917 results on '"Santiago García-Granda"'
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2. Interactions Energy, Energy Frameworks, Hirshfeld Surface and Topological Analyses of a Mononuclear Co(II) Coordination Framework
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Amani Direm, Brahim El Bali, Koray Sayin, Mohammed S. M. Abdelbaky, and Santiago García-Granda
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Co(II) complex ,crystal structure ,hydrogen bonds ,non-covalent interactions ,interaction energies ,energy frameworks ,Chemistry ,QD1-999 - Abstract
Heterocyclic ligands and their metallic complexes are biologically active materials [...]
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- 2022
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3. Development of Ferromagnetic Materials Containing Co2P, Fe2P Phases from Organometallic Dendrimers Precursors
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Alaa S. Abd-El-Aziz, Maysun R. Benaaisha, Mohammed S. M. Abdelbaky, David Martinez-Blanco, Santiago García-Granda, Amani A. Abdelghani, Laila H. Abdel-Rahman, and Rabin Bissessur
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cobalt-containing organoiron dendrimer ,transition metal phosphides ,ferromagnetic materials ,Organic chemistry ,QD241-441 - Abstract
The development of synthesis methods to access advanced materials, such as magnetic materials that combine multimetallic phosphide phases, remains a worthy research challenge. The most widely used strategies for the synthesis of magnetic transition metal phosphides (TMPs) are organometallic approaches. In this study, Fe-containing homometallic dendrimers and Fe/Co-containing heterometallic dendrimers were used to synthesize magnetic materials containing multimetallic phosphide phases. The crystalline nature of the nearly aggregated particles was indicated for both designed magnetic samples. In contrast to heterometallic samples, homometallic samples showed dendritic effects on their magnetic properties. Specifically, saturation magnetization (Ms) and coercivity (Hc) decrease as dendritic generation increases. Incorporating cobalt into the homometallic dendrimers to prepare the heterometallic dendrimers markedly increases the magnetic properties of the magnetic materials from 60 to 75 emu/g. Ferromagnetism in homometallic and heterometallic particles shows different responses to temperature changes. For example, heterometallic samples were less sensitive to temperature changes due to the presence of Co2P in contrast to the homometallic ones, which show an abrupt change in their slopes at a temperature close to 209 K, which appears to be related to the Fe2P ratios. This study presents dendrimers as a new type of precursor for the assembly of magnetic materials containing a mixture of iron- and cobalt-phosphides phases with tunable magnetism, and provides an opportunity to understand magnetism in such materials.
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- 2021
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4. Structural characterization and colour of Ni3VxP2−xO8 (0 ≤ x ≤ 2) and Ni2VyP2−yO7 (0 ≤ y ≤ 2) materials
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M.A. Tena, Rafael Mendoza, José R. García, and Santiago García-Granda
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Physics ,QC1-999 - Abstract
Structural characterization of Ni3VxP2−xO8 (0 ≤ x ≤ 2) and Ni2VyP2−yO7 (0 ≤ y ≤ 2) compositions was made and colour parameters of these materials measured. Ni(II) diphosphate and divanadate crystalline phases are not stables at high temperature. Solid solutions in Ni3P2O8 and Ni3V2O8 are obtained by incorporation of V(V) in Ni orthophosphate and P(V) in Ni orthovanadate structures. Solid solutions with Ni3V2O8 structure are formed in a greater compositional interval than solid solutions with Ni3P2O8 structure. These materials might be used as ceramic pigments because of its thermal and chemical stability. Tan brown colorations were obtained in glazed tiles when the fired compositions were 4% weight enamelled with a commercial glaze. Keywords: Phosphates, Vanadates, Nickel, Structure, Solid solutions, Colour
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- 2017
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5. Brønsted acidic ionic liquid catalyzed synthesis of poly-substituted hydroquinolines through diastereoselective, one-pot and pseudo-eight-component reaction
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Sajjad Salahi, Malek Taher Maghsoodlou, Nourallah Hazeri, Mojtaba Lashkari, Niloufar Akbarzadeh Torbati, Mohammad Amin Kazemian, Santiago García-Granda, and Laura Torre-Fernández
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Pseudo-eight-components reaction ,Meldrum’s acid ,Brønsted acidic ionic liquid ,Poly-substituted hydroquinolines ,Aldehydes ,Chemistry ,QD1-999 - Abstract
We have developed an efficient diastereoselective synthesis of poly-substituted hydroquinolines from commercially available starting materials, Meldrum’s acid, aromatic aldehydes and arylamines, in a simple and one-pot reaction using Brønsted acidic ionic liquid (4-sulfobutyl)-tris(4-sulfophenyl) phosphonium hydrogen sulfate. These three materials react together through pseudo-eight-components reaction to generate complex products with four stereocenters that involves ten new bond formations. This synthetic method can be a combination of Knoevenagel and Michael reactions.
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- 2016
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6. Crystal structure and computational study of 3,4-dihydroxy-3-hydroxymethyl-9-methyl-6-methylidene-3a,4,5,6,6a,9,9a,9b-octahydroazuleno[4,5-b]furan-2,8(3H,7H)-dione
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Ísmail Çelik, Mehmet Akkurt, Hüseyin Akşit, Ramazan Erenler, and Santiago García-Granda
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crystal structure ,cynarinin A ,Centaurea polypodiifolia ,theoretical investigation ,CNDO ,PM3 ,HOMO ,LUMO ,Crystallography ,QD901-999 - Abstract
In the molecule of title compound, C15H20O6, also known as cynarinin A, the cyclopentane ring having twist conformation and a γ-lactone ring assuming an envelope conformation are trans- and cis-fused, respectively, to a cycloheptane ring adopting a twist-chair conformation. In the crystal, O—H...O hydrogen bonds link neighbouring molecules, forming a three-dimensional network. Theoretical calculations of the molecular structure using the CNDO approximation and MOPAC PM3 geometry optimization are in satisfactory agreement with the results of the X-ray structure analysis.
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- 2015
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7. Impact of Co2+ Substitution on Microstructure and Magnetic Properties of CoxZn1-xFe2O4 Nanoparticles
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W. S. Mohamed, Meshal Alzaid, Mohammed S. M. Abdelbaky, Zakariae Amghouz, Santiago García-Granda, and Ahmed M. Abu-Dief
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coxzn1-xfe2o4 nanoparticles ,hydrothermal method ,magnetic parameters ,electron microscopies ,ferromagnetic ordering ,Chemistry ,QD1-999 - Abstract
In the present work, we synthesized CoxZn1-xFe2O4 spinel ferrite nanoparticles (x= 0, 0.1, 0.2, 0.3 and 0.4) via the precipitation and hydrothermal-joint method. Structural parameters were cross-verified using X-ray powder diffraction (XRPD) and electron microscopy-based techniques. The magnetic parameters were determined by means of vibrating sample magnetometry. The as-synthesized CoxZn1-xFe2O4 nanoparticles exhibit high phase purity with a single-phase cubic spinel-type structure of Zn-ferrite. The microstructural parameters of the samples were estimated by XRD line profile analysis using the Williamson−Hall approach. The calculated grain sizes from XRPD analysis for the synthesized samples ranged from 8.3 to 11.4 nm. The electron microscopy analysis revealed that the constituents of all powder samples are spherical nanoparticles with proportions highly dependent on the Co doping ratio. The CoxZn1-xFe2O4 spinel ferrite system exhibits paramagnetic, superparamagnetic and weak ferromagnetic behavior at room temperature depending on the Co2+ doping ratio, while ferromagnetic ordering with a clear hysteresis loop is observed at low temperatures (5K). We concluded that replacing Zn2+ ions with Co2+ ions changes both the structural and magnetic properties of ZnFe2O4 nanoparticles.
