27 results on '"Salvucci, S."'
Search Results
2. P159 Severe infections in SLE patients: a descriptive analysis from a single centre
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Montozzi, Giorgia, primary, Salvucci, S, additional, Santangeli, R, additional, Gamba, L, additional, Cocco, C, additional, Fioretti, P, additional, Curina, L, additional, Manfredi, Lucia, additional, and Moroncini, G, additional
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- 2024
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3. Technical Report of the NAEP Mathematics Assessment in Puerto Rico: Focus on Statistical Issues. NCES 2007-462
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National Center for Education Statistics (ED), Washington, DC., Baxter, G. P., Ahmed, S., Sikali, E., Waits, T., Sloan, M., and Salvucci, S.
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In 2003, a trial National Assessment of Educational Progress (NAEP) mathematics assessment was administered in Spanish to public school students at grades 4 and 8 in Puerto Rico. Based on preliminary analyses of the 2003 data, changes were made in administration and translation procedures for the 2005 NAEP administration in Puerto Rico. This report describes the content and administration of the trial NAEP mathematics assessments in Puerto Rico in 2003 and 2005, problems with item misfit in the 2003 data, results of a special validity analysis, and plans to integrate Puerto Rico into the national sample in future administrations. This report is one of a series of three on the administration and results of the 2003 and 2005 trial NAEP mathematics assessments in Puerto Rico: (1) "Mathematics 2003 and 2005 Performance in Puerto Rico: Highlights" [ED495982]; and (2) "Mathematics 2005 Performance in Puerto Rico: Focus on the Content Areas" [ED495981]. This, the third report, focuses on the technical considerations of the trial assessments and plans to include Puerto Rico as part of the national sample in future administrations. (Contains 20 figures and 3 tables.)
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- 2007
4. The Nation's Report Card [TM]: Mathematics 2003 and 2005: Performance in Puerto Rico. Highlights. NCES 2007--459
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National Center for Education Statistics (ED), Washington, DC., Baxter, G.P, Bleeker, M.M, Waits, T.L, and Salvucci, S.
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This report presents highlights of the results for fourth-and eighth-grade students in Puerto Rico for the 2003 and 2005 National Assessment of Educational Progress (NAEP) in mathematics. The NAEP mathematics assessment was administered to public school students in Puerto Rico for the first time in 2003. Although NAEP had previously administered some of the assessment in Spanish to students who required accommodations, this was the first time an entire NAEP administration was in a language other than English. The NAEP mathematics assessment was administered again to public school students in both fourth-and eighth-grades in Puerto Rico in 2005. Because modifications were made for the 2005 administration in Puerto Rico, NAEP mathematics scores should not be compared between the two years. Results are reported as average scores and as the percentages of students performing at or above three achievement levels: Basic, Proficient, and Advanced. Scores are also reported at different percentiles (showing performance for lower-, middle-, and higher-performing students) and by subject subscales (showing performance in specific content areas). Performance of students in Puerto Rico is compared to all public school students in the nation and to public school students from low-income families in the nation. In all cases, students in Puerto Rico performed lower than the nation and low-income students. The report also includes sample assessment questions in mathematics, and technical notes provide information about sampling, school and student participation rates, use of accommodations, statistical significance quality of 2003 results, and changes in 2005 administration. (Contains 8 tables and 16 figures.)
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- 2007
5. PO.3.55 Estimation of cardiovascular risk among SLE patients: analysis from a monocentric cohort
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Santangeli, R, primary, Montozzi, G, additional, Gamba, L, additional, Salvucci, S, additional, Manfredi, L, additional, and Moroncini, G, additional
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- 2022
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6. PO.6.123 A rapid decalage of immunosuppressive therapy in a young woman with systemic lupus erythematosus
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Montozzi, G, primary, Gamba, L, additional, Santangeli, R, additional, Salvucci, S, additional, Manfredi, L, additional, and Moroncini, G, additional
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- 2022
