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5. The Mixoplankton Database (MDB): Diversity of photo‐phago‐trophic plankton in form, function, and distribution across the global ocean

Author

Mitra, Aditee, Caron, David A, Faure, Emile, Flynn, Kevin J, Leles, Suzana Gonçalves, Hansen, Per J, McManus, George B, Not, Fabrice, do Rosario Gomes, Helga, Santoferrara, Luciana F, Stoecker, Diane K, Tillmann, Urban, Mitra, Aditee, Caron, David A, Faure, Emile, Flynn, Kevin J, Leles, Suzana Gonçalves, Hansen, Per J, McManus, George B, Not, Fabrice, do Rosario Gomes, Helga, Santoferrara, Luciana F, Stoecker, Diane K, and Tillmann, Urban

Abstract

Protist plankton are major members of open-water marine food webs. Traditionally divided between phototrophic phytoplankton and phagotrophic zooplankton, recent research shows many actually combine phototrophy and phagotrophy in the one cell; these protists are the “mixoplankton.” Under the mixoplankton paradigm, “phytoplankton” are incapable of phagotrophy (diatoms being exemplars), while “zooplankton” are incapable of phototrophy. This revision restructures marine food webs, from regional to global levels. Here, we present the first comprehensive database of marine mixoplankton, bringing together extant knowledge of the identity, allometry, physiology, and trophic interactivity of these organisms. This mixoplankton database (MDB) will aid researchers that confront difficulties in characterizing life traits of protist plankton, and it will benefit modelers needing to better appreciate ecology of these organisms with their complex functional and allometric predator–prey interactions. The MDB also identifies knowledge gaps, including the need to better understand, for different mixoplankton functional types, sources of nutrition (use of nitrate, prey types, and nutritional states), and to obtain vital rates (e.g. growth, photosynthesis, ingestion, factors affecting photo’ vs. phago’ -trophy). It is now possible to revisit and re-classify protistan “phytoplankton” and “zooplankton” in extant databases of plankton life forms so as to clarify their roles in marine ecosystems.

Published
2023

6. The Mixoplankton Database (MDB):Diversity of photo‐phago‐trophic plankton in form, function, and distribution across the global ocean

Author

Mitra, Aditee, Caron, David A., Faure, Emile, Flynn, Kevin J., Leles, Suzana Gonçalves, Hansen, Per J., McManus, George B., Not, Fabrice, Rosario Gomes, Helga do, Santoferrara, Luciana F., Stoecker, Diane K., Tillmann, Urban, Mitra, Aditee, Caron, David A., Faure, Emile, Flynn, Kevin J., Leles, Suzana Gonçalves, Hansen, Per J., McManus, George B., Not, Fabrice, Rosario Gomes, Helga do, Santoferrara, Luciana F., Stoecker, Diane K., and Tillmann, Urban

Abstract

Protist plankton are major members of open-water marine food webs. Traditionally divided between phototrophic phytoplankton and phagotrophic zooplankton, recent research shows many actually combine phototrophy and phagotrophy in the one cell; these protists are the “mixoplankton.” Under the mixoplankton paradigm, “phytoplankton” are incapable of phagotrophy (diatoms being exemplars), while “zooplankton” are incapable of phototrophy. This revision restructures marine food webs, from regional to global levels. Here, we present the first comprehensive database of marine mixoplankton, bringing together extant knowledge of the identity, allometry, physiology, and trophic interactivity of these organisms. This mixoplankton database (MDB) will aid researchers that confront difficulties in characterizing life traits of protist plankton, and it will benefit modelers needing to better appreciate ecology of these organisms with their complex functional and allometric predator–prey interactions. The MDB also identifies knowledge gaps, including the need to better understand, for different mixoplankton functional types, sources of nutrition (use of nitrate, prey types, and nutritional states), and to obtain vital rates (e.g. growth, photosynthesis, ingestion, factors affecting photo’ vs. phago’ -trophy). It is now possible to revisit and re-classify protistan “phytoplankton” and “zooplankton” in extant databases of plankton life forms so as to clarify their roles in marine ecosystems., Protist plankton are major members of open-water marine food webs. Traditionally divided between phototrophic phytoplankton and phagotrophic zooplankton, recent research shows many actually combine phototrophy and phagotrophy in the one cell; these protists are the “mixoplankton.” Under the mixoplankton paradigm, “phytoplankton” are incapable of phagotrophy (diatoms being exemplars), while “zooplankton” are incapable of phototrophy. This revision restructures marine food webs, from regional to global levels. Here, we present the first comprehensive database of marine mixoplankton, bringing together extant knowledge of the identity, allometry, physiology, and trophic interactivity of these organisms. This mixoplankton database (MDB) will aid researchers that confront difficulties in characterizing life traits of protist plankton, and it will benefit modelers needing to better appreciate ecology of these organisms with their complex functional and allometric predator–prey interactions. The MDB also identifies knowledge gaps, including the need to better understand, for different mixoplankton functional types, sources of nutrition (use of nitrate, prey types, and nutritional states), and to obtain vital rates (e.g. growth, photosynthesis, ingestion, factors affecting photo’ vs. phago’ -trophy). It is now possible to revisit and re-classify protistan “phytoplankton” and “zooplankton” in extant databases of plankton life forms so as to clarify their roles in marine ecosystems.

Published
2023

7. The Mixoplankton Database – diversity of photo‐phago‐trophic plankton in form, function and distribution across the global ocean

Author

Mitra, Aditee, primary, Caron, David A., additional, Faure, Emile, additional, Flynn, Kevin J., additional, Gonçalves Leles, Suzana, additional, Hansen, Per J., additional, McManus, George B., additional, Not, Fabrice, additional, do Rosario Gomes, Helga, additional, Santoferrara, Luciana, additional, Stoecker, Diane K., additional, and Tillmann, Urban, additional

Published
2023
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8. Ciliates — Protists with complex morphologies and ambiguous early fossil record

Author

Dunthorn, Micah, Lipps, Jere H., Dolan, John R., Saab, Marie Abboud-Abi, Aescht, Erna, Bachy, Charles, de Cao, María Sonia Barría, Berger, Helmut, Bourland, William A., Choi, Joong Ki, Clamp, John, Doherty, Mary, Gao, Feng, Gentekaki, Eleni, Gong, Jun, Hu, Xiaozhong, Huang, Jie, Kamiyama, Takashi, Johnson, Matthew D., Kammerlander, Barbara, Kim, Sun Young, Kim, Young-Ok, la Terza, Antonietta, Laval-Peuto, Michèle, Lipscomb, Diana, Lobban, Christopher S., Long, Hongan, Luporini, Pierangelo, Lynn, Denis H., Macek, Miroslav, Mansergh, Robert I., Martín-Cereceda, Mercedes, McManus, George G., Montagnes, David J.S., Ong'ondo, Geoffrey O., Patterson, David J., Pérez-Uz, Blanca, Quintela-Alonso, Pablo, Safi, Lúcia S.L., Santoferrara, Luciana F., Sonntag, Bettina, Song, Weibo, Stoeck, Thorsten, Stoecker, Diane K., Strüder-Kypke, Michaela C., Trautmann, Isabelle, Utz, Laura R.P., Vallesi, Adriana, Vd'ačný, Peter, Warren, Alan, Weisse, Thomas, Wickham, Stephen A., Yi, Zhenzhen, Zhang, Wuchang, Zhan, Zifeng, Zufall, Rebecca, and Agatha, Sabine

Published
2015
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11. CTD profiles collected with RV Connecticut on the Continental shelf and slope south of Montauk, NY on 14-15 June 2022.

Author

McManus, George, Santoferrara, Luciana, Katz, Laura A., McManus, George, Santoferrara, Luciana, and Katz, Laura A.

Abstract

Dataset: CTD profiles RV Connecticut June 2022, Seven stations on the shelf and slope south of Montauk, NY on 14-15 June 2022 were sampled. Basic hydrographic properties, including temperature, salinity, dissolved oxygen, and pH were measured and rosette samples were taken for chlorophyll, nutrients, and microplankton. Water was filtered for metagenomics and metatranscriptomics and picked individual microplankters for sequencing. Three to ten depths were sampled at each station. Our shallowest station was on the shelf at 38m and the deepest was at the slope edge at 2400m. Due to limitations of the CTD our deepest sampled depth was 1150m. At the two shallowest stations, we also deployed a Wetstar fluorometer for phytoplankton fluorescence. The CTD data were processed with SeaBird's Seasoft program and converted to spreadsheet format. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/879380, NSF Division of Ocean Sciences (NSF OCE) OCE-1924570, NSF Division of Ocean Sciences (NSF OCE) OCE-1924527

Published
2022

14. Temperature and salinity measured at the UConn dock in Groton, CT, USA, associated with DNA collection

Author

McManus, George, Katz, Laura A., Santoferrara, Luciana, McManus, George, Katz, Laura A., and Santoferrara, Luciana

Abstract

Dataset: Weekly dock samples, This dataset includes temperature and salinity measurements collected from the UConn dock in Groton CT, USA (41˚ 18' 59" N, 72˚ 03'39" W), in association with DNA collection. Measurements were made weekly from January 2020 to April 2021. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/854554, NSF Division of Ocean Sciences (NSF OCE) OCE-1924570, NSF Division of Ocean Sciences (NSF OCE) OCE-1924527

Published
2021

16. Additional file 1 of Three redescriptions in Tintinnopsis (Protista: Ciliophora: Tintinnina) from coastal waters of China, with cytology and phylogenetic analyses based on ribosomal RNA genes

Author

Bai, Yang, Wang, Rui, Song, Wen, Lifang Li, Santoferrara, Luciana F., and Xiaozhong Hu

Abstract

Additional file 1: Figure S1. Maximum likelihood (ML) tree inferred from concatenated rDNA loci (SSU rDNA, ITS1–5.8S-ITS2 and LSU rDNA) showing nodal support for ML and BI analyses. Newly sequenced species, i.e., Tintinnopsis hemispiralis, T. kiaochowensis, and T. uruguayensis are shown in bold. See Table S1 for GenBank accession numbers. All species possess SSU rDNA; species including ITS1–5.8S-ITS2 were marked with red stars; species including LSU rDNA were marked with green circles. Species with no marks include the three loci. Asterisks (*) reflect disagreements in topology between the BI and ML trees; black circles reflect fully-supported nodes. The scale bar corresponds to 0.1 expected substitutions per site. Table S1. List of sequences of concatenated tree. Newly sequenced species, i.e., Tintinnopsis hemispiralis, T. kiaochowensis, and T. uruguayensis are shown in bold.