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- 2019
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8. Redetermination of the crystal structure of β-zinc molybdate from single-crystal X-ray diffraction data
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Olfa Mtioui-Sghaier, Rafael Mendoza-Meroño, Lilia Ktari, Mohamed Dammak, and Santiago García-Granda
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crystal structure ,redetermination ,β-ZnMoO4 ,hydrothermal synthesis ,wolframite structure type ,Crystallography ,QD901-999 - Abstract
The crystal structure of the β-polymorph of ZnMoO4 was re-determined on the basis of single-crystal X-ray diffraction data. In comparison with previous powder X-ray diffraction studies [Katikaneani & Arunachalam (2005). Eur. J. Inorg. Chem. pp. 3080–3087; Cavalcante et al. (2013). Polyhedron, 54, 13–25], all atoms were refined with anisotropic displacement parameters, leading to a higher precision with respect to bond lengths and angles. β-ZnMoO4 adopts the wolframite structure type and is composed of distorted ZnO6 and MoO6 octahedra, both with point group symmetry 2. The distortion of the octahedra is reflected by variation of bond lengths and angles from 2.002 (3)–2.274 (4) Å, 80.63 (11)–108.8 (2)° for equatorial and 158.4 (2)– 162.81 (14)° for axial angles (ZnO6), and of 1.769 (3)–2.171 (3) Å, 73.39 (16)–104.7 (2), 150.8 (2)–164.89 (15)° (MoO6), respectively. In the crystal structure, the same type of MO6 octahedra share edges to built up zigzag chains extending parallel to [001]. The two types of chains are condensed by common vertices into a framework structure. The crystal structure can alternatively be described as derived from a distorted hexagonally closed packed arrangement of the O atoms, with Zn and Mo in half of the octahedral voids.
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- 2015
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9. An easy and general method to quantify Azithromycin dihydrate in a matrix of amorphous Azithromycin
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Jose Montejo-Bernardo, Santiago García-Granda, Miguel Bayod-Jasanada, Isidro Llorente, and Luján Llavona
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Organic chemistry ,QD241-441 - Published
- 2005
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10. 2,5-Dibromoindan-1-ol
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Ísmail Çelik, Mehmet Akkurt, Makbule Yilmaz, Ahmet Tutar, Ramazan Erenler, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the title compound, C9H8Br2O, the cyclopentene ring adopts an envelope conformation with the brominated C atom as the flap. In the crystal, molecules are linked by strong O—H...O hydrogen bonds into zigzag C(4) chains along [010]. In addition, a C—H...π interaction involving the benzene ring and the H atom attached to the hydroxylated C atom is observed.
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- 2012
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11. (E)-1-[1-(4-Chlorophenyl)ethylidene]thiosemicarbazide
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Rafael Mendoza-Meroño and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the crystal structure of the title compound, C9H10ClN3S, the molecules form chains parallel to [001] through N—H...S hydrogen bonds. In addition, weak intermolecular N—H...Cl hydrogen bonds connect the chains, forming a two-dimensional network parallel to (001).
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- 2012
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12. 4-(Diphenylamino)benzaldehyde 4-phenylthiosemicarbazone
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Rafael Mendoza-Meroño, Laura Menéndez-Taboada, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The title molecule, C26H22N4S, is composed of three main parts, viz. a triphenylamine group is connected to a phenyl ring by a thiosemicarbazone moiety. The C= N double bond has an E conformation. The crystal packing is dominated by strong hydrogen bonds through the thiosemicarbazone moiety, with pairs of N—H...S hydrogen bonds linking the molecules to form inversion dimers with an R22(8) ring motif. An intramolecular N—H...N hydrogen bond is also present, generating an S(5) ring motif. Although the structure contains four phenyl rings, π–π stacking interactions are not formed between them, probably due to the conformation adopted by the triphenylamine group. However, a weak π–π stacking interaction is observed between the phenyl ring and the delocalized thiosemicarbazone moiety.
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- 2012
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13. 3-(Adamantan-1-yl)-4-ethyl-1-[(4-phenylpiperazin-1-yl)methyl]-1H-1,2,4-triazole-5(4H)-thione
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Ali A. El-Emam, Ebtehal S. Al-Abdullah, Hanaa M. Al-Tuwaijri, Mohammed Said-Abdelbaky, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The title compound, C25H35N5S, has an approximately C-shaped conformation. The dihedral angle between the triazole and phenyl planes is 79.5 (2)°. The crystal structure consists of infinite chains parallel to the b axis, constructed by C—H...S hydrogen bonds between translation-related molecules. Adjacent chains are linked via weak C—H...C interactions between the adamantyl and phenyl groups.
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- 2012
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14. 5-(Adamantan-1-yl)-3-[(4-benzylpiperazin-1-yl)methyl]-1,3,4-oxadiazole-2(3H)-thione
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Ali A. El-Emam, Nasser R. El-Brollosy, Mohamed I. Attia, Mohammed Said-Abdelbaky, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The molecule of the title compound, C24H32N4OS, is a functionalized 1,3,4-oxadiazole-2-thione with substituted piperazine and adamantanyl substituents attached at the 3- and 5-positions, respectively, of the oxadiazole spacer with an approximately C-shaped conformation. In the crystal, molecules form dimers via C—H...S interaction. The piperazine ring has a chair conformation; the substituents S, methylene C and adamantane C of the essentially planar oxadiazole ring are approximately in the same plane, with distances of −0.046 (2), −0.085 (5) and 0.003 (4) Å, respectively. The dihedral angle between the planes of the phenyl and oxadiazole rings is 31.3 (3)°.
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- 2012
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15. N′-(Adamantan-2-ylidene)benzohydrazide
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Maha S. Almutairi, Ali A. El-Emam, Nasser R. El-Brollosy, Mohammed Said-Abdelbaky, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The title molecule, C17H20N2O, is a functionalized hydrazine with benzoyl and adamantyl substituents attached to the two hydrazine N atoms. In the crystal, molecules are linked via N—H...N hydrogen bonds, forming chains propagating along the a-axis direction. There are also C—H...O, C—H...N and C—H...π interactions present within the chains.
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- 2012
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16. 1-(4-Carboxybutan-2-ylidene)-4-phenylthiosemicarbazide
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Rafael Mendoza-Meroño, Laura Menéndez-Taboada, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The molecule of the title compound, C12H15N3O2S, which belongs to the family of thiosemicarbazones, containing an acid group, adopts a semi-closed conformation with an intramolecular N—H...N hydrogen bond. In the crystal, molecules are linked by strong N—H...O and O—H...S hydrogen bonds between the acid group and thiosemicarbazone unit, with one additional intermolecular hydrogen C—H...O interaction. These three interactions form R22(8) and a R21(7) rings and the molecules related by the c-glide plane are linked into a zigzag chain along [001].
