176 results on '"Sangtae, Ahn"'
Search Results
2. Optimizing Prompts Using In-Context Few-Shot Learning for Text-to-Image Generative Models
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Seunghun Lee, Jihoon Lee, Chan Ho Bae, Myung-Seok Choi, Ryong Lee, and Sangtae Ahn
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In-context few-shot learning ,pretrained language model ,prompt optimization ,text-to-image generation ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Recently, various text-to-image generative models have been released, demonstrating their ability to generate high-quality synthesized images from text prompts. Despite these advancements, determining the appropriate text prompts to obtain desired images remains challenging. The quality of the synthesized images heavily depends on the user input, making it difficult to achieve consistent and satisfactory results. This limitation has sparked the need for an effective prompt optimization method to generate optimized text prompts automatically for text-to-image generative models. Thus, this study proposes a prompt optimization method that uses in-context few-shot learning in a pretrained language model. The proposed approach aims to generate optimized text prompts to guide the image synthesis process by leveraging the available contextual information in a few text examples. The results revealed that synthesized images using the proposed prompt optimization method achieved a higher performance, at 18% on average, based on an evaluation metric that measures the similarity between the generated images and prompts for generation. The significance of this research lies in its potential to provide a more efficient and automated approach to obtaining high-quality synthesized images. The findings indicate that prompt optimization may offer a promising pathway for text-to-image generative models.
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- 2024
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3. Inflammation and tissue remodeling contribute to fibrogenesis in stricturing Crohn’s disease: image processing and analysis study
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Mustafa Erdem Arslan, Rupinder Brar, Lianna Goetz, Dipti Karamchandani, Michael W. Mikula, Kyle Hodge, Hua Li, Sangtae Ahn, and Hwajeong Lee
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crohn’s disease ,stricture ,fibrosis ,telocyte ,calretinin ,calprotectin ,Pathology ,RB1-214 - Abstract
Background Inflammation and structural remodeling may contribute to fibrogenesis in Crohn’s disease (CD). We quantified the immunoexpression of calretinin, CD34, and calprotectin as a surrogate for mucosal innervation, telocytes (interstitial cells playing a role in networking), and inflammation, respectively, and correlated them with bowel alterations in stricturing CD. Methods Primary resection specimens for ileal CD (n = 44, 31 stricturing CD, 13 inflammatory CD) were identified. Left-sided ulcerative colitis and trauma cases were used as controls. Proximal and distal margin and middle (diseased) sections were stained for calretinin, CD34, and calprotectin. Microscopic images were captured from the mucosa (calretinin), submucosa (calprotectin), and myenteric plexus (CD34), and the immunostaining was quantified using image processing and analysis. Bowel thickness at the corresponding sections were measured and correlated with the amount of immunoexpression. Results A total of 2,037 images were analyzed. In stricturing CD, submucosal alteration/thickening at the stricture site correlated with calprotectin staining and inversely correlated with calretinin staining at the proximal margin. Muscularis propria alteration/thickening at the stricture site correlated with mucosal calretinin staining at the proximal margin. Submucosal alteration/thickening at the proximal margin correlated with calretinin and CD34 staining at the proximal margin and inversely correlated with CD34 staining at the stricture site. Calretinin immunostaining at the distal margin was significantly higher in stricturing CD than the controls. Conclusions Inflammation and tissue remodeling appear to contribute to fibrogenesis in stricturing CD. Increased mucosal calretinin immunostaining distal to the diseased segment could be helpful in diagnosing CD in the right clinical context.
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- 2022
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4. Improving the Performance of Object Detection by Preserving Balanced Class Distribution
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Heewon Lee and Sangtae Ahn
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computer vision ,object detection ,imbalanced class distribution ,multi-label stratification ,Mathematics ,QA1-939 - Abstract
Object detection is a task that performs position identification and label classification of objects in images or videos. The information obtained through this process plays an essential role in various tasks in the field of computer vision. In object detection, the data utilized for training and validation typically originate from public datasets that are well-balanced in terms of the number of objects ascribed to each class in an image. However, in real-world scenarios, handling datasets with much greater class imbalance, i.e., very different numbers of objects for each class, is much more common, and this imbalance may reduce the performance of object detection when predicting unseen test images. In our study, thus, we propose a method that evenly distributes the classes in an image for training and validation, solving the class imbalance problem in object detection. Our proposed method aims to maintain a uniform class distribution through multi-label stratification. We tested our proposed method not only on public datasets that typically exhibit balanced class distribution but also on private datasets that may have imbalanced class distribution. We found that our proposed method was more effective on datasets containing severe imbalance and less data. Our findings indicate that the proposed method can be effectively used on datasets with substantially imbalanced class distribution.
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- 2023
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5. Experimental Study of Morphological Analyzers for Topic Categorization in News Articles
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Sangtae Ahn
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natural language processing ,morphological analyzer ,topic categorization ,news article ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Natural language processing refers to the ability of computers to understand text and spoken words similar to humans. Recently, various machine learning techniques have been used to encode a large amount of text and decode feature vectors of text successfully. However, understanding low-resource languages is in the early stages of research. In particular, Korean, which is an agglutinative language, needs sophisticated preprocessing steps, such as morphological analysis. Since morphological analysis in preprocessing significantly influences classification results, ideal and optimized morphological analyzers must be used. This study explored five state-of-the-art morphological analyzers for Korean news articles and categorized their topics into seven classes using term frequency–inverse document frequency and light gradient boosting machine frameworks. It was found that a morphological analyzer based on unsupervised learning achieved a computation time of 6 s in 500,899 tokens, which is 72 times faster than the slowest analyzer (432 s). In addition, a morphological analyzer using dynamic programming achieved a topic categorization accuracy of 82.5%, which is 9.4% higher than achieve when using the hidden Markov model (73.1%) and 13.4% higher compared to the baseline (69.1%) without any morphological analyzer in news articles. This study can provide insight into how each morphological analyzer extracts morphemes in sentences and affects categorizing topics in news articles.
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- 2023
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6. Adaptive Gradient Balancing for Undersampled MRI Reconstruction and Image-to-Image Translation.
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Itzik Malkiel, Sangtae Ahn, Valentina Taviani, Anne Menini, Lior Wolf, and Christopher J. Hardy
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- 2021
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7. Transcranial alternating current stimulation entrains alpha oscillations by preferential phase synchronization of fast-spiking cortical neurons to stimulation waveform
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Wei A. Huang, Iain M. Stitt, Ehsan Negahbani, D. J. Passey, Sangtae Ahn, Marshall Davey, Moritz Dannhauer, Thien T. Doan, Anna C. Hoover, Angel V. Peterchev, Susanne Radtke-Schuller, and Flavio Fröhlich
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Science - Abstract
Transcranial alternating current stimulation (tACS) can modulate cortical oscillations and associated long-lasting cognitive and behavioral functions in humans. Here, the authors provide in vivo evidence in ferrets on the mechanism of how weak electric fields in tACS can entrain neuronal activity.
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- 2021
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8. Pinging the brain with transcranial magnetic stimulation reveals cortical reactivity in time and space
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Sangtae Ahn and Flavio Fröhlich
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Cortical reactivity ,Source localization ,Motor cortex excitability ,Transcranial magnetic stimulation ,Electroencephalography ,Transcranial direct current stimulation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Background: Single-pulse transcranial magnetic stimulation (TMS) elicits an evoked electroencephalography (EEG) potential (TMS-evoked potential, TEP), which is interpreted as direct evidence of cortical reactivity to TMS. Thus, combining TMS with EEG can be used to investigate the mechanism underlying brain network engagement in TMS treatment paradigms. However, controversy remains regarding whether TEP is a genuine marker of TMS-induced cortical reactivity or if it is confounded by responses to peripheral somatosensory and auditory inputs. Resolving this controversy is of great significance for the field and will validate TMS as a tool to probe networks of interest in cognitive and clinical neuroscience. Objective: Here, we delineated the cortical origin of TEP by spatially and temporally localizing successive TEP components, and modulating them with transcranial direct current stimulation (tDCS) to investigate cortical reactivity elicited by single-pulse TMS and its causal relationship with cortical excitability. Methods: We recruited 18 healthy participants in a double-blind, cross-over, sham-controlled design. We collected motor-evoked potentials (MEPs) and TEPs elicited by suprathreshold single-pulse TMS targeting the left primary motor cortex (M1). To causally test cortical and corticospinal excitability, we applied tDCS to the left M1. Results: We found that the earliest TEP component (P25) was localized to the left M1. The following TEP components (N45 and P60) were largely localized to the primary somatosensory cortex, which may reflect afferent input by hand-muscle twitches. The later TEP components (N100, P180, and N280) were largely localized to the auditory cortex. As hypothesized, tDCS selectively modulated cortical and corticospinal excitability by modulating the pre-stimulus mu-rhythm oscillatory power. Conclusion: Together, our findings provide causal evidence that the early TEP components reflect cortical reactivity to TMS.