Published
2020
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17. Perspectives from Ten Years of Protist Studies by High-Throughput Metabarcoding

Author

Santoferrara, Luciana, Burki, Fabien, Filker, Sabine, Logares, Ramiro, Dunthorn, Micah, McManus, George B., Santoferrara, Luciana, Burki, Fabien, Filker, Sabine, Logares, Ramiro, Dunthorn, Micah, and McManus, George B.

Abstract

During the last decade, high-throughput metabarcoding became routine for analyzing protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists have also identified and addressed technical and biological limitations, although problems still exist for inference of meaningful taxonomic and ecological knowledge based on shortDNAsequences. Given the extensive use of this approach, it is critical to settle our understanding on its strengths and weaknesses and to synthesize up-to-date methodological and conceptual trends. This article summarizes key scientific and technical findings, and identifies current and future directions in protist research that uses metabarcoding.

Published
2020
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18. Perspectives from Ten Years of Protist Studies by High‐Throughput Metabarcoding

Author

National Science Foundation (US), Science for Life Laboratory, Agencia Estatal de Investigación (España), Santoferrara, Luciana F., Burki, Fabien, Filker, Sabine, Logares, Ramiro, Dunthorn, Micah, McManus, George B., National Science Foundation (US), Science for Life Laboratory, Agencia Estatal de Investigación (España), Santoferrara, Luciana F., Burki, Fabien, Filker, Sabine, Logares, Ramiro, Dunthorn, Micah, and McManus, George B.

Abstract

During the last decade, high-throughput metabarcoding became routine for analyzing protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists have also identified and addressed technical and biological limitations, although problems still exist for inference of meaningful taxonomic and ecological knowledge based on short DNA sequences. Given the extensive use of this approach, it is critical to settle our understanding on its strengths and weaknesses and to synthesize up-to-date methodological and conceptual trends. This article summarizes key scientific and technical findings, and identifies current and future directions in protist research that uses metabarcoding

Published
2020

27. EukRef-Ciliophora: a manually curated, phylogeny-based database of small subunit rRNA gene sequences of ciliates

Author

Tula Foundation, National Science Foundation (US), National Natural Science Foundation of China, European Commission, Natural Sciences and Engineering Research Council of Canada, Boscaro, Vittorio, Santoferrara, Luciana F., Zhang, Qianqian, Gentekaki, Eleni, Syberg-Olsen, Mitchell J., Campo, Javier del, Keeling, Patrick J., Tula Foundation, National Science Foundation (US), National Natural Science Foundation of China, European Commission, Natural Sciences and Engineering Research Council of Canada, Boscaro, Vittorio, Santoferrara, Luciana F., Zhang, Qianqian, Gentekaki, Eleni, Syberg-Olsen, Mitchell J., Campo, Javier del, and Keeling, Patrick J.

Abstract

High-throughput sequencing (HTS) surveys, among the most common approaches currently used in environmental microbiology, require reliable reference databases to be correctly interpreted. The EukRef Initiative (eukref.org) is a community effort to manually screen available small subunit (SSU) rRNA gene sequences and produce a public, high-quality and informative framework of phylogeny-based taxonomic annotations. In the context of EukRef, we present a database for the monophyletic phylum Ciliophora, one of the most complex, diverse and ubiquitous protist groups. We retrieved more than 11 500 sequences of ciliates present in GenBank (28% from identified isolates and 72% from environmental surveys). Our approach included the inference of phylogenetic trees for every ciliate lineage and produced the largest SSU rRNA tree of the phylum Ciliophora to date. We flagged approximately 750 chimeric or low-quality sequences, improved the classification of 70% of GenBank entries and enriched environmental and literature metadata by 30%. The performance of EukRef-Ciliophora is superior to the current SILVA database in classifying HTS reads from a global marine survey. Comprehensive outputs are publicly available to make the new tool a useful guide for non-specialists and a quick reference for experts

Published
2018

28. EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution

Author

del Campo, Javier, primary, Kolisko, Martin, additional, Boscaro, Vittorio, additional, Santoferrara, Luciana F., additional, Nenarokov, Serafim, additional, Massana, Ramon, additional, Guillou, Laure, additional, Simpson, Alastair, additional, Berney, Cedric, additional, de Vargas, Colomban, additional, Brown, Matthew W., additional, Keeling, Patrick J., additional, and Wegener Parfrey, Laura, additional

Published
2018
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31. Beyond the “Code”: A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora)

Author

Warren, Alan, Patterson, David J., Dunthorn, Micah, Clamp, John C., Achilles Day, Undine E.M., Aescht, Erna, Al-Farraj, Saleh A., Al-Quraishy, Saleh, Al-Rasheid, Khaled, Carr, Martin, G. Day, John, Dellinger, Marc, El-Serehy, Hamed A., Fan, Yangbo, Gao, Feng, Gao, Shan, Gong, Jun, Gupta, Renu, Hu, Xiaozhong, Kamra, Komal, Langlois, Gaytha, Lin, Xiaofeng, Lipscomb, Diana, Lobban, Christopher S., Luporini, Pierangelo, Lynn, Denis H., Ma, Honggang, Macek, Miroslav, Mackenzie-Dodds, Jacqueline, Makhija, Seema, Mansergh, Robert I., Martín Cereceda, María Mercedes, McMiller, Nettie, Montagnes, David J.S., Nikolaeva, Svetlana, Ong'ondo, Geoffrey Odhiambo, Pérez Uz, María Blanca, Purushothaman, Jasmine, Quintela Alonso, Pablo, Rotterová, Johana, Santoferrara, Luciana, Shao, Chen, Shen, Zhuo, Shi, Xinlu, Song, Weibo, Stoeck, Thorsten, Terza, Antonietta La, Vallesi, Adriana, Wang, Mei, Weisse, Thomas, Wiackowski, Krzysztof, Wu, Lei, Xu, Kuidong, Yi, Zhenzhen, Zufall, Rebecca, Agatha, Sabine, Warren, Alan, Patterson, David J., Dunthorn, Micah, Clamp, John C., Achilles Day, Undine E.M., Aescht, Erna, Al-Farraj, Saleh A., Al-Quraishy, Saleh, Al-Rasheid, Khaled, Carr, Martin, G. Day, John, Dellinger, Marc, El-Serehy, Hamed A., Fan, Yangbo, Gao, Feng, Gao, Shan, Gong, Jun, Gupta, Renu, Hu, Xiaozhong, Kamra, Komal, Langlois, Gaytha, Lin, Xiaofeng, Lipscomb, Diana, Lobban, Christopher S., Luporini, Pierangelo, Lynn, Denis H., Ma, Honggang, Macek, Miroslav, Mackenzie-Dodds, Jacqueline, Makhija, Seema, Mansergh, Robert I., Martín Cereceda, María Mercedes, McMiller, Nettie, Montagnes, David J.S., Nikolaeva, Svetlana, Ong'ondo, Geoffrey Odhiambo, Pérez Uz, María Blanca, Purushothaman, Jasmine, Quintela Alonso, Pablo, Rotterová, Johana, Santoferrara, Luciana, Shao, Chen, Shen, Zhuo, Shi, Xinlu, Song, Weibo, Stoeck, Thorsten, Terza, Antonietta La, Vallesi, Adriana, Wang, Mei, Weisse, Thomas, Wiackowski, Krzysztof, Wu, Lei, Xu, Kuidong, Yi, Zhenzhen, Zufall, Rebecca, and Agatha, Sabine

Abstract

Recent advances in molecular technology have revolutionized research on all aspects of the biology of organisms, including ciliates, and created unprecedented opportunities for pursuing a more integrative approach to investigations of biodiversity. However, this goal is complicated by large gaps and inconsistencies that still exist in the foundation of basic information about biodiversity of ciliates. The present paper reviews issues relating to the taxonomy of ciliates and presents specific recommendations for best practice in the observation and documentation of their biodiversity. This effort stems from a workshop that explored ways to implement six Grand Challenges proposed by the International Research Coordination Network for Biodiversity of Ciliates (IRCN-BC). As part of its commitment to strengthening the knowledge base that supports research on biodiversity of ciliates, the IRCN-BC proposes to populate The Ciliate Guide, an online database, with biodiversity-related data and metadata to create a resource that will facilitate accurate taxonomic identifications and promote sharing of data., U.S. National Science Foundation, National Natural Science Foundation of China, Depto. de Genética, Fisiología y Microbiología, Fac. de Ciencias Biológicas, TRUE, pub

Published
2017

35. Beyond the “Code”: A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora)

Author

Warren, Alan, primary, Patterson, David J., additional, Dunthorn, Micah, additional, Clamp, John C., additional, Achilles-Day, Undine E.M., additional, Aescht, Erna, additional, Al-Farraj, Saleh A., additional, Al-Quraishy, Saleh, additional, Al-Rasheid, Khaled, additional, Carr, Martin, additional, Day, John G., additional, Dellinger, Marc, additional, El-Serehy, Hamed A., additional, Fan, Yangbo, additional, Gao, Feng, additional, Gao, Shan, additional, Gong, Jun, additional, Gupta, Renu, additional, Hu, Xiaozhong, additional, Kamra, Komal, additional, Langlois, Gaytha, additional, Lin, Xiaofeng, additional, Lipscomb, Diana, additional, Lobban, Christopher S., additional, Luporini, Pierangelo, additional, Lynn, Denis H., additional, Ma, Honggang, additional, Macek, Miroslav, additional, Mackenzie-Dodds, Jacqueline, additional, Makhija, Seema, additional, Mansergh, Robert I., additional, Martín-Cereceda, Mercedes, additional, McMiller, Nettie, additional, Montagnes, David J.S., additional, Nikolaeva, Svetlana, additional, Ong'ondo, Geoffrey Odhiambo, additional, Pérez-Uz, Blanca, additional, Purushothaman, Jasmine, additional, Quintela-Alonso, Pablo, additional, Rotterová, Johana, additional, Santoferrara, Luciana, additional, Shao, Chen, additional, Shen, Zhuo, additional, Shi, Xinlu, additional, Song, Weibo, additional, Stoeck, Thorsten, additional, La Terza, Antonietta, additional, Vallesi, Adriana, additional, Wang, Mei, additional, Weisse, Thomas, additional, Wiackowski, Krzysztof, additional, Wu, Lei, additional, Xu, Kuidong, additional, Yi, Zhenzhen, additional, Zufall, Rebecca, additional, and Agatha, Sabine, additional

Published
2017
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37. Updating Biodiversity Studies in Loricate Protists: The Case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea)

Author

Santoferrara, Luciana F., primary, Bachy, Charles, additional, Alder, Viviana A., additional, Gong, Jun, additional, Kim, Young‐Ok, additional, Saccà, Alessandro, additional, da Silva Neto, Inácio D., additional, Strüder‐Kypke, Michaela C., additional, Warren, Alan, additional, Xu, Dapeng, additional, Yi, Zhenzhen, additional, and Agatha, Sabine, additional

Published
2016
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39. <italic>Dartintinnus alderae</italic> n. g., n. sp., a Brackish Water Tintinnid (Ciliophora, Spirotrichea) with Dual‐ended Lorica Collapsibility.