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- 2012
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17. (1E,2E)-2-Methyl-3-phenylacrylaldehyde thiosemicarbazone
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Rafael Mendoza-Meroño and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the crystal structure of the title compound, C11H13N3S, molecules form centrosymmetric synthons with an R22(8) graph-set motif, linked by pairs of N—H...S hydrogen bonds. The synthons are connected through further N—H...S hydrogen bonds, extending the packing to form a two-dimensional network lying parallel to (001). In addition, C—H...π interactions are observed.
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- 2012
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18. Bis(2,2′-bipyridyl-κ2N,N′)dichloridorhodium(III) perchlorate
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Alla Dikhtiarenko, Laura Torre-Fernández, Santiago García-Granda, José R. García, and José Gimeno
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Crystallography ,QD901-999 - Abstract
The asymmetric unit of the title compound, [RhCl2(C10H8N2)2]ClO4, consists of one unit of the cationic complex [RhCl2(bipy)2]+ and one uncoordinated perchlorate anion. The RhIII atom is coordinated by four N atoms from two bipyridyl ligands and two Cl atoms, forming a distorted octahedral environment. The Cl ligands are cis. Two intramolecular C—H...Cl hydrogen bonds occur in the cationic complex . In the crystal, molecules are linked together by a hydrogen-bond network involving the H atoms of bipyridyl rings and perchlorate anions. An O atom of the perchlorate anion is disordered over two sites, with an occupancy-factor ratio of 0.78 (3):0.22 (3).
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- 2012
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19. 5-Amino-4-bromo-2,3-dihydro-1H-inden-1-one
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Ramazan Erenler, Ahmet Tutar, Ísmail Çelik, Makbule Yılmaz, Mehmet Akkurt, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the title compound, C9H8BrNO, the non-H-atom framework is essentially planar, with a maximum deviation of 0.087 (3) Å. In the crystal, molecules are interconnected into a three-dimensional network by C—H...O and N—H...O hydrogen bonds. In addition, C—H...π interactions and a π–π stacking interaction, with a centroid–centroid distance of 3.5535 (19) Å, are also observed.
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- 2012
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20. 2,3-Dihydro-1H-cyclopenta[b]naphthalen-1-ol
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Ramazan Erenler, Ísmail Çelik, Ahmet Tutar, Mehmet Akkurt, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the title compound, C13H12O, the cyclopentene ring fused with the naphthalene group adopts an envelope conformation. The cyclopentene torsion angle, with the fusion bond at the centre, has a magnitude of 1.16 (16)°. In the crystal, neighbouring molecules are connected through O—H...O hydrogen bonds into an R44(8) ring motif. The crystal packing also features weak π–π stacking interactions [centroid–centroid distance = 3.8981 (8) Å] and C—H...π interactions.
- Published
- 2012
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21. N,N′-Dibenzyl-N′′-(2,4-difluorobenzoyl)-N,N′-dimethylphosphoric triamide
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Mehrdad Pourayoubi, Samad Shoghpour, Laura Torre-Fernández, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the title molecule, C23H24F2N3O2P, the P atom is in a distorted tetrahedral P(=O)(N)(N)2 environment, with the bond angles around the P atom in the range 106.78 (11)–114.10 (13)°. The phosphoryl and carbonyl groups, which are separated by an N atom, adopt an anti orientation relative to each other. In the C(=O)NHP(=O) fragment, the P—N bond is longer [1.683 (2) Å] and the O—P—N angle is smaller [106.78 (11)°] than the other P—N bonds [1.613 (2) and 1.632 (2) Å] and O—P—N bond angles [114.10 (13) and 110.83 (12)°], respectively. The N atoms have sp2 character. In the crystal, pairs of P=O...H—N hydrogen bonds form inversion dimers with R22(8) ring motifs.
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- 2012
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22. N,N′-Dibenzyl-N,N′-dimethyl-N′′-(2-phenylacetyl)phosphoric triamide
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Mehrdad Pourayoubi, Samad Shoghpour, Laura Torre-Fernández, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The P atom in the title molecule, C24H28N3O2P, is in a distorted tetrahedral P(=O)(N)(N)2 environment. The phosphoryl group and the NH unit adopt a syn orientation with respect to each other and the N atoms have sp2 character. The P—N bonds in the P(O)[N(CH3)(CH2C6H5)]2 unit are shorter than the P—N bond in the C(=O)NHP(=O) fragment. An intramolecular C—H...O hydrogen bond occurs. In the crystal, pairs of P=O...H—N hydrogen bonds form centrosymmetric dimers. C—H...O contacts are also observed. Four C atoms of two benzene rings are disordered over two alternative sites with an occupancy ratio of 0.523 (12):0.427 (12).
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- 2011
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23. N-Benzoyl-N′,N′′-dicyclohexylphosphoric triamide
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Mehrdad Pourayoubi, Mahnaz Rostami Chaijan, Laura Torre-Fernández, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the title compound, C19H30N3O2P, the central P atom has a distorted tetrahedral configuration. The N atoms in both cyclohexylamide moieties exhibit a slight deviation [0.32 (7) and 0.44 (6) Å] from planarity, while the benzoylamide N atom is planar [0.11 (3) Å]. In the crystal, molecules are linked via N—H...O(P) and N—H...O(C) hydrogen bonds, forming R22(10) rings within linear arrangements parallel to the b axis.
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- 2011
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24. Pyridine-4-carbaldehyde 4-phenylsemicarbazone
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Rafael Mendoza-Meroño, Laura Menéndez-Taboada, Eva Fernández-Zapico, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the title compound, C13H12N4O, the semicarbazone fragment links a benzene and a pyridine ring in the structure. The crystal packing is stabilized by strong intermolecular N—H...O hydrogen bonds, which connect two molecules to form a synthon unit, and by N—H...N hydrogen bonds and weak C—H...π interactions. The molecular conformation is stabilized by intramolecular N—H...N and C—H...O interactions.
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- 2011
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25. N,N′-Dibenzyl-N,N′-dimethyl-N′′-(4-nitrobenzoyl)phosphoric triamide
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Mehrdad Pourayoubi, Mahnaz Rostami Chaijan, Laura Torre-Fernández, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The P atom in the title compound, C23H25N4O4P, is in a slightly distorted tetrahedral coordination environment and the N atoms show sp2 character. The phosphoryl group and the NH unit are syn with respect to each other. In the crystal, pairs of intermolecular N—H...O(P) hydrogen bonds form centrosymmetric dimers.
- Published
- 2011
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26. 3,6,8-Tribromoquinoline
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Ísmail Çelik, Mehmet Akkurt, Salih Ökten, Osman Çakmak, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The title molecule, C9H4Br3N, is almost planar, the maximum deviation being 0.110 (1) Å. The crystal structure is stabilized by weak aromatic π–π interactions [centroid–centroid distance = 3.802 (4) Å] between the pyridine and benzene rings of the quinoline ring systems of adjacent molecules.
- Published
- 2010
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27. 6,8-Dibromoquinoline
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Ísmail Çelik, Mehmet Akkurt, Osman Çakmak, Salih Ökten, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The title molecule, C9H5Br2N, is almost planar, with an r.m.s. deviation of 0.027 Å. The dihedral angle between the aromatic rings is 1.5 (3)°. In the crystal, π–π stacking interactions are present between the pyridine and benzene rings of adjacent molecules [centroid–centroid distances = 3.634 (4) Å], and short Br...Br contacts [3.4443 (13) Å] occur.
