19 results on '"Samantha Burke"'
Search Results
2. Mapping literature reviews on coral health: A review map, critical appraisal and bibliometric analysis
- Author
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Samantha Burke, Patrice Pottier, Erin L. Macartney, Szymon M. Drobniak, Malgorzata Lagisz, Tracy Ainsworth, and Shinichi Nakagawa
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coral bleaching ,coral disease ,coral recovery ,critical assessment ,literature synthesis ,research mapping ,Environmental sciences ,GE1-350 ,Ecology ,QH540-549.5 - Abstract
Abstract The state of coral reefs has been of great concern, as documented in the growing amount of primary literature. These reports on coral health have accumulated, resulting in reviews of the primary studies (i.e. secondary literature). Recently, such reviews have also accumulated, creating an opportunity to review the secondary literature. Second‐order syntheses (reviews of secondary literature) provide an overview of the field, which can be used to guide future research. Based on our previously published protocol, we compiled peer‐reviewed secondary literature on coral health from Scopus and Web of Science databases. We synthesised 335 secondary literature papers on coral health, 35 of which underwent critical appraisal and 333 of which also underwent bibliometric analysis. The secondary literature consisted primarily of qualitative reviews (78%). Over 80% of papers stated informing coral conservation as the review's purpose. Climate change (50%) and coral resilience (42%) were the most studied topics, and bioerosion was the least (3.6%). Critically appraised papers scored poorly on Collaboration for Environmental Evidence Synthesis Assessment Tool criteria (studies did not meet standards 55% of the time). The authors of the secondary literature were highly interconnected (with 30% of the authors having more than 15 coauthors within our dataset) and included authors from countries with coral reefs (predominantly in Australia and USA; 79% of papers). The secondary literature on coral health had a median Altmetric score of 5.27. We have revealed key gaps in coral health topics for further review (e.g. coral range shifts and microbial biodiversity), particularly when considering conservation policy. Incorporating research in policy could be improved through greater research accessibility and continuing to gather public interest in coral reefs. We further recommend broadening research collaborations to include even more researchers from countries with coral reefs (e.g. Maldives). Finally, the secondary literature on coral health needs better reporting transparency (e.g. publishing code). Our second‐order synthesis is timely, pushing coral health research in a new direction—one which produces research of higher quality, collaboration, and efficiency. As coral reefs decline, we should also aim to rebuild public trust in research and strengthen the evidence base for conservation.
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- 2023
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3. A comprehensive database of amphibian heat tolerance
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Patrice Pottier, Hsien-Yung Lin, Rachel R. Y. Oh, Pietro Pollo, A. Nayelli Rivera-Villanueva, José O. Valdebenito, Yefeng Yang, Tatsuya Amano, Samantha Burke, Szymon M. Drobniak, and Shinichi Nakagawa
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Science - Abstract
Measurement(s) CTmax • Critical thermal maximum • LT50 • Median lethal temperature • Thermal tolerance • Thermal limits Technology Type(s) experimental Factor Type(s) Location • Conservation status • Environmental temperature • Laboratory temperatures • Body size • Ontogeny • Methodological variation Sample Characteristic - Organism Amphibians • Caudata • Amphibia • Frogs • Salamanders • Newts Sample Characteristic - Environment natural environment • laboratory environment Sample Characteristic - Location Global
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- 2022
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4. Mapping literature reviews on coral health: Protocol for a review map, critical appraisal and bibliometric analysis
- Author
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Samantha Burke, Patrice Pottier, Erin L. Macartney, Szymon M. Drobniak, Malgorzata Lagisz, Tracy Ainsworth, and Shinichi Nakagawa
- Subjects
coral bleaching ,coral disease ,coral recovery ,coral reefs ,critical assessment ,research weaving ,Environmental sciences ,GE1-350 ,Ecology ,QH540-549.5 - Abstract
Abstract The health of coral reef ecosystems is declining. As research examining this decline has grown, review articles (secondary literature) have emerged. Secondary literature can include narrative reviews, systematic reviews, and bibliometric analyses. Synthesizing secondary literature can influence research directions, as syntheses visualize both the current state of knowledge and trends in research. Therefore, we propose to use the combination of bibliometric mapping and systematic mapping techniques to synthesize the secondary literature on coral health and coral reef decline. We will examine secondary literature on coral health published in peer‐reviewed journals and indexed in Scopus or Web of Science databases. After screening the title, abstract, and keywords of each paper, we will extract information that encompasses the type and purpose of the review, the identified factors affecting coral health, and the health‐related outcomes on coral reefs. We will also conduct a critical appraisal using the Collaboration for Environmental Evidence Synthesis Assessment Tool (CEESAT) criteria for papers that are self‐reported to be systematic reviews. We will also extract bibliometric data to identify author affiliations, collaboration networks, and journals. We will communicate our results from systematic and bibliometric mapping using visualizations and tabulations. Our systematic map aims to reveal gaps and clusters of topics in review articles on coral health. These findings can guide future research into coral health in both primary and secondary literature. Our critical appraisal will evaluate the robustness of systematic reviews, informing researchers on how to identify and conduct high‐quality reviews. Our bibliometric map will uncover the extent and connectivity of researchers synthesizing evidence on coral health, highlighting the diversity (or lack thereof) of those engaging in coral health research.
