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Analysis of Holocene sedimentary seascape is focused on the Red Sea windward Al-Wajh platform margin, its central lagoon, and nearby isolated platforms based on data that include mapped ecological facies (habitats), water depths, grain sizes, and allochem types and abundances determined from thin sections. On this basis, a depositional model applicable to Red Sea Plio-Pleistocene and other ancient icehouse carbonate platforms is presented. The model highlights favorable reservoirs in analogous ancient systems to include coral crests and columnar framework habitats with primary porosity developed in boundstone lithologies and windward platform margins to contain considerable open pore space, including cavernous openings, of which not all should be anticipated to be occluded with marine cements and sediments. Meteoric diagenesis is expected to be minor as limited freshwater is available due to extreme aridity, but may play a role during glaciation.Most habitats have potential for secondary (enhanced) porosity resulting from dissolution of aragonite skeletons, particularly mollusk shells and calcareous coral (Scleractinia) endoskeletons. Central-lagoon habitats are expected to have the least favorable reservoir potential of environments considered because they are dominated by peloids. Central-lagoon sediment differs from other published localities, having higher peloid abundances, greater peloid distribution, and little or no association with Halimeda and quartz grains. Under the likely scenario that platform-interior sediments are completely bioturbated and comprise peloid-rich, grain-dominated fabrics, with many smaller peloids (most of them likely fecal pellets) at or near 4 μm in size (i.e., mud fraction), it is possible that grain size will control pore size once the considered deposits are lithified. If so, platform-interior sediments will lithify as mudstones, wackestones, or very fine-grained grainstones, an outcome which might otherwise be unexpected given the abundance of coarse peloid grains.The Al-Wajh platform is compared with 15 Holocene analogs and found to be unique with respect to rift-margin type, restricted-marine circulation, in having a lagoon with high peloid content, and lack of karst. In further comparison with ancient reservoir analogs, two greenhouse and four icehouse, it compares favorably to icehouse platforms deposited in rift basins with respect to mineralogy of deposition, meter-scale cycle thicknesses, and general peloid content and distribution. It provides a snapshot as to how an icehouse platform might have nucleated and attached along an active rift margin; it is a broadly applicable carbonate analog for the Red Sea Plio-Pleistocene and similar icehouse, rift basins.

The Miami Oolite of South Florida is representative of a grainstone‐rich carbonate unit that has been surficially karsted, and therefore may be considered as an analogue for subsurface reservoirs/aquifers with ‘high’ permeability extremes. The deposit can potentially serve to improve a conceptual understanding of heterogeneity as imparted by shallow‐marine facies changes and early meteoric diagenetic modification. Reviewed here are recent studies of the Miami Oolite with the intent to emphasize those key aspects of the facies and early diagenesis that most impact permeability and fluid flow. The Miami Oolite displays the preserved morphology of a fossilized ooid sandbody, even though it has been subaerially exposed in a tropical climate since its deposition approximately 120 kyr bp during the last interglacial highstand. The depositional motif is one of a dip‐oriented, tidal bar belt of shoals and shallow channels fronted by a strike‐oriented barrier bar. The barrier bar comprises cross‐stratified grainstones and locally burrowed grain/packstones, while the tidal shoals and channels are more commonly burrowed pack/grainstones. Surficial karst features (dolines and stratiform caves) have been added during the ca 120 kyr of subaerial exposure, but of more significance is the associated solution‐enhancement of the widespread burrowed facies. Since the Miami Oolite is the uppermost portion of the Biscayne Aquifer, there is also an understanding of fluid flow through the deposit that sheds valuable insight on the larger scale, shallow subsurface plumbing. The pore system comprises matrix pores (interparticle and separate vugs) and touching‐vug macropores that are commonly associated with burrowed [Ophiomorpha] intervals. Ground‐penetrating radar, well and flow test data indicate that matrix porosity provides most of the groundwater storage, whereas the touching vug macropores account for the majority of flow. The dolines and shallow caves seem to be sufficiently spaced as to generally not be in direct connection, with the result that they are less important in terms of regional flow than the prevailing pore system.

Recent studies of Holocene deposits on Great Bahama Bank (GBB) have focused on mapping of sediment distribution, an analysis of the variable filling of accommodation space, a comparison between ooid sandbodies and an examination of whitings and mud production. Collectively, these studies provide insight into the variability in depositional facies that challenge outcrop and subsurface interpretations. Missing from these analyses, however, has been a scrutiny of the physical controls over deposition. To partially explore these controls, a hydrodynamic model forced by prevailing ocean hydrodynamics, tides, winds and atmospheric pressure was developed. Current intensity and direction can be examined at short time steps over 1 year, and GBB can be partitioned into zones of mean annual hydrodynamic energy. Areas of vigorous tidal exchange correspond to localities where platform margin ooid sand shoals have developed. There is a predictive relationship between increasing peak current velocity and increasing area of the sandbody for the Cat, Joulter and Schooners Cays and Tongue of the Ocean sites. A connection between platform‐top hydrodynamics and the formation/suppression of whitings is evidenced west of Andros, suggesting a relationship between the production/deposition of platform‐top muds and off‐platform circulation. Filling of accommodation space can be partially related to platform topography and hydrodynamic flow. For instance, accommodation filling occurs locally along the platform margin by grainstones in areas of high tidal exchange as well as by mud accumulation leeward of islands. Conversely, the development of hiatal surfaces (sites of non‐deposition) occurs in areas not sheltered by islands, such as the southern GBB, where platform‐top currents are persistently vigorous. A broader understanding of platform‐top currents and their diverse controls can aid interpretation of the rock record, including the type and distribution of platform‐top sediments, the distribution of hiatal surfaces and, therefore, identification of locations which have the potential to host more complete depositional cycles.

With compelling evidence that half the world’s coral reefs have been lost over the last four decades, there is urgent motivation to understand where reefs are located and their health. Without such basic baseline information, it is challenging to mount a response to the reef crisis on the global scale at which it is occurring. To combat this lack of baseline data, the Khaled bin Sultan Living Oceans Foundation embarked on a 10-yr survey of a broad selection of Earth’s remotest reef sites—the Global Reef Expedition. This paper focuses on one output of this expedition, which is meter-resolution seafloor habitat and bathymetry maps developed from DigitalGlobe satellite imagery and calibrated by field observations. Distributed on an equatorial transect across 11 countries, these maps cover 65,000 sq. km of shallow-water reef-dominated habitat. The study represents an order of magnitude greater area than has been mapped previously at high resolution. We present a workflow demonstrating that DigitalGlobe imagery can be processed to useful products for reef conservation at regional to global scale. We further emphasize that the performance of our mapping workflow does not deteriorate with increasing size of the site mapped. Whereas our workflow can produce regional-scale benthic habitat maps for the morphologically diverse reefs of the Pacific and Indian oceans, as well as the more depauperate reefs of the Atlantic, accuracies are substantially higher for the former than the latter. It is our hope that the map products delivered to the community by the Living Oceans Foundation will be utilized for conservation and act to catalyze new initiatives to chart the status of coral reefs globally.