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7. PO.3.69 A case of late onset of primary antiphospholipid syndrome
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Salvucci, S, primary, Manfredi, L, additional, Gamba, L, additional, Montozzi, G, additional, Santangeli, R, additional, and Moroncini, G, additional
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- 2022
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8. PO.7.151 The relationship between health-related quality of life and disease activity in sle patients
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Salvucci, S, primary, Santangeli, R, additional, Montozzi, G, additional, Gamba, L, additional, Cocco, C, additional, Fioretti, P, additional, Manfredi, L, additional, and Moroncini, G, additional
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- 2022
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9. AB1514 AN UNUSUAL ASSOCIATION BETWEEN THROMBOTIC THROMBOCYTOPENIC PURPURA AND PRIMARY ANTIPHOSPHOLIPID SYNDROME
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Santangeli, R., primary, Montozzi, G., additional, Gamba, L., additional, Salvucci, S., additional, Manfredi, L., additional, and Moroncini, G., additional
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- 2022
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10. AB0427 RENAL INVOLVEMENT IN SYSTEMIC LUPUS ERYTHEMATOSUS: A DIFFICULT-TO-TREAT CLINICAL CASE
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Santangeli, R., primary, Salvucci, S., additional, Gamba, L., additional, Montozzi, G., additional, Manfredi, L., additional, and Moroncini, G., additional
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- 2022
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11. Characterization of eggs from Italian chicken breeds: preliminary results
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Salvucci, S., Franzoni, A., Castillo, A., Benvenuti, Mn., Russo, C., Cecchi, F., Cerolini, S., Buccioni, A., Castellini, C., Iaffaldano, N., Cassandro, M., Schiavone, A., and Marzoni, M
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- 2022
12. Development of a novel epitope-based diagnostic assay for systemic sclerosis
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Moroncini, G, Mozzicafreddo, M, Cuccioloni, M, Grieco, A, Paolini, C, Tonnini, C, Avvedimento, Salvucci, S, Funaro, A, and Gabrielli, A
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- 2017
13. Combined antiretroviral therapy reduces hyperimmunoglobulinemia in HIV-1 infected children
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Chiappini, E, Galli, L, Tovo, PA, Gabiano, C, de Martino, M, Osimani, P, Cordiali, R, De Mattia, D, Manzioma, M, DI BARI, DANIELA COLOMBA, Ruggeri, M, Masi, M, Miniaci, A, Specchia, F, Ciccia, M, Lanari, M, Baldi, F, Battisti, L, Schumacher, R, Duse, M, Fiorino, C, Dessi, C, Pintor, C, Dedoni, M, Fenu, ML, CAVALLINI, RAFFAELLA, D'ANASTASIO, ELISABETTA, Merolla, F, Sticca, M, Pomero, G, Bezzi, T, Fiumana, E, Paganelli, S, Vierucci, A, Vitucci, P, CECCHI, MARIA TERESA, Cosso, D, Timitilli, A, Stronati, M, Plebani, A, PINZANI, ROBERTO, VIGANO', ALDO, Giacomet, V, Bianchi, R, SALVINI, FRANCESCO, Zuccotti, GV, Giovannini, M, Ferraris, G, Lipreri, R, Moretti, C, Cellini, M, Cano, MC, Palazzi, G, Guarino, A, Bruzzese, E, DE MARCO, GIUSEPPINA, Tarallo, L, TANCREDI, FERNANDO ANTONIO, Giaquinto, C, D'Elia, R, Rampon, O, Nogare, EDR, SANFILIPPO, ALESSIA, Romano, A, Saitta, M, Dodi, I, Barone, A, Maccabruni, A, Consolini, R, Legitimo, A, Magnani, C, Falconieri, P, Fundaro, C, Genovese, O, Salvucci, S, Casadei, AM, Gattinara, GC, Bernardi, S, PALMA, PASQUALE, Anzidei, G, Anzidei, M, Cerilli, S, Catania, S, Ajassa, C, Ganau, A, Cristiano, L, Mazza, A, Di Palma, A, Garetto, S, Riva, C, Scolfaro, C, Portelli, V, Rabusin, M, Pellegatta, A, Molesini, M, Chiappini, E, Galli, L, Tovo, PA, Gabiano, C, de Martino, M, Osimani, P, Cordiali, R, De Mattia, D, Manzioma, M, Di Bari, C, Ruggeri, M, Masi, M, Miniaci, A, Specchia, F, Ciccia, M, Lanari, M, Baldi, F, Battisti, L, Schumacher, R, Duse, M, Fiorino, C, Dessi, C, Pintor, C, Dedoni, M, Fenu, ML, Cavallini, R, Anastasio, E, Merolla, F, Sticca, M, Pomero, G, Bezzi, T, Fiumana, E, Paganelli, S, Vierucci, A, Vitucci, P, Cecchi, MT, Cosso, D, Timitilli, A, Stronati, M, Plebani, A, Pinzani, R, Vigano, A, Giacomet, V, Bianchi, R, Salvini, F, Zuccotti, GV, Giovannini, M, Ferraris, G, Lipreri, R, Moretti, C, Cellini, M, Cano, MC, Palazzi, G, Guarino, A, Bruzzese, E, De Marco, G, Tarallo, L, Tancredi, F, Giaquinto, C, D'Elia, R, Rampon, O, Nogare, EDR, Sanfilippo, A, Romano, A, Saitta, M, Dodi, I, Barone, A, Maccabruni, A, Consolini, R, Legitimo, A, Magnani, C, Falconieri, P, Fundaro, C, Genovese, O, Salvucci, S, Casadei, AM, Gattinara, GC, Bernardi, S, Palma, P, Anzidei, G, Anzidei, M, Cerilli, S, Catania, S, Ajassa, C, Ganau, A, Cristiano, L, Mazza, A, Di Palma, A, Garetto, S, Riva, C, Scolfaro, C, Portelli, V, Rabusin, M, Pellegatta, A, and Molesini, M