- Published
- 2022
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5. Developmental plasticity in thermal tolerance: Ontogenetic variation, persistence, and future directions
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Patrice Pottier, Samantha Burke, Rose Y. Zhang, Daniel W. A. Noble, Lisa E. Schwanz, Szymon M. Drobniak, and Shinichi Nakagawa
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Hot Temperature ,critical thermal limits ,Acclimatization ,Climate Change ,Temperature ,heat tolerance ,persistence ,acclimation ,phenotypic plasticity ,climate vulnerability ,reversibility ,systematic review ,ontogenetic variation ,Plastics ,$CT_{max}$ ,Ecology, Evolution, Behavior and Systematics - Abstract
Understanding the factors affecting thermal tolerance is crucial for predicting the impact climate change will have on ectotherms. However, the role developmental plasticity plays in allowing populations to cope with thermal extremes is poorly understood. Here, we meta-analyse how thermal tolerance is initially and persistently impacted by early (embryonic and juvenile) thermal environments by using data from 150 experimental studies on 138 ectothermic species. Thermal tolerance only increased by 0.13°C per 1°C change in developmental temperature and substantial variation in plasticity (~36%) was the result of shared evolutionary history and species ecology. Aquatic ectotherms were more than three times as plastic as terrestrial ectotherms. Notably, embryos expressed weaker but more heterogenous plasticity than older life stages, with numerous responses appearing as non-adaptive. While developmental temperatures did not have persistent effects on thermal tolerance overall, persistent effects were vastly under-studied, and their direction and magnitude varied with ontogeny. Embryonic stages may represent a critical window of vulnerability to changing environments and we urge researchers to consider early life stages when assessing the climate vulnerability of ectotherms. Overall, our synthesis suggests that developmental changes in thermal tolerance rarely reach levels of perfect compensation and may provide limited benefit in changing environments.
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- 2022
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6. The impact of rising temperatures on the prevalence of coral diseases and its predictability: a global meta-analysis
- Author
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Samantha Burke, Patrice Pottier, Malgorzata Lagisz, Erin Macartney, Tracy Ainsworth, Szymon Drobniak, and Shinichi Nakagawa
- Abstract
Coral reefs are under threat from disease as climate change alters environmental conditions. Rising temperatures exacerbate coral disease, but this relationship is likely complex as other factors also influence coral disease prevalence. To better understand this relationship, we meta-analytically examined 108 studies for changes in global coral disease over time alongside temperature, expressed using average summer sea surface temperature (SST) and cumulative heat stress as weekly sea surface temperature anomalies (WSSTAs). We found both rising average summer SST and WSSTA were associated with global increases in the mean and variability in coral disease prevalence. We showed global coral disease prevalence reached 9.92% compared to 3.16% in 1992, and the effect of ‘year’ became more stable (i.e., has lower variance), contrasting to the effects of the two temperature stressors. Regional patterns diverged over time and differed in response to average summer SST. Our model predicted that, under the same trajectory, 76.8% of corals would be diseased globally by 2100, even assuming moderate average summer SST and WSSTA. These results highlight the need for urgent action to mitigate coral disease. Mitigating the impact of rising ocean temperatures on coral disease alone is a complex challenge requiring global discussion and further study.