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- 2021
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9. Corrigendum: Multi-Modal Integration of EEG-fNIRS for Brain-Computer Interfaces – Current Limitations and Future Directions
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Sangtae Ahn and Sung C. Jun
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multi-modal integration ,electroencephalography (EEG) ,functional near-infrared spectroscopy (fNIRS) ,brain-computer interface (BCI) ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2021
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10. Comparative Study of Multiclass Text Classification in Research Proposals Using Pretrained Language Models
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Eunchan Lee, Changhyeon Lee, and Sangtae Ahn
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natural language understanding ,multiclass text classification ,bidirectional encoder representations from transformers ,transfer learning ,multilingual representation learning ,cross-lingual representation learning ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Recently, transformer-based pretrained language models have demonstrated stellar performance in natural language understanding (NLU) tasks. For example, bidirectional encoder representations from transformers (BERT) have achieved outstanding performance through masked self-supervised pretraining and transformer-based modeling. However, the original BERT may only be effective for English-based NLU tasks, whereas its effectiveness for other languages such as Korean is limited. Thus, the applicability of BERT-based language models pretrained in languages other than English to NLU tasks based on those languages must be investigated. In this study, we comparatively evaluated seven BERT-based pretrained language models and their expected applicability to Korean NLU tasks. We used the climate technology dataset, which is a Korean-based large text classification dataset, in research proposals involving 45 classes. We found that the BERT-based model pretrained on the most recent Korean corpus performed the best in terms of Korean-based multiclass text classification. This suggests the necessity of optimal pretraining for specific NLU tasks, particularly those in languages other than English.
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- 2022
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11. An Investigation of Stochastic Variance Reduction Algorithms for Relative Difference Penalized 3D PET Image Reconstruction
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Robert Twyman, Simon Arridge, Zeljko Kereta, Bangti Jin, Ludovica Brusaferri, Sangtae Ahn, Charles W. Stearns, Brian F. Hutton, Irene A. Burger, Fotis Kotasidis, and Kris Thielemans
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Radiological and Ultrasound Technology ,Electrical and Electronic Engineering ,Software ,Computer Science Applications - Abstract
Penalised PET image reconstruction algorithms are often accelerated during early iterations with the use of subsets. However, these methods may exhibit limit cycle behaviour at later iterations due to variations between subsets. Desirable converged images can be achieved for a subclass of these algorithms via the implementation of a relaxed step size sequence, but the heuristic selection of parameters will impact the quality of the image sequence and algorithm convergence rates. In this work, we demonstrate the adaption and application of a class of stochastic variance reduction gradient algorithms for PET image reconstruction using the relative difference penalty and numerically compare convergence performance to BSREM. The two investigated algorithms are: SAGA and SVRG. These algorithms require the retention in memory of recently computed subset gradients, which are utilised in subsequent updates. We present several numerical studies based on Monte Carlo simulated data and a patient data set for fully 3D PET acquisitions. The impact of the number of subsets, different preconditioners and step size methods on the convergence of regions of interest values within the reconstructed images is explored. We observe that when using constant preconditioning, SAGA and SVRG demonstrate reduced variations in voxel values between subsequent updates and are less reliant on step size hyper-parameter selection than BSREM reconstructions. Furthermore, SAGA and SVRG can converge significantly faster to the penalised maximum likelihood solution than BSREM, particularly in low count data.
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- 2023
12. Differing dose details and controlling confounding covariates in modulating motor cortex excitability by transcranial direct current stimulation
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Flavio Frohlich and Sangtae Ahn
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Transcranial direct current stimulation ,Transcranial magnetic stimulation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2021
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13. Deep learning-based model observers that replicate human observers for PET imaging.
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Fenglei Fan, Sangtae Ahn, Bruno De Man, Kristen A. Wangerin, Scott D. Wollenweber, Craig K. Abbey, and Paul E. Kinahan
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- 2020
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14. A Fast Convergent Ordered-Subsets Algorithm With Subiteration-Dependent Preconditioners for PET Image Reconstruction
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Jianfeng Guo, C. Ross Schmidtlein, Andrzej Krol, Si Li, Yizun Lin, Sangtae Ahn, Charles Stearns, and Yuesheng Xu
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Radiological and Ultrasound Technology ,Phantoms, Imaging ,FOS: Physical sciences ,Numerical Analysis (math.NA) ,Physics - Medical Physics ,Computer Science Applications ,Optimization and Control (math.OC) ,Positron-Emission Tomography ,Image Processing, Computer-Assisted ,FOS: Mathematics ,Mathematics - Numerical Analysis ,Medical Physics (physics.med-ph) ,Electrical and Electronic Engineering ,Tomography, X-Ray Computed ,Mathematics - Optimization and Control ,Algorithms ,Software - Abstract
We investigated the imaging performance of a fast convergent ordered-subsets algorithm with subiteration-dependent preconditioners (SDPs) for positron emission tomography (PET) image reconstruction. In particular, we considered the use of SDP with the block sequential regularized expectation maximization (BSREM) approach with the relative difference prior (RDP) regularizer due to its prior clinical adaptation by vendors. Because the RDP regularization promotes smoothness in the reconstructed image, the directions of the gradients in smooth areas more accurately point toward the objective function's minimizer than those in variable areas. Motivated by this observation, two SDPs have been designed to increase iteration step-sizes in the smooth areas and reduce iteration step-sizes in the variable areas relative to a conventional expectation maximization preconditioner. The momentum technique used for convergence acceleration can be viewed as a special case of SDP. We have proved the global convergence of SDP-BSREM algorithms by assuming certain characteristics of the preconditioner. By means of numerical experiments using both simulated and clinical PET data, we have shown that the SDP-BSREM algorithms substantially improve the convergence rate, as compared to conventional BSREM and a vendor's implementation as Q.Clear. Specifically, SDP-BSREM algorithms converge 35\%-50\% faster in reaching the same objective function value than conventional BSREM and commercial Q.Clear algorithms. Moreover, we showed in phantoms with hot, cold and background regions that the SDP-BSREM algorithms approached the values of a highly converged reference image faster than conventional BSREM and commercial Q.Clear algorithms., Comment: 12 pages, 9 figures
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- 2022
15. Brain-derived neurotrophic factor (BDNF) polymorphism may influence the efficacy of tACS to modulate neural oscillations
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Justin Riddle, Trevor McPherson, Alana K. Atkins, Christopher P. Walker, Sangtae Ahn, and Flavio Frohlich
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2020
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16. Cortical Responses and Shape Complexity of Stereoscopic Image - A Simultaneous EEG/MEG Study
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Hohyun Cho, Min-Koo Kang, Sangtae Ahn, Moonyoung Kwon, Kuk-Jin Yoon, Kiwoong Kim, and Sung Chan Jun
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Stereoscopic depth ,Shape complexity ,Depth perception ,Cognitive processing ,Cortical load ,EEG ,MEG ,Neurology. Diseases of the nervous system ,RC346-429 ,Neurophysiology and neuropsychology ,QP351-495 - Abstract
Background/Aims: In exploring human factors, stereoscopic 3D images have been used to investigate the neural responses associated with excessive depth, texture complexity, and other factors. However, the cortical oscillation associated with the complexity of stereoscopic images has been studied rarely. Here, we demonstrated that the oscillatory responses to three differently shaped 3D images (circle, star, and bat) increase as the complexity of the image increases. Methods: We recorded simultaneous EEG/MEG for three different stimuli. Spatio-temporal and spatio-spectro-temporal features were investigated by non-parametric permutation test. Results: The results showed that N300 and alpha inhibition increased in the ventral area as the shape complexity of the stereoscopic image increased. Conclusion: It seems that the relative disparity in complex stereoscopic images may increase cognitive processing (N300) and cortical load (alpha inhibition) in the ventral area.