Author

Smith, Susan A., Song, Wen, Gavrilova, Nelly A., Kurilov, Alexander V., Liu, Weiwei, McManus, George B., and Santoferrara, Luciana F.

Subjects
CILIATA, REPRODUCTIVE isolation, MOLECULAR phylogeny, RIBOSOMAL RNA, PLANKTON
Abstract

Abstract: A tintinnid ciliate isolated from waters of the Thames River (Connecticut, USA) is described through combined in vivo observation, protargol impregnation, and phylogenetic analysis. The novel genus Dartintinnus and its type species, D. alderae are distinct from established tintinnid taxa by a lorica that collapses on both anterior and posterior ends. Dartintinnus is placed in the family Eutintinnidae based on a hyaline, elongated lorica opened at both ends, a ciliary pattern including a ventral kinety, at least one dorsal kinety, and right, left and lateral fields, and a sister relationship with Eutintinnus in gene trees. Main differences between D. alderae and Eutintinnus species include a 5.5–6.5% divergence in the small subunit rRNA gene, the geometry of the lorica (resembling an isosceles tetrahedron when collapsed vs. a cylinder, respectively), the number of macronuclear nodules (two vs. four), and the number of dorsal kineties (one vs. usually two). Considering the features of the new genus, we improve the diagnosis of the family Eutintinnidae, including the presence of a lateral ciliary field that had been overlooked in some Eutintinnus species. This work exemplifies the potential for novel diversity, even in these relatively well‐studied protists, and the importance of an integrated approach for the description of tintinnid taxa. [ABSTRACT FROM AUTHOR]

Published
2018
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42. Morphological variability, spatial distribution and abundance of Helicostomella species (Ciliophora: Tintinnina) in relation to environmental factors (Argentine shelf; 40-55°S)

Author

Santoferrara, Luciana F. and Alder, Viviana A.

Subjects
tintinnids, genus Helicostomella, lorica polymorphism, abundance, shelf dynamics, fronts, environmental factors, tintinidos, genero Helicostomella, polimorfismo de la loriga, abundancia, dinamica de plataformas marinas, frentes, factores ambientales
Abstract

For the first time a taxonomic and ecological study of species belonging to Helicostomella was performed over a mesoscale spatial distribution by examining ca. 3000 loricae collected in Argentine shelf waters during the austral autumn. Microscopic and statistical analysis revealed that the general shape and the oral diameter remained practically constant in the whole area surveyed, despite a continuous length fluctuation of ca. 300 µm, which includes the entire range present in eight previously reported species. Consequently, we consider that the genus may be represented only by H. subulata, whose strong fluctuations in length (mostly attributed to an increase in the collar length), density and biomass seem to respond to temperature, food availability and front-related processes. In Buenos Aires coastal waters associated with a quasi permanent estuarine front (40-40.5°S), mixed conditions would favour moderate abundances of long loricae, whereas in northern (42.5-45.5°S) and southern (46-54.5°S) Patagonian waters, high (103 ind. L-1) and low (< 5 ind. L-1) densities of short loricae seem to be a consequence of stratification and encystment, respectively. The non-occurrence of the species at 41-42°S, together with a three-fold reduction in length-related parameters between specimens from Buenos Aires and Patagonian waters, suggests a disjunct distribution., Se realizo el primer estudio taxonómico y ecológico de mesoescala sobre las especies del genero Helicostomella, examinando ca. 3000 lorigas colectadas en el Mar Argentino durante el otoño austral. Los análisis microscópicos y estadísticos revelaron que la forma general de la loriga y su diámetro oral permanecen prácticamente constantes en toda el area analizada, mientras que su longitud presenta una variación de ca. 300 μm, incluyendo todo el rango correspondiente a 8 especies previamente reportadas. En consecuencia, el genero estaría representado por una única especie, H. subulata, cuyas variaciones en longitud (atribuidas principalmente a la longitud del cuello), densidad y biomasa responderían a la temperatura, disponibilidad y calidad del alimento y procesos frontales. En aguas costeras de Buenos Aires asociadas a un frente estuarino casi permanente (40-40.5°S), las condiciones de mezcla favorecerían el desarrollo de lorigas largas en abundancias moderadas, mientras que en aguas del Norte (42.5-45.5°S) y del Sur (46-54.5°S) de la Patagonia prevalecen lorigas cortas en densidades elevadas (103 ind. L-1) o muy bajas (< 5 ind. L-1) como consecuencia de procesos de estratificación y enquistamiento, respectivamente. La no detección de la especie entre 41-42ºS, junto con la reducción en 3 veces de los parámetros relacionados con la longitud entre especimenes de las aguas de Buenos Aires y las Patagonicas, sugiere una distribución separada entre ambas áreas.

Published
2009
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47. De Novo Transcriptomes of a Mixotrophic and a Heterotrophic Ciliate from Marine Plankton.

Author

Santoferrara, Luciana F., Guida, Stephanie, Zhang, Huan, and McManus, George B.

Subjects
*GENETIC transcription, *CILIATA, *MARINE plankton, *RNA sequencing, *OLIGOTRICHIDA, *ALGAE as food, *REACTIVE oxygen species
Abstract

Studying non-model organisms is crucial in the context of the current development of genomics and transcriptomics for both physiological experimentation and environmental characterization. We investigated the transcriptomes of two marine planktonic ciliates, the mixotrophic oligotrich Strombidium rassoulzadegani and the heterotrophic choreotrich Strombidinopsis sp., and their respective algal food using Illumina RNAseq. Our aim was to characterize the transcriptomes of these contrasting ciliates and to identify genes potentially involved in mixotrophy. We detected approximately 10,000 and 7,600 amino acid sequences for S. rassoulzadegani and Strombidinopsis sp., respectively. About half of these transcripts had significant BLASTP hits (E-value <10−6) against previously-characterized sequences, mostly from the model ciliate Oxytricha trifallax. Transcriptomes from both the mixotroph and the heterotroph species provided similar annotations for GO terms and KEGG pathways. Most of the identified genes were related to housekeeping activity and pathways such as the metabolism of carbohydrates, lipids, amino acids, nucleotides, and vitamins. Although S. rassoulzadegani can keep and use chloroplasts from its prey, we did not find genes clearly linked to chloroplast maintenance and functioning in the transcriptome of this ciliate. While chloroplasts are known sources of reactive oxygen species (ROS), we found the same complement of antioxidant pathways in both ciliates, except for one enzyme possibly linked to ascorbic acid recycling found exclusively in the mixotroph. Contrary to our expectations, we did not find qualitative differences in genes potentially related to mixotrophy. However, these transcriptomes will help to establish a basis for the evaluation of differential gene expression in oligotrichs and choreotrichs and experimental investigation of the costs and benefits of mixotrophy. [ABSTRACT FROM AUTHOR]

Published
2014
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48. Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences