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- 2023
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7. Quantifying between-individual variation using high-throughput phenotyping of behavioural traits in the fruit fly (Drosophila melanogaster)
- Author
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Erin Macartney, Patrice Pottier, Samantha Burke, Szymon Drobniak, and Shinichi Nakagawa
- Abstract
Behavioural phenotyping is often time and labour-intensive, which can come at a cost to sample size and statistical precision. This is particularly a concern given that behaviours are often highly variable within and between individuals, so naturally requires a larger sample size. Drosophila melanogaster is a common model system in many research fields, and behavioural observations are frequently required. While D. melanogaster has a rapid lifecycle that enables large numbers of flies to be reared for experiments, they are still subject to methodological bottlenecks for behavioural observations. Additionally, their small and delicate bodies make it difficult to observe certain behaviours in real-time, for example, in movement tracking or when performing repeated assays on the same individuals. Here, we present a method, pilot data, custom data processing and analysis scripts for high-throughput behavioural phenotyping in D. melanogaster, as well as general remarks for future studies. We used automatic tracking units to measure three behaviours in the same individuals: locomotor activity, exploratory behaviour in a Y-maze, and habituation to a startle response stimulus. We then examined between-individual variation and trait correlations using our pilot data. Through this, we show that these behaviours are amenable to high-throughput automated tracking, with locomotor activity generating the most straightforward and high-quality data. These methods can be used to free up time and labour to allocate to increasing sample sizes and can be used to address a range of biological questions in ecology, evolution, and beyond.
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- 2022
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8. Author response for 'Mapping literature reviews on coral health: Protocol for a review map, critical appraisal and bibliometric analysis'
- Author
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null Samantha Burke, null Patrice Pottier, null Erin L. Macartney, null Szymon M. Drobniak, null Malgorzata Lagisz, null Tracy Ainsworth, and null Shinichi Nakagawa
- Published
- 2022
- Full Text
- View/download PDF
9. Author response for 'Developmental plasticity in thermal tolerance: Ontogenetic variation, persistence, and future directions'
- Author
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null Patrice Pottier, null Samantha Burke, null Rose Y. Zhang, null Daniel W. A. Noble, null Lisa E. Schwanz, null Szymon M. Drobniak, and null Shinichi Nakagawa
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- 2022
- Full Text
- View/download PDF
10. 44 Swindon heart attack program to evaluate and improve timing of angiography in nstemi (shape-it nstemi)
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Tom Hyde, Jon Taylor, Lucy Marquiss, Agnieszka Kopanska, Tessa Cobb, Andrea Plumb, Emmakate Kelland, Monica Rees, Stephanie Taylor, Susanne Pidduck, Teresa Darmody, Karen Darby, Chirag Gurung, Trish O’Connell, Mark Walker, Paul Charlton, Samantha Burke, Edward Barnes, Alex Sharp, Karen Braid, Sarah O’Brien, and Paul Frobisher
- Published
- 2022
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11. Meta-analysis of overall survival and postoperative neurologic deficits after resection or biopsy of butterfly glioblastoma
- Author
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Mohamed AR Soliman, Asham Khan, Shady Azmy, Olivia Gilbert, Slah Khan, Ryan Goliber, Eric J Szczecinski, Hamza Durrani, Samantha Burke, Amany A Salem, Dorota Lubanska, Moleca M Ghannam, Ryan M Hess, Jaims Lim, Jeffrey P Mullin, Jason M Davies, John Pollina, Kenneth V Snyder, Adnan H Siddiqui, Elad I Levy, Robert J Plunkett, and Robert A Fenstermaker
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Treatment Outcome ,Brain Neoplasms ,Biopsy ,Humans ,Surgery ,Neurology (clinical) ,General Medicine ,Glioma ,Glioblastoma - Abstract
Butterfly glioblastoma (bGBM) is a grade 4 glioma with a poor prognosis. Surgical treatment of these cancers has been reviewed in the literature with some recent studies supporting resection as a safe and effective treatment instead of biopsy and adjuvant therapy. This meta-analysis was designed to determine whether there are significant differences in overall survival (OS) and postoperative neurologic deficits (motor, speech, and cranial nerve) following intervention in patients who underwent tumor resection as part of their treatment, compared to patients who underwent biopsy without surgical resection. A literature search was conducted using PubMed (National Library of Medicine) and Embase (Elsevier) to identify articles from each database's earliest records to May 25, 2021, that directly compared the outcomes of biopsy and resection in bGBM patients and met predetermined inclusion criteria. A meta-analysis was conducted to compare the effects of the two management strategies on OS and postoperative neurologic deficits. Six articles met our study inclusion criteria. OS was found to be significantly longer for the resection group at 6 months (odds ratio [OR] 2.94, 95% confidence interval [CI] 1.23-7.05) and 12 months (OR 3.75, 95% CI 1.10-12.76) than for the biopsy group. No statistically significant differences were found in OS at 18 and 24 months. Resection was associated with an increased rate of postoperative neurologic deficit (OR 2.05, 95% CI 1.02-4.09). Resection offers greater OS up to 1 year postintervention than biopsy alone; however, this comes at the cost of higher rates of postoperative neurologic deficits.