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- 2016
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17. User’s Self-Prediction of Performance in Motor Imagery Brain–Computer Interface
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Minkyu Ahn, Hohyun Cho, Sangtae Ahn, and Sung C. Jun
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BCI-illiteracy ,performance variation ,prediction ,motor imagery ,BCI ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Performance variation is a critical issue in motor imagery brain–computer interface (MI-BCI), and various neurophysiological, psychological, and anatomical correlates have been reported in the literature. Although the main aim of such studies is to predict MI-BCI performance for the prescreening of poor performers, studies which focus on the user’s sense of the motor imagery process and directly estimate MI-BCI performance through the user’s self-prediction are lacking. In this study, we first test each user’s self-prediction idea regarding motor imagery experimental datasets. Fifty-two subjects participated in a classical, two-class motor imagery experiment and were asked to evaluate their easiness with motor imagery and to predict their own MI-BCI performance. During the motor imagery experiment, an electroencephalogram (EEG) was recorded; however, no feedback on motor imagery was given to subjects. From EEG recordings, the offline classification accuracy was estimated and compared with several questionnaire scores of subjects, as well as with each subject’s self-prediction of MI-BCI performance. The subjects’ performance predictions during motor imagery task showed a high positive correlation (r = 0.64, p < 0.01). Interestingly, it was observed that the self-prediction became more accurate as the subjects conducted more motor imagery tasks in the Correlation coefficient (pre-task to 2nd run: r = 0.02 to r = 0.54, p < 0.01) and root mean square error (pre-task to 3rd run: 17.7% to 10%, p < 0.01). We demonstrated that subjects may accurately predict their MI-BCI performance even without feedback information. This implies that the human brain is an active learning system and, by self-experiencing the endogenous motor imagery process, it can sense and adopt the quality of the process. Thus, it is believed that users may be able to predict MI-BCI performance and results may contribute to a better understanding of low performance and advancing BCI.
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- 2018
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18. Quantitatively accurate image reconstruction for clinical whole-body PET imaging.
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Evren Asma, Sangtae Ahn, Hua Qian, Girishankar Gopalakrishnan, Kris Thielemans, Steven G. Ross, Ravindra M. Manjeshwar, and Alexander Ganin
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- 2012
19. Artificial Intelligence in PET
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Sangtae Ahn, Evren Asma, Arman Rahmim, Kris Thielemans, Babak Saboury, Arkadiusz Sitek, Alvin Ihsani, Adam Chandler, and Sven Prevrhal
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Radiation ,Standardization ,business.industry ,Perspective (graphical) ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Image processing ,General Medicine ,Iterative reconstruction ,Commercialization ,GeneralLiterature_MISCELLANEOUS ,ComputingMethodologies_PATTERNRECOGNITION ,Workflow ,Data acquisition ,Medical imaging ,Medicine ,Radiology, Nuclear Medicine and imaging ,Artificial intelligence ,business - Abstract
Artificial intelligence (AI) has significant potential to positively impact and advance medical imaging, including positron emission tomography (PET) imaging applications. AI has the ability to enhance and optimize all aspects of the PET imaging chain from patient scheduling, patient setup, protocoling, data acquisition, detector signal processing, reconstruction, image processing, and interpretation. AI poses industry-specific challenges which will need to be addressed and overcome to maximize the future potentials of AI in PET. This article provides an overview of these industry-specific challenges for the development, standardization, commercialization, and clinical adoption of AI and explores the potential enhancements to PET imaging brought on by AI in the near future. In particular, the combination of on-demand image reconstruction, AI, and custom-designed data-processing workflows may open new possibilities for innovation which would positively impact the industry and ultimately patients.
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- 2021
20. How Much Features in Brain-Computer Interface Are Discriminative?- Quantitative Measure by Relative Entropy.
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Sangtae Ahn, Sungwook Kang, and Sung Chan Jun
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- 2011
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21. Optimal Illumination Patterns for Fluorescence Tomography.
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Joyita Dutta, Sangtae Ahn, Anand A. Joshi, and Richard M. Leahy
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- 2009
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22. Fast Image Reconstruction Methods for Fully 3d Multispectral Optical Bioluminescence Tomography.
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Sangtae Ahn, Abhijit J. Chaudhari, Felix Darvas, Charles A. Bouman, and Richard M. Leahy
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- 2007
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23. Spatial resolution properties of nonquadratically regularized image reconstruction for PET.
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Sangtae Ahn and Richard M. Leahy
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- 2006
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24. Multi-Modal Integration of EEG-fNIRS for Brain-Computer Interfaces – Current Limitations and Future Directions
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Sangtae Ahn and Sung C. Jun
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multi-modal integration ,electroencephalography (EEG) ,functional near-infrared spectroscopy (fNIRS) ,brain-computer interface (BCI) ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Multi-modal integration, which combines multiple neurophysiological signals, is gaining more attention for its potential to supplement single modality’s drawbacks and yield reliable results by extracting complementary features. In particular, integration of electroencephalography (EEG) and functional near-infrared spectroscopy (fNIRS) is cost-effective and portable, and therefore is a fascinating approach to brain-computer interface (BCI). However, outcomes from the integration of these two modalities have yielded only modest improvement in BCI performance because of the lack of approaches to integrate the two different features. In addition, mismatch of recording locations may hinder further improvement. In this literature review, we surveyed studies of the integration of EEG/fNIRS in BCI thoroughly and discussed its current limitations. We also suggested future directions for efficient and successful multi-modal integration of EEG/fNIRS in BCI systems.
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- 2017
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25. Alpha transcranial alternating current stimulation reduces depressive symptoms in people with schizophrenia and auditory hallucinations: a double-blind, randomized pilot clinical trial
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Mengsen Zhang, Rachel B. Force, Christopher Walker, Sangtae Ahn, L. Fredrik Jarskog, and Flavio Frohlich
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People with schizophrenia exhibit reduced alpha oscillations and frontotemporal coordination of brain activity. Alpha oscillations are associated with top-down inhibition. Reduced alpha oscillations may fail to censor spurious endogenous activity, leading to auditory hallucinations. Transcranial alternating current stimulation (tACS) at the alpha frequency was shown to enhance alpha oscillations in people with schizophrenia and may thus be a network-based treatment for auditory hallucinations. We conducted a double-blind, randomized, placebo-controlled pilot clinical trial to examine the efficacy of 10-Hz tACS in treating auditory hallucinations in people with schizophrenia. 10-Hz tACS was administered in phase at the dorsolateral prefrontal cortex and the temporoparietal junction with a return current at Cz. Patients were randomized to receive tACS or sham for five consecutive days during the treatment week (40 min/day), followed by a maintenance period, during which participants received weekly tACS (40 min/visit) or sham. tACS treatment reduced general psychopathology (p p p p p p
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- 2022
26. Covariance of Kinetic Parameter Estimators Based on Time Activity Curve Reconstructions: Preliminary Study on 1D Dynamic Imaging.
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Sangtae Ahn, Jeffrey A. Fessler, Thomas E. Nichols, and Robert A. Koeppe
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- 2004
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27. Development of a Residential Gateway and a Service Server for Home Automation.
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Jongkyu Park, Ilseok Han, Jinhyuck Kwon, June Hwang, Hagbae Kim, Sangtae Ahn, and Whie Chang
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- 2002
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28. Increasing Trend of Calretinin-Positive Mucosal Innervation from Aganglionic Zone toward Transition Zone in Hirschsprung's Disease
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Christine Whyte, Saleh Najjar, Hwajeong Lee, Timothy A. Jennings, Mustafa Erdem Arslan, Sangtae Ahn, and Kavita Umrau
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Pathology ,medicine.medical_specialty ,Biopsy ,03 medical and health sciences ,0302 clinical medicine ,030225 pediatrics ,medicine ,Humans ,Hirschsprung Disease ,Hirschsprung's disease ,Mucous Membrane ,medicine.diagnostic_test ,business.industry ,Rectum ,Infant ,Suction biopsy ,Hypertrophy ,medicine.disease ,Calbindin 2 ,030220 oncology & carcinogenesis ,Pediatrics, Perinatology and Child Health ,Nerve hypertrophy ,Surgery ,Cutoff point ,Calretinin ,business ,Immunostaining - Abstract
Introduction Diagnosis of very short-segment Hirschsprung's disease (vsHD) by rectal suction biopsy is challenging as its aganglionic zone (AZ) overlaps with physiologic hypoganglionic zone and calretinin-positive mucosal nerves may extend from the transition zone (TZ) into AZ. We studied whether an increasing trend/gradient of calretinin-positive mucosal nerves along the distance from AZ toward TZ aids in diagnosis of HD. Materials and Methods In this study, 46 rectal suction biopsies from non-HD and HD, and 15 pull-through specimens from short-segment HD were evaluated by mucosal calretinin immunostain (CI) and image processing and analysis (IPA) to measure pixel count (PC, the percentage of calretinin stained pixels in the mucosa). Consecutive longitudinal sections of proximal AZ toward distal TZ in HD pull-through specimens were utilized as a vsHD surrogate model. First, we studied variability of mucosal CI in non-HD biopsies along the distance from dentate line. Second, we determined a cutoff point of mucosal CI by IPA that separated non-HD versus HD and applied this cutoff to longitudinal sections from proximal AZ to distal TZ segments in HD pull-through specimens. Third, we studied whether an increasing trend of mucosal CI was universally observed in HD pull-through. Results Our findings included a significant variability in PC along the biopsy distance in non-HD cases. Positive mucosal CI was found in proximal AZ in 6 (43%) of 14 HD pull-through, among which 1 case lacked submucosal nerve hypertrophy in the proximal AZ. All 14 HD pull-through cases showed an increasing trend/gradient of PC from AZ toward TZ. Conclusion Based on our findings, the presence or absence of mucosal CI positivity and submucosal nerve hypertrophy may not reliably diagnose vsHD in rectal suction biopsy. While we acknowledge that the density of mucosal innervation in variable contexts and anatomical locations is unknown and yet to be explored, our study suggests that an increasing trend of positive mucosal CI from AZ toward TZ by IPA might prove to be a useful tool for the diagnosis of vsHD in the future.