Author

Fenton P.D. Cotterill, Fernanda P. Werneck, Stephen W. Chordas, Enrique González-Soriano, Pierangelo Luporini, Santiago Claramunt, Santosh Kumar, Adriano B. Kury, Marcelo José Sturaro, Atsushi Tominaga, Marcos Gonçalves Lhano, Giulio Cuccodoro, Bernardo F. Santos, Alejandro Oceguera-Figueroa, Klaus Henle, Giovanni B. Delmastro, Thibaut Delsinne, Jeremy A. Miller, Thomas Ziegler, Ishan Agarwal, Rodrigo M. Feitosa, Robert C. Glotzhober, Giuliano Doria, Adeline Soulier-Perkins, Diego Baldo, Valéria da Cunha Tavares, Danilo Pacheco Cordeiro, Eli Greenbaum, Carlos Alberto Santos de Lucena, Stuart V. Nielsen, Jörn Köhler, Fernando Pacheco Rodrigues, Justin C. Bagley, Shun Ichiro Naomi, Gustavo Hormiga, Geoffrey Odhiambo Ong'ondo, Aurélien Miralles, Alexandre Uarth Christoff, Florian M. Steiner, Matthias Glaubrecht, Victor Van Cakenberghe, Wolfgang Rabitsch, Jack W. Sites, Norma J. Salcedo, Mario Alberto Cozzuol, Ward C. Wheeler, Krister T. Smith, Brian Tilston Smith, Ignacio Jose De La Riva De La Viña, Leo J. Borkin, Ângelo Parise Pinto, Marivene R. Manuel-Santos, Ana Carolina Pavan, M. J. Alves, Dan Cogălniceanu, Luciana F. Santoferrara, James M. Carpenter, Thierry Deuve De Resbecq, Beat Schätti, Jean Pierre Vacher, John G. Day, Ray C. Schmidt, Otto M. P. Oliveira, Lázaro Guevara, Jean-Lou Justine, Karthikeyan Vasudevan, Donat Agosti, Cécile Mourer-Chauviré, Brett C. Ratcliffe, Birgit C. Schlick-Steiner, Sebastian Kvist, Nathan K. Lujan, Robert Alexander Pyron, Rosana M. Rocha, Roberto Poggi, José A. Langone, Larry Lee Grismer, Václav Gvoždík, Natsuhiko Yoshikawa, Thaís P. Miranda, Elizabeth Prendini, Abel Pérez-González, Katharina C. Wollenberg Valero, Jean-Yves Rasplus, Cristiano R. Moreira, Antonietta La Terza, Fabio Siqueira Pitaluga de Godoi, Michael W. Holmes, Thomas E. Lacher, Ronald H. Pine, Matthew P. Heinicke, Steven M. Goodman, John D. Lynch, Elöd Kondorosy, Anderson Feijó, Orfeo Picariello, Wolfgang Denzer, Stefano Valdesalici, Aléssio Datovo, Jean Pierre Hugot, Yuri L. R. Leite, Heinz Grillitsch, Hernán Ortega, Dimitri Forero, Jean Carlos Santos, Marie Claude Durette-Desset, Victor H. Gonzalez, Mrugank Prabhu, Walter E. Schargel, Beate Röll, Caleb D. McMahan, Mitsuru Kuramoto, Edson A. Adriano, Jérôme Constant, Richard Laval, María A. Mendoza-Becerril, Cédric d'Udekem d'Acoz, Alain Didier Missoup, Frank Tillack, Janet K. Braun, Lindsey Swierk, André L. Netto-Ferreira, Xiaofeng Lin, Karl Heinz Jungfer, Fabio Di Dario, Vanessa Kruth Verdade, Pavel Štys, Franco Andreone, Andrés A. Ojanguren-Affilastro, Manuel Ruedi, Didier Van den Spiegel, Rahul Khot, Lars Krogmann, Lance Grande, Robert C. Drewes, Luis M. P. Ceríaco, Jeffrey W. Streicher, Jacob A. Esselstyn, Josiah H. Townsend, Wolfgang Arthofer, Wiesław Bogdanowicz, Marcos A. Raposo, Omar Torres-Carvajal, Dirk Ahrens, Theo Blick, Carlos DoNascimiento, Eric Drouet, Claudia Patricia Ornelas-García, Gervásio Silva Carvalho, Zachary H. Falin, Gaetano Odierna, Michael Maia Mincarone, Sabine Agatha, Christian De Muizon, Célio F. B. Haddad, Pablo Rodrigues Gonçalves, Maarten P.M. Vanhove, Ronald Janssen, Ulrich Burkhardt, Bernard Landry, Paúl M. Velazco, Melanie L. J. Stiassny, Erna Aescht, Sarah Siqueira Oliveira, Koshiro Eto, Thomas van de Kamp, Fabio Cianferoni, Leonardo Ferreira Machado, Luiz Carlos Pinho, Dennis Rödder, Fábio Raposo do Amaral, Shan Gao, Paulo Passos, Nikolai L. Orlov, Emanuel Tschopp, Bert Van Bocxlaer, Roman Hołyński, Isabella Van De Velde, Indraneil Das, Luciano Damián Patitucci, Daniel J. Bennett, Annemarie Ohler, Rachunliu G. Kamei, Patrick Grootaert, Tony Robillard, Jun Gong, Massimo Delfino, Antonio C. Marques, Daizy Bharti, Ira Richling, José L. O. Birindelli, Thiago Borges Fernandes Semedo, Philippe Grandcolas, Eric J. Sargis, Andreas Taeger, Jesús Molinari, Link E. Olson, Christoph Kucharzewski, Luc Janssens de Bisthoven, José P. Pombal, Ryan C. McKellar, Serge Gofas, Mário C. C. de Pinna, Kristofer M. Helgen, Pablo Quintela-Alonso, Marcos Tavares, Wolfgang A. Nässig, Jodi J. L. Rowley, Jairo Arroyave, Fabio Maria Guarino, Djoko T. Iskandar, Martin Fikáček, Joel Cracraft, Robert M. Timm, Lassad Neifar, Marcelo C. Andrade, Moisés Escalona, Max Kieckbusch, George R. Zug, J. V. Remsen, Weibo Song, Paula Beatriz Araujo, Marco Brandalise de Andrade, Luiz Alexandre Campos, Eva V. Bärmann, Thomas Lehmann, Thorsten Stoeck, Jorge Salazar-Bravo, Charles Morphy D. Santos, Joël Minet, Mann Kyoon Shin, Gustavo A. Bravo, Felipe Franco Curcio, Antoine Pariselle, Hidetoshi Ota, David R. Luz, Abdulaziz S. Alqarni, Joseph A. Cook, Cameron D. Siler, Zilda Margarete Seixas de Lucena, Guarino R. Colli, Máriom A. Carvajal, Franziska Bauer, Yves Samyn, Luke Tornabene, Stefan Merker, Favízia Freitas de Oliveira, Murilo N. L. Pastana, Luís Fábio Silveira, Moira Jane FitzPatrick, Stephen D. Busack, Max R. Lambert, Julián Faivovich, Masafumi Matsui, Bernhard A. Huber, Alexandre Aleixo, Mariana P. Marques, Jean-François Trape, Marcello Guimarães Simões, Brian L. Fisher, Brandi S. Coyner, Michael F. Bates, Marcelo Salles Rocha, Silke Schweiger, Jean Raffaëlli, Vladimir Dinets, Paulo C. A. Garcia, Devanshu Gupta, Juan M. Guayasamin, W. Brian Simison, Rudy Jocqué, Aniruddha Datta-Roy, Marcelo R. Britto, Cristiane Bastos-Silveira, Celso O. Azevedo, Roger Bour, Aidin Niamir, Leandro M. Vieira, Mark Epstein, Neal Woodman, Marcelo R. de Carvalho, José Antonio González-Orej, Martin Kruger, Ulisses Caramaschi, Marcus Guidoti, Cibele Biondo, Scott Lyell Gardner, François Dusoulier, Francisco Langeani, John E. Lattke, Helen M. Barber-James, Jan Zima, Guilherme R. R. Brito, Ricardo Moratelli, Stylianos Chatzimanolis, Carlos José Einicker Lamas, John B. Iverson, Maria Hołyńska, Aaron M. Bauer, Luc Brendonck, Klaus-Peter Koepfli, Angelica Crottini, Cristian Hernan Fulvio Perez, Tiago Georg Pikart, Eliécer E. Gutiérrez, Luis García-Prieto, Lawrence R. Heaney, Thomas A. Munroe, Thomas C. Giarla, Laurie J. Vitt, Enrico Borgo, Antonio J. C. Aguiar, Sven O. Kullander, Jean Sébastien Steyer, Marcial Quiroga-Carmona, Matthew J. Miller, Kraig Adler, Werner Conradie, Enrique La Marca, Thomas Schmitt, Dieter Uhl, Mario de Vivo, Rainer Hutterer, Silvio Shigueo Nihei, Perry L. Wood, Amira Chaabane, Tim Tokaryk, Octávio Mateus, Andrés Sebastián Quinteros, Daniel S. Fernandes, Alexandra Cartaxana, Pedro F. Victoriano, Ernest C.J. Seamark, William R. Branch, Mark-Oliver Rödel, Diego Astúa, Marcio R. Pie, Julien Pétillon, Henrard Arnaud, Hossein Rajaei, Sushil K. Dutta, Hussam Zaher, Hernández Díaz Yoalli Quetzalli, Martin Carr, Renan Carrenho, Estefanía Rodríguez, Robert Trusch, Patrick David, Rafaela Lopes Falaschi, Rafael O. de Sá, Miguel Ângelo Marini, Varad B. Giri, Jean-Claude Rage, Guilherme S. T. Garbino, Björn Berning, Thierry Frétey, Vítor de Q. Piacentini, Paulo A. Buckup, David C. Lees, Alfred L. Gardner, Marco Pavia, Pablo Ricardo Mulieri, Lorenzo Prendini, Eliana M. Cancello, Cinthia Chagas, Bruce B. Collette, Leigh R. Richards, Eduardo I. Faúndez, Timothy J. Colston, Thomas Keith Philips, Miguel Trefaut Rodrigues, Renato Gregorin, Karin Meißner, Nathan S. Upham, A. Townsend Peterson, Tiago Kütter Krolow, Felipe Ferraz Figueiredo Moreira, Olivier Montreuil, Leandro M. Sousa, Thomas Weisse, Natalia B. Ananjeva, Donald C. Taphorn, Renata Stopiglia, Marcelo Duarte, Benoit Guénard, Cyril Gallut, Giovanni Boano, David Modrý, Erik Verheyen, Jonas José Mendes Aguiar, Sven Mecke, Alexandre Hassanin, Robert M. Zink, Marcello Mezzasalma, André Silva Roza, Reginaldo Constantino, Alice Hirschmann, Ulisses Pinheiro, Edmundo González-Santillán, Carlos A. Mendoza-Palmero, Tom Artois, Fernando J. M. Rojas-Runjaic, Kailas Chandra, Pablo Teta, Michael Karner, Esteban O. Lavilla, Mauricio Ortega-Andrade, Alexandra Marçal Correia, Deepak Veerappan, Daniela M. Takiya, Bolívar R. Garcete-Barrett, Alexander Kupfer, Sérgio N. Stampar, Daniel Burckhardt, Michael S. Engel, Teresa Kearney, Silvia E. Pavan, Luiz Roberto Malabarba, Mark D. Scherz, Pedro L. V. Peloso, Christiane Denys, Matthias F. Geiger, Alexander Pelzer, Jose G. Tello, Fabio S. Nascimento, Juan D. Daza, Franger J. García, Cinthia A. Brasileiro, Martín J. Ramírez, Marcos Pérsio Dantas Santos, Twan A. A. M. Leenders, Alain Canard, Tomáš Mazuch, Axel Hausmann, Flávio Alicino Bockmann, Prosanta Chakrabarty, Jasmine Purushothaman, Ara Monadjem, David A. Donoso, Kaushik Deuti, Stephen Mahony, Duke S. Rogers, Don E. Wilson, Julian C. Kerbis Peterhans, Jader Marinho-Filho, Alain Dubois, Marcio Luiz de Oliveira, Jan Decher, John M. Midgley, Fernando C. Jerep, Bastian Bentlage, Ivan Löbl, Gregory J. Watkins-Colwell, Uwe Fritz, Annamaria Nistri, Lúcia H. Rapp Py-Daniel, Bruce D. Patterson, Peter J. Taylor, Burton K. Lim, James L. Patton, Colin S. Schoeman, Stéphane Grosjean, Ismael Franz, Cristian Simón Abdala, John S. Sparks, Marcos R. Bornschein, Leonora Pires Costa, Martín O. Pereyra, João Filipe Riva Tonini, Richard Schodde, Blanca Pérez-Luz, Cristiano Feldens Schwertner, Peter Jäger, Marcin Jan Kamiński, Philipp Wagner, Jakob Hallermann, Hendrik Freitag, Olavi Kurina, Laure Desutter-Grandcolas, Romain Garrouste, Pedro De Podestà Uchôa de Aquino, Guillermo D’Elía, Sharlene E. Santana, Roberto E. Reis, Wouter Dekoninck, Sushma Reddy, Alfred L. Rosenberger, James R. McCranie, Wolfgang Böhme, Ricardo C. Benine, Cyrille D'Haese, Paulo H. F. Lucinda, Jacques H. C. Delabie, Carr, Martin, Department of Biology, Northern Arizona University [Flagstaff], Museu Nacional de Historia Natural e da Ciencia, Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade de Brasilia [Brasília] (UnB), National Museum of Natural History, National Museum of Natural History - Leiden, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-Université Pierre et Marie Curie - Paris 6 (UPMC)-École pratique des hautes études (EPHE)-Centre National de la Recherche Scientifique (CNRS), École pratique des hautes études (EPHE), Université Pierre et Marie Curie (Paris 6), Centre National de la Recherche Scientifique (CNRS), Sorbonne Universités, Universidad Nacional de Tucumán (UNT), King Saud University, Cornell University, Universidade Federal de São Paulo, Austrian Museum, Villanova University, Universität Salzburg, Plazi, University of São Paulo, Zoologisches Forschungsmuseum Alexander Koenig, Museu Paraense Emílio Goeldi, Russian Academy of Sciences, Federal University of Para - Universidade