International audience; This study calls upon recently discovered aerial photographs for two atolls in the Indian Ocean Chagos Archi- pelago. Pairing these vintage data with modern satellite imagery allows the coastline dynamics of a suite of islands to be quantified over a 36-to-50-yr. period. Peros Banhos represents one of the few atolls globally where natural island dynamics can be appraised; withstanding just one of its 35 islands, this atoll has never been settled by humans. By contrast, Diego Garcia has undergone pronounced anthropogenic change in the last fifty years. Statistics bring new insights to the persistence of these atoll islands under the contemporary conditions of sea level rise. Key findings include: (i) Coastlines facing the prevailing trade winds retreat through time, while those in leeward positions expand; (ii) coastline expansion and retreat are in balance such that total land area of all the considered islands is virtually static over the last 50 years; and, (iii) small islands (

Characterizing benthic habitat sensitivities of rapidly-developing countries is of paramount importance. Recent efforts defining the benthic habitat of Qatar's coastal zone with a high-resolution, ground-truthed benthic habitat map has provided a framework on which to develop a habitat sensitivity map. Here we present a sensitivity analysis catered towards identifying habitats with varying sensitivities to natural and anthropogenic stressors on a quantitative scale from 1 to 5, low to high. We have identified that the majority of the coastal area is low risk habitat (i.e. sandflats). However, there are six areas which are assigned as high risk by virtue of their rich occurrences of seagrass meadows, mangrove forests, and coral reefs - [1]. The reefs offshore of Al Zubarah on the west coast of the peninsula; [2] The Al Ruwais fringing reef on the northern tip of the peninsula; [3] The east-coast bays of Al Khor and Al Dhakira; [4] The shore-attached reef complex off Mesaieed (east coast); [5] The Jazirat al Bushayriyah offshore high; and, [6] The entire shelf of Halul Island. The sensitivity analysis presented here builds on a recently-developed benthic habitat map of Qatar's coastal zone and covers a total are of 4500km2. Results gleaned from this analysis can be used to support marine spatial planning objectives and ecosystem-based management decision making.

A comprehensive, high resolution, ground truthed benthic habitat map has been completed for Qatar's coastal zone and Halul Island. The objectives of this research were to; 1. Systematically compare and contrast pixel- and object-based classifiers for benthic mapping in a limited focus area and then to, 2. Apply these learnings to develop an accurate high resolution benthic habitat map for the entirety of the Qatari coastal zone. Results indicate object-based methods proved more efficient and accurate when compared to pixel based classifiers. The developed country-wide map covers 4500 km2 and underscores the complex interplay of seagrass, macroalgal, and reefal habitats, as well as areas of expansive mangrove forests and microbial mats. The map developed here is a first of its kind in the region. Many potential applications exist for the datasets collected to provide fundamental information that can be used for ecosystem-based management decision making.

Carbonate facies often are used to define meter-scale parasequence (or cyclic) structure in ancient sedimentary basins. These parasequences constitute the fundamental stratigraphic unit in many studies of ancient climate and life on Earth. Of interest is the uncertainty associated with the assumptions that underpin the parasequence definition and interpretation. This work presents a method that uses modern maps of bathymetry and the geographic distribution of facies atop the Great Bahama Bank to extract a signal of water depth change from facies transitions in vertically stacked carbonate strata. This probabilistic approach incorporates the observed complexity in the water depth distribution of immediately adjacent modern carbonate environments, and results in an impartial and explicit interpretation of stratigraphic data with quantified uncertainties. Specifically, this analytical tool can distinguish sequences of facies that are likely to record information about changing water depths from sequences of facies that do not. Additionally, the quantitative signal extracted from sequences of discrete, or qualitative data, can be used for the correlation of stratigraphic sequences. By quantifying geologic observations through a lens of modern data, the reproducibility and accuracy of sedimentary interpretations can be improved to build a more authentic picture of Earth history.

Although numerous approaches for deriving water depth from bands of remotely-sensed imagery in the visible spectrum exist, digital terrain models for remote tropical carbonate landscapes remain few in number. The paucity is due, in part, to the lack of in situ measurements of pertinent information needed to tune water depth derivation algorithms. In many cases, the collection of the needed ground-truth data is often prohibitively expensive or logistically infeasible. We present an approach for deriving water depths up to 15 m in Case 1 waters, whose inherent optical properties can be adequately described by phytoplankton, using multi-spectral satellite imagery without the need for direct measurement of water depth, bottom reflectance, or water column properties within the site of interest. The reliability of the approach for depths up to 15 m is demonstrated for ten satellite images over five study sites. For this depth range, overall RMSE values range from 0.89 m to 2.62 m when using a chlorophyll concentration equal to 0.2 mg m−3 and a generic seafloor spectrum generated from a spectral library of common benthic constituents. Accuracy of water depth predictions drastically decreases beyond these depths. Sensitivity analyses show that the model is robust to selection of bottom reflectance inputs and sensitive to parameterization of chlorophyll concentration.

A robust airborne light detection and ranging digital terrain model (LiDAR DTM) and select outcrops are used to examine the extent and characteristics of the surficial karst overprint of the late Pleistocene Miami oolite in South Florida. Subaerial exposure of the Miami oolite barrier bar and shoals to a meteoric diagenetic environment, lasting ca. 120 kyr from the end of the last interglacial highstand MIS 5e until today, has resulted in diagenetic alteration including surface and shallow subsurface dissolution producing extensive dolines and a few small stratiform caves. Analysis of the LiDAR DTM suggests that >50% of the dolines in the Miami oolite have been obscured/lost to urbanization, though a large number of depressions remain apparent and can be examined for trends and spatial patterns. The verified dolines are analyzed for their size and depth, their lateral distribution and relation to depositional topography, and the separation distance between them. Statistical pattern analysis shows that the average separation distance and average density of dolines on the strike-oriented barrier bar versus dip-oriented shoals is statistically inseparable. Doline distribution on the barrier bar is clustered because of the control exerted on dissolution by the depositional topography of the shoal system, whereas patterning of dolines in the more platform-ward lower-relief shoals is statistically indistinguishable from random. The areal extent and depth of dissolution of the dolines are well described by simple mathematical functions, and the depth of the dolines increases as a function of their size. The separation and density results from the Miami oolite are compared to results from other carbonate terrains. Near-surface, stratiform caves in the Miami oolite occur in sites where the largest and deepest dolines are present, and sit at, or near, the top of the present water table.