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- 2022
12. Developmental plasticity in thermal tolerance is insufficient to compensate for rising temperatures: a meta-analysis
- Author
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Patrice Pottier, Samantha Burke, Rose Zhang, Daniel Noble, Lisa Schwanz, Szymon Drobniak, and Shinichi Nakagawa
- Abstract
Understanding the factors affecting thermal tolerance is crucial for predicting the impact climate change will have on ectotherms. However, the role developmental plasticity plays in allowing populations to cope with thermal extremes is poorly understood. Here, we meta-analyse how thermal tolerance is acutely and persistently impacted by early thermal environments by using data from 150 experimental studies on 138 ectothermic species. Thermal tolerance only increased by 0.13°C per 1°C change in developmental temperature and substantial variation in plasticity (~36%) was the result of shared evolutionary history and species ecology. Aquatic ectotherms were more than three times as plastic as terrestrial ectotherms. Notably, embryos expressed weaker but more heterogenous plasticity than older life stages, with numerous responses appearing as non-adaptive. While we did not find universal evidence for developmental temperatures to have persistent effects on thermal tolerance, persistent effects were vastly under-studied, and their direction and magnitude varied with ontogeny. Embryonic stages may represent a critical window of vulnerability to changing environments and we urge researchers to consider early life stages when assessing the climate vulnerability of ectotherms. Overall, our synthesis suggests that developmental changes in thermal tolerance will rarely reach levels of perfect compensation and buffer ectotherms from rising temperatures.
- Published
- 2022
- Full Text
- View/download PDF
13. Meta-analytic approaches and effect sizes to account for ‘nuisance heterogeneity’ in comparative physiology
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Daniel W. A. Noble, Patrice Pottier, Malgorzata Lagisz, Samantha Burke, Szymon M. Drobniak, Rose E. O'Dea, and Shinichi Nakagawa
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Models, Statistical ,sampling error ,Physiology ,standardised mean difference ,multilevel meta-analysis ,Aquatic Science ,‘apples and oranges’ ,Insect Science ,quantitative synthesis ,Animal Science and Zoology ,Physiology, Comparative ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,log Response ratio - Abstract
Meta-analysis is a powerful tool used to generate quantitatively informed answers to pressing global challenges. By distilling data from broad sets of research designs and study systems into standardised effect sizes, meta-analyses provide physiologists with opportunities to estimate overall effect sizes and understand the drivers of effect variability. Despite this ambition, research designs in the field of comparative physiology can appear, at the outset, as being vastly different to each other because of ‘nuisance heterogeneity’ (e.g. different temperatures or treatment dosages used across studies). Methodological differences across studies have led many to believe that meta-analysis is an exercise in comparing ‘apples with oranges’. Here, we dispel this myth by showing how standardised effect sizes can be used in conjunction with multilevel meta-regression models to both account for the factors driving differences across studies and make them more comparable. We assess the prevalence of nuisance heterogeneity in the comparative physiology literature – showing it is common and often not accounted for in analyses. We then formalise effect size measures (e.g. the temperature coefficient, Q10) that provide comparative physiologists with a means to remove nuisance heterogeneity without the need to resort to more complex statistical models that may be harder to interpret. We also describe more general approaches that can be applied to a variety of different contexts to derive new effect sizes and sampling variances, opening up new possibilities for quantitative synthesis. By using effect sizes that account for components of effect heterogeneity, in combination with existing meta-analytic models, comparative physiologists can explore exciting new questions while making results from large-scale data sets more accessible, comparable and widely interpretable.
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- 2022
14. Methodological inconsistencies define thermal bottlenecks in fish life cycle : a comment on Dahlke et al. 2020
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Patrice Pottier, Samantha Burke, Szymon Drobniak, and Shinichi Nakagawa
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bepress|Life Sciences|Ecology and Evolutionary Biology|Terrestrial and Aquatic Ecology ,climate vulnerability ,bepress|Life Sciences ,climate change ,comparability ,comparative physiology ,bepress|Life Sciences|Ecology and Evolutionary Biology ,Ecology, Evolution, Behavior and Systematics ,thermal tolerance - Abstract
Comparative analyses require researchers to not only ensure data quality, but also to make prudent and justifiable assumptions about data comparability. A failure to do so can lead to unreliable conclusions. As a case in point, we comment on a study that estimated the vulnerability of the world’s fish species to climate change using comparison between life stages (Dahlke et al. 2020, Science 369: 65-70). We highlight concerns with the data quality and argue that the metrics used to investigate ontogenetic differences in thermal tolerance were incomparable and confounded. Therefore, we provide caution when interpreting their results in the light of climate vulnerability. We suggest potential remedies and recommend thermal tolerance metrics that may be comparable across life stages. We also encourage the creation of guidelines to design, report, and assess comparative analyses to increase their reliability and reproducibility.