- Published
- 2010
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28. 5-Hydroxy-7-phenyl-5-(prop-2-yn-1-yl)-5,6-dihydro-1-benzofuran-2(4H)-one monohydrate
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Laura Torre-Fernández, Marcos G. Suero, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the title compound, C17H14O3·H2O, the six-membered ring, which adopts a half-chair conformation, makes a dihedral angle of 24.3 (2)° with the phenyl ring. In the crystal, the components are linked by O—H...O hydrogen bonds involving the water molecule, and the hydroxy and carbonyl groups of the organic compound. These interactions form a square-like supramolecular synthon unit which propagates as chains parallel to the crystallographic b axis. A C—H...O interaction also occurs.
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- 2010
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29. 1,2-Diphenyl-2-(m-tolylamino)ethanoneDedicated to the memory of Professor José Manuel Concellón.
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Rafael Mendoza Meroño, Felix Nápoles Esculary, Laura Menéndez Taboada, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The title compound, C21H19NO, belongs to the family of α-aminoketones. The structure contains three benzene rings, two of which [the phenyl ring in the 1-position (B) and the methylaniline ring (A)] are nearly coplanar [dihedral angle = 5.4 (1)°], whereas the phenyl ring in the 2-position (C) is nearly normal to them [dihedral angles = 81.8 (1) and 87.0 (1)° for A/C and B/C, respectively]. The conformation of the N—H bond is syn to the C=O bond, favouring the formation of a centrosymmetric dimer of molecules in the crystal structure. The molecular packing is consolidated by this N—H...O hydrogen-bonding network.
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- 2010
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30. 1-(Biphenyl-4-ylmethylidene)thiosemicarbazide monohydrate
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Rafael Mendoza-Meroño, Laura Menéndez-Taboada, Eva Fernández-Zapico, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
In the title compound, C14H13N3S·H2O, the thiosemicarbazide group is nearly planar, with a maximum deviation of 0.072 (2) Å from the ideal least-squares plane, and shows an E conformation. In the crystal packing, the water molecules are involved in an extensive intermolecular N—H...O hydrogen-bond network, assisted by O—H...S interactions, which link the independent molecules into chains extended along b axis. An intramolecular hydrogen N—H...N bond helps to stabilize the molecular conformation.
- Published
- 2010
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31. 4-(Methylamino)benzoic acid
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Ísmail Çelik, Mehmet Akkurt, Hacali Necefoğlu, Özgür Aybirdi, and Santiago García-Granda
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Crystallography ,QD901-999 - Abstract
The asymmetric unit of the title compound, C8H9NO2, contains three crystallographically independent molecules, which are essentially planar, the carboxyl O atoms deviating by 0.091 (3), 0.101 (2) and 0.164 (3) Å from the mean plane through the non-H atoms. In the crystal, all three molecules form O—H...O hydrogen-bonded about inversion centers, forming eight-membered rings with graph-set notation R22(8). In addition, N—H...O hydrogen bonding and C—H...π interactions reinforce the packing.
- Published
- 2009
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32. 1,4-Bis(methylsulfanyl)naphthalene
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Ísmail Çelik, Mehmet Akkurt, Ayşegül Şenocak, Osman Çakmak, Laura Torre-Fernández, and Santiago García-Granda
- Subjects
Crystallography ,QD901-999 - Abstract
The molecule of the title compound, C12H12S2, is close to planar, with the methyl C atoms deviating by 0.019 (1) and 0.221 (2) Å from the naphthalene mean plane. In the crystal structure, the shortest S...S contact of 3.6864 (9) Å is longer than the van der Waals contact distance.
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- 2009
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33. (1RS,2RS,3RS)-1,2-Dimethoxy-3-methyl-2-phenyl-1-(2-thienyl)cyclopropane
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Laura Torre-Fernández, Marcos G. Suero, and Santiago García-Granda
- Subjects
Crystallography ,QD901-999 - Abstract
In the title compound, C16H18O2S, a new cis-1,2-dimethoxycyclopropane, the two methoxy groups are in a cis configuration and in trans positions with respect to the H atom and the phenyl and thienyl rings on the cyclopropyl group. The molecular packing is dominated by weak intermolecular C—H...O interactions, allowing the formation of zigzag chains propagating parallel to the c axis. The dihedral angle between the aromatic rings is 86.12 (8)°.
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- 2009
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34. Green and blue materials for the ceramic industry from pink MgCoxNi1-xSiO4 (0 ≤ x ≤ 1) solid solutions
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M.A. Tena, Rafael Mendoza, Camino Trobajo, José R. García, and Santiago García-Granda
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Process Chemistry and Technology ,Materials Chemistry ,Ceramics and Composites ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Published
- 2023
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35. Synthesis, crystal structure, vibrational properties, optical properties and Hirshfeld surface analysis of a new Bi (III) halide complex: (C2H8N)3BiBr6 for optoelectronic devices
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Kaouther Kahouli, A. Ben Jazia Kharrat, Mohammed S. M. Abdelbaky, Santiago García-Granda, K. Khirouni, and Slaheddine Chaabouni
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General Physics and Astronomy - Published
- 2022
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36. Crystal structure studies of 4-ethylpiperazin-1-ium 3,5-dinitrobenzoate, 4-methylpiperazin-1-ium 3,5-dinitrobenzoate and 4-methylpiperazin-1-ium 4-iodobenzoate
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Hemmige S. Yathirajan, Sriramapura D. Archana, Mohammed S. M. Abdelbaky, Sabine Foro, Santiago García-Granda, Haruvegowda Kiran Kumar, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Principado de Asturias, University of Mysore, and Technische Universität Darmstadt
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crystal structure ,Crystallography ,Halogen bond ,Chemistry ,Hydrogen bond ,Biological activity ,Piperazinium salts ,biological activity ,General Chemistry ,Crystal structure ,piperazinium salts ,Condensed Matter Physics ,Medicinal chemistry ,Research Communications ,benzoate anion ,QD901-999 ,Biological property ,Crystal structures ,Nitro ,General Materials Science ,Benzoate anion - Abstract
As part of our ongoing investigation on the chemical and biological properties of piperazinium salts, we synthesized three novel compounds: 1-ethylpiperazinium 3,5-dinitrobenzoate (I), 1-methylpiperazinium 3,5-dinitrobenzoate (II) and 1-methylpiperazinium 4-iodobenzoate (III). The crystal structures of these compounds are built up of organic layers formed by the strong connection between the molecules by hydrogen bonds of type N—H...O. These layers are linked through N—H...O hydrogen bonds and C—H...O interactions or C—I...N halogen bonding, leading to the formation of a three-dimensional network., Funding for this research was provided by: Spanish Ministerio de Ciencia e Innovacion (grant No. PID2020-113558RB-C41 to Santiago Garcia-Granda); Gobierno del Principado de Asturias (grant No. GRUPIN-ID2018-170 to Santiago GarciaGranda); University of Mysore (grant to Sriramapura D. Archana); Darmstadt University of Technology (studentship to Hemmige S. Yathirajan).