The atolls and coral banks of the Chagos Archipelago (British Indian Ocean Territory) in the central Indian Ocean were badly affected by the warm water event that started in 2015 and lasted for nearly two years. On these reefs, coral mortality was very severe, reducing coral cover to

Exposures of the Pleistocene Miami oolite in South Florida provide excellent examples of preserved primary sedimentary features and subsequent diagenetic changes of a ‘fossilized’ ooid sand body that has been subaerially exposed in a tropical climate since its deposition during the last interglacial highstand – Marine Isotope Stage 5e. Using a robust airborne light detection and ranging digital terrain model and select outcrops, a detailed analysis of the morphologies and dimensions of the different portions of the Miami oolite was conducted. The sand body, extending 95 km north to south and approximately 15 km wide, consists of shoals (or bars) separated by tidal channels and is partly bounded on the ocean-facing side by a prograding barrier bar that collectively cover an area of approximately 1000 sq. km. Results of the quantitative interrogation of the Miami oolite are compared with those of previously published work from modern sand bodies on Great Bahama Bank including the Exumas, Schooners Cays and Tongue of the Ocean. Digital terrain models developed for these modern sand bodies on the Great Bahama Bank and the ancient Miami oolite were used as the basis for the definition of shoals, shoal crests (peaks) and channels which were examined with respect to their size, shape and orientation. The Exumas sand body is the best morphometric match when analysing the bars and the channels, and the Joulter Cays area is an analogue for the formation of the barrier bar and for burrow reworking of cross-bedding within stabilized sand shoals. The Exumas is a particularly compelling analogue for the Miami oolite with respect to length and overall visual comparison between the morphologies of the sand bodies, shoal (or bar) shape, number of tidal channels, channel length and width, and high areas parallel to the strike trend of the sand body (islands in the Exumas and possible islands as part of the Miami oolite barrier bar). Despite ca 115 kyr of subaerial exposure and meteoric diagenesis including karst, the morphology of the Miami oolite is still relatively intact to the point where it can be easily analysed and meaningful comparisons to modern systems can be made. The Miami oolite serves as a key reference example for comparison to Holocene sand units in the Bahamas – it validates the concept of comparative sedimentology and in particular emphasizes how results from the modern can improve the interpretation of a fossilized example.

This field and laboratory study examines whether regularly patterned biofilms on present-day intertidal flats are equivalent to microbially induced bedforms found in geological records dating back to the onset of life on Earth. Algal mats of filamentous Vaucheria species, functionally similar to microbial biofilms, cover the topographic highs of regularly spaced ridge-runnel bedforms. As regular patterning is typically associated with self-organization processes, indicators of self-organization are tested and found to support this hypothesis. The measurements suggest that biofilm-induced sediment trapping and biostabilization enhance bedform relief, strength and multi-year persistence. This demonstrates the importance of primitive organisms for sedimentary landscape development. Algal-covered ridges consist of wavy-crinkly laminated sedimentary deposits that resemble the layered structure of fossil stromatolites and microbially induced sedimentary structures. In addition to layering, both the morphological pattern and the suggested formation mechanism of the recent bedforms are strikingly similar to microbialite strata found in rock records from the Precambrian onwards. This implies that self-organization was an important morphological process in times when biofilms were the predominant sessile ecosystem. These findings furthermore emphasize that self-organization dynamics, such as critical transitions invoking ecosystem emergence or collapse, might have been captured in fossil microbialites, influencing their laminae. This notion may be important for paleoenvironmental reconstructions based on such strata. (c) 2019 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd

Integrated time-separated remote sensing, geographic information systems (GIS), microbiology, and carbonate sedimentology of the tidal-flat portion of Andros Island (Great Bahama Bank) quantify the geomorphologic change of tidal-flat facies through time and illustrate how sea-level rise, among other controls, is recorded within these deposits. In the 75 years spanned by the remote-sensing datasets, sea level has risen by approximately 10 cm. In the face of this change: a) the seaward margin of the tidal flats has remained static, while b) the internal boundary, which separates the channelized and supratidal marsh deposits, retrograded up to 220 m, broadening the channelized zone, and c) in unison to the broadening of the channelized zone, the abundance of laminated (Scytonema) cyanobacterial fabrics decreased, d) accompanied by the lengthening and avulsion of the network of tidal channels that traverse this zone. Given the amount of sea level rise during the period of observation, such broad-scale restructuring of the Andros tidal-flat architecture is surprising. The muddy tidal flats did not prograde, but instead aggraded and locally retrograded. Whereas retrogradation was minimal at the coastline, the channelized zone retrograded substantially over the more landward supratidal inland marsh. These results question aspects of the autocyclic model for the development of peritidal carbonate cycles, which is underpinned by a dominant behavior of tidal-flat progradation. Whereas other controls cannot be explicitly excluded, sea-level oscillations seemingly exerted considerably more impact on the Andros tidal flat in the last decades than did major storm events.

The planform pattern of carbonate lithofacies in shallow tropical systems have been described as both relatively simple (i.e. the lithofacies belt model) and highly complex (i.e., the lithofacies mosaic model). The lateral continuity of the lithofacies elements differs between these two descriptions with the former containing continuous strike-oriented elements while the latter contains numerous disjointed elements with no specified orientation under two conditions. First, we consider the lithofacies elements solely by their sediment texture, and second, we do not consider ecological constraints on the benthic communities. Using variography, we develop the spatial correlation index (SCI) for distinguishing between the two types of lithofacies arrangements and deploy the index to visualize the spatial distribution of belt-like and mosaic-like patterning for 7 lithofacies in 36 carbonate platforms. The visualizations suggest that the belt versus mosaic dichotomy does not adequately capture the complexity of lithofacies arrangements in modern carbonate systems. This limitation exists because carbonates primarily consist of biogenic sediments whose distribution is controlled by physical and ecological controls. Thus, taxonomy must be considered when examining these spatial patterns. Furthermore, there appears to be a co-occurrence of arrangements within each of the systems. Four motifs in the statistical distribution of the SCI values observed within the systems are identified. The motifs appear to depend on the biotic and abiotic factors of the sedimentary system under study. Belt-like arrangements for a framestone class appeared to be strongly associated with the higher energy environments, while mosaic-like arrangement for this class often occurred in sheltered, low-energy areas. For grainstone and wackestone classes, belt-like arrangements were located along the transition from platform rim to lagoon. Finally, the results suggest that a greater variety of sediment-texture arrangements may be observed in Modern shallow-water carbonate depositional systems than may be visible in Ancient systems observed within the rock record.

Being low and flat, atoll islands are often used as case studies against which to gauge the likely impacts of future sea-level rise on coastline stability. Furnished with lengthy temporal datasets, Pacific atolls form the majority of studies with scant information published for sites in the Indian Ocean. To address this imbalance, this study considers Diego Garcia, an atoll island situated in the remote equatorial Indian Ocean, which has undergone pronounced natural and anthropogenic change in the last fifty years. To explore the former, time separated remote sensing images spanning the years 1963–2013 are assembled to provide insight into the natural dynamics of the shoreline of this island and ocean climate data are compiled to investigate possible controls. Disregarding the precinct of the atoll on which a military complex has been constructed, overall land area of Diego Garcia decreased by a net value of only 0.92% between 1963 and 2013. While net island area is relatively unchanged, 12% of the shoreline that is not in the military precinct displayed discernible accretion and 15% has receded, with the lagoon-facing coastline having undergone the most pronounced changes and at rates higher than recorded for the island's exterior. Broad trends in the morphological adjustment of the island exist. The north-eastern limb of the atoll has generally receded while the south-eastern limb has extended. The south of the island has also extended, the south-western region has eroded and the north-western part has generally also eroded with the exception of notable shoreline extension at Simpson Point. The most common mechanism by which the lagoon-ward coastline has aggraded is through the in-filling of cuspate embayments with sediment which is later stabilized by the expansion of terrestrial vegetation. This evolution is most active in the complex network of embayments in the south of the atoll lagoon. The ocean-facing coastline, by contrast, typically aggrades and erodes through the linear shift of the vegetated coast along the strike of the beach line. While the areal extent of Diego Garcia has been almost static for the last half century, the annualized rate of flux of the coastline is considerable at 0.30 m yr − 1 ; a rate comparable to other atoll islands. The literature consistently reports two factors as relevant to increasing the rate of shoreline migration – human modification of it and sea-level rise. Both are foreseeably set to increase for Diego Garcia, the former due to its strategic importance, not least its use as a military base, and the latter due to global environmental change. The findings of this work serve to remind that the coastline of Diego Garcia, as for all atoll islands, is naturally dynamic and will likely become more so in the future.