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- 2021
29. An Investigation of Stochastic Variance Reduction Algorithms for 3D Penalised PET Image Reconstruction
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Kris Thielemans, Fotis Kotasidis, Irene A. Burger, Brian Hutton, Charles Stearns, Sangtae Ahn, Ludovica Brusaferri, Bangti Jin, Zeljko Kereta, Simon Arridge, and Robert Twyman
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Application of stochastic variance reduction algorithms to iterative PET reconstruction. We investigated the SAGA and SVRG algorithms for non-TOF PET image reconstruction. Both similated data and a patient data sets were used in the analysis. We found that the stochastic algorithms can improve convergence rate and eliminate behaviour, commonly know as limit cycle behaviour, from PET reconstruction within 5 epochs.
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- 2022
30. Exploring the relationship between geomagnetic activity and human heart rate variability
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Matthew Mattoni, Sangtae Ahn, Carla Fröhlich, and Flavio Fröhlich
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medicine.medical_specialty ,Physiology ,Public Health, Environmental and Occupational Health ,030229 sport sciences ,General Medicine ,Human physiology ,Replicate ,Audiology ,Biology ,Affect (psychology) ,03 medical and health sciences ,0302 clinical medicine ,Earth's magnetic field ,Physiology (medical) ,Multiple comparisons problem ,Heart rate ,medicine ,Heart rate variability ,Orthopedics and Sports Medicine ,Very low frequency ,030217 neurology & neurosurgery - Abstract
Both geomagnetic and solar activity fluctuate over time and have been proposed to affect human physiology. Heart rate variability (HRV) has substantial health implications regarding the ability to adapt to stressors and has been shown to be altered in many cardiovascular and neurological disorders. Intriguingly, previous work found significant, strong correlations between HRV and geomagnetic/solar activity. The purpose of this study to replicate these findings. We simultaneously measured HRV during a 30-day period. We recruited 20 healthy participants and measured their HRV for a 30-day period. We also collected geomagnetic and solar activity during this period for investigating their relationship with the HRV data. In agreement with previous work, we found several significant correlations between short-term HRV and geophysical time-series. However, after correction for autocorrelation, which is inherent in time-series, the only significant results were an increase in very low frequency during higher local geomagnetic activity and a geomagnetic anticipatory decrease in heart rate a day before the higher global geomagnetic activity. Both correlations were very low. The loss of most significant effects after this correction suggests that previous findings may be a result of autocorrelation. A further note of caution is required since our and the previous studies in the field do not correct for multiple comparisons given the exploratory analysis strategy. We thus conclude that the effects of geomagnetic and solar activity are (if present) most likely of very small effect size and we question the validity of the previous studies given the methodological concerns we have uncovered with our work.
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- 2020
31. Targeting the Autonomic Nervous System Balance in Patients with Chronic Low Back Pain Using Transcranial Alternating Current Stimulation: A Randomized, Crossover, Double-Blind, Placebo-Controlled Pilot Study
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Maria I. Davila, Sangtae Ahn, Flavio Fröhlich, Julianna Prim, Karen L. McCulloch, and Morgan L. Alexander
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medicine.medical_specialty ,Stimulation ,Placebo ,03 medical and health sciences ,0302 clinical medicine ,stomatognathic system ,030202 anesthesiology ,Internal medicine ,medicine ,Back pain ,Heart rate variability ,030212 general & internal medicine ,Journal of Pain Research ,Vagal tone ,low back pain ,Transcranial alternating current stimulation ,Balance (ability) ,transcranial alternating current stimulation ,business.industry ,autonomic nervous system ,heart rate variability ,Low back pain ,3. Good health ,Autonomic nervous system ,Anesthesiology and Pain Medicine ,Clinical Trial Report ,Brain stimulation ,Cardiology ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
Julianna H Prim,1–3,* Sangtae Ahn,1,2,* Maria I Davila,1 Morgan L Alexander,1,2 Karen L McCulloch,3,4,* Flavio Fröhlich1,2,5–8,* 1Department of Psychiatry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; 2Carolina Center for Neurostimulation, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; 3Department of Allied Health Sciences, Human Movement Science Curriculum, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; 4Division of Physical Therapy, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; 5Department of Neurology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; 6Department of Biomedical Engineering, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; 7Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; 8Neuroscience Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA*These authors contributed equally to this workCorrespondence: Flavio FröhlichUniversity of North Carolina at Chapel Hill 116 Manning Dr, Mary Ellen Jones Building 6018, Chapel Hill, NC 27599, USATel +1 919 966 4584Email flavio_frohlich@med.unc.eduBackground: Chronic low back pain (CLBP) is characterized by an alteration in pain processing by the central nervous system that may affect autonomic nervous system (ANS) balance. Heart rate variability (HRV) reflects the balance of parasympathetic and sympathetic ANS activation. In particular, respiratory sinus arrhythmia (RSA) solely reflects parasympathetic input and is reduced in CLBP patients. Yet, it remains unknown if non-invasive brain stimulation can alter ANS balance in CLBP patients.Objective: To evaluate if non-invasive brain stimulation modulates the ANS, we analyzed HRV metrics collected in a previously published study of transcranial alternating current stimulation (tACS) for the modulation of CLBP through enhancing alpha oscillations. We hypothesized that tACS would increase RSA.Methods: A randomized, crossover, double-blind, sham-controlled pilot study was conducted to investigate the effects of 10Hz-tACS on metrics of ANS balance calculated from electrocardiogram (ECG). ECG data were collected for 2 mins before and after 40 mins of 10Hz-tACS or sham stimulation.Results: There were no significant changes in RSA or other frequency-domain HRV components from 10Hz-tACS. However, exploratory time-domain HRV analyses revealed a significant increase in the standard deviation of normal intervals between R-peaks (SDNN), a measure of ANS balance, for 10Hz-tACS relative to sham.Conclusion: Although tACS did not significantly increase RSA, we found in an exploratory analysis that tACS modulated an integrated HRV measure of both ANS branches. These findings support the further study of how the ANS and alpha oscillations interact and are modulated by tACS.ClinicalTrials.gov: Transcranial Alternating Current Stimulation in Back Pain – Pilot Study, NCT03243084.Keywords: low back pain, autonomic nervous system, heart rate variability, transcranial alternating current stimulation
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- 2019
32. Individualized diagnosis of preclinical Alzheimer’s Disease using deep neural networks
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Jinhee Park, Sehyeon Jang, Jeonghwan Gwak, Byeong C. Kim, Jang Jae Lee, Kyu Yeong Choi, Kun Ho Lee, Sung Chan Jun, Gil-Jin Jang, and Sangtae Ahn
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Artificial Intelligence ,General Engineering ,Computer Science Applications - Published
- 2022
33. Implementation and Image Quality Benefit of a Hybrid-Space PET Point Spread Function
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Timothy W. Deller, Sangtae Ahn, Floris P. Jansen, Georg Schramm, Kristen A. Wangerin, Matthew G. Spangler-Bickell, Charles W. Stearns, and Mohammad Mehdi Khalighi
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- 2021
34. Artificial Intelligence in PET: An Industry Perspective
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Arkadiusz, Sitek, Sangtae, Ahn, Evren, Asma, Adam, Chandler, Alvin, Ihsani, Sven, Prevrhal, Arman, Rahmim, Babak, Saboury, and Kris, Thielemans
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Radiography ,Artificial Intelligence ,Positron-Emission Tomography ,Image Processing, Computer-Assisted ,Humans - Abstract
Artificial intelligence (AI) has significant potential to positively impact and advance medical imaging, including positron emission tomography (PET) imaging applications. AI has the ability to enhance and optimize all aspects of the PET imaging chain from patient scheduling, patient setup, protocoling, data acquisition, detector signal processing, reconstruction, image processing, and interpretation. AI poses industry-specific challenges which will need to be addressed and overcome to maximize the future potentials of AI in PET. This article provides an overview of these industry-specific challenges for the development, standardization, commercialization, and clinical adoption of AI and explores the potential enhancements to PET imaging brought on by AI in the near future. In particular, the combination of on-demand image reconstruction, AI, and custom-designed data-processing workflows may open new possibilities for innovation which would positively impact the industry and ultimately patients.
