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21 results on '"Sanchez-Ramirez, Santiago"'

1. Demography reveals populational expansion of a recently extinct Iberian ungulate

Author

Forcina, Giovanni, Woutersen, Kees, Sanchez-Ramirez, Santiago, Angelone, Samer, Creampe, Jean, Perez, Jesus Maria, Fandos, Paulino, Granados Torres, Jose Enrique, Jowers, Michael, and Pensoft Publishers

Subjects
Ancient DNA, anthropocene biodiversity crisis, biotic impoverishment, Capra pyrenaica pyrenaica, Cytochrome-b, epizootics, extinction, museum specimens, public repositories, trophy hunting
Published
2021

2. Using comprehensive genomic and functional analyses for resolving genotype–phenotype mismatches in children with suspected CMMRD in Lebanon: an IRRDC study

Author

Hamideh, Dima, Das, Anirban, Bianchi, Vanessa, Chung, Jiil, Negm, Logine, Levine, Adrian, Basbous, Maya, Sanchez-Ramirez, Santiago, Mikael, Leonie, Jabado, Nada, Atweh, Lamya, Lteif, Mireille, Mahfouz, Rami, Tarek, Nidale, Abboud, Miguel, Muwakkit, Samar, Hawkins, Cynthia, Tabori, Uri, and Saab, Raya

Published
2023
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4. Supplementary Figures S1-S5 from Combined Immunotherapy Improves Outcome for Replication-Repair-Deficient (RRD) High-Grade Glioma Failing Anti–PD-1 Monotherapy: A Report from the International RRD Consortium

Author

Das, Anirban, primary, Fernandez, Nicholas R., primary, Levine, Adrian, primary, Bianchi, Vanessa, primary, Stengs, Lucie K., primary, Chung, Jiil, primary, Negm, Logine, primary, Dimayacyac, Jose Rafael, primary, Chang, Yuan, primary, Nobre, Liana, primary, Ercan, Ayse B., primary, Sanchez-Ramirez, Santiago, primary, Sudhaman, Sumedha, primary, Edwards, Melissa, primary, Larouche, Valerie, primary, Samuel, David, primary, Van Damme, An, primary, Gass, David, primary, Ziegler, David S., primary, Bielack, Stefan S., primary, Koschmann, Carl, primary, Zelcer, Shayna, primary, Yalon-Oren, Michal, primary, Campino, Gadi Abede, primary, Sarosiek, Tomasz, primary, Nichols, Kim E., primary, Loret De Mola, Rebecca, primary, Bielamowicz, Kevin, primary, Sabel, Magnus, primary, Frojd, Charlotta A., primary, Wood, Matthew D., primary, Glover, Jason M., primary, Lee, Yi-Yen, primary, Vanan, Magimairajan, primary, Adamski, Jenny K., primary, Perreault, Sebastien, primary, Chamdine, Omar, primary, Hjort, Magnus Aasved, primary, Zapotocky, Michal, primary, Carceller, Fernando, primary, Wright, Erin, primary, Fedorakova, Ivana, primary, Lossos, Alexander, primary, Tanaka, Ryuma, primary, Osborn, Michael, primary, Blumenthal, Deborah T., primary, Aronson, Melyssa, primary, Bartels, Ute, primary, Huang, Annie, primary, Ramaswamy, Vijay, primary, Malkin, David, primary, Shlien, Adam, primary, Villani, Anita, primary, Dirks, Peter B., primary, Pugh, Trevor J., primary, Getz, Gad, primary, Maruvka, Yosef E., primary, Tsang, Derek S., primary, Ertl-Wagner, Birgit, primary, Hawkins, Cynthia, primary, Bouffet, Eric, primary, Morgenstern, Daniel A., primary, and Tabori, Uri, primary

Published
2024
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5. Combined Immunotherapy Improves Outcome for Replication-Repair-Deficient (RRD) High-Grade Glioma Failing Anti–PD-1 Monotherapy: A Report from the International RRD Consortium

Author

Das, Anirban, primary, Fernandez, Nicholas R., additional, Levine, Adrian, additional, Bianchi, Vanessa, additional, Stengs, Lucie K., additional, Chung, Jiil, additional, Negm, Logine, additional, Dimayacyac, Jose Rafael, additional, Chang, Yuan, additional, Nobre, Liana, additional, Ercan, Ayse B., additional, Sanchez-Ramirez, Santiago, additional, Sudhaman, Sumedha, additional, Edwards, Melissa, additional, Larouche, Valerie, additional, Samuel, David, additional, Van Damme, An, additional, Gass, David, additional, Ziegler, David S., additional, Bielack, Stefan S., additional, Koschmann, Carl, additional, Zelcer, Shayna, additional, Yalon-Oren, Michal, additional, Campino, Gadi Abede, additional, Sarosiek, Tomasz, additional, Nichols, Kim E., additional, Loret De Mola, Rebecca, additional, Bielamowicz, Kevin, additional, Sabel, Magnus, additional, Frojd, Charlotta A., additional, Wood, Matthew D., additional, Glover, Jason M., additional, Lee, Yi-Yen, additional, Vanan, Magimairajan, additional, Adamski, Jenny K., additional, Perreault, Sebastien, additional, Chamdine, Omar, additional, Hjort, Magnus Aasved, additional, Zapotocky, Michal, additional, Carceller, Fernando, additional, Wright, Erin, additional, Fedorakova, Ivana, additional, Lossos, Alexander, additional, Tanaka, Ryuma, additional, Osborn, Michael, additional, Blumenthal, Deborah T., additional, Aronson, Melyssa, additional, Bartels, Ute, additional, Huang, Annie, additional, Ramaswamy, Vijay, additional, Malkin, David, additional, Shlien, Adam, additional, Villani, Anita, additional, Dirks, Peter B., additional, Pugh, Trevor J., additional, Getz, Gad, additional, Maruvka, Yosef E., additional, Tsang, Derek S., additional, Ertl-Wagner, Birgit, additional, Hawkins, Cynthia, additional, Bouffet, Eric, additional, Morgenstern, Daniel A., additional, and Tabori, Uri, additional