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Adult ,medicine.medical_specialty ,Adolescent ,immunogiobulins ,Immunology ,immunoglobulins ,combined antiretroviral therapy ,Human immunodeficiency virus (HIV) ,HIV Infections ,medicine.disease_cause ,Gastroenterology ,children ,Hypergammaglobulinemia ,Internal medicine ,medicine ,Humans ,Immunology and Allergy ,Child ,Therapeutic regimen ,biology ,business.industry ,Immunoglobulins, Intravenous ,Infant ,Normal population ,hiv-1 infection ,Settore MED/38 ,Antiretroviral therapy ,HIV Reverse Transcriptase ,Infectious Diseases ,Child, Preschool ,Intravenous IG ,HIV-1 ,biology.protein ,HIV-1 infection ,Drug Evaluation ,Reverse Transcriptase Inhibitors ,Drug Therapy, Combination ,Antibody ,business ,Viral load - Abstract
Objective: To evaluate the effect of combined antiretroviral therapy on serum immunoglobulin (Ig) levels in HIV-1 perinatally infected children.Methods: Data from 1250 children recorded by the Italian Register for HIV Infection in Children from 1985 to 2002 were analysed. Since Ig levels physiologically vary with age, differences at different age periods were evaluated as differences in z-scores calculated using means and standard deviations of normal population for each age period. Combined antiretroviral therapy has become widespread in Italy since 1996, thus differences in Ig z-scores between the periods 1985-1995 and 1996-2002 were analysed. Data according to type of therapeutic regimen were also analysed.Results: Between the two periods 1985-1995 and 1996-2002, significant (P < 0.0001) decreases in IgG (6.29 +/- 4.72 versus 4.44 +/- 4.33), IgM (9.25 +/- 13.32 versus 5.61 +/- 7.93), and IgA (10.25 +/- 15.68 versus 6.48 +/- 11.56) z-scores, together with a parallel significant (P < 0.0001) increase in CD4 T-lymphocyte percentages, were found. These decreases were confirmed regardless of whether the children were receiving intravenous Ig or not. Ig z-scores were significantly higher in children receiving mono-therapy than in those receiving double-combined therapy (IgG, P < 0.0001; IgM, P = 0.003; IgA, P = 0.031) and in the latter children than in those receiving three or more drugs (P < 0.0001 for all z-scores). Ig z-scores correlated inversely with CD4 T lymphocyte percentages and, directly, with viral loads.Conclusions: Our data show that in HIV-1 infected children combined antiretroviral therapy leads to reduction of hyperimmunoglobulinemia which parallels restoration of CD4 T-lymphocyte percentage and viral load decrease, which it turn probably reflects improved B-lymphocyte functions.(C) 2004 Lippincott Williams Wilkins.
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- 2004
14. OP0031 Development of a novel epitope-based diagnostic assay for systemic sclerosis
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Moroncini, G, primary, Mozzicafreddo, M, additional, Cuccioloni, M, additional, Grieco, A, additional, Paolini, C, additional, Tonnini, C, additional, Salvucci, S, additional, Avvedimento, E, additional, Funaro, A, additional, and Gabrielli, A, additional
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- 2017
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15. Dynamics of shade avoidance response in Arabidopsis
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Sessa G (1), Ciolfi A (1), Possenti M (2), Salvucci S (1), Carabelli M (1), Morelli G (2), and Ruberti I (1)
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fungi - Abstract
The success of competitive interactions between plants determines the chance of survival of individuals and eventually of whole plant species. Shade-tolerant plants have adapted their photosynthesis to function optimally under low light conditions. These plants are therefore capable of long-term survival under a canopy shade. In contrast, shade-avoiding plants adapt their growth to perceive maximum sunlight and therefore rapidly dominate gaps in a canopy. Daylight contains roughly equal proportions of red (R) and far-red (FR) light, but within vegetation that ratio is lowered as a result of R absorption by photosynthetic pigments. This light quality change is perceived through the phytochrome system as an unambiguous signal of the proximity of neighbours resulting in the shade avoidance response. This adaptive reaction is achieved by a set of responses including enhanced internode and petiole extension growth, increased apical dominance, retarded leaf development, and an acceleration of flowering. Genomic and genetic analyses by a number of laboratories including ours have identified several low R/FR regulated genes and key regulators involved in the shade avoidance response. However, very little is known about the cascade of events triggered by low R/FR that give rise to full activation of the response and eventually lead to adaptation to an unfavourable light environment. By combining genome-wide experimental and computational analyses in wild type and genetically altered plants exposed to low R/FR light for different times, we identified novel regulatory circuits controlling plant adaptation to canopy shade.