A framework is proposed for utilizing remote sensing and ground-truthing field data to map benthic habitats in the State of Qatar, with potential application across the Arabian Gulf. Ideally the methodology can be applied to optimize the efficiency and effectiveness of mapping the nearshore environment to identify sensitive habitats, monitor for change, and assist in management decisions. The framework is applied to a case study for northeastern Qatar with a key focus on identifying high sensitivity coral habitat. The study helps confirm the presence of known coral and provides detail on a region in the area of interest where corals have not been previously mapped. Challenges for the remote sensing methodology associated with natural heterogeneity of the physical and biological environment are addressed. Recommendations on the application of this approach to coastal environmental risk assessment and management planning are discussed as well as future opportunities for improvement of the framework.

Great Bahama Bank (GBB) is the modern example of a flat-topped, isolated carbonate platform. It is a major modern location of carbonate deposition that stands behind much of the understanding of modern processes of carbonate sedimentation, serves as a training venue for academia and industry, is the basis for numerous geological models, and is commonly used as a reservoir analog. GBB also provides valuable insight into the extent and patterns of sediment fill of accommodation space atop an isolated carbonate platform. Satellite imagery (Landsat TM and ETM+) and an extensive set of water-depth measurements (n = 5,723) were used to map bathymetry across GBB and derive a digital terrain model (DTM). Analyzing the extent, patterns, and nature of sediment fill of accommodation space was facilitated by partitioning a depositional facies map on the basis of the DTM to show that 18% of accommodation on the GBB is “overfilled and filled” (emergent to −1.5 m water depth), 52% is “underfilled” (−1.5 to −6.0 m), and 30% is “unfilled” ( −1.5 m water depth) and therefore the greater part of available accommodation (88,000 km2) remains incompletely filled with sediment. Areas of filled accommodation mostly extend platformward from the western coastlines of islands, which in turn are preferentially distributed along the eastern (windward) margin of the GBB. Seventy percent of sediment in the areas of filled accommodation is rudstone, high-energy grainstone, grainstone, and mud-poor packstone. Although dominated by grainstones (45%), since it occupies so much space (55,000 km2), the underfilled sector also contains the most heterogeneous facies mosaic and by definition, therefore, the greatest and most complex lateral facies variations. Although islands are numerous (n = 1,430) they occupy only 8%, or 8,700 km2, of the platform top. Despite their small proportional occupancy of the platform, islands play a direct role in the accumulation of muddy fabrics and exert a sphere of influence over the character of sedimentation for many tens of kilometers from their coastlines. Further, since islands represent the portion of the bank where accommodation has been overfilled, their rarity emphasizes the challenges that such a large platform faces in filling accommodation space, even given the diverse grain factories producing carbonate sediment (mud precipitation through whitings, ooids and reefs along the platform margins, skeletal sediments and nonskeletal grains such as fecal pellets, peloids, and pelletoids). Two factors can be evoked to explain the inability of GBB to fill accommodation space. First, falling sea level during the Pleistocene appears to have repeatedly aborted the filling process. By analogy, it will not be able to do so in the Holocene either, a situation exasperated by the second factor, which is that most of the Holocene GBB, particularly areas away from islands, presently lack any appreciable filling. Instead, facies analysis suggest reduced sedimentation and enhanced cementation. Through regional mapping, the work delivers a platform-wide assessment of how accommodation is filled and the facies responsible for the filling. Amongst other trends, by highlighting how the thickest accumulations of Holocene sediment are skewed to the windward margin of the GBB and related to the presence of islands, whereas the thinner accumulations, which dominate the platform interior and are more grainy but also more heterogeneous than the thicker deposits, these data might contain useful guidelines as to how depositional cycles might vary laterally in ancient systems.

Lack of knowledge on the conservation value of different reef types can stymie decision making, and result in less optimal management solutions. Addressing the information gap of coral reef resilience, we produce a map-based Remote Sensed Resilience Index (RSRI) from data describing the spatial distribution of stressors, and properties of reef habitats on the Farasan Banks, Saudi Arabia. We contrast the distribution of this index among fourteen reef types, categorized on a scale of maturity that includes juvenile (poorly aggraded), mature (partially aggraded), and senile (fully aggraded) reefs. Sites with high reef resilience can be found in most detached reef types; however they are most common in mature reefs. We aim to stimulate debate on the coupling that exists between geomorphology and conservation biology, and consider how such information can be used to inform management decisions.

Environmental conditions and anthropogenic impacts are key influences on ecological processes and associated ecosystem services. Effective management of Tonga’s marine ecosystems therefore depends on accurate and up-to-date knowledge of environmental and anthropogenic variables. Although many types of environmental and anthropogenic data are now available in global layers, they are often inaccessible to end users, particularly in developing countries with limited accessibility and analytical training. Furthermore, the resolution of many global layers might not be sufficient to make informed local decisions. Although the near-shore marine ecosystem of Tonga is extensive, the resources available for its management are limited, and little is known about its current ecological state. Here we provide a marine socio-environmental dataset covering Tonga’s near-shore marine ecosystem as compiled from various global layers, remote sensing projects, local ministries, and the 2016 national census. The dataset consists of 11 environmental and 6 anthropogenic variables summarised in ecologically relevant ways, spatially overlaid across the near-shore marine ecosystem of Tonga. The environmental variables selected include bathymetry, coral reef density, distance from deep water, distance from land, distance from major terrestrial inputs, habitat, land area, net primary productivity, salinity, sea surface temperature and wave energy. The anthropogenic variables selected include fishing pressure, management status, distance to fish markets, distance from villages, population pressure and a socioeconomic development index based on population density, growth, mean age, mean education level and unemployment. We hope this extensive and accessible dataset will be a useful tool for future assessment and management of marine ecosystems in Tonga.

Eleven grouper, snapper, and emperor fish species were intentionally released in the Hawaiian Islands spanning the years 1955–1961 to produce new fisheries. Within 15 years, three of the introduced species established self-sustaining populations and eight did not. Two species, Lutjanus kasmira and Cephalopholis argus , are now considered invasive. We report on the results of a biophysical computer model which combines the life history traits of the inductees with prevailing oceanographic conditions in the Hawaiian Islands to hindcast the fate of the introduced fish. This comparative study is valuable in providing numeric insight into the characteristics that predispose fish introduced outside their native range to becoming invasive. Simulations created by the model spanning the years 1955–1970 succeeded to reproduce the establishment of the three species now found in the Hawaiian Islands and also replicated the failure of those fish that did not establish. Our results suggest that mortality rate, tolerance to water depth, age to maturity, and the quantity of individuals released are the best predictors of the establishment of the introduced fish in the Hawaiian Islands.