Published
2024
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6. Overview of Phylogenetic Approaches to Mycorrhizal Biogeography, Diversity and Evolution

Author

Sánchez-Ramírez, Santiago, Wilson, Andrew W., Ryberg, Martin, Caldwell, Martyn M., Series editor, Díaz, Sandra, Series editor, Heldmaier, Gerhard, Series editor, Jackson, Robert B., Series editor, Lange, Otto L., Series editor, Levia, Delphis F., Series editor, Mooney, Harold A., Series editor, Schulze, Ernst-Detlef, Series editor, Sommer, Ulrich, Series editor, and Tedersoo, Leho, editor

Published
2017
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7. Trial protocol 1 from Efficacy of Nivolumab in Pediatric Cancers with High Mutation Burden and Mismatch Repair Deficiency

Author

Das, Anirban, primary, Tabori, Uri, primary, Sambira Nahum, Lauren C., primary, Collins, Natalie B., primary, Deyell, Rebecca, primary, Dvir, Rina, primary, Faure-Conter, Cecile, primary, Hassall, Timothy E., primary, Minturn, Jane E., primary, Edwards, Melissa, primary, Brookes, Elissa, primary, Bianchi, Vanessa, primary, Levine, Adrian, primary, Stone, Simone C., primary, Sudhaman, Sumedha, primary, Sanchez Ramirez, Santiago, primary, Ercan, Ayse B., primary, Stengs, Lucie, primary, Chung, Jill, primary, Negm, Logine, primary, Getz, Gad, primary, Maruvka, Yosef E., primary, Ertl-Wagner, Birgit, primary, Ohashi, Pamela S., primary, Pugh, Trevor, primary, Hawkins, Cynthia, primary, Bouffet, Eric, primary, and Morgenstern, Daniel A., primary

Published
2023
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8. Supplementary Table S1 from Efficacy of Nivolumab in Pediatric Cancers with High Mutation Burden and Mismatch Repair Deficiency

Author

Das, Anirban, primary, Tabori, Uri, primary, Sambira Nahum, Lauren C., primary, Collins, Natalie B., primary, Deyell, Rebecca, primary, Dvir, Rina, primary, Faure-Conter, Cecile, primary, Hassall, Timothy E., primary, Minturn, Jane E., primary, Edwards, Melissa, primary, Brookes, Elissa, primary, Bianchi, Vanessa, primary, Levine, Adrian, primary, Stone, Simone C., primary, Sudhaman, Sumedha, primary, Sanchez Ramirez, Santiago, primary, Ercan, Ayse B., primary, Stengs, Lucie, primary, Chung, Jill, primary, Negm, Logine, primary, Getz, Gad, primary, Maruvka, Yosef E., primary, Ertl-Wagner, Birgit, primary, Ohashi, Pamela S., primary, Pugh, Trevor, primary, Hawkins, Cynthia, primary, Bouffet, Eric, primary, and Morgenstern, Daniel A., primary

Published
2023
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9. Suppl Figure S1 from Efficacy of Nivolumab in Pediatric Cancers with High Mutation Burden and Mismatch Repair Deficiency

Author

Das, Anirban, primary, Tabori, Uri, primary, Sambira Nahum, Lauren C., primary, Collins, Natalie B., primary, Deyell, Rebecca, primary, Dvir, Rina, primary, Faure-Conter, Cecile, primary, Hassall, Timothy E., primary, Minturn, Jane E., primary, Edwards, Melissa, primary, Brookes, Elissa, primary, Bianchi, Vanessa, primary, Levine, Adrian, primary, Stone, Simone C., primary, Sudhaman, Sumedha, primary, Sanchez Ramirez, Santiago, primary, Ercan, Ayse B., primary, Stengs, Lucie, primary, Chung, Jill, primary, Negm, Logine, primary, Getz, Gad, primary, Maruvka, Yosef E., primary, Ertl-Wagner, Birgit, primary, Ohashi, Pamela S., primary, Pugh, Trevor, primary, Hawkins, Cynthia, primary, Bouffet, Eric, primary, and Morgenstern, Daniel A., primary

Published
2023
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10. Data from Efficacy of Nivolumab in Pediatric Cancers with High Mutation Burden and Mismatch Repair Deficiency

Author

Das, Anirban, primary, Tabori, Uri, primary, Sambira Nahum, Lauren C., primary, Collins, Natalie B., primary, Deyell, Rebecca, primary, Dvir, Rina, primary, Faure-Conter, Cecile, primary, Hassall, Timothy E., primary, Minturn, Jane E., primary, Edwards, Melissa, primary, Brookes, Elissa, primary, Bianchi, Vanessa, primary, Levine, Adrian, primary, Stone, Simone C., primary, Sudhaman, Sumedha, primary, Sanchez Ramirez, Santiago, primary, Ercan, Ayse B., primary, Stengs, Lucie, primary, Chung, Jill, primary, Negm, Logine, primary, Getz, Gad, primary, Maruvka, Yosef E., primary, Ertl-Wagner, Birgit, primary, Ohashi, Pamela S., primary, Pugh, Trevor, primary, Hawkins, Cynthia, primary, Bouffet, Eric, primary, and Morgenstern, Daniel A., primary