Federal do Para [Belem - Brésil], Pontificia Universidade Catolica do Rio Grande do Sul (PUCRS), Museo Regionale di Scienze Naturali, Universidade Federal do Rio Grande do Sul [Porto Alegre] (UFRGS), Royal Museum for Central Africa [Tervuren] (RMCA), Universidad Nacional Autónoma de México (UNAM), Institute of Ecology, Technische Universität Berlin (TUB), Hasselt University, Universidade Federal de Pernambuco [Recife] (UFPE), Universidade Federal do Espírito Santo (UFES), Institut de Recherche pour le Développement (IRD [Nouvelle-Calédonie]), Albany Museum, National Museum, Senckenberg Naturhistorische Sammlungen, Universidade Estadual Paulista Júlio de Mesquita Filho [São José do Rio Preto] (UNESP), Stephen F. Austin State University, Smithsonian Institution, Tyrolean State Museum, Università di Camerino, Universidade Federal do ABC, Museu de Zoologia da Universidade Estadual de Londrina, Senckenberg Research Institute, Museo Civico di Storia Naturale, Muzeum i Instytut Zoologii Polskiej Akademii Nauk, Russian Academy of Sciences [Moscow] (RAS), Port Elizabeth Museum, Sam Noble Museum, Harvard University [Cambridge], North West University, Museu Nacional do Rio de Janeiro, Musée d'Histoire Naturelle de Bâle, Senckenberg Museum [Frankfurt], North Carolina Museum of Natural Sciences, Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES), Museu de Zoologia (MZ), Universidade de São Paulo (USP), American Museum of Natural History, University of Huddersfield, North Dakota State University (NDSU), Faculté des Sciences de Sfax, Université de Sfax - University of Sfax, Departamento de Polícia Técnico Científica (DPTC), Museum of Natural Science, Louisiana State University (LSU), Zoological Survey of India, University of Tennessee System, Ohio State University [Columbus] (OSU), Museu de Ciências Naturais, Universidade Luterana do Brasil (ULBRA), Museo di Storia Naturale, Università degli Studi di Firenze, Ovidius University of Constanta, The University of Mississippi [Oxford], Royal Belgian Institute of Natural Sciences (RBINS), The University of New Mexico [Albuquerque], Instituto Nacional de Pesquisas da Amazônia (INPA), University of Stellenbosh, Universidade Federal de Minas Gerais, Centro de Investigaçao em Biodiversidade e Recursos Genéticos, Museum d'Histoire Naturelle, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Muséum national d'Histoire naturelle (MNHN)-Université Pierre et Marie Curie - Paris 6 (UPMC)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL), Université Pierre et Marie Curie - Paris 6 (UPMC), Sorbonne Université (SU), King Saud University [Riyadh] (KSU), Cornell University [New York], Villanova University [USA], Universidade de São Paulo = University of São Paulo (USP), Museu Paraense Emílio Goeldi [Belém, Brésil] (MPEG), the Russian Academy of Sciences [Moscow, Russia] (RAS), Federal University of Para - Universidade Federal do Pará - UFPA [Belém, Brazil] (UFPA), Universidad Nacional Autónoma de México = National Autonomous University of Mexico (UNAM), Technical University of Berlin / Technische Universität Berlin (TU), Hasselt University (UHasselt), Universidade Federal do Espirito Santo (UFES), Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University (UNESP), Università degli Studi di Camerino = University of Camerino (UNICAM), Harvard University, North-West University [Potchefstroom] (NWU), Université de Rennes (UR), American Museum of Natural History (AMNH), Museo di Storia Naturale di Firenze, Università degli Studi di Firenze = University of Florence (UniFI), Stellenbosch University, Museum d'Histoire Naturelle [Genève] (MHN), Ceríaco, Luis M. P., Gutiérrez, Eliécer E., Dubois, Alain, Abdala, Cristian Simón, Alqarni, Abdulaziz S., Adler, Kraig, Adriano, Edson A., Aescht, Erna, Agarwal, Ishan, Agatha, Sabine, Agosti, Donat, Aguiar, Antonio J. C., Aguiar, Jonas José Mende, Ahrens, Dirk, Aleixo, Alexandre, Alves, Maria Judite, Do Amaral, Fabio Raposo, Ananjeva, Natalia, Andrade, Marcelo C., De Andrade, Marco Brandalise, Andreone, Franco, Aquino, Pedro P. U., Araujo, Paula Beatriz, Arnaud, Henrard, Arroyave, Jairo, Arthofer, Wolfgang, Artois, Tom J., Astúa, Diego, Azevedo, Celso, Bagley, Justin C., Baldo, Diego, Barber James, Helen Margaret, Bärmann, Eva V., Bastos Silveira, Cristiane, Bates, Michael F., Bauer, Aaron M., Bauer, Franziska, Benine, Ricardo C., Bennett, Daniel J., Bentlage, Bastian, Berning, Björn, Bharti, Daizy, Biondo, Cibele, Birindelli, José, Blick, Theo, Boano, Giovanni, Bockmann, Flávio A., Bogdanowicz, Wieslaw, Böhme, Wolfgang, Borgo, Enrico, Borkin, Leo, Bornschein, Marcos Ricardo, Bour, Roger, Branch, William R., Brasileiro, Cinthia A., Braun, Janet K., Bravo, Gustavo A., Brendonck, Luc, Brito, Guilherme R. R., Britto, Marcelo R., Buckup, Paulo A., Burckhardt, Daniel, Burkhardt, Ulrich, Busack, Stephen D., Campos, Luiz A., Canard, Alain, Cancello, Eliana M., Caramaschi, Ulisse, Carpenter, James M., Carrenho, Renan, Cartaxana, Alexandra, Carvajal, Mariom A., Carvalho, Gervásio Silva, De Carvalho, Marcelo Rodrigue, Chaabane, Amira, Chagas, Cinthia, Chakrabarty, Prosanta, Chandra, Kaila, Chatzimanolis, Styliano, Chordas, Stephen W., Christoff, Alexandre U., Cianferoni, Fabio, Claramunt, Santiago, Cogãlniceanu, Dan, Collette, Bruce B., Colli, Guarino R., Colston, Timothy J., Conradie, Werner, Constant, Jérôme, Constantino, Reginaldo, Cook, Joseph A., Cordeiro, Danilo, Correia, Alexandra Marçal, Cotterill, Fenton P. D., Coyner, Brandi, Cozzuol, Mario A., Cracraft, Joel, Crottini, Angelica, Cuccodoro, Giulio, Curcio, Felipe Franco, D'Udekem D'Acoz, Cédric, D'Elía, Guillermo, D'Haese, Cyrille, Das, Indraneil, Datovo, Aléssio, Datta Roy, Aniruddha, David, Patrick, Day, John G., Daza, Juan D., De Bisthoven, Luc Janssen, De La Riva De La Viña, Ignacio Jose, De Muizon, Christian, De Pinna, Mario, Piacentini, Vítor De Q., De Sá, Rafael O., De Vivo, Mario, Decher, Jan, Dekoninck, Wouter, Delabie, Jacques H. C., Delfino, Massimo, Delmastro, Giovanni B., Delsinne, Thibaut, Denys, Christiane, Denzer, Wolfgang, Desutter Grandcolas, Laure, Deuti, Kaushik, De Resbecq, Thierry Deuve, Di Dario, Fabio, Dinets, Vladimir, Donascimiento, Carlo, Donoso, David A., Doria, Giuliano, Drewes, Robert C., Drouet, Eric, Duarte, Marcelo, Durette Desset, Marie Claude, Dusoulier, Françoi, Dutta, Sushil Kumar, Engel, Michael S., Epstein, Mark, Escalona, Moisé, Esselstyn, Jacob A., Eto, Koshiro, Faivovich, Julián, Falaschi, Rafaela Lope, Falin, Zachary H., Faundez, Eduardo I., Feijó, Anderson, Feitosa, Rodrigo M., Fernandes, Daniel Silva, Fikáček, Martin, Fisher, Brian L., Fitzpatrick, Moira J., Forero, Dimitri, Franz, Ismael, Freitag, Hendrik, Frétey, Thierry, Fritz, Uwe, Gallut, Cyril, Gao, Shan, Garbino, Guilherme S. T., Garcete Barrett, Bolívar R., García Prieto, Lui, García, Franger J., Garcia, Paulo C. A., Gardner, Alfred L., Gardner, Scott Lyell, Garrouste, Romain, Geiger, Matthias F., Giarla, Thomas C., Giri, Varad, Glaubrecht, Matthia, Glotzhober, Robert C., Godoi, Fabio S. P., Gofas, Serge, Gonçalves, Pablo R., Gong, Jun, Gonzalez, Victor H., González Orej, José Antonio, González Santillán, Edmundo, González Soriano, Enrique, Goodman, Steven M., Grandcolas, Philippe, Grande, Lance, Greenbaum, Eli, Gregorin, Renato, Grillitsch, Heinz, Grismer, Larry Lee, Grootaert, Patrick, Grosjean, Stéphane, Guarino, FABIO MARIA, Guayasamin, Juan M., Guénard, Benoit, Guevara, Lázaro, Guidoti, Marcu, Gupta, Devanshu, Gvoždík, Václav, Haddad, Célio F. B., Hallermann, Jakob, Hassanin, Alexandre, Hausmann, Axel, Heaney, Lawrence R., Heinicke, Matthew P., Helgen, Kristofer M., Henle, Klau, Hirschmann, Alice, Holmes, Michael W., Hołyńska, Maria, Hołyński, Roman, Hormiga, Gustavo, Huber, Bernhard A., Hugot, Jean Pierre, Hutterer, Rainer, Iskandar, Djoko, Iverson, John B., Jäger, Peter, Janssen, Ronald, Jerep, Fernando, Jocqué, Rudy, Jungfer, Karl Heinz, Justine, Jean Lou, Kamei, Rachunliu G., Kamiński, Marcin Jan, Karner, Michael, Kearney, Teresa, Khot, Rahul, Kieckbusch, Max, Köhler, Jörn, Koepfli, Klaus Peter, Kondorosy, Elöd, Krogmann, Lar, Krolow, Tiago Kütter, Krüger, Martin, Kucharzewski, Christoph, Kullander, Sven O., Kumar, Santosh, Kupfer, Alexander, Kuramoto, Mitsuru, Kurina, Olavi, Kury, Adriano, Kvist, Sebastian, La Marca, Enrique, La Terza, Antonietta, Laval, Richard, Lacher, Thomas E., Lamas, Carlos J. E., Lambert, Max R., Landry, Bernard, Langeani, Francisco, Langone, José A., Lattke, John E., Lavilla, Esteban O., Leenders, Twan, Lees, David C., Leite, Yuri L. R., Lehmann, Thoma, Lhano, Marcos Gonçalve, Lim, Burton K., Lin, Xiaofeng, Löbl, Ivan, De Lucena, Carlos A. S., De Lucena, Zilda Margarete S., Lucinda, Paulo, Lujan, Nathan K., Luporini, Pierangelo, Luz, David R., Lynch, John D., Machado, Leonardo Ferreira, Mahony, Stephen, Malabarba, Luiz R., Manuel Santos, Marivene, Marinho Filho, Jader, Marini, Miguel Â., Marques, Antonio Carlo, Marques, Mariana P., Mateus, Octávio, Matsui, Masafumi, Mazuch, Tomáš, Mccranie, Jame, Mckellar, Ryan C., Mcmahan, Caleb D., Mecke, Sven, Meißner, Karin, Mendoza Becerril, María A., Mendoza Palmero, Carlos A., Merker, Stefan, Mezzasalma, Marcello, Midgley, John Mark, Miller, Jeremy, Miller, Matthew J., Mincarone, Michael Maia, Minet, Joël, Miralles, Aurélien, Miranda, Thaís P., Missoup, Alain Didier, Modrý, David, Molinari, Jesú, Monadjem, Ara, Montreuil, Olivier, Moratelli, Ricardo, Moreira, Cristiano Rangel, Moreira, Felipe F. F., Mourer Chauviré, Cécile, Mulieri, Pablo Ricardo, Munroe, Thomas A., Naomi, Shun Ichiro, Nascimento, Fabio, Nässig, Wolfgang A., Neifar, Lassad, Netto Ferreira, Andre L., Niamir, Aidin, Nielsen, Stuart V., Nihei, Silvio S., Nistri, Annamaria, Oceguera Figueroa, Alejandro, Odierna, Gaetano, Ohler, Annemarie, Ojanguren Affilastro, Andres A., De Oliveira, Favízia Freita, De Oliveira, Marcio Luiz, De Oliveira, Otto Müller Patrão, Oliveira, Sarah Siqueira, Olson, Link E., Ong'Ondo, Geoffrey O., Orlov, Nikolai, Ornelas García, Claudia Patricia, Ortega, Hernan, Ortega Andrade, Mauricio, Ota, Hidetoshi, Pariselle, Antoine, Passos, Paulo, Pastana, Murilo N. L., Patterson, Bruce D., Patitucci, Luciano D., Patton, James L., Pavan, Ana C., Pavan, Silvia E., Pavia, Marco, Peloso, Pedro L. V., Pelzer, Alexander, Pereyra, Martín O., Perez Gonzalez, Abel, Pérez Luz, Blanca, Pérez, Cristian Hernan Fulvio, Peterhans, Julian Kerbi, Peterson, A. Townsend, Pétillon, Julien, Philips, Thomas