- Published
- 2021
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37. Synthesis, Thermal Expansion Behavior and Sintering of Sodium Zirconium Nickel and Calcium Zirconium Nickel Phosphates
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Maksim Boldin, A. A. Popov, A. I. Orlova, S. A. Khainakov, Santiago García-Granda, A. A. Murashov, A. V. Nokhrin, D. O. Savinykh, A. A. Aleksandrov, and V. N. Chuvil’deev
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010302 applied physics ,Zirconium ,Materials science ,General Chemical Engineering ,Metals and Alloys ,Infrared spectroscopy ,Sintering ,chemistry.chemical_element ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Thermal expansion ,Inorganic Chemistry ,Nickel ,chemistry ,visual_art ,0103 physical sciences ,Materials Chemistry ,visual_art.visual_art_medium ,Relative density ,Ceramic ,0210 nano-technology ,Solid solution ,Nuclear chemistry - Abstract
New NZP-type solid solutions, Na1+2xZr2–xNix(PO4)3 and Ca0.5+xZr2–xNix(PO4)3 with x = 0.10, 0.25, and 0.50, have been prepared by solid-state reactions. The synthesized samples have been characterized by X-ray diffraction and IR spectroscopy. Crystal structure of the compound CaZr1.5Ni0.5(PO4)3 has been refined by full-profile X-ray diffraction analysis method, reliability factors is Rp = 4.78% and Rwp = 6.45%, respectively. Thermal expansion of the phosphates has been studied by high-temperature X-ray diffraction in the temperature range 25–700°C. The synthesized compounds have been shown to be intermediate- and low-thermal-expansion materials. Using SPS method we have produced ceramic samples with a high relative density (ρrel > 97%), based on phosphate powders. Strength characteristics (microhardness and fracture toughness) of the ceramics have been determined.
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- 2021
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38. Sol−Gel Processing of Water‐Soluble Carbon Nitride Enables High‐Performance Photoanodes**
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Boris Mizaikoff, Andrey Turchanin, Dariusz Mitoraj, Lucía dos Santos-Gómez, Santiago García-Granda, Christiane Adler, Christine Kranz, Radim Beranek, Julian Kund, Christof Neumann, Igor Krivtsov, German Research Foundation, Ministerio de Economía y Competitividad (España), Principado de Asturias, Agencia Estatal de Investigación (España), Alexander von Humboldt Foundation, and Projekt DEAL
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DDC 540 / Chemistry & allied sciences ,Fabrication ,Materials science ,Heptazine ,Carbon nitride ,General Chemical Engineering ,Photoelectrochemistry ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,chemistry.chemical_compound ,Environmental Chemistry ,General Materials Science ,carbon nitride ,Thin film ,Unverzerrte Schätzung ,Sol-gel ,chemistry.chemical_classification ,photoreforming ,Thin layers ,Full Paper ,photoanode ,Polymer ,Full Papers ,bias-free operation ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,General Energy ,chemistry ,photoelectrocatalysis ,ddc:540 ,0210 nano-technology - Abstract
In spite of the enormous promise that polymeric carbon nitride (PCN) materials hold for various applications, the fabrication of high-quality, binder-free PCN films and electrodes has been a largely elusive goal to date. Here, we tackle this challenge by devising, for the first time, a water-based sol−gel approach that enables facile preparation of thin films based on poly(heptazine imide) (PHI), a polymer belonging to the PCN family. The sol−gel process capitalizes on the use of a water-soluble PHI precursor that allows formation of a non-covalent hydrogel. The hydrogel can be deposited on conductive substrates, resulting in formation of mechanically stable polymeric thin layers. The resulting photoanodes exhibit unprecedented photoelectrochemical (PEC) performance in alcohol reforming and highly selective (∼100 %) conversions with very high photocurrents (>0.25 mA cm−2 under 2 sun) down to, This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)–Projektnummer 364549901–TRR 234 [Projects B6, B7, C2, C4 and Z2] and BE 5102/5-1. C.N and A.T. acknowledge financial support of the DFG through the project TU 149/8-2 “Towards photo-active membranes for artificial photosynthesis” as well as the DFG through a research infrastructure grant INST 275/257-1 FUGG. S.G.G. acknowledges support by Spanish MINECO (MAT2016-78155-C2-1-R) and Gobierno del Principado de Asturias (GRUPIN-ID2018-170). L.d.S.G. acknowledges Juan de la Cierva Formación scholarship. I.K. acknowledges the support of the Alexander von Humboldt Foundation through the Humboldt Research Fellowship. Open access funding enabled and organized by Projekt DEAL.
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- 2021
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39. Thermal behavior and physicochemical studies of phase transitions before the decomposition in the selenate–tellurate protonic conductor material
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Santiago García-Granda, H. Litaiem, Imen Gouti, and Ministère de l’Enseignement Supérieur et de la Recherche Scientifique (Tunisie)
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Conductivity ,Phase transition ,Materials science ,Crystal structure ,Atmospheric temperature range ,Condensed Matter Physics ,Thermal conduction ,Tellurate ,Selenate ,chemistry.chemical_compound ,Crystallography ,chemistry ,IR ,Differential Scanning Calorimetry (DSC) ,Physical and Theoretical Chemistry ,Thermal analysis ,Raman ,Monoclinic crystal system - Abstract
Thermal analysis confirmed the presence of the phase transition at T = 320 K in the Cs2SeO4·H6TeO6 (CsSeTe) material. The structural study carried out at T = 360 K shows that this compound passes from the monoclinic system with the space group P21/c at room temperature, to the trigonal system with the space group R3¯m. At room temperature, the anionic groups are well ordered and stable, whereas after the transition at T = 320 K, the selenate groups change their orientation and the tellurate polyhedra change their positions. The high-temperature vibrational studies, carried out in a temperature range of 289–353 K, confirm the presence and nature of the transition detected by thermal analysis. The conductivity evolution versus temperature shows the presence of an ionic–protonic conduction phase transition at T = 490 K., This work is supported by the Ministry of the Higher Education and Research of Tunisia.
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- 2020
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40. Synthesis, Characterization, Crystal Structure, and Thermal Behavior of New Triazolium Salt Along with Docking Studies
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Mohammed S. M. Abdelbaky, Santiago García-Granda, Seyed Ghorban Hosseini, Keyvan Moeini, Ministerio de Economía y Competitividad (España), and European Commission
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Chemistry ,Hydrogen bond ,Stacking ,Crystal structure ,010402 general chemistry ,010403 inorganic & nuclear chemistry ,01 natural sciences ,Tautomer ,0104 chemical sciences ,Inorganic Chemistry ,Crystallography ,Materials Chemistry ,Molecule ,Chemical stability ,Thermal stability ,Physical and Theoretical Chemistry ,Single crystal - Abstract
A new triazolic compound 4,5-diamino-3-methyl-4H-1,2,4-triazol-1-ium nitrate (DAMT·HNO3) is synthesized and characterized by elemental analysis, FTIR, 1H NMR spectroscopy, and single crystal X-ray diffraction along with thermal analyses (TGA/DSC). The X-ray analysis of the compound reveals triazolium nitrate salt with a new tautomeric form. Among different N-H…X bonds (X = C, N, O), the N-H…O ones form R 22(4), R 42(8), R 44(18), R 24(14), and R 21(4) hydrogen bond motifs. The crystal network of DAMT·HNO3 is also stabilized by π-π stacking interactions between triazole rings. Thermal studies reveal that this compound has a good thermal stability and can release a considerable amount of heat at the first decomposition step. Further, the thermal properties of this compound are compared with its chloride salt analogue DAMT·HCl. The thermodynamic stability of DAMT·HNO3 is studied by DFT calculations and compared with those of DAMT·HCl and DAMT. The ability of these compounds to interact with a DNA molecule is investigated by docking studies., We acknowledge the financial support from Spanish Ministerio de Economía y Competitividad (MAT2016-78155-C2-1-R and FPI grant BES-2011-046948 to MSM.A.) and FEDER funding.