Published
2023
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11. Efficacy of Nivolumab in Pediatric Cancers with High Mutation Burden and Mismatch Repair Deficiency

Author

Das, Anirban, primary, Tabori, Uri, additional, Sambira Nahum, Lauren C., additional, Collins, Natalie B., additional, Deyell, Rebecca, additional, Dvir, Rina, additional, Faure-Conter, Cecile, additional, Hassall, Timothy E., additional, Minturn, Jane E., additional, Edwards, Melissa, additional, Brookes, Elissa, additional, Bianchi, Vanessa, additional, Levine, Adrian, additional, Stone, Simone C., additional, Sudhaman, Sumedha, additional, Sanchez Ramirez, Santiago, additional, Ercan, Ayse B., additional, Stengs, Lucie, additional, Chung, Jill, additional, Negm, Logine, additional, Getz, Gad, additional, Maruvka, Yosef E., additional, Ertl-Wagner, Birgit, additional, Ohashi, Pamela S., additional, Pugh, Trevor, additional, Hawkins, Cynthia, additional, Bouffet, Eric, additional, and Morgenstern, Daniel A., additional

Published
2023
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12. Historical biogeography and diversification of ringless Amanita (section Vaginatae) support an African origin and suggest niche conservatism in the Americas

Author

Codjia, Jean Evans, I, Sanchez-Ramirez, Santiago, Ebika, Sydney T. Ndolo, Wu, Gang, Margaritescu, Simona, Komura, Dirce Leimi, Oliveira, Jadson J. S., Ryberg, Martin, Tulloss, Rodham E., Yorou, Nourou S., Moncalvo, Jean-Marc, Yang, Zhu L., Codjia, Jean Evans, I, Sanchez-Ramirez, Santiago, Ebika, Sydney T. Ndolo, Wu, Gang, Margaritescu, Simona, Komura, Dirce Leimi, Oliveira, Jadson J. S., Ryberg, Martin, Tulloss, Rodham E., Yorou, Nourou S., Moncalvo, Jean-Marc, and Yang, Zhu L.

Abstract

Ectomycorrhizal fungi (ECM) sustain nutrient recycling in most terrestrial ecosystems, yet we know little about what major biogeographical events gave rise to present-day diversity and distribution patterns. Given the strict relationship between some ECM lineages and their hosts, geographically well-sampled phylogenies are central to understanding major evolutionary processes of fungal biodiversity patterns. Here, we focus on Amanita sect. Vaginatae to address global diversity and distribution patterns. Ancestral-state-reconstruction based on a 4-gene timetree with over 200 species supports an African origin between the late Paleocene and the early Eocene (ca. 56 Ma). Major biogeographic "out-of-Africa" events include multiple dispersal events to Southeast Asia (ca. 45-21 Ma), Madagascar (ca. 18 Ma), and the current Amazonian basin (ca. 45-36 Ma), the last two likely transoceanic. Later events originating in Southeast Asia involve Nearctic dispersal to North America (ca. 20-5 Ma), Oceania (Australia and New Zealand; ca. 15 Ma), and Europe (ca. 10-5 Ma). Subsequent dispersals were also inferred from Southeast Asia to East Asia (ca. 4 Ma); from North America to East Asia (ca. 11-8 Ma), Southeast Asia (ca. 19-2 Ma), Northern Andes (ca. 15 Ma), and Europe (ca. 15-2 Ma), respectively; and from the Amazon to the Caribbean region (ca. 25-20 Ma). Finally, we detected a significant increase in the net diversification rates in the branch leading to most northern temperate species in addition to higher state-dependent diversification rates in temperate lineages, consistent with previous findings. These results suggest that species of sect. Vaginatae likely have higher dispersal ability and higher adaptability to new environments, in particular compared to those of its sister clade, sect. Caesareae. Overall, the much wider distribution of A. sect. Vaginatae, from pan-tropical to pan-arctic, provides a unique window to understanding niche conservatism across a species-rich clade

Published
2023
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15. Draft genomes of Amanita jacksonii, Ceratocystis albifundus, Fusarium circinatum, Huntiella omanensis, Leptographium procerum, Rutstroemia sydowiana, and Sclerotinia echinophila

Author

van der Nest, Magriet A., Beirn, Lisa A., Crouch, Jo Anne, Demers, Jill E., de Beer, Z. Wilhelm, De Vos, Lieschen, Gordon, Thomas R., Moncalvo, Jean-Marc, Naidoo, Kershney, Sanchez-Ramirez, Santiago, Roodt, Danielle, Santana, Quentin C., Slinski, Stephanie L., Stata, Matt, Taerum, Stephen J., Wilken, P. Markus, Wilson, Andrea M., Wingfield, Michael J., and Wingfield, Brenda D.

Published
2014
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17. IMA Genome-F 3C

Author

van der Nest, Magriet A., Beirn, Lisa A., Crouch, Jo Anne, Demers, Jill E., de Beer, Z. Wilhelm, De Vos, Lieschen, Gordon, Thomas R., Moncalvo, Jean-Marc, Naidoo, Kershney, Sanchez-Ramirez, Santiago, Roodt, Danielle, Santana, Quentin C., Slinski, Stephanie L., Stata, Matt, Taerum, Stephen J., Wilken, P. Markus, Wilson, Andrea M., Wingfield, Michael J., and Wingfield, Brenda D.