As for terrestrial remote sensing, pixel-based classifiers have traditionally been used to map coral reef habitats. For pixel-based classifiers, habitat assignment is based on the spectral or textural properties of each individual pixel in the scene. More recently, however, object-based classifications, those based on information from a set of contiguous pixels with similar properties, have found favor with the reef mapping community and are starting to be extensively deployed. Object-based classifiers have an advantage over pixel-based in that they are less compromised by the inevitable inhomogeneity in per-pixel spectral response caused, primarily, by variations in water depth. One aspect of the object-based classification workflow is the assignment of each image object to a habitat class on the basis of its spectral, textural, or geometric properties. While a skilled image interpreter can achieve this task accurately through manual editing, full or partial automation is desirable for large-scale reef mapping projects of the magnitude which are useful for marine spatial planning. To this end, this paper trials the use of multinomial logistic discrete choice models to classify coral reef habitats identified through object-based segmentation of satellite imagery. Our results suggest that these models can attain assignment accuracies of about 85%, while also reducing the time needed to produce the map, as compared to manual methods. Limitations of this approach include misclassification of image objects at the interface between some habitat types due to the soft gradation in nature between habitats, the robustness of the segmentation algorithm used, and the selection of a strong training dataset. Finally, due to the probabilistic nature of multinomial logistic models, the analyst can estimate a map of uncertainty associated with the habitat classifications. Quantifying uncertainty is important to the end-user when developing marine spatial planning scenarios and populating spatial models from reef habitat maps.

Marine ecological services provide goods, amenities, food resources, and economic benefits to millions of people globally. The loss of these services, attributed to the infiltration of marine invasive species such as the Indo-Pacific lionfish (Pterois volitans/miles), is measurable. The highly successful lionfish now flourishes in great densities in the US Gulf of Mexico and Atlantic waters and the entire Caribbean, yet the loss of ecological services attributed to the invader has not yet been assessed. In this study, we employ a derivative of a well-utilized method of ecosystem valuation known as habitat equivalency analysis to measure the time-value-adjusted loss of biomass- and recruitment-related ecosystem services brought by lionfish to Bahamian reefs. Drawing upon the literature examples of tangible lionfish damages in the Bahamas, we (1) quantitatively evaluate the loss of ecosystem services instigated by lionfish by measuring the total service-year losses partitioned over yearly time steps, (2) provide a metric by which ocean managers may value the remunerations of Bahamian lionfish controls when weighed against removal costs, and (3) deliver a tool to quantify changes in ecosystem services as a consequence of invasive species impacts and control. We found that the invader imposed losses of 26.67 and 21.67 years to recruitment and biomass services per km2 of Bahamian reef if left uncontrolled. In the same accord, the most conservative Bahamian lionfish removal regime modeled, i.e., which produced a 50 % recovery of pre-lionfish ecosystem function over 10 years, provided service gains of 9.57 and 4.78 years per km2. These data deliver a platform upon which to quantify present and future fiscal costs of the lionfish invasion and also to value lionfish control efforts.

Atlantic lionfish have caused measurable ecosystem damage in their invaded range. As a matter of urgency, strategies to suppress lionfish have therefore risen to the fore amongst the ocean management community. We use a biophysical model and ocean climate data to demon- strate how Atlantic lionfish larvae are dispersed by currents and how this dispersal, combined with their breeding strategy, negates effective control using methods traditionally executed on a local scale. This study quantitatively emphasizes the high level of larval connectivity that exists between the many nations whose waters now support established lionfish populations. For any given area, our results indicate that the key to suppressing the invasion is to simultaneously choke all upstream linkages that supply external larvae and renourish the local population. On the basis of a case study developed for the Carolinas, USA, an area of high lionfish abundance, the model suggests that such a strategy requires monthly culls that remove 20% of lionfish biomass in the Carolinas and all locations to which the Carolinas are linked hydrographically. Conversely, if culls target only those locales that deliver the majority (95%) of lionfish larvae to the Carolinas, and therefore ignore those locations which contribute the remaining 5% of lionfish larvae, the requi- site cull rate exceeds 60% and suppresses lionfish abundance for only 5 yr. The latter finding exposes an intrinsic danger: sparse lionfish left uncontrolled may derail a concerted, yet not com- prehensive, effort to control the invader. This study provides a modelling approach to quantita- tively target and manage the lionfish population for nations whose waters are now plagued by invasive lionfish.

In recent years, considerable research has been undertaken in order to gain a better quantitative understanding of morphometric patterns within modern carbonate depositional systems. The industrial application of the scaling/juxtaposition relationships derived from the Modern to subsurface Cenozoic carbonate reservoirs appears relatively straightforward, given that many key biota are common to both. However, the direct application of Modern sedimentary insight further back into the geologic rock record is more controversial, given the enormous changes in the biota, climate, sea level, water chemistry and so on, that have taken place. To justify such an approach, we contend that similar morphometric patterns should be observed in both the Modern and ancient data. In the Norwegian Barents Sea, numerous seismic surveys have imaged Upper Palaeozoic carbonate buildups arranged in polygonal networks, or reticular patterns. These patterns are observed in both warm water photozoan and cool water heterozoan carbonate stratigraphies, and are developed atop platforms founded on stable shelves, in tectonically active settings and platforms developed over basinal evaporites. GIS mapping of multiple seismic horizons allows the Palaeozoic reticulated morphology to be numerically compared to that mapped in Alacranes Reef from QuickBird satellite imagery. QuickBird's metre-scale resolution allows identification of subtle cross-platform trends, such as windward-leeward differences in the packing density of ridge-and-pond complexes, which can be correlated with the kilometre-scale patterning extracted in the Barents subsurface. Despite different controls and architecture, the patterning of reticular networks is statistically inseparable between the two systems, once the metre-scale Modern dataset is down-sampled to seismic resolution. Whilst other controls cannot unequivocally be ruled out, these results suggest that biotic self-organisation is a fundamental driver of sedimentary patterns on carbonate platforms. To our knowledge, this is the first quantitative comparison of morphometric patterns from the Modern and Palaeozoic that clearly reveals similar patterns of self-organisation. For the depositional environments considered, the findings suggest that juxtaposition rules, facies proportions and scaling relationships extracted from the Modern can successfully be applied to the ancient.

In this study, we demonstrate how perturbations to the Florida Current caused by hurricanes are relevant to the spread of invasive lionfish from Florida to the Bahamas. Without such perturbations, this current represents a potential barrier to the transport of planktonic lionfish eggs and larvae across the Straits of Florida. We further show that once lionfish became established in the Bahamas, hurricanes significantly hastened their spread through the island chain. We gain these insights through: (1) an analysis of the direction and velocity of simulated ocean currents during the passage of hurricanes through the Florida Straits and (2) the development of a biophysical model that incorporates the tolerances of lionfish to ocean climate, their reproductive strategy, and duration that the larvae remain viable in the water column. On the basis of this work, we identify 23 occasions between the years 1992 and 2006 in which lionfish were provided the opportunity to breach the Florida Current. We also find that hurricanes during this period increased the rate of spread of lionfish through the Bahamas by more than 45% and magnified its population by at least 15%. Beyond invasive lionfish, we suggest that extreme weather events such as hurricanes likely help to homogenize the gene pool for all Caribbean marine species susceptible to transport.