Keith, Picariello, ORFEO LUCIO ANTONIO, Pie, Marcio R., Pikart, Tiago G., Pine, Ronald H., Pinheiro, Ulisse, Pinho, Luiz Carlo, Pinto, Ângelo P., Costa, Leonora Pire, Poggi, Roberto, Pombal, José P., Prabhu, Mrugank, Prendini, Elizabeth, Prendini, Lorenzo, Purushothaman, Jasmine, Pyron, Robert Alexander, Quintela Alonso, Pablo, Quinteros, Andres Sebastian, Quiroga Carmona, Marcial, Rabitsch, Wolfgang, Raffaëlli, Jean, Rage, Jean Claude, Rajaei, Hossein, Ramírez, Martín J., Raposo, Marcos A., Py Daniel, Lucia H. Rapp, Rasplus, Jean Yve, Ratcliffe, Brett C., Reddy, Sushma, Reis, Roberto E., Remsen, James V., Richards, Leigh R., Richling, Ira, Robillard, Tony, Rocha, Marcelo Salle, Rocha, Rosana Moreira, Rödder, Denni, Rödel, Mark Oliver, Rodrigues, Fernando P., Rodriguez, Estefania, Rogers, Duke S., Rojas Runjaic, Fernando J. M., Röll, Beate, Rosenberger, Alfred L., Rowley, Jodi, Roza, André Silva, Ruedi, Manuel, Salazar Bravo, Jorge, Salcedo, Norma J., Samyn, Yve, Santana, Sharlene E., Santoferrara, Luciana, Santos, Bernardo F., Santos, Charles Morphy D., Santos, Jean Carlo, Santos, Marcos Pérsio Danta, Sargis, Eric J., Schargel, Walter E., Schätti, Beat, Scherz, Mark D., Schlick Steiner, Birgit C., Schmidt, Ray C., Schmitt, Thoma, Schodde, Richard, Schoeman, Colin S., Schweiger, Silke, Schwertner, Cristiano F., Seamark, Ernest C. J., Semedo, Thiago B. F., Shin, Mann Kyoon, Siler, Cameron D., Silveira, Luís Fábio, Simison, W. Brian, Simões, Marcello, Sites, Jack W., Smith, Brian Tilston, Smith, Krister T., Song, Weibo, Soulier Perkins, Adeline, Sousa, Leandro M., Sparks, John S., Stampar, Sérgio N., Steiner, Florian M., Steyer, Jean Sébastien, Stiassny, Melanie L. J., Stoeck, Thorsten, Stopiglia, Renata, Streicher, Jeffrey W., Sturaro, Marcelo J., Stys, Pavel, Swierk, Lindsey, Taeger, Andrea, Takiya, Daniela M., Taphorn, Donald C., Tavares, Marco, Tavares, Valeria Da C., Taylor, Peter John, Tello, Jose G., Teta, Pablo, Tillack, Frank, Timm, Robert M., Tokaryk, Tim, Tominaga, Atsushi, Tonini, João Filipe Riva, Tornabene, Luke, Torres Carvajal, Omar, Townsend, Josiah, Trape, Jean Françoi, Rodrigues, Miguel Trefaut, Trusch, Robert, Tschopp, Emanuel, Uhl, Dieter, Upham, Nathan S., Vacher, Jean Pierre, Valdesalici, Stefano, Van Bocxlaer, Bert, Van Cakenberghe, Victor, Van De Kamp, Thoma, Van De Velde, Isabella, Van Den Spiegel, Didier, Vanhove, Maarten P. M., Vasudevan, Karthikeyan, Veerappan, Deepak, Velazco, Paúl M., Verdade, Vanessa K., Verheyen, Erik, Vieira, Leandro M., Victoriano, Pedro F., Vitt, Laurie J., Wagner, Philipp, Watkins Colwell, Gregory J., Weisse, Thoma, Werneck, Fernanda P., Wheeler, Ward C., Wilson, Don E., Valero, Katharina C. Wollenberg, Wood, Perry Lee, Woodman, Neal, Quetzalli, Hernández Díaz Yoalli, Yoshikawa, Natsuhiko, Zaher, Hussam, Ziegler, Thoma, Zima, Jan, Zink, Robert M., Zug, George, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Technische Universität Berlin (TU), Università degli Studi di Camerino (UNICAM), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Universidade de Brasília, Institut de Systématique, Evolution, Biodiversité ( ISYEB ), Muséum National d'Histoire Naturelle ( MNHN ) -Université Pierre et Marie Curie - Paris 6 ( UPMC ) -Centre National de la Recherche Scientifique ( CNRS ) -École pratique des hautes études ( EPHE ), Ecole Pratique des Hautes Etudes ( EPHE ), Centre National de la Recherche Scientifique ( CNRS ), Universidad Nacional de Tucumán, Villanova University [Philadelphie], University of Salzburg, Museu Paraense Emilio Goeldi, Universidade Federal do Pará, Pontificia Universidade Catolica do Rio Grande do Sul ( PUCRS ), Universidade Federal do Rio Grande do Sul ( UFRGS ), Royal Museum for Central Africa, Universidad Nacional Autónoma de México ( UNAM ), Technical University of Berlin, Universidade Federal de Pernambuco ( UFPE ), Universidade Federal do Espírito Santo ( UFES ), Institut de Recherche pour le Développement ( IRD [Nouvelle-Calédonie] ), Universidade Estadual Paulista Julio de Mesquita Filho ( UNESP ), Russian Academy of Sciences [Moscow] ( RAS ), Senckenberg Museum, Université de Rennes 1 ( UR1 ), Université de Rennes ( UNIV-RENNES ), Museu de Zoologia ( MZ ), Universidade de São Paulo ( USP ), North Dakota State University ( NDSU ), Departamento de Polícia Técnico Científica ( DPTC ), Louisiana State University ( LSU ), University of Tennessee, Ohio State University [Columbus] ( OSU ), Universidade Luterana do Brasil ( ULBRA ), University of Mississippi, Royal Belgian Institute of Natural Sciences ( RBINS ), University of New Mexico, Instituto Nacional de Pesquisas da Amazônia, Centre de Biologie pour la Gestion des Populations ( CBGP ), Centre de Coopération Internationale en Recherche Agronomique pour le Développement ( CIRAD ) -Centre international d'études supérieures en sciences agronomiques ( Montpellier SupAgro ) -Institut national de la recherche agronomique [Montpellier] ( INRA Montpellier ) -Université de Montpellier ( UM ) -Institut de Recherche pour le Développement ( IRD [France-Sud] ) -Institut national d’études supérieures agronomiques de Montpellier ( Montpellier SupAgro ), Federal Agency for the Safety of the Food Chain, Ceríaco, Luis M., Gutiérrez, Eliécer, Dubois, Alan Alqarni, Abdulaziz, Buckup, Paulo, Simón Abdala, Cristian, Algarni, abdulaziz, A. Adriano, Edson, Erna, Aescht, Villanova Univ, Museu Nacl Hist Nat & Ciencia, Universidade de Brasília (UnB), Smithsonian Inst, Sorbonne Univ, Univ Nacl Tucuman, King Saud Univ, Cornell Univ, Universidade Federal de São Paulo (UNIFESP), Upper Austrian Museum, Univ Salzburg, Zool Forsch Museum A Koenig, Russian Acad Sci, Pontificia Univ Catolica Rio Grande do Sul, Museo Reg Sci Nat, Univ Fed Rio Grande do Sul, Royal Museum Cent Africa, Univ Nacl Autonoma Mexico, Univ Innsbruck, Hasselt Univ, Universidade Federal de Pernambuco (UFPE), Univ Nacl Misiones, Natl Museum, Senckenberg Nat Hist Sammlungen, Universidade Estadual Paulista (Unesp), Stephen F Austin State Univ, Landesmuseum, Univ Camerino, Universidade Federal do ABC (UFABC), Universidade Estadual de Londrina (UEL), Senckenberg Res Inst, Museo Civ Storia Nat, Polskiej Akad Nauk, Harvard Univ, North West Univ, Museu Nacl, Nat Hist Museum, Senckenberg Nat Kundemuseum, North Carolina Museum Nat Sci, Univ Rennes 1, Amer Museum Nat Hist, Univ Huddersfield, North Dakota State Univ, Fac Sci Sfax, DPTC PC, Louisiana State Univ, Zool Survey India, Univ Tennessee, Ohio State Univ, Univ Luterana Brasil, Univ Firenze, Univ Ovidius Constanta, Univ Mississippi, Royal Belgian Inst Nat Sci, Univ New Mexico, Inst Nacl de Pesquisas da Amazonia, Univ Stellenbosch, Universidade Federal de Minas Gerais (UFMG), CIBIO Ctr Invest Biodiversidade & Recursos Genet, Museum Hist Nat, Universidade Federal de Mato Grosso do Sul (UFMS), Univ Austral Chile, Univ Malaysia, Indian Inst Sci, Scottish Assoc Marine Sci, Sam Houston State Univ, Museo Nacl Ciencias Nat, Drexel Univ, Univ Richmond, Ctr Pesquisas Cacau, Univ Torino, Soc Hist Nat Alcide dOrbigny, Wolfden Sci Consulting, Universidade Federal do Rio de Janeiro (UFRJ), Inst Humboldt, Escuela Politec Nacl, Calif Acad Sci, Museum Dept Hist Nat Var, Nat Environm & Wildlife Soc, Univ Kansas, Kyoto Univ, Consejo Nacl Invest Cient & Tecn, Univ Fed Paraiba, Univ Fed Parana, Nat Hist Museum Narodini Museum, Nat Hist Museum Zimbabwe, Ateneo Manila Univ, Pontificia Univ Javeriana, RACINE, Univ Paris 06, Ocean Univ China, Museo Nacl Hist Nat Paraguay, Univ Carabobo, Natl Ctr Biol Sci, Univ Nebraska, CENAK Ctr Nat Kunde, Ohio Hist Connect, Univ Fed Amazonas, Univ Malaga, Chinese Acad Sci, Benemerita Univ Autonoma Puebla, Natl Polytech Inst, Field Museum Nat Hist, Univ Texas El Paso, Universidade Federal de Lavras (UFLA), La Sierra Univ, Univ San Francisco Quito, Univ Hong Kong, CUNY, CAS, Zool Staatssammlung Munchen, Univ Michigan, Helmholtz Ctr Environm Res, Santa Rosa Jr Coll, George Washington Univ, Inst Teknol Bandung, Earlham Coll, Senckenberg Forschungsinst & Nat Museum, Univ Koblenz Landau, Ditsong Natl Museum Nat Hist, Bombay Nat Hist Soc, Philipps Univ Marburg, Hess Landesmuseum, Smithsonian Conservat Biol Inst, Univ Pannonia, Staatliches Museum Nat Kunde, UFT, Museum Nat Kunde, Nat Hist Riksmuseet, Hikarigaoka, Inst Agr & Environm Sci, Univ Los Andes, Bat Jungle, Texas A&M Univ, Yale Univ, Museo Nacl Hist Nat, Roger Tory Peterson Inst Nat Hist, Univ Fed Reconcavo Bahia, South China Normal Univ, Museu Ciencias Tecnol PUCRS, Univ Fed Tocantins, Univ Toronto, Univ Nacl Colombia, Natl Museum Philippines, NOVA Univ Lisbon, Royal Saskatchewan Museum, Deutsch Zentrum Marine Biodiversitatsforsch, Ctr Invest Biol Noroeste, Naturalis Biodivers Ctr, Univ Douala, Vet & Farmaceut Univ Brno, Univ Swaziland, Fundacao Oswaldo Cruz, Univ Claude Bernard, Museum Vertebrate Zool, Nat Hist Museum & Inst, Senckenberg Biodiversitat & Klima Forschunsgzentr, Marquette Univ, Universidade Federal da Bahia (UFBA), Fed Univ ABC, Universidade Federal de Goiás (UFG), Univ Alaska Museum, Egerton Univ, Museo Hist Nat, IKIAM Univ Reg Amazon, Univ Hyogo, Inst Rech Dev, Niedersachs Landesbetrieb Wasserwirtschaft Kusten, Univ Complutense Madrid, Roosevelt Univ, Western Kentucky Univ, Univ Naples Federico II, Univ Fed Acre, Universidade Federal de Santa Catarina (UFSC), Inst Bio & Geociencias Noroeste Argentino, Inst Venezolano Invest Cient, Umweltbundesamt, Penclen, CNRS MNHN UPMC, Staatl Museum Nat Kunde, Ctr Biol Gest Populat INRA, Loyola Univ Chicago, Pontificia Univ Catolica Rio do Sul, Durban Museum Nat Sci, Univ Estado Amazonas, Brigham Young Univ, Museo Hist Nat La Salle, Univ Vet Med Hannover, Australian Museum, Texas Tech Univ, Francis Marion Univ, Univ Washington, Univ Connecticut, Universidade Federal de Uberlândia (UFU), Fed Univ Para, Yale Peabody Museum, Univ Texas Arlington, Senckenberg Deutsch Entomol Inst, CSIRO, Univ Venda, Univ Ulsan, Senckenberg Forsch Inst & Nat Museum, Univ Fed Para, UPMC, Tech Univ Kaiserslautern, Charles Univ Prague, Univ Nacl Expt los Llanos Occident Ezequiel Zamor, Long Isl Univ, Univ Ryukyus, Pontificia Univ Catolica Ecuador, Indiana Univ Penn, IRD, State Museum Nat Hist Karlsruhe, Univ Toulouse III Paul Sabatier, Univ Ghent, Univ Antwerp, Karlsruhe Inst Technol, Ctr Cellular & Mol Biol, Yale Peabody Museum Nat Hist, Bethune Cookman Univ, Natl Museum Nat & Sci, and Zool Garten Koln