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- 2020
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41. Structural study, spectroscopic characterization, thermal behavior, DFT calculations and antimicrobial properties of a new hybrid compound, (C7H9N2)2[HgCl4]·H2O
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Hadda-Imene Ouzari, Mariem Ben Jomaa, Hammouda Chebbi, Nedra Korbi, Mohammed S. M. Abdelbaky, Noura Fakher Bourguiba, Santiago García-Granda, Ministère de l’Enseignement Supérieur et de la Recherche Scientifique (Tunisie), Ministerio de Economía y Competitividad (España), and Principado de Asturias
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Chemistry ,Powder xrd ,Hybrid compound ,010402 general chemistry ,010403 inorganic & nuclear chemistry ,Antimicrobial ,01 natural sciences ,Evaporation (deposition) ,0104 chemical sciences ,Characterization (materials science) ,symbols.namesake ,Thermal ,Materials Chemistry ,symbols ,Physical chemistry ,Physical and Theoretical Chemistry ,Thermal analysis ,Raman spectroscopy - Abstract
A new bis(benzamidinium)tetrachloridomercurate(II) monohydrate, (C7H9N2)2[HgCl4]·H2O, was synthesized by slow evaporation at room temperature and characterized by powder XRD, IR, Raman, UV-vis spectroscopy and thermal analysis. Single-crystal X-ray diffraction analysis indicates that the asymmetric unit of the title compound is formed by tetrachloridomercurate [HgCl4]2− anion, a protonated organic cation (C7H9N2)2+ and one free water crystallization molecule. The cohesion of the structure is insured by N–H···Cl, O–H···Cl and N–H ···O hydrogen bonds and π-π stacking interactions. The density functional theory (DFT)-optimized structure at the B3LYP/6-311++G(2d,2p) level is compared with the experimentally determined molecular structure. Comprehensive experimental and theoretical structural studies on the compound are carried out through IR and UV-vis spectroscopies. The compound was characterized by thermal analysis to determine its thermal behavior with respect to the temperature. The in vitro antibacterial activity of the compound against different bacterial strains was evaluated. The three-dimensional Hirshfeld surface (3 D-HS) and the two-dimensional fingerprint plots (2 D-FP) reveal that the structure is dominated by H···Cl/Cl···H (51.0%) and H···H (32.3%) contacts., Financial support from the Ministry of Higher Education, Scientific Research and Technology of Tunisia, Spanish Ministerio de Economía y Competitividad (MAT2016-78155-C2-1-R) and Gobierno del Principado de Asturias (GRUPIN-IDI/2018/170) is gratefully acknowledged.
- Published
- 2020
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42. Structural characterization, thermal analysis, electric and dielectric properties of a novel organic-inorganic hybrid compound based on iron fluoride
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Mohamed Dammak, Afef Moulahi, Oussama Guesmi, Mohammed S. M. Abdelbaky, Santiago García-Granda, Ministère de l’Enseignement Supérieur et de la Recherche Scientifique (Tunisie), Ministerio de Ciencia, Innovación y Universidades (España), and Agencia Estatal de Investigación (España)
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Hydrogen bond ,Jonscher's law ,Materials science ,Mechanical Engineering ,Metals and Alloys ,Iron fluoride ,Dielectric ,Complex impedance ,Hybrid compound ,Characterization (materials science) ,Organic–inorganic hybrid ,Chemical engineering ,Mechanics of Materials ,Organic inorganic ,Materials Chemistry ,Thermal analysis ,Phase transition - Abstract
A novel organic–inorganic hybrid compound based on iron fluoride, formulated as (H2Piper)4 [(FeF6)2FeF5(H2O)(H2O)4] (Piper = Piperazine), C1, has been synthesized through hydrothermal method and characterized by X-ray single-crystal diffraction, thermogravimetric analysis (TGA), differential scanning calorimetric (DSC) and dielectric measurements. Single-crystal X-ray study demonstrated that C1 crystallizes in P̅1 space group with lattice parameters: a = 12.5535(5) Å, b = 12.8715(4) Å, c = 22.2774(8) Å, α = 92.321(3)°, β = 95.957 (3)°, γ = 91.946(3)°, V = 3574.6 Å3 and Z = 4. In the molecular arrangement, [FeF6]3- and [FeF5(H2O)]2- anions are connected to [H2Piper]2+ cations and free water molecules through hydrogen bonds (O–H⋅⋅⋅F and N–H⋅⋅⋅F) generating 3D network. Thermal analysis (DSC and TG) of C1 confirmed the presence of two phase transitions as well as the temperature of the decomposition of the hybrid material. The complex impedance of C1 was investigated in the temperature range 410–530 K and in the frequency range 200–2.106 Hz. Additionally, an electrical equivalent circuit was reported to explain the impedance results. The variation of the dc and ac conductivity corroborated two phase transitions of the title compound. Furthermore, the frequency dependence of alternative current (ac) conductivity was interpreted in terms of Jonscher's law. The alternative current (ac) electrical conduction in C1 material was accounted for in terms of two processes that can be assigned to the hopping transport mechanism (CBH and NSPT model). The temperature dependences of dielectric permittivity indicated a relaxation process and highlighted the good protonic conduction of this material., The Minister of Superior Education and Research of Tunisia and Spanish Ministerio de Ciencia e Innovación (PID2020-113558RB-C41) and Red CrysFact (Red2018-102574-T (AEI/MCI)) are acknowledged.