Subjects
Dispensable chromosome, Article
Abstract

The genomes of fungi provide an important resource to resolve issues pertaining to their taxonomy, biology, and evolution. The genomes of Amanita jacksonii, Ceratocystis albifundus, a Fusarium circinatum variant, Huntiella omanensis, Leptographium procerum, Sclerotinia echinophila, and Rutstroemia sydowiana are presented in this genome announcement. These seven genomes are from a number of fungal pathogens and economically important species. The genome sizes range from 27 Mb in the case of Ceratocystis albifundus to 51.9 Mb for Rutstroemia sydowiana. The latter also encodes for a predicted 17 350 genes, more than double that of Ceratocystis albifundus. These genomes will add to the growing body of knowledge of these fungi and provide a value resource to researchers studying these fungi.

Published
2014

18. Considerations and consequences of allowing DNA sequence data as types of fungal taxa

Author

Zamora, Juan Carlos, Svensson, Måns, Kirschner, Roland, Olariaga, Ibai, Ryman, Svengunnar, Alberto Parra, Luis, Geml, Jozsef, Rosling, Anna, Adamcik, Slavomir, Ahti, Teuvo, Aime, M. Catherine, Ainsworth, A. Martyn, Albert, Laszlo, Alberto, Edgardo, Garcia, Alberto Altes, Ageev, Dmitry, Agerer, Reinhard, Aguirre-Hudson, Begona, Ammirati, Joe, Andersson, Harry, Angelini, Claudio, Antonin, Vladimir, Aoki, Takayuki, Aptroot, Andre, Argaud, Didier, Sosa, Blanca Imelda Arguello, Aronsen, Arne, Arup, Ulf, Asgari, Bita, Assyov, Boris, Atienza, Violeta, Bandini, Ditte, Baptista-Ferreira, Joao Luis, Baral, Hans-Otto, Baroni, Tim, Barreto, Robert Weingart, Baker, Henry, Bell, Ann, Bellanger, Jean-Michel, Bellu, Francesco, Bemmann, Martin, Bendiksby, Mika, Bendiksen, Egil, Bendiksen, Katriina, Benedek, Lajos, Beresova-Guttova, Anna, Berger, Franz, Berndt, Reinhard, Bernicchia, Annarosa, Biketova, Alona Yu, Bizio, Enrico, Bjork, Curtis, Boekhout, Teun, Boertmann, David, Bohning, Tanja, Boittin, Florent, Boluda, Carlos G., Boomsluiter, Menno W., Borovicka, Jan, Brandrud, Tor Erik, Braun, Uwe, Brodo, Irwin, Bulyonkova, Tatiana, Burdsall, Harold H., Jr., Buyck, Bart, Burgaz, Ana Rosa, Calatayud, Vicent, Callac, Philippe, Campo, Emanuele, Candusso, Massimo, Capoen, Brigitte, Carbo, Joaquim, Carbone, Matteo, Castaneda-Ruiz, Rafael F., Castellano, Michael A., Chen, Jie, Clerc, Philippe, Consiglio, Giovanni, Corriol, Gilles, Courtecuisse, Regis, Crespo, Ana, Cripps, Cathy, Crous, Pedro W., da Silva, Gladstone Alves, da Silva, Meiriele, Dam, Marjo, Dam, Nico, Dammrich, Frank, Das, Kanad, Davies, Linda, De Crop, Eske, De Kesel, Andre, De Lange, Ruben, Bonzi, Barbara De Madrignac, dela Cruz, Thomas Edison E., Delgat, Lynn, Demoulin, Vincent, Desjardin, Dennis E., Diederich, Paul, Dima, Balint, Dios, Maria Martha, Divakar, Pradeep Kumar, Douanla-Meli, Clovis, Douglas, Brian, Drechsler-Santos, Elisandro Ricardo, Dyer, Paul S., Eberhardt, Ursula, Ertz, Damien, Esteve-Raventos, Fernando, Salazar, Javier Angel Etayo, Evenson, Vera, Eyssartier, Guillaume, Farkas, Edit, Favre, Alain, Fedosova, Anna G., Filippa, Mario, Finy, Peter, Flakus, Adam, Fos, Simon, Fournier, Jacques, Fraiture, Andre, Franchi, Paolo, Molano, Ana Esperanza Franco, Friebes, Gernot, Frisch, Andreas, Fryday, Alan, Furci, Giuliana, Marquez, Ricardo Galan, Garbelotto, Matteo, Garcia-Martin, Joaquina Maria, Otalora, Monica A. Garcia, Sanchez, Dania Garcia, Gardiennet, Alain, Garnica, Sigisfredo, Benavent, Isaac Garrido, Gates, Genevieve, Gerlach, Alice da Cruz Lima, Ghobad-Nejhad, Masoomeh, Gibertoni, Tatiana B., Grebenc, Tine, Greilhuber, Irmgard, Grishkan, Bella, Groenewald, Johannes Z., Grube, Martin, Gruhn, Gerald, Gueidan, Cecile, Gulden, Gro, Gusmao, Luis F. P., Hafellner, Josef, Hairaud, Michel, Halama, Marek, Hallenberg, Nils, Halling, Roy E., Hansen, Karen, Harder, Christoffer Bugge, Heilmann-Clausen, Jacob, Helleman, Stip, Henriot, Alain, Hernandez-Restrepo, Margarita, Herve, Raphael, Hobart, Caroline, Hoffmeister, Mascha, Hoiland, Klaus, Holec, Jan, Holien, Hakon, Hughes, Karen, Hubka, Vit, Huhtinen, Seppo, Ivancevic, Boris, Jagers, Marian, Jaklitsch, Walter, Jansen, AnnaElise, Jayawardena, Ruvishika