Subjects
0106 biological sciences, [SDV]Life Sciences [q-bio], Rebuttal, 010607 zoology, Biology, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Q1, 010603 evolutionary biology, 01 natural sciences, Biological Science Disciplines, FOTOGRAFIA, Photography, Animals, Animal species, Biological sciences, QH426, Ecology, Evolution, Behavior and Systematics, ComputingMilieux_MISCELLANEOUS, Taxonomy, QL, [ SDV ] Life Sciences [q-bio], Ecology, [SDV.BA]Life Sciences [q-bio]/Animal biology, Biodiversity, Classification, Ecology, Evolution, Behavior and Systematic, Taxonomy (biology), Animal Science and Zoology, Classics
Abstract

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Janeiro, Macae, Brazil Univ Tennessee, Knoxville, TN USA Inst Humboldt, Villa De Leyva, Colombia Escuela Politec Nacl, Quito, Ecuador Calif Acad Sci, San Francisco, CA 94118 USA Museum Dept Hist Nat Var, Toulon, France Nat Environm & Wildlife Soc, Angul, India Univ Kansas, Lawrence, KS 66045 USA Kyoto Univ, Kyoto, Japan Consejo Nacl Invest Cient & Tecn, Museo Argentino Ciencias Nat Bernardino Rivadavia, Buenos Aires, DF, Argentina Univ Fed Paraiba, Joao Pessoa, Paraiba, Brazil Univ Fed Parana, Curitiba, Parana, Brazil Univ Fed Rio de Janeiro, Rio De Janeiro, Brazil Nat Hist Museum Narodini Museum, Prague, Czech Republic Nat Hist Museum Zimbabwe, Bulawayo, Zimbabwe Ateneo Manila Univ, Quezon City, Philippines Pontificia Univ Javeriana, Bogota, Colombia RACINE, St Maugan, France Univ Paris 06, Sorbonne Univ Paris, ISYEB, Paris, France Ocean Univ China, Qingdao, Peoples R China Museo Nacl Hist Nat Paraguay, San Lorenzo, Paraguay Univ Carabobo, Valencia, Venezuela Natl Ctr Biol Sci, Bengaluru, India Univ Nebraska, Lincoln, NE USA CENAK Ctr Nat Kunde, Hamburg, Germany Ohio Hist Connect, Columbus, OH USA Univ Fed Amazonas, Manaus, Amazonas, Brazil Univ Malaga, Malaga, Spain Chinese Acad Sci, Qingdao, Shandong, Peoples R China Benemerita Univ Autonoma Puebla, Puebla, Mexico Natl Polytech Inst, Ctr Res & Adv Studies, Irapuato, Mexico Field Museum Nat Hist, Chicago, IL 60605 USA Univ Texas El Paso, El Paso, TX 79968 USA Univ Fed Lavras, Lavras, Brazil Nat Hist Museum, Vienna, Austria La Sierra Univ, Riverside, CA USA Univ San Francisco Quito, Quito, Ecuador Univ Hong Kong, Hong Kong, Peoples R China CUNY, New York, NY 10021 USA CAS, Inst Vertebrate Biol, Brno, Czech Republic Sorbonne Univ, MECADEV, Museum Natl Hist Nat, Paris, France Univ Estadual Paulista, Rio Claro, Brazil Zool Staatssammlung Munchen, Munich, Germany Univ Michigan, Dearborn, MI 48128 USA Smithsonian Inst, Natl Museum Nat Hist, Washington, DC USA Helmholtz Ctr Environm Res, Leipzig, Germany Santa Rosa Jr Coll, Santa Rosa, CA USA George Washington Univ, Washington, DC 20037 USA Inst Teknol Bandung, Bandung, Indonesia Earlham Coll, Richmond, IN USA Senckenberg Forschungsinst & Nat Museum, Frankfurt, Germany Univ Estadual Londrina, Londrina, Parana, Brazil Univ Koblenz Landau, Koblenz, Germany Nat Hist Museum, London, England Ditsong Natl Museum Nat Hist, Pretoria, South Africa Bombay Nat Hist Soc, Bombay, Maharashtra, India Philipps Univ Marburg, Marburg, Germany Hess Landesmuseum, Darmstadt, Germany Smithsonian Conservat Biol Inst, Washington, DC USA Univ Pannonia, Keszthely, Hungary Staatliches Museum Nat Kunde, Stuttgart, Germany UFT, Tocantins, Portugal Museum Nat Kunde, Berlin, Germany Nat Hist Riksmuseet, Stockholm, Sweden Hikarigaoka, Munakata, Japan Inst Agr & Environm Sci, Tartu, Estonia Univ Los Andes, Merida, Venezuela Bat Jungle, Monteverde, Costa Rica Texas A&M Univ, College Stn, TX USA Yale Univ, New Haven, CT USA Univ Estadual Paulista, Sao Jose Do Rio Preto, Brazil Museo Nacl Hist Nat, Montevideo, Uruguay Consejo Nacl Invest Cient & Tecn, Fdn Miguel Lillo, San Miguel De Tucuman, Argentina Roger Tory Peterson Inst Nat Hist, Jamestown, VA USA Univ Fed Reconcavo Bahia, Cruz Das Almas, Brazil South China Normal Univ, Guangzhou 510631, Guangdong, Peoples R China Museu Ciencias Tecnol PUCRS, Porto Alegre, RS, Brazil Univ Fed Tocantins, Porto Nacl, Brazil Univ Toronto, Scarborough, ON, Canada Univ Nacl Colombia, Inst Ciencias Nat, Bogota, Colombia Natl Museum Philippines, Manila, Philippines NOVA Univ Lisbon, Caparica, Portugal Royal Saskatchewan Museum, Regina, SK, Canada Deutsch Zentrum Marine Biodiversitatsforsch, Hamburg, Germany Ctr Invest Biol Noroeste, La Paz, Mexico Naturalis Biodivers Ctr, Leiden, Netherlands Univ Douala, Douala, Cameroon Vet & Farmaceut Univ Brno, Brno, Czech Republic Univ Swaziland, Kwaluseni, Eswatini Fundacao Oswaldo Cruz, Rio De Janeiro, Brazil Univ Claude Bernard, Lyon, France Museum Vertebrate Zool, Berkeley, CA USA Smithsonian Inst, Washington, DC 20560 USA Nat Hist Museum & Inst, Chiba, Japan Senckenberg Biodiversitat & Klima Forschunsgzentr, Frankfurt, Germany Marquette Univ, Milwaukee, WI 53233 USA Univ Firenze, Museo Storia Nat, Florence, Italy Univ Fed Bahia, Salvador, BA, Brazil Fed Univ ABC, Sao Bernardo, Brazil Univ Fed Goias, Goiania, Go, Brazil Univ Alaska Museum, Fairbanks, AK USA Egerton Univ, Egerton, Kenya Museo Hist Nat, Lima, Peru IKIAM Univ Reg Amazon, Tena, Ecuador Univ Hyogo, Sanda, Japan Inst Rech Dev, Paris, France Univ Sao Paulo, Piracicaba, Brazil Niedersachs Landesbetrieb Wasserwirtschaft Kusten, Hannover, Germany Univ Complutense Madrid, Madrid, Spain Consejo Nacl Invest Cient & Tecn, Ctr Nacl Patagon, Puerto Madryn, Argentina Roosevelt Univ, Coll Profess Studies, Chicago, IL 60605 USA Western Kentucky Univ, Bowling Green, KY 42101 USA Univ Naples Federico II, Naples, Italy Univ Fed Acre, Rio Branco, Acre, Brazil Univ Fed Santa Catarina, Florianopolis, SC, Brazil Inst Bio & Geociencias Noroeste Argentino, Salta, Argentina Inst Venezolano Invest Cient, Caracas, Venezuela Umweltbundesamt, Vienna, Austria Penclen, Plumelec, France CNRS MNHN UPMC, Ctr Rech Paleobiodivers & Paleoenvironm, Paris, France Staatl Museum Nat Kunde, Stuttgart, Germany Consejo Nacl Invest Cient & Tecn, Museo Argentino Ciencias Nat Bernardino Rivada, Buenos Aires, DF, Argentina Ctr Biol Gest Populat INRA, Montferrier Sur Lez, France Loyola Univ Chicago, Chicago, IL USA Pontificia Univ Catolica Rio do Sul, Porto Alegre, RS, Brazil Durban Museum Nat Sci, Durban, South Africa Univ Estado Amazonas, Manaus, Amazonas, Brazil Brigham Young Univ, Provo, UT 84602 USA Museo Hist Nat La Salle, Caracas, Venezuela Univ Vet Med Hannover, Hannover, Germany Australian Museum, Sydney, NSW, Australia Texas Tech Univ, Lubbock, TX 79409 USA Francis Marion Univ, Florence, SC USA Univ Washington, Seattle, WA 98195 USA Univ Connecticut, Groton, CT USA Fed Univ ABC, Santo Andre, SP, Brazil Univ Fed Uberlandia, Uberlandia, MG, Brazil Fed Univ Para, Belem, Para, Brazil Yale Peabody Museum, New Haven, CT USA Univ Texas Arlington, Arlington, TX 76019 USA Senckenberg Deutsch Entomol Inst, Muncheberg, Germany CSIRO, Natl Res Collect, Canberra, ACT, Australia Univ Venda, Thohoyandou, South Africa Univ Ulsan, Ulsan, South Korea Univ Estadual Sao Paulo, Botucatu, SP, Brazil Senckenberg Forsch Inst & Nat Museum, Frankfurt, Germany Ocean Univ China, Inst Marine Biodivers & Evolut, Qingdao, Shandong, Peoples R China Univ Fed Para, Altamira, Brazil Univ Estadual Paulista, Assis, Brazil UPMC, Ctr Rech Paleobiodiversite & Paleoenvironm, CNRS, MNHN, Paris, France Tech Univ Kaiserslautern, Kaiserslautern, Germany Charles Univ Prague, Dept Zool, Prague, Czech Republic Univ Nacl Expt los Llanos Occident Ezequiel Zamor, Guanare, Venezuela Long Isl Univ, Brooklyn, NY USA Univ Ryukyus, Okinawa, Japan Pontificia Univ Catolica Ecuador, Museo Zool, Escuela Ciencias Biol, Quito, Ecuador Indiana Univ Penn, Indiana, PA USA IRD, Dakar, Senegal State Museum Nat Hist Karlsruhe, Karlsruhe, Germany Univ Toulouse III Paul Sabatier, Toulouse, France Univ Ghent, Ghent, Belgium Univ Antwerp, Antwerp, Belgium Karlsruhe Inst Technol, Karlsruhe, Germany Ctr Cellular & Mol Biol, Hyderabad, India Univ Fed ABC, Santo Andre, Brazil Yale Peabody Museum Nat Hist, New Haven, CT USA Univ Innsbruck, Mondsee, Austria Bethune Cookman Univ, Daytona Beach, FL USA Natl Museum Nat & Sci, Tokyo, Japan Zool Garten Koln, Cologne, Germany Univ Estadual Paulista, Botucatu, SP, Brazil Univ Estadual Paulista, Sao Vicente, Brazil Univ Estadual Paulista, Rio Claro, Brazil Univ Estadual Paulista, Sao Jose Do Rio Preto, Brazil Univ Estadual Paulista, Assis, Brazil