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- 2022
15. How Much is it Going to Cost: An Approach to Decision Making
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Samantha Burke, Jean Malafronte, and Steven Pugsley
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General Engineering - Published
- 2017
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16. Implicit theories of creativity are differentially categorized by perspective and exemplar domain
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Richard W. Hass and Samantha Burke
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media_common.quotation_subject ,05 social sciences ,Perspective (graphical) ,050109 social psychology ,Creativity ,Domain specificity ,050105 experimental psychology ,Implicit learning ,Education ,Domain (software engineering) ,Social cognition ,Similarity (psychology) ,0501 psychology and cognitive sciences ,Product (category theory) ,Psychology ,Social psychology ,Cognitive psychology ,media_common - Abstract
We propose that thoughts about one's own creativity are related to implicit views about the similarity of one’s traits to those of creative exemplars. In this study, 298 undergraduates were instructed either to imagine an example of an innovative product or to imagine themselves creating a product in one of three domains (art, music, or gadgetry). Following the manipulation, participants rated the fitness of a list of creative traits relative to their first or third person creative exemplar. Fitness ratings were generally higher for third person exemplars than for first person exemplars. Though ratings also varied by domain, there was a significant interaction between perspective and domain, such that first-person ratings (i.e., self ratings) did not vary by exemplar domain, while third-person ratings (i.e., an external exemplar) did vary by domain. Implications and future directions for the study of implicit theories and creative performance and achievement are discussed.
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- 2016
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17. Client Perspectives on Using Technology-guided Activity-based Upper Extremity Interventions for Spinal Cord Injury Rehabilitation
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Ralph J. Marino, Gabrielle Kains, Cecilia Pivarunas, Susan V. Duff, Samantha Burke, and Namrata Grampurohit
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medicine.medical_specialty ,Spinal cord injury rehabilitation ,Physical medicine and rehabilitation ,business.industry ,Rehabilitation ,Psychological intervention ,Medicine ,Physical Therapy, Sports Therapy and Rehabilitation ,business - Published
- 2020
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18. A simplified, desktop approach to an asset replacement evaluation for capital planning purposes
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Samantha Burke, Juliana Appiah, Jean Malafronte, and Steven Pugsley
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Finance ,Capital budgeting ,business.industry ,General Engineering ,Business ,Asset (economics) - Published
- 2016
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19. Dasatinib inhibits TGFβ-induced myofibroblast differentiation through Src-SRF Pathway
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Robert Newsome, Jessica Ujjin, Maha Abdalla, Erin Gurley, Samantha Burke, LeeAnn Thompson, and Payaningal R. Somanath
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Serum Response Factor ,Pulmonary Fibrosis ,Cellular differentiation ,Dasatinib ,Article ,Cell Line ,Mice ,Transforming Growth Factor beta ,hemic and lymphatic diseases ,Serum response factor ,medicine ,Animals ,Humans ,Myofibroblasts ,Lung ,Pharmacology ,biology ,Chemistry ,Cell Differentiation ,Transforming growth factor beta ,Actins ,Fibronectins ,src-Family Kinases ,Gene Expression Regulation ,Cancer research ,biology.protein ,Signal transduction ,Myofibroblast ,Signal Transduction ,Transforming growth factor ,Proto-oncogene tyrosine-protein kinase Src ,medicine.drug - Abstract
Persistent myofibroblast differentiation is a hallmark of fibrotic diseases. Myofibroblasts are characterized by de novo expression of alpha smooth muscle actin (αSMA) and excess fibronectin assembly. Recent studies provide conflicting reports on the effects of tyrosine kinase inhibitor dasatinib on myofibroblast differentiation and fibrosis. Also, it is not fully understood whether dasatinib modulates myofibroblast differentiation by targeting Src kinase. Herein, we investigated the effect of dasatinib on cSrc and transforming growth factor-β (TGFβ)-induced myofibroblast differentiation in vitro. Our results indicated that selective Src kinase inhibition using PP2 mimicked the effect of dasatinib in attenuating myofibroblast differentiation as evident by blunted αSMA expression and modest, but significant inhibition of fibronectin assembly in both NIH 3T3 and fibrotic human lung fibroblasts. Mechanistically, our data showed that dasatinib modulates αSMA synthesis through Src kinase-mediated modulation of serum response factor expression. Collectively, our results demonstrate that dasatinib modulates myofibroblast differentiation through Src-SRF pathway. Thus, dasatinib could potentially be a therapeutic option in fibrotic diseases.
- Published
- 2015
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