S., Jeppesen, Thomas Stjernegaard, Jeppson, Mikael, Johnston, Peter, Jorgensen, Per Magnus, Karnefelt, Ingvar, Kalinina, Liudmila B., Kantvilas, Gintaras, Karadelev, Mitko, Kasuya, Taiga, Kautmanova, Ivona, Kerrigan, Richard W., Kirchmair, Martin, Kiyashko, Anna, Knapp, Daniel G., Knudsen, Henning, Knudsen, Kerry, Knutsson, Tommy, Kolarik, Miroslav, Koljalg, Urmas, Kosuthova, Alica, Koszka, Attila, Kotiranta, Heikki, Kotkova, Vera, Koukol, Ondrej, Kout, Jiri, Kovacs, Gabor M., Kriz, Martin, Kruys, Asa, Kudera, Viktor, Kudzma, Linas, Kuhar, Francisco, Kukwa, Martin, Kumar, T. K. Arun, Kunca, Vladimir, Kusan, Ivana, Kuyper, Thomas W., Lado, Carlos, Laessoe, Thomas, Laine, Patrice, Langer, Ewald, Larsson, Ellen, Larsson, Karl-Henrik, Laursen, Gary, Lechat, Christian, Lee, Serena, Lendemer, James C., Levin, Laura, Lindemann, Uwe, Lindstrom, Hakan, Liu, Xingzhong, Hernandez, Regulo Carlos Llarena, Llop, Esteve, Locsmandi, Csaba, Lodge, Deborah Jean, Loizides, Michael, Lokos, Laszlo, Luangsa-ard, Jennifer, Luderitz, Matthias, Lumbsch, Thorsten, Lutz, Matthias, Mahoney, Dan, Malysheva, Ekaterina, Malysheva, Vera, Manimohan, Patinjareveettil, Mann-Felix, Yasmina, Marques, Guilhermina, Martinez-Gil, Ruben, Marson, Guy, Mata, Gerardo, Matheny, P. Brandon, Mathiassen, Geir Harald, Matocec, Neven, Mayrhofer, Helmut, Mehrabi, Mehdi, Melo, Ireneia, Mesic, Armin, Methven, Andrew S., Miettinen, Otto, Romero, Ana M. Millanes, Miller, Andrew N., Mitchell, James K., Moberg, Roland, Moreau, Pierre-Arthur, Moreno, Gabriel, Morozova, Olga, Morte, Asuncion, Muggia, Lucia, Gonzalez, Guillermo Munoz, Myllys, Leena, Nagy, Istvan, Nagy, Laszlo G., Neves, Maria Alice, Niemela, Tuomo, Nimis, Pier Luigi, Niveiro, Nicolas, Noordeloos, Machiel E., Nordin, Anders, Noumeur, Sara Raouia, Novozhilov, Yuri, Nuytinck, Jorinde, Ohenoja, Esteri, Fiuza, Patricia Oliveira, Orange, Alan, Ordynets, Alexander, Ortiz-Santana, Beatriz, Pacheco, Leticia, Pal-Fam, Ferenc, Palacio, Melissa, Palice, Zdenek, Papp, Viktor, Partel, Kadri, Pawlowska, Julia, Paz, Aurelia, Peintner, Ursula, Pennycook, Shaun, Pereira, Olinto Liparini, Daniels, Pablo Perez, Capella, Miguel A. Perez-De-Gregorio, del Amo, Carlos Manuel Perez, Gorjon, Sergio Perez, Perez-Ortega, Sergio, Perez-Vargas, Israel, Perry, Brian A., Petersen, Jens H., Petersen, Ronald H., Pfister, Donald H., Phukhamsakda, Chayanard, Piatek, Marcin, Piepenbring, Meike, Pino-Bodas, Raquel, Esquivel, Juan Pablo Pinzon, Pirot, Paul, Popov, Eugene S., Popoff, Orlando, Alvaro, Maria Prieto, Printzen, Christian, Psurtseva, Nadezhda, Purahong, Witoon, Quijada, Luis, Rambold, Gerhard, Ramirez, Natalia A., Raja, Huzefa, Raspe, Olivier, Raymundo, Tania, Reblova, Martina, Rebriev, Yury A., Garcia, Juan de Dios Reyes, Ripoll, Miguel Angel Ribes, Richard, Franck, Richardson, Mike J., Rico, Victor J., Robledo, Gerardo Lucio, Barbosa, Flavia Rodrigues, Rodriguez-Caycedo, Cristina, Rodriguez-Flakus, Pamela, Ronikier, Anna, Casas, Luis Rubio, Rusevska, Katerina, Saar, Gunter, Saar, Irja, Salcedo, Isabel, Martinez, Sergio M. Salcedo, Montoya, Carlos A. Salvador, Sanchez-Ramirez, Santiago, Sandoval-Sierra, J. Vladimir, Santamaria, Sergi, Monteiro, Josiane Santana, Schroers, Hans Josef, Schulz, Barbara, Schmidt-Stohn, Geert, Schumacher, Trond, Senn-Irlet, Beatrice, Sevcikova, Hana, Shchepin, Oleg, Shirouzu, Takashi, Shiryaev, Anton, Siepe, Klaus, Sir, Esteban B., Sohrabi, Mohammad, Soop, Karl, Spirin, Viacheslav, Spribille, Toby, Stadler, Marc, Stalpers, Joost, Stenroos, Soili, Suija, Ave, Sunhede, Stellan, Svantesson, Sten, Svensson, Sigvard, Svetasheva, Tatyana Yu, Swierkosz, Krzysztof, Tamm, Heidi, Taskin, Hatira, Taudiere, Adrien, Tedebrand, Jan-Olof, Lahoz, Raul Tena, Temina, Marina, Thell, Arne, Thines, Marco, Thor, Goren, Thus, Holger, Tibell, Leif, Tibell, Sanja, Timdal, Einar, Tkalcec, Zdenko, Tonsberg, Tor, Trichies, Gerard, Triebel, Dagmar, Tsurykau, Andrei, Tulloss, Rodham E., Tuovinen, Veera, Sosa, Miguel