- Published
- 2022
43. Structural features and in silico prediction of the biological properties of a pyrazole-based coordination complex
- Author
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Amani Direm, Brahim El Bali, Koray Sayın, Mohammed Abdelbaky, and Santiago García-Granda
- Published
- 2021
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44. Structural Characterization, Spectroscopic Profile, Molecular Docking, ADMET Properties, Molecular Dynamics Simulation Studies, and Molecular Mechanics Generalized Born Surface Area Analysis of 5‑(Adamantan-1-yl)-4-butyl-2,4-dihydro‑3H‑1,2,4-triazole-3-thione as a Potential COX Inhibitor
- Author
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Lamya H. Al-Wahaibi, Ali A. El-Emam, Mohammed S. M. Abdelbaky, Santiago Garcia-Granda, Anushree Maurya, Mamta Pal, Zohra Siddiqui, Raj Shukla, Shilendra K. Pathak, Ruchi Srivastava, Vikas K. Shukla, Onkar Prasad, and Leena Sinha
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Chemistry ,QD1-999 - Published
- 2024
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45. Structural Insights and Docking Analysis of Adamantane-Linked 1,2,4-Triazole Derivatives as Potential 11β-HSD1 Inhibitors
- Author
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Luke S Zondagh, Santiago García-Granda, Doaa Ahmed Osman, Nora H. Al-Shaalan, Jacques Joubert, Lamya H. Al-Wahaibi, Mario A. Macías, Ali A. El-Emam, Abdul Rahman University, and Deanship of Scientific Research, King Abdulaziz University
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11β-HSD1 inhibitors ,Stereochemistry ,Adamantane ,adamantane ,Pharmaceutical Science ,Organic chemistry ,Crystal structure ,Crystallography, X-Ray ,Article ,Analytical Chemistry ,chemistry.chemical_compound ,1,2,4-triazole ,QD241-441 ,single crystal X-ray ,11-beta-Hydroxysteroid Dehydrogenase Type 1 ,Drug Discovery ,Humans ,Molecule ,Hirshfeld surface analysis ,Enzyme Inhibitors ,Physical and Theoretical Chemistry ,Molecular Structure ,biology ,Chemistry ,Aryl ,1,2,4-Triazole ,Active site ,molecular docking ,Triazoles ,Ligand (biochemistry) ,Molecular Docking Simulation ,Single crystal X-ray ,Chemistry (miscellaneous) ,Docking (molecular) ,ADME ,Molecular docking ,biology.protein ,Molecular Medicine - Abstract
This article belongs to the Special Issue Molecular Simulations Applications in Biochemistry and Molecular Biology., The solid-state structural analysis and docking studies of three adamantane-linked 1,2,4-triazole derivatives are presented. Crystal structure analyses revealed that compound 2 crystallizes in the triclinic P-1 space group, while compounds 1 and 3 crystallize in the same monoclinic P21/c space group. Since the only difference between them is the para substitution on the aryl group, the electronic nature of these NO2 and halogen groups seems to have no influence over the formation of the solid. However, a probable correlation with the size of the groups is not discarded due to the similar intermolecular disposition between the NO2/Cl substituted molecules. Despite the similarities, CE-B3LYP energy model calculations show that pairwise interaction energies vary between them, and therefore the total packing energy is affected. HOMO-LUMO calculated energies show that the NO2 group influences the reactivity properties characterizing the molecule as soft and with the best disposition to accept electrons. Further, in silico studies predicted that the compounds might be able to inhibit the 11β-HSD1 enzyme, which is implicated in obesity and diabetes. Self- and cross-docking experiments revealed that a number of non-native 11β-HSD1 inhibitors were able to accurately dock within the 11β-HSD1 X-ray structure 4C7J. The molecular docking of the adamantane-linked 1,2,4-triazoles have similar predicted binding affinity scores compared to the 4C7J native ligand 4YQ. However, they were unable to form interactions with key active site residues. Based on these docking results, a series of potentially improved compounds were designed using computer aided drug design tools. The docking results of the new compounds showed similar predicted 11β-HSD1 binding affinity scores as well as interactions to a known potent 11β-HSD1 inhibitor., This research was funded by the Deanship of Scientific Research at Princess Nourah bint Abdulrahman University through the Research Groups Program (Grant No. RGP-1442-0010-4).
- Published
- 2021
46. Synthesis, crystal structure, physico-chemical characterization and theoretical study of a new Pb(II) complex [C10H22N2]3·PbCl5·3Cl·3H2O
- Author
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C. Ben Nasr, Mohammed S. M. Abdelbaky, M.L. Mrad, I. Feddaoui, Khaled Essalah, Santiago García-Granda, Ministerio de Economía y Competitividad (España), European Commission, Principado de Asturias, and Ministère de l’Enseignement Supérieur et de la Recherche Scientifique (Tunisie)
- Subjects
Photoluminescence ,010405 organic chemistry ,Chemistry ,Hydrogen bond ,Hirshfeld surface ,Organic Chemistry ,Intermolecular force ,Infrared spectroscopy ,Crystal structure ,DFT calculations ,010402 general chemistry ,01 natural sciences ,X-ray diffraction ,0104 chemical sciences ,Analytical Chemistry ,Inorganic Chemistry ,SEM ,Physical chemistry ,Thermal analysis ,Hybrid material ,Spectroscopy ,Photoluminescence study - Abstract
A novel hybrid material, [C10H22N2]3·PbCl5·3Cl·3H2O, has been synthesized and its structure was determined by single-crystal X-ray diffraction. In the atomic arrangement, the different entities are held together through NH⋯Cl, OH⋯Cl and OH⋯O hydrogen bonds to form a three-dimensional network. Intermolecular interactions were investigated by Hirshfeld surfaces. The powder XRD data confirms the phase purity of the crystalline sample. The resulting IR spectrum calculated by the DFT/B3LYP/LanL2DZ method, is similar to the experimental spectrum allowing a good correlation between the experimental and theoretical wavenumbers. The optical properties in the UV–visible region have been explored by the UV–visible absorption. The photoluminescence (PL) spectroscopy, which was investigated at room temperature, exhibited one emission at 426 nm. Thermal analysis discloses a phase transition at 435 K and the decomposition of the sample starts from 554 K., Financial support from Spanish MINECO (MAT2016-78155-C2-1-R, MAT2013-40950-R, and FPI grant BES-2011-046948 to MSM.A.), Gobierno del Principado de Asturias (GRUPIN14-060), FEDER, and the Secretary of State for Scientific Research and Technology of Tunisia, are acknowledged.
- Published
- 2019
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47. Water and oxoanion encapsulation chemistry in a 1H-pyrazole azacryptand
- Author
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Kari Rissanen, Enrique García-España, Salvador Blasco, Alberto Lopera, Santiago García-Granda, M. Paz Clares, Javier Pitarch-Jarque, Ministerio de Economía y Competitividad (España), Generalitat Valenciana, Ministerio de Ciencia, Innovación y Universidades (España), and Agencia Estatal de Investigación (España)
- Subjects
Aqueous solution ,Chemistry ,Hydrogen bond ,Cryptand ,Protonation ,02 engineering and technology ,General Chemistry ,Pyrazole ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Perchlorate ,chemistry.chemical_compound ,Polymer chemistry ,Materials Chemistry ,Amine gas treating ,0210 nano-technology ,Anion binding - Abstract
Anion complexes of the cryptand built with the tripodal amine tris(2-aminoethyl)amine, known as tren, with water and several oxoanions of biological and environmental interest (nitrate, sulfate, phosphate, perchlorate and arsenate) have been crystallized from aqueous solution and resolved with single-crystal X-ray diffraction. All crystals show guest species encapsulated in the interior of the cavity as well as, in some cases, sitting in the grooves defined by the arms of the macrocycle. Hydrogen bonding and electrostatic interactions play a major role in anion binding to the host. The macrocycle is able to encapsulate anions in a wide range of protonation degrees. Solution studies have been carried out to show that those interactions happen also in solution in addition to the solid state. The results show that the receptor binds consistently to the ligand in a wide range protonation degrees., Financial support by the Spanish Ministerio de Economía y Competitividad (projects CTQ2016-78499-C6-1-R, Unidad de Excelencia MDM 2015-0038 and CTQ2017-90852-REDC) and Generalitat Valenciana (Project PROMETEOII2015-002) is gratefully acknowledged. S. B. thanks MINECO for a Juan de la Cierva postdoctoral grant.
