. [ABSTRACT FROM AUTHOR]

The small fruitbodies of Chlorosplenium are greenish yellow and mainly grow on woody substrates. The species diversity of the genus in China was investigated based on specimens formerly deposited in the Herbarium Mycologicum Academiae Sinicae as well as new collections gained in recent years. Our phylogenetic results revealed the species diversity of the genus is underestimated and the commonly known Chlorosplenium chlora is a species complex. Based on morphology studies and sequence analyses of three regions (ITS, LSU and RPB1), the Chinese collections represent two new species which are described and illustrated here as C. sinicum and C. sinochlora. Chlorosplenium fusisporum is quite possibly a species of the genus Chlorociboria, and C. hyperici-maculati should be excluded from the genus. [ABSTRACT FROM AUTHOR]