Ulloa, Urcelay, Carlos, Valade, Francois, Garza, Ricardo Valenzuela, van den Boom, Pieter, Van Vooren, Nicolas, Vasco-Palacios, Aida M., Vauras, Jukka, Santos, Juan Manuel Velasco, Vellinga, Else, Verbeken, Annemieke, Vetlesen, Per, Vizzini, Alfredo, Voglmayr, Hermann, Volobuev, Sergey, von Brackel, Wolfgang, Voronina, Elena, Walther, Grit, Watling, Roy, Weber, Evi, Wedin, Mats, Weholt, Oyvind, Westberg, Martin, Yurchenko, Eugene, Zehnalek, Petr, Zhang, Huang, Zhurbenko, Mikhail P., Ekman, Stefan, Zamora, Juan Carlos, Svensson, Måns, Kirschner, Roland, Olariaga, Ibai, Ryman, Svengunnar, Alberto Parra, Luis, Geml, Jozsef, Rosling, Anna, Adamcik, Slavomir, Ahti, Teuvo, Aime, M. Catherine, Ainsworth, A. Martyn, Albert, Laszlo, Alberto, Edgardo, Garcia, Alberto Altes, Ageev, Dmitry, Agerer, Reinhard, Aguirre-Hudson, Begona, Ammirati, Joe, Andersson, Harry, Angelini, Claudio, Antonin, Vladimir, Aoki, Takayuki, Aptroot, Andre, Argaud, Didier, Sosa, Blanca Imelda Arguello, Aronsen, Arne, Arup, Ulf, Asgari, Bita, Assyov, Boris, Atienza, Violeta, Bandini, Ditte, Baptista-Ferreira, Joao Luis, Baral, Hans-Otto, Baroni, Tim, Barreto, Robert Weingart, Baker, Henry, Bell, Ann, Bellanger, Jean-Michel, Bellu, Francesco, Bemmann, Martin, Bendiksby, Mika, Bendiksen, Egil, Bendiksen, Katriina, Benedek, Lajos, Beresova-Guttova, Anna, Berger, Franz, Berndt, Reinhard, Bernicchia, Annarosa, Biketova, Alona Yu, Bizio, Enrico, Bjork, Curtis, Boekhout, Teun, Boertmann, David, Bohning, Tanja, Boittin, Florent, Boluda, Carlos G., Boomsluiter, Menno W., Borovicka, Jan, Brandrud, Tor Erik, Braun, Uwe, Brodo, Irwin, Bulyonkova, Tatiana, Burdsall, Harold H., Jr., Buyck, Bart, Burgaz, Ana Rosa, Calatayud, Vicent, Callac, Philippe, Campo, Emanuele, Candusso, Massimo, Capoen, Brigitte, Carbo, Joaquim, Carbone, Matteo, Castaneda-Ruiz, Rafael F., Castellano, Michael A., Chen, Jie, Clerc, Philippe, Consiglio, Giovanni, Corriol, Gilles, Courtecuisse, Regis, Crespo, Ana, Cripps, Cathy, Crous, Pedro W., da Silva, Gladstone Alves, da Silva, Meiriele, Dam, Marjo, Dam, Nico, Dammrich, Frank, Das, Kanad, Davies, Linda, De Crop, Eske, De Kesel, Andre, De Lange, Ruben, Bonzi, Barbara De Madrignac, dela Cruz, Thomas Edison E., Delgat, Lynn, Demoulin, Vincent, Desjardin, Dennis E., Diederich, Paul, Dima, Balint, Dios, Maria Martha, Divakar, Pradeep Kumar, Douanla-Meli, Clovis, Douglas, Brian, Drechsler-Santos, Elisandro Ricardo, Dyer, Paul S., Eberhardt, Ursula, Ertz, Damien, Esteve-Raventos, Fernando, Salazar, Javier Angel Etayo, Evenson, Vera, Eyssartier, Guillaume, Farkas, Edit, Favre, Alain, Fedosova, Anna G., Filippa, Mario, Finy, Peter, Flakus, Adam, Fos, Simon, Fournier, Jacques, Fraiture, Andre, Franchi, Paolo, Molano, Ana Esperanza Franco, Friebes, Gernot, Frisch, Andreas, Fryday, Alan, Furci, Giuliana, Marquez, Ricardo Galan, Garbelotto, Matteo, Garcia-Martin, Joaquina Maria, Otalora, Monica A. Garcia, Sanchez, Dania Garcia, Gardiennet, Alain, Garnica, Sigisfredo, Benavent, Isaac Garrido, Gates, Genevieve, Gerlach, Alice da Cruz Lima, Ghobad-Nejhad, Masoomeh, Gibertoni, Tatiana B., Grebenc, Tine, Greilhuber, Irmgard, Grishkan, Bella, Groenewald, Johannes Z., Grube, Martin, Gruhn, Gerald, Gueidan, Cecile, Gulden, Gro, Gusmao, Luis F. P., Hafellner, Josef, Hairaud, Michel, Halama, Marek, Hallenberg, Nils, Halling, Roy E., Hansen, Karen, Harder, Christoffer Bugge, Heilmann-Clausen, Jacob, Helleman, Stip, Henriot, Alain, Hernandez-Restrepo, Margarita, Herve, Raphael, Hobart, Caroline, Hoffmeister, Mascha, Hoiland, Klaus, Holec, Jan, Holien, Hakon, Hughes, Karen, Hubka, Vit, Huhtinen, Seppo, Ivancevic, Boris, Jagers, Marian, Jaklitsch, Walter, Jansen, AnnaElise, Jayawardena, Ruvishika S., Jeppesen, Thomas Stjernegaard, Jeppson, Mikael, Johnston, Peter, Jorgensen, Per Magnus, Karnefelt, Ingvar, Kalinina, Liudmila B., Kantvilas, Gintaras, Karadelev, Mitko, Kasuya, Taiga, Kautmanova, Ivona, Kerrigan, Richard W., Kirchmair, Martin, Kiyashko, Anna, Knapp, Daniel G., Knudsen, Henning, Knudsen, Kerry, Knutsson, Tommy, Kolarik, Miroslav, Koljalg, Urmas, Kosuthova, Alica, Koszka, Attila, Kotiranta, Heikki, Kotkova, Vera, Koukol, Ondrej, Kout, Jiri, Kovacs, Gabor