The remote northernmost Galapagos Islands, Darwin and Wenman, exhibited well-developed coral communities in 1975, which were severely degraded during the 1982–1983 El Nino warming event. Mapping of the coral reef at Darwin, herein Wellington Reef, shows it presently to be the largest known structural reef in the Galapagos. It consists of numerous 1- to 3-m-high Porites framework towers or stacks and overlies a carbonate (coral/calcareous sediments) basement. Pre-disturbance Wellington Reef was constructed chiefly by Porites lobata and Pocillopora elegans, and Wenman coral cover was dominated by Pavona clavus and Porites lobata. Subsequent surveys in 2012 have demonstrated robust recovery in spite of ENSO thermal shock events, involving both high and low stressful temperatures that have caused tissue bleaching and mortality. No losses of coral species have been observed. Radiocarbon dating of 1- to 3-m-high poritid framework stacks, from their peaks to bases, revealed modern ages of up to 690 yr. Incremental stack growth rates ranged from 0.15–0.39 to 1.04–2.40 cm yr−1. The former are equivalent to framework accretion rates of 1.5–3.9 m Kyr−1, the latter to coral skeletal growth rates of 1.0–2.4 cm yr−1. Coral recovery in the central and southern Galapagos has been nonexistent to low compared with the northern islands, due chiefly to much higher population densities and destructive grazing pressure of the echinoid Eucidaris galapagensis. Thus, coral reef resistance to ENSO perturbations and recovery potential in the Galapagos are influenced by echinoid bioerosion that varies significantly among islands.

Reticulate ridges of reefs and sediment in Holocene lagoons are usually interpreted as an inheritance of antecedent karst topography. Satellite imagery served as a template for integrating plan-view geometry with published data from coring, drilling and seismic surveys to test the antecedent-karst hypothesis. The link between karst morphology and overlying reef patterns can be demonstrated convincingly for a rather limited number of examples, particularly those on a substrate of tower karst with high relief. On very young limestones, doline karst with reticulate patterns develops very slowly because of the high porosity. Moreover, karst control can be ruled out for the significant number of reticulate reefs that are founded on terrigenous sediment or on demonstrably flat pre-Holocene rock surfaces. One likely cause of reticulate patterns is biotic self-organization that has been shown to generate reticulate and labyrinthic patterns of mussel beds on tidal flats and tree cover of arid ecosystems. Another pathway to reticulate reefs may be the colonization of reticulate hydrodynamic bedforms by reef builders. Thus, reticulate patterns of Holocene reef-sediment ridges are highly ambiguous indicators of antecedent karst.

Winnowing of poorly-adapted species from local communities causes shifts/declines in species richness, making ecosystems increasingly ecologically depauperate. Low diversity can be associated with marginality of environments, which is increasing as climate change impacts ecosystems globally. This paper demonstrates the demographic mechanisms (size-specific mortality, growth, fertility; and metapopulation connectivity) associated with population-level changes due to thermal stress extremes for five zooxanthellate reef-coral species. Effects vary among species, leading to predictable changes in population size and, consequently, community structure. The Persian/Arabian Gulf (PAG) is an ecologically marginal reef environment with a subset of Indo-Pacific species, plus endemics. Local heating correlates with changes in coral population dynamics and community structure. Recent population dynamics of PAG corals were quantified in two phases (medium disturbed MD 1998-2010 and 2013-17, severely disturbed SD 1996/8, 2010/11/12) with two stable states of declining coral frequency and cover. The strongest changes in life-dynamics, as expressed by transition matrices solved for MD and SD periods were in Acropora downingi and Porites harrisoni, which showed significant partial and whole-colony mortality (termed “shrinkers”). But in Dipsastrea pallida, Platygyra daedalea, Cyphastraea microphthalma the changes to life dynamics were more subtle, with only partial tissue mortality (termed “persisters”). Metapopulation models suggested recovery predominantly in species experiencing partial rather than whole-colony mortality. Increased frequency of disturbance caused progressive reduction in coral size, cover, and population fecundity. Also, the greater the frequency of disturbance, the more larval connectivity is required to maintain the metapopulation. An oceanographic model revealed important local larval retention and connectivity primarily between adjacent populations, suggesting that correlated disturbances across populations will lead to winnowing of species due to colony, tissue, and fertility losses, with resultant insufficient dispersal potential to make up for losses – especially if disturbances increase under climate change. Variable extinction thresholds exists based on the susceptibility of species to disturbance (“shrinkers” versus “persisters”), determining which species will be winnowed from the community. Besides projected changes in coral community and population structure, no species are projected to increase in cover. Increased marginality due to climate change will lead to a net loss of coral cover and novel communities in PAG.

Carbonate precipitation has been a common life strategy for marine organisms for 3.7 billion years, as, therefore, has their construction of reefs. As favored by modern corals, reef-forming organisms have typically adopted a niche in warm, shallow, well-lit, tropical marine waters, where they are capable of building vast carbonate edifices. Because fossil reefs form water aquifers and hydrocarbon reservoirs, considerable effort has been dedicated to understanding their anatomy and morphology. Remote sensing has a particular role to play here. Interpretation of satellite images has done much to reveal the grand spatial and temporal tapestry of tropical reefs. Comparative sedimentology, whereby modern environments are contrasted with the rock record to improve interpretation, has been particularly transformed by observations made from orbit. Satellite mapping has also become a keystone technology to quantify the coral reef crisis—it can be deployed not only directly to quantify the distribution of coral communities, but also indirectly to establish a climatology for their physical environment. This article reviews the application of remote sensing to tropical coralgal reefs in order to communicate how this fast-growing technology might be central to addressing the coral reef crisis and to look ahead at future developments in the science.

Existing marine bioregions covering the Pacific Ocean are conceptualised at spatial scales that are too broad for national marine spatial planning. Here, we developed the first combined oceanic and coastal marine bioregionalisation at national scales, delineating 262 deep-water and 103 reef-associated bioregions across the southwest Pacific. The deep-water bioregions were informed by thirty biophysical environmental variables. For reef-associated environments, records for 806 taxa at 7369 sites were used to predict the probability of observing taxa based on environmental variables. Both deep-water and reef-associated bioregions were defined with cluster analysis applied to the environmental variables and predicted species observation probabilities, respectively to classify areas with high taxonomic similarity. Local experts further refined the delineation of the bioregions at national scales for four countries. This work provides marine bioregions that enable the design of ecologically representative national systems of marine protected areas within offshore and inshore environments in the Pacific.