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- 2021
35. Modulating neural oscillations by transcranial static magnetic field stimulation of the dorsolateral prefrontal cortex: A crossover, double-blind, sham-controlled pilot study
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Sankaraleengam Alagapan, Sangtae Ahn, Alec Sheffield, and Flavio Fröhlich
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Adult ,Male ,Adolescent ,Prefrontal Cortex ,Pilot Projects ,Stimulation ,Electroencephalography ,behavioral disciplines and activities ,Article ,Lateralization of brain function ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Double-Blind Method ,Cortex (anatomy) ,medicine ,Humans ,030304 developmental biology ,Balance (ability) ,0303 health sciences ,Cross-Over Studies ,medicine.diagnostic_test ,business.industry ,General Neuroscience ,Cognition ,Transcranial Magnetic Stimulation ,Dorsolateral prefrontal cortex ,Alpha Rhythm ,medicine.anatomical_structure ,Brain stimulation ,Female ,Occipital Lobe ,Beta Rhythm ,business ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Transcranial static magnetic field stimulation (tSMS) is a novel non-invasive brain stimulation technique that has been shown to locally increase alpha power in the parietal and occipital cortex. We investigated if tSMS locally increased alpha power in the left or right prefrontal cortex, as the balance of left/right prefrontal alpha power (frontal alpha asymmetry) has been linked to emotional processing and mood disorders. Therefore, altering frontal alpha asymmetry with tSMS may serve as a novel treatment to psychiatric diseases. We performed a crossover, double-blind, sham-controlled pilot study to assess the effects of prefrontal tSMS on neural oscillations. Twenty-four right-handed healthy participants were recruited and received left dorsolateral prefrontal cortex (DLPFC) tSMS, right DLPFC tSMS, and sham tSMS in a randomized order. Electroencephalography data were collected before (2 minutes eyes-closed, 2 minutes eyes-open), during (10 minutes eyes-open), and after (2 minutes eyes-open) stimulation. In contrast to our hypothesis, neither left nor right tSMS locally increased frontal alpha power. However, alpha power increased in occipital cortex during left DLPFC tSMS. Right DLPFC tSMS increased post-stimulation fronto-parietal theta power, indicating possible relevance to memory and cognition. Left and right DLPFC tSMS increased post-stimulation left hemisphere beta power, indicating possible changes to motor behavior. Left DLPFC tSMS also increased post-stimulation right frontal beta power, demonstrating complex network effects that may be relevant to aggressive behavior. We concluded that DLPFC tSMS modulated the network oscillations in regions distant from the location of stimulation and that tSMS has region specific effects on neural oscillations.
- Published
- 2018
36. Transcranial alternating current stimulation entrains alpha oscillations by preferential phase synchronization of fast-spiking cortical neurons to stimulation waveform
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Anna C. Hoover, Marshall Davey, Sangtae Ahn, Thien T. Doan, Flavio Fröhlich, D. J. Passey, Angel V. Peterchev, Iain Stitt, Susanne Radtke-Schuller, Ehsan Negahbani, Moritz Dannhauer, and Wei A. Huang
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Male ,0301 basic medicine ,Science ,Models, Neurological ,General Physics and Astronomy ,Alpha (ethology) ,Posterior parietal cortex ,Stimulation ,Transcranial Direct Current Stimulation ,Inhibitory postsynaptic potential ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,Thalamus ,Interneurons ,medicine ,Animals ,Premovement neuronal activity ,Computer Simulation ,Visual Cortex ,Transcranial alternating current stimulation ,Physics ,Multidisciplinary ,fungi ,Ferrets ,food and beverages ,Electroencephalography ,General Chemistry ,Magnetic Resonance Imaging ,Entrainment (biomusicology) ,Electrodes, Implanted ,Optogenetics ,Alpha Rhythm ,stomatognathic diseases ,030104 developmental biology ,Visual cortex ,medicine.anatomical_structure ,Computational neuroscience ,Models, Animal ,Female ,Nerve Net ,Tomography, X-Ray Computed ,Microelectrodes ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Computational modeling and human studies suggest that transcranial alternating current stimulation (tACS) modulates alpha oscillations by entrainment. Yet, a direct examination of how tACS interacts with neuronal spiking activity that gives rise to the alpha oscillation in the thalamo-cortical system has been lacking. Here, we demonstrate how tACS entrains endogenous alpha oscillations in head-fixed awake ferrets. We first show that endogenous alpha oscillations in the posterior parietal cortex drive the primary visual cortex and the higher-order visual thalamus. Spike-field coherence is largest for the alpha frequency band, and presumed fast-spiking inhibitory interneurons exhibit strongest coupling to this oscillation. We then apply alpha-tACS that results in a field strength comparable to what is commonly used in humans (, Transcranial alternating current stimulation (tACS) can modulate cortical oscillations and associated long-lasting cognitive and behavioral functions in humans. Here, the authors provide in vivo evidence in ferrets on the mechanism of how weak electric fields in tACS can entrain neuronal activity.
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- 2021
37. Adaptive Gradient Balancing for Undersampled MRI Reconstruction and Image-to-Image Translation
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Sangtae Ahn, Itzik Malkiel, Valentina Taviani, Christopher J. Hardy, Lior Wolf, and Anne Menini
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FOS: Computer and information sciences ,Hyperparameter ,Artificial neural network ,business.industry ,Image quality ,Computer science ,Computer Vision and Pattern Recognition (cs.CV) ,Image and Video Processing (eess.IV) ,Process (computing) ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Computer Science - Computer Vision and Pattern Recognition ,Electrical Engineering and Systems Science - Image and Video Processing ,Translation (geometry) ,Weighting ,Image (mathematics) ,FOS: Electrical engineering, electronic engineering, information engineering ,Image translation ,Computer vision ,Artificial intelligence ,business - Abstract
Recent accelerated MRI reconstruction models have used Deep Neural Networks (DNNs) to reconstruct relatively high-quality images from highly undersampled k-space data, enabling much faster MRI scanning. However, these techniques sometimes struggle to reconstruct sharp images that preserve fine detail while maintaining a natural appearance. In this work, we enhance the image quality by using a Conditional Wasserstein Generative Adversarial Network combined with a novel Adaptive Gradient Balancing (AGB) technique that automates the process of combining the adversarial and pixel-wise terms and streamlines hyperparameter tuning. In addition, we introduce a Densely Connected Iterative Network, which is an undersampled MRI reconstruction network that utilizes dense connections. In MRI, our method minimizes artifacts, while maintaining a high-quality reconstruction that produces sharper images than other techniques. To demonstrate the general nature of our method, it is further evaluated on a battery of image-to-image translation experiments, demonstrating an ability to recover from sub-optimal weighting in multi-term adversarial training., arXiv admin note: substantial text overlap with arXiv:1905.00985
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- 2021
38. Transcranial alternating current stimulation reduces network hypersynchrony and persistent vertigo
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Diamond Gleghorn, Yoon Hee Cha, Flavio Fröhlich, Benjamin C. Doudican, and Sangtae Ahn
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Mal de debarquement syndrome ,medicine.medical_specialty ,Alpha (ethology) ,Transcranial Direct Current Stimulation ,Article ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Vertigo ,medicine ,Humans ,Lead (electronics) ,Pathological ,Transcranial alternating current stimulation ,Neurons ,biology ,business.industry ,General Medicine ,Middle Aged ,biology.organism_classification ,Entrainment (biomusicology) ,Anesthesiology and Pain Medicine ,Neurology ,Brain stimulation ,Cardiology ,Neurology (clinical) ,Occipital Lobe ,business ,030217 neurology & neurosurgery - Abstract
OBJECTIVES Persistent oscillating vertigo that occurs after entrainment to periodic motion is known as Mal de Debarquement Syndrome (MdDS). Down-modulation of this oscillating vertigo is associated with reduction in long-range resting-state functional connectivity between fronto-parieto-occipital regions. In order to determine the association between this oscillating vertigo and hypersynchrony as measured by the auditory steady-state response (ASSR), we investigated the differences in ASSR between individuals with MdDS and healthy controls as well as the change in ASSR in individuals with MdDS before and after treatment with transcranial alternating current stimulation (tACS). MATERIALS AND METHODS Individuals with treatment refractory MdDS lasting at least six months received single administrations of fronto-parieto-occipital tACS in an "n-of-1" double-blind randomized design: alpha-frequency in-phase, alpha-frequency antiphase, and gamma frequency antiphase control. The treatment protocol that led to the most acute reduction in symptoms and improved balance was administered for 10-12 sessions given over three days (each session 20-min at 2-4 mA). RESULTS Twenty-four individuals with MdDS participated (mean age 53.0 ± 11.8 years [range: 22-66 years, median: 57.0 years]; mean duration of illness 38.6 ± 53.4 months [range: 6-240 months, median: 18.0 months]). Individuals with MdDS had elevated ASSR compared to healthy controls at baseline (t11 = 5.95, p
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- 2021
39. Correcting motion artifacts in MRI scans using a deep neural network with automatic motion timing detection
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Christopher J. Hardy, Michael Rotman, Rafi Brada, Sangtae Ahn, Israel Beniaminy, and Lior Wolf
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Scan time ,Compressed sensing ,Artificial neural network ,Motion artifacts ,business.industry ,Computer science ,Deep learning ,Computer vision ,Artificial intelligence ,business ,Mri scan ,Motion (physics) ,Rendering (computer graphics) - Abstract
Motion artefacts created by patient motion during an MRI scan occur frequently in practice, often rendering the scans clinically unusable and requiring a re-scan. While many methods have been employed to ameliorate the effects of patient motion, these often fall short in practice. In this paper we propose a novel method for detecting and timing patient motion during an MR scan and correcting for the motion artefacts using a deep neural network. The deep neural network contains two input branches that discriminate between patient poses using the motion’s timing. The first branch receives a subset of the k-space data collected during a single dominant patient pose, and the second branch receives the remaining part of the collected k-space data. The proposed method can be applied to artefacts generated by multiple movements of the patient. Furthermore, it can be used to correct motion for the case where k-space has been under-sampled to shorten the scan time, as is common when using methods such as parallel imaging or compressed sensing. Experimental results on both simulated and real MRI data show the efficacy of our approach.