Published
2016
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49. Phylogenomic workflow for uncultivable microbial eukaryotes using single-cell RNA sequencing - A case study with planktonic ciliates (Ciliophora, Oligotrichea).

Author

Shazib SUA, Ahsan R, Leleu M, McManus GB, Katz LA, and Santoferrara LF

Abstract

Phylogenetic analyses increasingly rely on genomic and transcriptomic data to produce better supported inferences on the evolutionary relationships among microbial eukaryotes. Such phylogenomic analyses, however, require robust workflows, bioinformatic expertise and computational power. Microbial eukaryotes pose additional challenges given the complexity of their genomes and the presence of non-target sequences (e.g., symbionts, prey) in data obtained from single cells of uncultivable lineages. To address these challenges, we developed a phylogenomic workflow based on single-cell RNA sequencing, integrating all essential steps from cell isolation to data curation and species tree inference. We assessed our workflow by using publicly available and newly generated transcriptomes (11 and 28, respectively) from the Oligotrichea, a diverse group of marine planktonic ciliates. This group's phylogenetic relationships have been relatively well-studied based on ribosomal RNA gene markers, which we reconstructed by read mapping of transcriptome sequences and compared to our phylogenomic inferences. We also compared phylogenomic analyses based on single-copy protein-coding genes (well-curated orthologs) and multi-copy genes (including paralogs) by sequence concatenation and a coalescence approach (Asteroid), respectively. Finally, using subsets of up to 1,014 gene families (GFs), we assessed the influence of missing data in our phylogenomic inferences. All our analyses yielded similar results, and most inferred relationships were consistent and well-supported. Overall, we found that Asteroid provides robust support for species tree inferences, while simplifying curation steps, minimizing the effects of missing data and maximizing the number of GFs represented in the analyses. Our workflow can be adapted for phylogenomic analyses based on single-cell RNA sequencing of other uncultivable microbial eukaryotes., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)

Published
2024
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50. The Mixoplankton Database (MDB): Diversity of photo-phago-trophic plankton in form, function, and distribution across the global ocean.

Author

Mitra A, Caron DA, Faure E, Flynn KJ, Leles SG, Hansen PJ, McManus GB, Not F, do Rosario Gomes H, Santoferrara LF, Stoecker DK, and Tillmann U

Subjects
Animals, Eukaryota physiology, Phytoplankton, Zooplankton physiology, Food Chain, Oceans and Seas, Plankton physiology, Ecosystem
Abstract

Protist plankton are major members of open-water marine food webs. Traditionally divided between phototrophic phytoplankton and phagotrophic zooplankton, recent research shows many actually combine phototrophy and phagotrophy in the one cell; these protists are the "mixoplankton." Under the mixoplankton paradigm, "phytoplankton" are incapable of phagotrophy (diatoms being exemplars), while "zooplankton" are incapable of phototrophy. This revision restructures marine food webs, from regional to global levels. Here, we present the first comprehensive database of marine mixoplankton, bringing together extant knowledge of the identity, allometry, physiology, and trophic interactivity of these organisms. This mixoplankton database (MDB) will aid researchers that confront difficulties in characterizing life traits of protist plankton, and it will benefit modelers needing to better appreciate ecology of these organisms with their complex functional and allometric predator-prey interactions. The MDB also identifies knowledge gaps, including the need to better understand, for different mixoplankton functional types, sources of nutrition (use of nitrate, prey types, and nutritional states), and to obtain vital rates (e.g. growth, photosynthesis, ingestion, factors affecting photo' vs. phago' -trophy). It is now possible to revisit and re-classify protistan "phytoplankton" and "zooplankton" in extant databases of plankton life forms so as to clarify their roles in marine ecosystems., (© 2023 The Authors. Journal of Eukaryotic Microbiology published by Wiley Periodicals LLC on behalf of International Society of Protistologists.)

Published
2023
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