M., Kriz, Martin, Kruys, Asa, Kudera, Viktor, Kudzma, Linas, Kuhar, Francisco, Kukwa, Martin, Kumar, T. K. Arun, Kunca, Vladimir, Kusan, Ivana, Kuyper, Thomas W., Lado, Carlos, Laessoe, Thomas, Laine, Patrice, Langer, Ewald, Larsson, Ellen, Larsson, Karl-Henrik, Laursen, Gary, Lechat, Christian, Lee, Serena, Lendemer, James C., Levin, Laura, Lindemann, Uwe, Lindstrom, Hakan, Liu, Xingzhong, Hernandez, Regulo Carlos Llarena, Llop, Esteve, Locsmandi, Csaba, Lodge, Deborah Jean, Loizides, Michael, Lokos, Laszlo, Luangsa-ard, Jennifer, Luderitz, Matthias, Lumbsch, Thorsten, Lutz, Matthias, Mahoney, Dan, Malysheva, Ekaterina, Malysheva, Vera, Manimohan, Patinjareveettil, Mann-Felix, Yasmina, Marques, Guilhermina, Martinez-Gil, Ruben, Marson, Guy, Mata, Gerardo, Matheny, P. Brandon, Mathiassen, Geir Harald, Matocec, Neven, Mayrhofer, Helmut, Mehrabi, Mehdi, Melo, Ireneia, Mesic, Armin, Methven, Andrew S., Miettinen, Otto, Romero, Ana M. Millanes, Miller, Andrew N., Mitchell, James K., Moberg, Roland, Moreau, Pierre-Arthur, Moreno, Gabriel, Morozova, Olga, Morte, Asuncion, Muggia, Lucia, Gonzalez, Guillermo Munoz, Myllys, Leena, Nagy, Istvan, Nagy, Laszlo G., Neves, Maria Alice, Niemela, Tuomo, Nimis, Pier Luigi, Niveiro, Nicolas, Noordeloos, Machiel E., Nordin, Anders, Noumeur, Sara Raouia, Novozhilov, Yuri, Nuytinck, Jorinde, Ohenoja, Esteri, Fiuza, Patricia Oliveira, Orange, Alan, Ordynets, Alexander, Ortiz-Santana, Beatriz, Pacheco, Leticia, Pal-Fam, Ferenc, Palacio, Melissa, Palice, Zdenek, Papp, Viktor, Partel, Kadri, Pawlowska, Julia, Paz, Aurelia, Peintner, Ursula, Pennycook, Shaun, Pereira, Olinto Liparini, Daniels, Pablo Perez, Capella, Miguel A. Perez-De-Gregorio, del Amo, Carlos Manuel Perez, Gorjon, Sergio Perez, Perez-Ortega, Sergio, Perez-Vargas, Israel, Perry, Brian A., Petersen, Jens H., Petersen, Ronald H., Pfister, Donald H., Phukhamsakda, Chayanard, Piatek, Marcin, Piepenbring, Meike, Pino-Bodas, Raquel, Esquivel, Juan Pablo Pinzon, Pirot, Paul, Popov, Eugene S., Popoff, Orlando, Alvaro, Maria Prieto, Printzen, Christian, Psurtseva, Nadezhda, Purahong, Witoon, Quijada, Luis, Rambold, Gerhard, Ramirez, Natalia A., Raja, Huzefa, Raspe, Olivier, Raymundo, Tania, Reblova, Martina, Rebriev, Yury A., Garcia, Juan de Dios Reyes, Ripoll, Miguel Angel Ribes, Richard, Franck, Richardson, Mike J., Rico, Victor J., Robledo, Gerardo Lucio, Barbosa, Flavia Rodrigues, Rodriguez-Caycedo, Cristina, Rodriguez-Flakus, Pamela, Ronikier, Anna, Casas, Luis Rubio, Rusevska, Katerina, Saar, Gunter, Saar, Irja, Salcedo, Isabel, Martinez, Sergio M. Salcedo, Montoya, Carlos A. Salvador, Sanchez-Ramirez, Santiago, Sandoval-Sierra, J. Vladimir, Santamaria, Sergi, Monteiro, Josiane Santana, Schroers, Hans Josef, Schulz, Barbara, Schmidt-Stohn, Geert, Schumacher, Trond, Senn-Irlet, Beatrice, Sevcikova, Hana, Shchepin, Oleg, Shirouzu, Takashi, Shiryaev, Anton, Siepe, Klaus, Sir, Esteban B., Sohrabi, Mohammad, Soop, Karl, Spirin, Viacheslav, Spribille, Toby, Stadler, Marc, Stalpers, Joost, Stenroos, Soili, Suija, Ave, Sunhede, Stellan, Svantesson, Sten, Svensson, Sigvard, Svetasheva, Tatyana Yu, Swierkosz, Krzysztof, Tamm, Heidi, Taskin, Hatira, Taudiere, Adrien, Tedebrand, Jan-Olof, Lahoz, Raul Tena, Temina, Marina, Thell, Arne, Thines, Marco, Thor, Goren, Thus, Holger, Tibell, Leif, Tibell, Sanja, Timdal, Einar, Tkalcec, Zdenko, Tonsberg, Tor, Trichies, Gerard, Triebel, Dagmar, Tsurykau, Andrei, Tulloss, Rodham E., Tuovinen, Veera, Sosa, Miguel Ulloa, Urcelay, Carlos, Valade, Francois, Garza, Ricardo Valenzuela, van den Boom, Pieter, Van Vooren, Nicolas, Vasco-Palacios, Aida M., Vauras, Jukka, Santos, Juan Manuel Velasco, Vellinga, Else, Verbeken, Annemieke, Vetlesen, Per, Vizzini, Alfredo, Voglmayr, Hermann, Volobuev, Sergey, von Brackel, Wolfgang, Voronina, Elena, Walther, Grit, Watling, Roy, Weber, Evi, Wedin, Mats, Weholt, Oyvind, Westberg, Martin, Yurchenko, Eugene, Zehnalek, Petr, Zhang, Huang, Zhurbenko, Mikhail P., and Ekman, Stefan