- Published
- 2021
40. High theta and low alpha powers may be indicative of BCI-illiteracy in motor imagery.
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Minkyu Ahn, Hohyun Cho, Sangtae Ahn, and Sung Chan Jun
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Medicine ,Science - Abstract
In most brain computer interface (BCI) systems, some target users have significant difficulty in using BCI systems. Such target users are called 'BCI-illiterate'. This phenomenon has been poorly investigated, and a clear understanding of the BCI-illiteracy mechanism or a solution to this problem has not been reported to date. In this study, we sought to demonstrate the neurophysiological differences between two groups (literate, illiterate) with a total of 52 subjects. We investigated recordings under non-task related state (NTS) which is collected during subject is relaxed with eyes open. We found that high theta and low alpha waves were noticeable in the BCI-illiterate relative to the BCI-literate people. Furthermore, these high theta and low alpha wave patterns were preserved across different mental states, such as NTS, resting before motor imagery (MI), and MI states, even though the spatial distribution of both BCI-illiterate and BCI-literate groups did not differ. From these findings, an effective strategy for pre-screening subjects for BCI illiteracy has been determined, and a performance factor that reflects potential user performance has been proposed using a simple combination of band powers. Our proposed performance factor gave an r = 0.59 (r(2) = 0.34) in a correlation analysis with BCI performance and yielded as much as r = 0.70 (r(2) = 0.50) when seven outliers were rejected during the evaluation of whole data (N = 61), including BCI competition datasets (N = 9). These findings may be directly applicable to online BCI systems.
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- 2013
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41. Predictions of tDCS treatment response in PTSD patients using EEG based classification.
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Sangha Kim, Chaeyeon Yang, Suh-Yeon Dong, Seung-Hwan Lee, Sangtae Ahn, and van Lutterveld, Remko
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TRANSCRANIAL direct current stimulation ,POST-traumatic stress disorder ,SUPPORT vector machines ,ELECTROENCEPHALOGRAPHY - Abstract
Transcranial direct current stimulation (tDCS) is an emerging therapeutic tool for treating posttraumatic stress disorder (PTSD). Prior studies have shown that tDCS responses are highly individualized, thus necessitating the individualized optimization of treatment configurations. To date, an effective tool for predicting tDCS treatment outcomes in patients with PTSD has not yet been proposed. Therefore, we aimed to build and validate a tool for predicting tDCS treatment outcomes in patients with PTSD. Forty-eight patients with PTSD received 20 min of 2 mA tDCS stimulation in position of the anode over the F3 and cathode over the F4 region. Non-responders were defined as those with less than 50% improvement after reviewing clinical symptoms based on the Clinician-Administered DSM-5 PTSD Scale (before and after stimulation). Resting-state electroencephalograms were recorded for 3 min before and after stimulation. We extracted power spectral densities (PSDs) for five frequency bands. A support vector machine (SVM) model was used to predict responders and non-responders using PSDs obtained before stimulation. We investigated statistical differences in PSDs before and after stimulation and found statistically significant differences in the F8 channel in the theta band (p = 0.01). The SVM model had an area under the ROC curve (AUC) of 0.93 for predicting responders and non-responders using PSDs. To our knowledge, this study provides the first empirical evidence that PSDs can be useful biomarkers for predicting the tDCS treatment response, and that a machine learning model can provide robust prediction performance. Machine learningmodels based on PSDs can be useful for informing treatment decisions in tDCS treatment for patients with PTSD. [ABSTRACT FROM AUTHOR]
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- 2022
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42. Deep learning-based model observers that replicate human observers for PET imaging
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Kristen A. Wangerin, Craig K. Abbey, Paul E. Kinahan, Scott David Wollenweber, Fenglei Fan, Sangtae Ahn, and Bruno De Man
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Artificial neural network ,Computer science ,Two-alternative forced choice ,business.industry ,Image quality ,Deep learning ,Matched filter ,Linear model ,Pattern recognition ,Iterative reconstruction ,Artificial intelligence ,business ,Convolutional neural network - Abstract
Model observers that replicate human observers are useful tools for assessing image quality based on detection tasks. Linear model observers including nonprewhitening matched filters (NPWMFs) and channelized Hotelling observers (CHOs) have been widely studied and applied successfully to evaluate and optimize detection performance. However, there is still room for improvement in predicting human observer responses in detection tasks. In this study, we used a convolutional neural network to predict human observer responses in a two-alternative forced choice (2AFC) task for PET imaging. Lesion-absent and lesion-present images were reconstructed from clinical PET data with simulated lesions added to the liver and lungs and were used for the 2AFC task. We trained the convolutional neural network to discriminate images that human observers chose as lesion-present and lesion-absent in the 2AFC task. We evaluated the performance of the trained network by calculating the concordance between human observer responses and predicted responses from the network output and compared it to those of NPWMF and CHO. The trained network showed better agreement with human observers than the linear NPWMF and CHO model observers. The results demonstrate the potential for convolutional neural networks as model observers that better predict human performance. Such model observers can be used for optimizing scanner design, imaging protocols, and image reconstruction to improve lesion detection in PET imaging.
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- 2020
43. Progesterone modulates theta oscillations in the frontal-parietal network
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Trevor McPherson, Sangtae Ahn, Susan S. Girdler, Flavio Fröhlich, and Justin Riddle
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Adult ,Male ,Brain activity and meditation ,Cognitive Neuroscience ,medicine.medical_treatment ,Experimental and Cognitive Psychology ,Electroencephalography ,050105 experimental psychology ,Article ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Sex Factors ,Developmental Neuroscience ,Parietal Lobe ,medicine ,Humans ,0501 psychology and cognitive sciences ,Testosterone ,Theta Rhythm ,Saliva ,Biological Psychiatry ,Default mode network ,Progesterone ,030304 developmental biology ,0303 health sciences ,Resting state fMRI ,medicine.diagnostic_test ,Chemistry ,Endocrine and Autonomic Systems ,General Neuroscience ,05 social sciences ,Default Mode Network ,Frontal Lobe ,Steroid hormone ,Neuropsychology and Physiological Psychology ,medicine.anatomical_structure ,Neurology ,Scalp ,GABAergic ,Female ,Nerve Net ,Psychology ,Neuroscience ,030217 neurology & neurosurgery ,Hormone - Abstract
The neuroactive metabolites of the steroid hormones progesterone (P4) and testosterone (T) are GABAergic modulators that influence cognitive control, yet the specific effect of P4 and T on brain network activity remains poorly understood. Here, we investigated if a fundamental oscillatory network activity pattern related to cognitive control, frontal midline theta (FMT) oscillations, are modulated by steroids hormones, P4 and T. We measured the concentration P4 and T using salivary enzyme immunoassay and FMT oscillations using high-density electroencephalography (EEG) during the eyes-open resting state in fifty-five healthy female and male participants. Electrical brain activity was analyzed using Morlet wavelet convolution, beamformer source localization, background noise spectral fitting, and phase amplitude coupling analysis. Steroid hormone concentrations and biological sex were used as predictors for scalp and source-estimated theta oscillations and for top-down theta-gamma phase amplitude coupling. Elevated concentrations of P4 predicted increased FMT oscillatory amplitude across both sexes, and no relationship was found with T. The positive correlation with P4 was specific to the frontal-midline electrodes and survived correction for the background noise of the brain. Using source localization, FMT oscillations were localized to the frontal-parietal network. Additionally, theta amplitude within the frontal-parietal network, but not the default mode network, positively correlated with P4 concentration. Finally, P4 concentration correlated with increased coupling between FMT phase and posterior gamma amplitude. Our results suggest that P4 concentration modulates brain activity via upregulation of theta oscillations in the frontal-parietal network and increased top-down control over posterior cortical sites.Significance StatementThe neuroactive metabolites of the steroid hormones progesterone (P4) and testosterone (T) are GABAergic modulators that influence cognitive control, yet the specific effect of P4 and T on brain network activity remains poorly understood. Here, we investigated if a fundamental oscillatory network activity pattern related to cognitive control, frontal midline theta (FMT) oscillations, are modulated by steroids hormones, P4 and T. Our results suggest that P4 concentration modulates brain activity via upregulation of theta oscillations in the frontal-parietal network and increased top-down control over posterior cortical sites.