Satellite imagery and an extensive set of water-depth measurements have been used to map and critically evaluate the magnitude and patterns of bathymetry across Great Bahama Bank. Descriptions of previously collected sediment samples were combined with satellite imagery to map and refine the interpreted distribution of surficial carbonate sediments (depositional facies). Data reveal that 60% of Great Bahama Bank lies in 5 m or less of water. The deep portion occurs mainly in a generally east-west trending area in the southern portion of the platform. The re-evaluation of the facies reveals that Great Bahama Bank is essentially a very grainy platform with muddier accumulations primarily in the lee of Andros Island. This area of Great Bahama Bank also experiences currents related to an excursion of the Florida Current onto the platform top possibly enhancing sediment mud production through the generation of whitings. Sediment equivalents to mudstones, wackestones and mud-rich packstones cover 8%, 5% and 14%, respectively, of the platform top, whereas sediment equivalents to mud-poor packstones, grainstones and rudstones account for 20%, 45% and 3% of the surface area. Boundstones (reefs) were not specifically mapped in this study due to the resolution of the mapping. There is a poor relationship between the occurrence of the depositional texture and water depth, in that the grainier sediment types are abundant across the full range of water depths. The most abrupt lateral facies changes portrayed on the facies maps are observed leeward of islands, areas which also hold the highest diversity in facies type. The majority of the islands on the platform align with the north-west/south-east strike of the platform margin and these islands, in turn, exert control on the shape and orientation of facies belts that develop in proximity to them. For this reason, regions of the platform that contain principal islands host facies belts that align with the principal axis of the platform, whereas for regions lacking islands, the facies belts adopt an east-west trend consistent with prevailing winds and currents. There is a clear trend that the wide southern portion of the platform hosts the most continuous expanses of grain-rich sediments. Journal compilation

article i nfo Coral reefs and their associated accumulations of carbonate sediment adopt particularly complex planform geometries atop the coastal shelf of the Saudi Arabian Red Sea. By assembling 95,000 km 2 of remote sensing data into a GIS, this study aims to relate the morphology of these shallow-water depositional environments to processes that sculpt the coastal zone. A typology that sorts carbonate systems into end-members on the basis of their morphology and relationship to the coastline is developed. The resulting GIS was interrogated for spatial patterns in the distribution and abundance of the end-members. While several depositional morphologies are present throughout the length of the Saudi Arabian Red Sea, the occurrence of others is restricted to narrow re- gionsof latitude.Suchdifferencesindistributioncanbeexplainedinprocess-termsbytherifttectonicsof theRed Sea basin, spatial variability in the presence of sub-seafloor evaporites, and the input of siliciclastic detritus onto the coastal shelf via wadis. This paper provides a foundation for understanding the morphological diversity of shallow-water carbonate systems in both the modern ocean and rock records.

The Bahama Archipelago consists of an arcuate chain of carbonate platforms. Average water depths on the platform-tops, such as the Great Bahama Bank (GBB), are typically 10 m or less, with coral reef-rimmed margins, thick sediment accumulations, and the frequent occurrence of islands. There are, however, exceptions. For example, Cay Sal Bank (CSB), a little studied detached Bahamian carbonate platform with depths ranging from 30 to 7 m, is only slightly deeper than the GBB, but devoid of islands, lacks platform-margin coral reefs and holds little sediment on the platform-top; the platform is incipiently drowned. CSB is interesting as it is conspicuously larger (6000 sq. km) than other incipiently drowned platforms in the region, such as Serranilla Bank (1100 sq. km) and the Cat Island platform (1500 sq. km). Field and remote sensing data are assembled to provide insight into the sedimentology and geomorphology of the CSB. The influence of ocean climate, regional hydrodynamics, and Holocene flooding history are investigated to understand why platform-margin coral reef growth on CSB has been unable to keep pace with Holocene sea-level rise. A decade of regional sea-surface temperature data for the Bahamas report CSB to be situated in the same ocean climate regime as GBB. Temperature cannot explain the platform's different morphologies. The Florida Current has been evoked as a possible reason for the immature development of platform-top processes on the CSB, but numeric modeling suggests its influence to be restricted to the deep flanks of the bank. Further, sediment distribution on CSB, including infill patterns of karst depressions, suggest trade winds (easterlies) to drive platform-top hydrodynamics. By assembling a satellite-derived bathymetry map, it can be shown that CSB flooded earlier and at relatively higher rates of Holocene sea-level rise than its neighboring platforms. Flooding history is identified as the most feasible explanation for the atypical morphology of the CSB. By contrasting the present-day morphology of the CSB and the GBB, the work emphasizes how subtle differences in relative sea-level history can influence the growth of platform-margin coral reefs, features that in turn can conspire to set even closely neighboring carbonate platforms on divergent paths with regard to the development of marine landforms. This insight is relevant to interpreting the morphological diversity of carbonate platforms in the modern ocean and in the rock record.

The lionfish invasion in the Atlantic and Caribbean has proceeded with vigor since their introduction in the 1980s or early 1990s. Lionfish affect recruitment of juvenile fish to reefs due to predation and are found in densities far surpassing that of their native Indo-Pacific. There is concern that the lionfish may become introduced and proliferate (through aquarium releases, transport on floating debris, or passage through the Panama Canal in ship ballast water) in the eastern tropical and north Pacific. This study presents the first known prediction of the potential for establishment of lionfish in the eastern Pacific Ocean. Through computational modeling, we compare and contrast the dynamics of random hypothetical introductions of lionfish into the eastern Pacific and Atlantic Oceans in order to highlight the different potentials for invasion in both basins. Connectivity between discrete regions (precincts) in both the Atlantic and eastern Pacific are examined and settlement densities are calculated to indicate possible locations of establishment of breeding lionfish populations. Our results suggest that lionfish, which are successful invaders in the Atlantic, may not be as successful in the eastern Pacific due to weak mesoscale connectivity which reduces the rapid spread of lionfish larvae.

Carbonate sequence stratigraphy is founded on the principle that changes in relative sea-level are recorded in the rock record by the accumulation of sediment with relative water depth-dependent attributes. While at the scale of a shelf to basin transect, facies clearly arrange by water depth, the relation blurs for depths

Peritidal platforms rimmed by reefs, and raised reefs rimming deep lagoons, are characteristic morphologies of the tropical carbonate factory; their geometry contrasts sharply with the seaward-sloping shelves of siliciclastic margins. The structure has been compared to a bucket-stiff reef rims holding a pile of loose sediment. Remote-sensing data from the Maldive, Chagos and Laccadive archipelagos of the Indian Ocean show that ring reefs with bucket structure are the dominant depositional pattern from patch reefs of tens of meters to archipelagos of hundreds of kilometers in diameter, that is, over more than 4 orders of magnitude in linear size. Over 2.5 orders of magnitude, the bucket structures qualify as statistical fractals, exhibiting self-similar patterns and size distributions following power laws. However, most regional or genetic subsets of the data follow lognormal distributions and small subsets of lagoon reefs exhibit exponential distributions. Seismic data and boreholes in the Maldives indicate that the bucket has been a dominant depositional motif since the Oligocene. Ecological and hydrodynamic studies on modern reefs suggest that the bucket structure is a form of biotic self-organization: the edge position in a reef is favored over the center position because bottom shear is higher and the diffusive boundary layer between reef and water thinner. Thus, the reef edge has easier access to nutrients and is less likely to be buried by sediment. The bucket structure reflects these conditions. Karst processes have accentuated the surface relief of the buckets, particularly in the late Quaternary. © 2013 Springer-Verlag Berlin Heidelberg.