Abstract

Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.

Published
2018

19. High-level classification of the Fungi and a tool for evolutionary ecological analyses

Author

Tedersoo, Leho, Sanchez-Ramirez, Santiago, Koljalg, Urmas, Bahram, Mohammad, Doring, Markus, Schigel, Dmitry, May, Tom, Ryberg, Martin, Abarenkov, Kessy, Tedersoo, Leho, Sanchez-Ramirez, Santiago, Koljalg, Urmas, Bahram, Mohammad, Doring, Markus, Schigel, Dmitry, May, Tom, Ryberg, Martin, and Abarenkov, Kessy

Abstract

High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due to problems with alignments and the lack of a phylogenetic backbone. We propose an updated phylum-and class-level fungal classification accounting for monophyly and divergence time so that the main taxonomic ranks are more informative. Based on phylogenies and divergence time estimates, we adopt phylum rank to Aphelidiomycota, Basidiobolomycota, Calcarisporiellomycota, Glomeromycota, Entomophthoromycota, Entorrhizomycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota and Olpidiomycota. We accept nine subkingdoms to accommodate these 18 phyla. We consider the kingdom Nucleariae (phyla Nuclearida and Fonticulida) as a sister group to the Fungi. We also introduce a perl script and a newick-formatted classification backbone for assigning Species Hypotheses into a hierarchical taxonomic framework, using this or any other classification system. We provide an example of testing evolutionary ecological hypotheses based on a global soil fungal data set.

Published
2018
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21. Some new species and new varieties of Marasmius ( Marasmiaceae, Basidiomycota) from Atlantic Rainforest areas of São Paulo State, Brazil.

Author

Oliveira, Jadson, Sanchez-Ramirez, Santiago, and Capelari, Marina

Abstract

Marasmius is a widely represented genus in tropical areas, particularly in the Neotropics, which holds exceptional diversity. Previous studies have shown that traditional sections of the genus (e.g. sensu Singer) are still in conflict with phylogenetic data. This paper addresses some issues concerning morphology at the sectional level, section Neosessiles in particular, with regards to taxonomic concepts and partial phylogenetic relationships of new Neotropical species with interesting combinations of inter-sectional characteristics. Taxa descriptions in this study include Marasmius conchiformis sp. nov., M. conchiformis var. dispar var. nov., M. conchiformis var. lenipileatus var. nov., M. griseoroseus, M. griseoroseus var. diminutus var. nov., M. linderoides sp. nov., and M. longisetosus sp. nov. Some of these taxa have pleurotoid habit, and because this condition is poorly known in Marasmius, we considered it appropriate to look at their phylogenetic placement with respect to other species of the genus. We conducted Bayesian and Maximum Likelihood analyses on ribosomal 28S long subunit (LSU) and internal transcribed spacer (ITS) alignments to verify the singularity of the new taxa and to make an assessment of their relationships, regarding morphology, to other species of Marasmius. Overall, molecular and morphological data do support three new distinctive species and three varieties. Part of our findings also supports the view of some macromorphological and micromorphological characters as being highly homoplasic. [ABSTRACT FROM AUTHOR]

Published
2014
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