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- 2020
44. Neurophysiological substrates of configural face perception in schizotypy
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L. Fredrik Jarskog, Caroline Lustenberger, Sangtae Ahn, and Flavio Fröhlich
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medicine.medical_specialty ,Visual perception ,genetic structures ,Schizotypy ,media_common.quotation_subject ,Stimulus (physiology) ,Audiology ,Electroencephalography ,behavioral disciplines and activities ,Article ,050105 experimental psychology ,Schizotypal Personality Disorder ,03 medical and health sciences ,0302 clinical medicine ,Event-related potential ,Rating scale ,Face perception ,medicine ,Humans ,Contrast (vision) ,0501 psychology and cognitive sciences ,Set (psychology) ,Evoked Potentials ,Biological Psychiatry ,media_common ,medicine.diagnostic_test ,05 social sciences ,Neurophysiology ,medicine.disease ,030227 psychiatry ,Psychiatry and Mental health ,Schizophrenia ,Face ,Visual Perception ,Psychology ,Facial Recognition ,Photic Stimulation ,030217 neurology & neurosurgery - Abstract
Face perception is a highly developed function of the human visual system. Previous studies of event-related potentials (ERPs) have identified a face-selective ERP component (negative peak at about 170 milliseconds after stimulation onset, N170) in healthy participants. In contrast, patients with schizophrenia exhibit reduced amplitude of the N170, which may represent a pathological deficit in the neurophysiology of face perception. Interestingly, healthy humans with schizophrenia-like experiences (schizotypy) also exhibit abnormal processing of face perception. Yet, it has remained unknown how schizotypy in healthy humans is associated with the neurophysiological substrate of face perception. Here, we recruited 35 participants and assessed their schizotypy by the magical ideation rating scale. We used high-density electroencephalography to obtain ERPs elicited by a set of Mooney faces (face and non-face conditions). We divided the participants into two groups (high and low schizotypy) by a median split of schizotypy scores. We investigated mean reaction times and the N170 component in response to the stimuli. We found significant slowed reaction times and reduced amplitude of the N170 component in response to the face stimuli in the high-schizotypy group. In addition, across the full data set, we found that the schizotypy scores were significantly correlated with both the reaction times and the N170 amplitude. Our results thus support the model of schizotypy as a manifestation of a continuum between healthy individuals and patients with schizophrenia, where the N170 impairment serves as a biomarker for the degree of pathology along this continuum.
- Published
- 2020
45. Attenuation Coefficient Estimation for PET/MRI With Bayesian Deep Learning pseudo-CT and Maximum Likelihood Estimation of Activity and Attenuation
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Andrew P. Leynes, Peder E. Z. Larson, Thomas A. Hope, Sangtae Ahn, Florian Wiesinger, Kristen A. Wangerin, and Sandeep Kaushik
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medicine.diagnostic_test ,Mean squared error ,Attenuation ,Image and Video Processing (eess.IV) ,FOS: Physical sciences ,Magnetic resonance imaging ,Electrical Engineering and Systems Science - Image and Video Processing ,Convolutional neural network ,Physics - Medical Physics ,Atomic and Molecular Physics, and Optics ,Noise ,Attenuation coefficient ,medicine ,FOS: Electrical engineering, electronic engineering, information engineering ,Radiology, Nuclear Medicine and imaging ,Implant ,Medical Physics (physics.med-ph) ,Instrumentation ,Correction for attenuation ,Geology ,Biomedical engineering - Abstract
A major remaining challenge for magnetic resonance-based attenuation correction methods (MRAC) is their susceptibility to sources of MRI artifacts (e.g. implants, motion) and uncertainties due to the limitations of MRI contrast (e.g. accurate bone delineation and density, and separation of air/bone). We propose using a Bayesian deep convolutional neural network that, in addition to generating an initial pseudo-CT from MR data, also produces uncertainty estimates of the pseudo-CT to quantify the limitations of the MR data. These outputs are combined with MLAA reconstruction that uses the PET emission data to improve the attenuation maps. With the proposed approach (UpCT-MLAA), we demonstrate accurate estimation of PET uptake in pelvic lesions and show recovery of metal implants. In patients without implants, UpCT-MLAA had acceptable but slightly higher RMSE than Zero-echo-time and Dixon Deep pseudo-CT when compared to CTAC. In patients with metal implants, MLAA recovered the metal implant; however, anatomy outside the implant region was obscured by noise and crosstalk artifacts. Attenuation coefficients from the pseudo-CT from Dixon MRI were accurate in normal anatomy; however, the metal implant region was estimated to have attenuation coefficients of air. UpCT-MLAA estimated attenuation coefficients of metal implants alongside accurate anatomic depiction outside of implant regions., Comment: Accepted to the IEEE Transactions on Radiation and Plasma Medical Sciences on October 3, 2021. To be published under open access Creative Commons Attribution License (CC BY)
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- 2020
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46. Benefits of Using a Spatially-Variant Penalty Strength With Anatomical Priors in PET Reconstruction
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Brian Hutton, Simon R. Arridge, Kris Thielemans, Sangtae Ahn, Johan Nuyts, Georg Schramm, Yu-Jung Tsai, Alexandre Bousse, and Charles W. Stearns
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Computer science ,Iterative reconstruction ,Imaging phantom ,030218 nuclear medicine & medical imaging ,Lesion ,03 medical and health sciences ,0302 clinical medicine ,Level set ,Prior probability ,medicine ,Image Processing, Computer-Assisted ,Humans ,Electrical and Electronic Engineering ,Invariant (mathematics) ,Radiological and Ultrasound Technology ,business.industry ,Phantoms, Imaging ,Regular polygon ,Pattern recognition ,Thorax ,Computer Science Applications ,Rate of convergence ,Liver ,Positron-Emission Tomography ,Artificial intelligence ,medicine.symptom ,business ,Software ,Algorithms - Abstract
In this study, we explore the use of a spatially-variant penalty strength in penalized image reconstruction using anatomical priors to reduce the dependence of lesion contrast on surrounding activity and lesion location. This work builds on a previous method to make the local perturbation response (LPR) approximately spatially invariant. While the dependence of lesion contrast on the local properties introduced by the anatomical penalty is intentional, the method aims to reduce the influence from surroundings lying along the lines of response (LORs) but not in the penalty neighborhood structure. The method is evaluated using simulated data, assuming that the anatomical information is absent or well-aligned with the corresponding activity images. Since the parallel level sets (PLS) penalty is convex and has shown promising results in the literature, it is chosen as the representative anatomical penalty and incorporated into the previously proposed preconditioned algorithm (L-BFGS-B-PC) for achieving good image quality and fast convergence rate. A 2D disc phantom with a feature at the center and a 3D XCAT thorax phantom with lesions inserted in different slices are used to study how surrounding activity and lesion location affect the visual appearance and quantitative consistency. A bias and noise analysis is also performed with the 2D disc phantom. The consistency of the algorithm convergence rate with respect to different data noise and background levels is also investigated using the XCAT phantom. Finally, an example of reconstruction for a patient dataset with inserted pseudo lesions is used as a demonstration in a clinical context. We show that applying the spatially-variant penalization with PLS can reduce the dependence of the lesion contrast on the surrounding activity and lesion location. It does not affect the bias and noise trade-off curves for matched local resolution. Moreover, when using the proposed penalization, significant improvement in algorithm convergence rate and convergence consistency is observed. ispartof: IEEE TRANSACTIONS ON MEDICAL IMAGING vol:39 issue:1 pages:11-22 ispartof: location:United States status: published
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- 2020
47. Pinging the Brain with Transcranial Magnetic Stimulation Reveals Cortical Reactivity in Time and Space
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Sangtae Ahn and Flavio Fröhlich