- Published
- 2019
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48. Supramolecular self-assembly built by weak hydrogen, chalcogen and unorthodox non-bonded motifs in 4-(4-chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a selective COX-2 inhibitor: insights from X-ray and theoretical study
- Author
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Santiago García-Granda, Bavanandan Rahul, Mohammed S. M. Abdelbaky, Ahmed A. B. Mohamed, Ali A. El-Emam, Subbiah Thamotharan, Lamya H. Al-Wahaibi, M. Judith Percino, Deanship of Scientific Research, King Abdulaziz University, and Abdul Rahman University
- Subjects
chemistry.chemical_classification ,short C–H···F–Csp2 hydrogen bonb ,Hydrogen bond ,Ligand ,General Chemical Engineering ,Intermolecular force ,Supramolecular chemistry ,General Chemistry ,Crystal structure ,Article ,Chemistry ,chemistry.chemical_compound ,Chalcogen ,Crystallography ,C–S···Cl chalcogen bond ,chemistry ,QTAIM ,Sulfanyl ,Non-covalent interactions ,QD1-999 ,1,2,4-Trazole - Abstract
A selective triazole-based COX-2 inhibitor, 4-(4-chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, C19H13ClFN3S2, has been synthesized, and its crystal structure was determined at 150 K. Single-crystal X-ray diffraction analysis revealed that the thiophene ring was disordered over two orientations. The crystal structure is stabilized by weak hydrogen and chalcogen bonds and unorthodox F···π and S···C(π) contacts. These noncovalent interactions cooperatively generate the supramolecular self-assembly in the crystalline state. The Hirshfeld surface and its associated two-dimensional (2D)-fingerprint plots were obtained to analyze the role of different noncovalent interactions in the crystal packing. Further, the enrichment ratio was obtained from different atom···atom pairs to calculate the propensity of these pairs to form noncovalent interactions. The strength of different dimeric motifs formed in the crystal structure and lattice energies was calculated by the PIXEL method. Furthermore, the topological analysis of the charge density of intermolecular interactions was described. A CSD survey of C–H···F hydrogen bond, C–S···Cl chalcogen bond, and unorthodox nonbonded contacts (F···π and S···C(π)) is presented. The title compound possesses selective inhibitory activity against human COX-2 enzyme rather than COX-1. The quantum mechanics (QM) polarized ligand docking analysis was used to predict the binding pose and study the title compound’s selectivity against COX-1/2 enzymes., This research was funded by the Deanship of Scientific Research at Princess Nourah bint Abdulrahman University through the Research Groups Program (grant no. RGP-1442-0010-4). S.T. and M.J.P. thank Laboratorio Nacional de Supercomputo del Sureste (LNS-BUAP) for computational resources.
- Published
- 2021
49. Experimental And In Silico Studies Of Dichloro-Tetrakis (1H-Pyrazole)-Cobalt(Ii): Structural Description, Photoluminescent Behavior And Molecular Docking
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Brahim El Bali, Koray Sayin, Mohammed S. M. Abdelbaky, Santiago García-Granda, Amani Direm, Ministry of Higher Education and Scientific Research (Algeria), Principado de Asturias, and Cumhuriyet University Research Foundation
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Inorganic Chemistry ,chemistry.chemical_compound ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Library science ,Christian ministry ,Pyrazole ,010402 general chemistry ,01 natural sciences ,Spectroscopy ,0104 chemical sciences ,Analytical Chemistry - Abstract
A novel pyrazole-based Co(II) complex, namely dichloro-tetrakis(1H-pyrazole)-cobalt(II), was synthesized and characterized. Its X-ray crystal structure showed that it crystallizes in the monoclinic C2/c space group with discrete [CoPz4Cl2] units held together via intra- and intermolecular hydrogen bonds. The non-covalent interactions were explicitly analyzed by means of the topological and Hirshfeld surface analyses, revealing the presence of 0-periodic binodal 1,6-connected 1,6M7–1 and 14-connected uninodal bcu–x topologies built up through N—H…Cl and C—H…Cl hydrogen-bonding networks in addition to weak non-classical H…H, Nsingle bondH…C, Csingle bondH…N, N—H…π, π…lp/lp…π and lp…lp interactions. Additionally, interactions energy and energy frameworks analyses were performed in order to compute the total energies of the possible intermolecular interactions. The empty space in the crystal lattice was analyzed using void mapping which lead to the presence of small cavities. The structure was furthermore optimized showing a very good agreement with the experimental results, the molecular electrostatic potential (MEP) maps were obtained with their active regions and the non-linear optical properties estimated. Additionally, the optical properties of the title complex were investigated at room temperature using optical UV-visible absorption and photoluminescence spectroscopy, exhibiting π → π*, n → π*, d → d and ligand-field transitions which result in a large variety of emission bands predominant by a bright red photoluminescence. An in silico study was carried out and the binding ability of the title complex with Staphylococcus aureus tyrosyl-tRNA synthetase and Pyrococcus kodakaraensis aspartyl-tRNA synthetase was evaluated displaying a good inhibition activity towards the last one., Funding was provided by the General Direction of research and development technologies/Ministry of Higher Education and Research Sciences DGRSDT/MESRS, Algeria. The financial support from Abbes Laghrour University of Khenchela (Algeria), TUBITAK ULAKBIM, High Performance and Grid Computing Center (TR-Grid e-Infrastructure), Spanish MINECO (MAT2016–78155-C2–1-R), Gobierno del Principado de Asturias (GRUPIN-IDI/2018/000170) are acknowledged. This work is supported by the Scientific Research Project Fund of Sivas Cumhuriyet University under the project number RGD-020.
- Published
- 2021
50. Ceramic pigments from CoxNi3-xP2O8 (0 ≤ x ≤ 3) solid solutions
- Author
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Santiago García-Granda, Rafael Mendoza, José R. García, M. A. Tena, Camino Trobajo, Ministerio de Economía y Competitividad (España), Agencia Estatal de Investigación (España), and Ministerio de Ciencia, Innovación y Universidades (España)
- Subjects
Materials science ,Ni3P2O8 ,Process Chemistry and Technology ,Analytical chemistry ,Spectral line ,Ni3P2O8Co3P2O8 ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Ion ,Absorbance ,Pigment ,Octahedron ,solid solutions ,Atomic electron transition ,visual_art ,Materials Chemistry ,Ceramics and Composites ,visual_art.visual_art_medium ,Co3P2O8 ,ceramic pigments ,Ceramic ,Ceramic pigments ,Solid solutions ,Solid solution - Abstract
CoxNi3-xP2O8 (0 ≤ x ≤ 3) solid solutions were synthesized via the chemical co-precipitation method. Variation of unit cell parameters and interatomic distances indicated that these solid solutions with the Ni3P2O8 structure are stable between 800 and 1200 °C in compositions with 0 ≤ x ≤ 1.5 and between 800 and 1000 °C when (0 ≤ x ≤ 3). When (2.5 ≤ x ≤ 3.0), the solid solutions lead to the Co3P2O8 structure, being stable between 800 and 1000 °C. The yellow colour of the Ni3P2O8 compound changes to pink or red when Co(II) ions are incorporated in the structure as Ni3P2O8 solid solutions are formed. Bands corresponding to second and third electronic transitions of the Co(II) ions in octahedral coordination appear in the 450–600 nm in the UV-V spectra, and they are responsible of the observed changes in the colour. Absorbance in the visible spectra was also obtained from enamelled samples but a new band at 650 nm with considerable absorbance when x > 1.0 increased the blue amount, and colour of the enamelled samples was yellowish brown, brown, green and blue., We gratefully acknowledge the financial support provided by Spain's Ministerio de Ciencia, Innovación y Universidades, project MAT2016-78155-C2-1-R.
- Published
- 2021
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