Autogenic dynamics and self-organization in sedimentary systems are increasingly viewed as significant and important processes that drive erosion, sediment transport, and sediment accumulation across the Earth’s surface. These internal dynamics can dramatically modulate the formation of the stratigraphic record, form biologically constructed depositional packages, affect ecological patterning in time and space, and impact aspects of geochemical sedimentation and diagenesis. The notion that autogenic processes are local phenomena of short duration and distance is now recognized as false. Understanding autogenic dynamics in sedimentary systems is thus essential for deciphering the morphodynamics of moderns sedimentary systems, accurately reconstructing Earth history, and predicting the spatial and temporal distribution of sedimentary and paleobiologic features in the stratigraphic record. The thirteen papers in this volume present exciting new ideas and research related to autogenic dynamics and self-organization in sedimentology, stratigraphy, ecology, paleobiology, sedimentary geochemistry, and diagenesis. Five papers summarize the current state of thinking about autogenic processes and products in fluvial-deltaic, eolian, and carbonate depositional systems, and in paleobiologic and geochemical contexts. A second group of papers provide perspectives derived from numerical modeling and laboratory experiments. The final section consists of field studies that explore autogenic processes and autogenically modulated stratigraphy in five case studies covering modern and ancient fluvial, deltaic, and shelf settings. This SP should stimulate further research as to how self-organization might promote a better understanding of the sedimentary record.

As in the tropical Atlantic, Acropora populations in the southern Persian/Arabian Gulf plummeted within two decades after having been ecosystem engineers on most wave-exposed reefs since the Pleistocene. Since 1996/1998 live coral cover in the Gulf declined by over 90% in many areas, primarily due to bleaching and diseases caused by rising temperatures. In the formerly dominant table-coral species A. downingi, population dynamics corresponding to disturbance regimes was quantified in three transition matrices (lower disturbance pre-1996; moderate disturbance from 1998 to 2010 and 2013 to 2017, disturbed in 1996/1998, 2010/11/12, 2017). Increased disturbance frequency and severity caused progressive reduction in coral size, cover, and population fecundity. Small size-classes were bolstered more by partial colony mortality than sexual recruitment. Some large corals had a size refuge and resisted die-back but were also lost with increasing disturbance. Matrix and biophysical larval flow models suggested one metapopulation. Southern, Arabian, populations could be connected to northern, Iranian, populations but this connectivity was lost under assumptions of pelagic larval duration at rising temperatures shortened to a third. Then, the metapopulation disintegrated into isolated populations. Connectivity required to avoid extinctions increased exponentially with disturbance frequency and correlation of disturbances across the metapopulation. Populations became unsustainable at eight disturbances in 15 years, when even highest theoretical recruitment no longer compensated mortality. This lethal disturbance frequency was 3-fold that of the moderately disturbed monitoring period and 4-fold of the preceding low-disturbance period-suggesting ongoing shortening of the disturbance-free period. Observed population collapse and environmental changes in the Gulf suggest that A. downingi is heading toward at least functional extinction mainly due to increasingly frequent temperature-induced mortality events, clearly linked to climate change.

Select lacustrine and marine depositional settings show a spectrum of styles of carbonate deposition and illustrate the types of carbonates, with an emphasis on microbialites and tufa, to be expected in early rift settings. Early rift lake examples examined in this review article are all from East Africa: Lakes Turkana, Bogoria, Natron and Magadi, Manyara, and Tanganyika. Other lake examples include four from the western United States (Great Salt Lake and high lake level Lake Bonneville, Mono Lake and high lake level Russell Lake, Pyramid Lake and high lake level Lake Lahontan, and Searles Lake) and two from Australia (Lakes Clifton and Thetis). Marine basin examples are the Hamelin Pool part of Shark Bay from Australia (marginal marine) and the Red Sea (marine rift). Landsat images and digital elevation models for each example are used to delineate present and past lake-basin margins based on published lake-level elevations, and for some examples, the shorelines representing different lake levels can be compared to evaluate how changes in size, shape, and lake configuration might have impacted carbonate development. The early rift lakes show a range of characteristics to be expected in lacustrine settings during the earliest stages of continental extension and rifting, whereas the Red Sea shows well advanced rifting with marine incursion and reef–skeletal sand development. Collectively, the lacustrine examples show a wide range of sizes, with several of them being large enough that they could produce carbonate deposits of potential economic interest. Three of the areas—Great Salt Lake and high lake level Lake Bonneville, Pyramid Lake and high lake level Lake Lahontan, and the Red Sea—are exceedingly complex in that they illustrate a large degree of potential depositional facies heterogeneity because of their size, irregular pattern, and connectivity of subbasins within the overall basin outline.

Patterns of sedimentation in the Red Sea offer a contemporary analog for carbonate deposition in marine rift settings. Covering 20° of latitude, the sea is sufficiently long to display pronounced climate differences and the clear tropical waters support vigorous coral reef growth and associated production of carbonate sediment. Six focus areas within the Red Sea, each covering exactly 1,600 sq. km, illustrate the variability of spatial patterns in reefal and other carbonates in this rift setting. Five of the focus areas are located on a north–south transect along the western margin of the sea: (1) Gubal Straits (Egypt), (2) Shalatayn (Egypt), (3) Trinkitat (Sudan), (4) Dahlak (Eritrea), and (5) Halib (Eritrea); and one is from the eastern margin: (6) Farasan Banks (Saudi Arabia). Using Landsat imagery, water depth and two marine facies classes, “reefal frameworks” and “sediments,” were mapped. Lumping these two classes define “carbonate bodies” that were analyzed for trends in orientation, relation to local fault networks, and size-frequency distribution. Fault lineaments digitized from the literature are closely related to the orientation of carbonate bodies with areas exceeding 5 sq. km. Smaller bodies do not preferentially align with fault trends. Water depth and the occurrence of reefal frameworks and sediments for the six focus areas are not systematically related. Used as an analog, these data from the contemporary Red Sea may provide insight into the orientation and scale of accumulation of carbonates in subsurface marine rift settings.

Statistical stationarity is a key assumption for the many modeling techniques based on variograms and transiograms used for geostatistical reconstruction of the subsurface. Stationarity expresses the property that the rules of geometry and neighborhood in the model are translation invariant, that is, no directional change in either mean or variance is observed. These criteria are met when the lateral arrangement of lithologic elements into a facies mosaic is isotropic. The balance between isotropy and anisotropy is a defining statistic in the configuration of both real and modeled carbonate landscapes. Even a cursory look at a satellite image of a modern carbonate platform shows that gradients in environment and hydrodynamics cause radical departures from isotropy. Although reef-forming organisms have changed through time, we do not expect that ancient reef systems behaved any differently than today. Hence, significant anisotropy should also be anticipated in the vertical and lateral arrangements of lithologies in the subsurface. To maintain sufficient geologic realism, it is paramount that process-imitating and pattern-replicating models alike be capable of honoring an expected degree of nonstationarity. Despite this need, few studies exist that provide quantitative information to the reach and location of zones of geometric isotropy and anisotropy in carbonate systems, let alone methods with which this property can be assessed. In an effort to close this disjoint, we develop a method for evaluating a modern Pacific depositional system, the Saipan Lagoon, for which we have created a geographic information system stack consisting of mapped facies distributions and a seabed topographic model, both at meter-scale resolution. By developing a lagged spatial metric based on the Markov property of facies transitions, we demonstrate that the degree of anisotropy is influenced by water depth; the shallowest areas (5 m [16 ft]) of the platform interior tend to be anisotropic whereas areas at greater depth are isotropic. This behavior suggests a possible extension to a genetic rule set that could be imparted to subsurface models based on the environment of deposition. This marks an advance in the understanding and, ultimately, handling of geometric nonstationarity in models of carbonate depositional systems.