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Male ,medicine.medical_treatment ,Biophysics ,Electroencephalography ,Auditory cortex ,Somatosensory system ,050105 experimental psychology ,Article ,lcsh:RC321-571 ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,0501 psychology and cognitive sciences ,Reactivity (psychology) ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,030304 developmental biology ,0303 health sciences ,N100 ,Cortical reactivity ,Transcranial direct-current stimulation ,Clinical neuroscience ,medicine.diagnostic_test ,business.industry ,General Neuroscience ,05 social sciences ,Motor Cortex ,Brain ,Cognition ,Evoked Potentials, Motor ,Transcranial magnetic stimulation ,Motor cortex excitability ,Transcranial direct current stimulation ,Neurology (clinical) ,business ,Neuroscience ,030217 neurology & neurosurgery ,Source localization - Abstract
Background Single-pulse transcranial magnetic stimulation (TMS) elicits an evoked electroencephalography (EEG) potential (TMS-evoked potential, TEP), which is interpreted as direct evidence of cortical reactivity to TMS. Thus, combining TMS with EEG can be used to investigate the mechanism underlying brain network engagement in TMS treatment paradigms. However, controversy remains regarding whether TEP is a genuine marker of TMS-induced cortical reactivity or if it is confounded by responses to peripheral somatosensory and auditory inputs. Resolving this controversy is of great significance for the field and will validate TMS as a tool to probe networks of interest in cognitive and clinical neuroscience. Objective Here, we delineated the cortical origin of TEP by spatially and temporally localizing successive TEP components, and modulating them with transcranial direct current stimulation (tDCS) to investigate cortical reactivity elicited by single-pulse TMS and its causal relationship with cortical excitability. Methods We recruited 18 healthy participants in a double-blind, cross-over, sham-controlled design. We collected motor-evoked potentials (MEPs) and TEPs elicited by suprathreshold single-pulse TMS targeting the left primary motor cortex (M1). To causally test cortical and corticospinal excitability, we applied tDCS to the left M1. Results We found that the earliest TEP component (P25) was localized to the left M1. The following TEP components (N45 and P60) were largely localized to the primary somatosensory cortex, which may reflect afferent input by hand-muscle twitches. The later TEP components (N100, P180, and N280) were largely localized to the auditory cortex. As hypothesized, tDCS selectively modulated cortical and corticospinal excitability by modulating the pre-stimulus mu-rhythm oscillatory power. Conclusion Together, our findings provide causal evidence that the early TEP components reflect cortical reactivity to TMS.
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- 2019
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- View/download PDF
48. Directed mammalian gene regulatory networks using expression and comparative genomic hybridization microarray data from radiation hybrids.
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Sangtae Ahn, Richard T Wang, Christopher C Park, Andy Lin, Richard M Leahy, Kenneth Lange, and Desmond J Smith
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Biology (General) ,QH301-705.5 - Abstract
Meiotic mapping of quantitative trait loci regulating expression (eQTLs) has allowed the construction of gene networks. However, the limited mapping resolution of these studies has meant that genotype data are largely ignored, leading to undirected networks that fail to capture regulatory hierarchies. Here we use high resolution mapping of copy number eQTLs (ceQTLs) in a mouse-hamster radiation hybrid (RH) panel to construct directed genetic networks in the mammalian cell. The RH network covering 20,145 mouse genes had significant overlap with, and similar topological structures to, existing biological networks. Upregulated edges in the RH network had significantly more overlap than downregulated. This suggests repressive relationships between genes are missed by existing approaches, perhaps because the corresponding proteins are not present in the cell at the same time and therefore unlikely to interact. Gene essentiality was positively correlated with connectivity and betweenness centrality in the RH network, strengthening the centrality-lethality principle in mammals. Consistent with their regulatory role, transcription factors had significantly more outgoing edges (regulating) than incoming (regulated) in the RH network, a feature hidden by conventional undirected networks. Directed RH genetic networks thus showed concordance with pre-existing networks while also yielding information inaccessible to current undirected approaches.
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- 2009
- Full Text
- View/download PDF
49. Clinical evaluation of TOF versus non-TOF on PET artifacts in simultaneous PET/MR: a dual centre experience
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Gaspar Delso, Martin W. Huellner, Greg Zaharchuk, Sangtae Ahn, Patrick Veit-Haibach, Andrei Iagaru, Edwin E. G. W. ter Voert, Mohammad Mehdi Khalighi, Florian Wiesinger, Craig S. Levin, University of Zurich, and Ter Voert, Edwin E G W
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Adult ,Male ,medicine.medical_specialty ,Time Factors ,genetic structures ,Image quality ,610 Medicine & health ,Signal-To-Noise Ratio ,Multimodal Imaging ,030218 nuclear medicine & medical imaging ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Image Processing, Computer-Assisted ,medicine ,2741 Radiology, Nuclear Medicine and Imaging ,Humans ,Radiology, Nuclear Medicine and imaging ,Aged ,Aged, 80 and over ,Dental Implants ,Fluorodeoxyglucose ,Artifact (error) ,medicine.diagnostic_test ,business.industry ,Magnetic resonance imaging ,10181 Clinic for Nuclear Medicine ,General Medicine ,Middle Aged ,equipment and supplies ,Magnetic Resonance Imaging ,Positron emission tomography ,Positron-Emission Tomography ,030220 oncology & carcinogenesis ,Female ,Radiology ,Tomography ,Artifacts ,Tomography, X-Ray Computed ,business ,Nuclear medicine ,Clinical evaluation ,Emission computed tomography ,circulatory and respiratory physiology ,medicine.drug - Abstract
Our objective was to determine clinically the value of time-of-flight (TOF) information in reducing PET artifacts and improving PET image quality and accuracy in simultaneous TOF PET/MR scanning. A total 65 patients who underwent a comparative scan in a simultaneous TOF PET/MR scanner were included. TOF and non-TOF PET images were reconstructed, clinically examined, compared and scored. PET imaging artifacts were categorized as large or small implant-related artifacts, as dental implant-related artifacts, and as implant-unrelated artifacts. Differences in image quality, especially those related to (implant) artifacts, were assessed using a scale ranging from 0 (no artifact) to 4 (severe artifact). A total of 87 image artifacts were found and evaluated. Four patients had large and eight patients small implant-related artifacts, 27 patients had dental implants/fillings, and 48 patients had implant-unrelated artifacts. The average score was 1.14 ± 0.82 for non-TOF PET images and 0.53 ± 0.66 for TOF images (p
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- 2017
50. Calretinin-Positive Mucosal Innervation (C-mi) as a Potential Biomarker to Predict Fibrosis in Crohn’s Disease (CD): A Pilot Study
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Mustafa Erdem Arslan, Sangtae Ahn, Hua Li, M Mikula, and Hwajeong Lee
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Pathology ,medicine.medical_specialty ,Crohn's disease ,business.industry ,Mucous membrane ,General Medicine ,medicine.disease ,medicine.anatomical_structure ,Fibrosis ,medicine ,Mucositis ,Immunohistochemistry ,Calretinin ,Signal transduction ,business ,Hirschsprung's disease - Abstract
Introduction/Objective There is no reliable biomarker to predict the degree of fibrosis in CD. Quantification of C-mi has been used as a surrogate for enteric neural structures in Hirschsprung disease. The quantity of C-mi at the proximal margin may correlate with the degree of fibrosis in resected CD. Methods Ileocolonic resection cases for 20 CD and 3 trauma (control) were retrieved. Cases with severe mucosal inflammation at the margins were excluded. The proximal and distal margin sections were subjected to calretinin immunohistochemistry. Random mucosal images were captured from scanned slides (x200, JPEG), submucosa was edited out, and C-mi was calculated by image processing and analysis. rC-mi was defined as the mean C-mi of proximal margin normalized by that of distal margin. Cases with rC-mi less than the mean rC-mi + 2 SD of the controls were excluded. The maximum thicknesses of submucosa and muscularis propria were measured at the most stenotic site, microscopically. Pearson’s correlation test and Student’s t-test were performed to correlate the parameters and compare the means, respectively. Results A total of 216 images were captured (mean 9.3 images per case; range 7 to 10). The mean rC-mi of CD (1.26) was greater than the controls (mean 0.43) (p Conclusion The rC-mi of CD was inversely correlated with submucosal fibrosis. Altered stromal integrity, impaired intercellular signaling, progressive reduction and loss of telocytes induced by submucosal fibrosis may reduce the regenerative capacity of enteric neural structures in CD. Therefore, a decreasing trend in rC-mi may predict fibrosis progression in CD.
- Published
- 2020
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