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- 2012
16. Behavioral dynamic modelling of fast responses: the Escherichia coli SOS system as a case study
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Salvucci, S., primary, Farina, L., additional, Morelli, G., additional, and Ruberti, I., additional
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- 2010
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17. Methadone dosage and retention: an examination of the 60 mg/day threshold.
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Brady TM, Salvucci S, Sverdlov LS, Male A, Kyeyune H, Sikali E, DeSale S, and Yu P
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A National Institutes of Health (NIH) expert panel has mentioned a daily methadone dose of at least 60 mg as a best practice in methadone maintenance. The focus of this research is to estimate the percentage of outpatient methadone clients receiving this level of methadone and examine the association between treatment retention and level of methadone dosage as recommended by the NIH expert panel. A sample of 428 methadone clients discharged from methadone treatment facilities from the Alcohol and Drug Services Study (ADSS) was used, representing 109,973 methadone clients nationally. It was estimated that more than two-thirds of methadone clients nationally were receiving below 60 mg/day. While controlling for a number of client and organizational variables, a daily methadone dose of 60 mg/day or above was found to be associated with longer retention in treatment. Exploring factors affecting the utilization of the recommended daily methadone dose remains an important issue in effective delivery of methadone treatment. [ABSTRACT FROM AUTHOR]
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- 2005
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18. Long-term outcome of children born to mothers in a methadone maintenance program during pregnancy
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Fundarò, C., Genovese, O., Rendeli, C., Pietro FERRARA, and Salvucci, S.
19. Mycobacterium tuberculosis inhibitors: an updated patent review (2021-present).
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Benedetta S, Vallini F, Guida M, Tammaro C, Biava M, and Poce G
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Introduction: Tuberculosis (TB) remains a major global health issue, causing around 10 million new cases and 1.3 million deaths in 2022. The challenge is compounded by multidrug-resistant (MDR) and extensively drug-resistant (XDR) TB strains, and co-infection with HIV., Areas Covered: The present review examines significant patent literature on TB chemotherapeutics from September 2021 to the present using the following databases, reaxys, google patent and espacenet. Only patents reporting compounds with a minimum inhibitory concentration (MIC) on whole Mycobacterium tuberculosis cells of ≤5 µM were selected for review., Expert Opinion: The fight against TB is advancing with the development of promising new compounds due to the challenge of drug-resistant strains. Notable among those reviewed in this paper are the benzothiazinones, showing high efficacy against both drug-sensitive and resistant TB strains. Additionally, Q203 analogues, demonstrate strong antitubercular activity, good microsomal stability, and favorable safety profiles. Finally, LysRS inhibitors also show significant promise in vivo models. These advancements underscore the importance of novel targets and innovative strategies in developing effective, resistance-resistant TB treatments.
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- 2024
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20. Occurrence of Antimicrobial-Resistant Enterococcus spp. in Healthy Chickens Never Exposed to Antimicrobial Agents in Central Italy.
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Cagnoli G, Di Paolo A, Bertelloni F, Salvucci S, Buccioni A, Marzoni Fecia di Cossato M, and Ebani VV
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Enterococci are part of the natural flora of the gastrointestinal tract of mammals, including humans, birds and invertebrates. They can cause infection, mainly among hospitalized patients, as well as acquire and transfer antimicrobial resistance genes. The present study allowed the isolation of 98 Enterococcus (73.47% E. faecium , 23.47% E. faecalis , 3.06% E. avium ) strains from 120-day-old healthy chickens that had never been treated with antimicrobials. Their antimicrobial resistance was evaluated by the agar disk diffusion method; high-level aminoglycoside (streptomycin and gentamicin) and vancomycin resistance were established using the microbroth dilution method. The highest percentages of resistant isolates were detected with quinupristin-dalfopristin (88.78%), rifampicin (64.29%), tetracyclines (45.92%), and enrofloxacin (41.84%). High percentages of susceptible strains were found with teicoplanin (100%), amoxicillin-clavulanic acid (97.96%), nitrofurantoin (94.90%), ampicillin (92.86%), chloramphenicol (90.82%), and linezolid (88.78%). About 60% of the strains were classified as MDR (multidrug-resistant). Moreover, PCR was carried out to investigate genes encoding for tetracyclines resistance determinants: tet (M), tet (L), tet (O), tet (K), and Int-Tn . Genes were detected in 68 (69.38%) strains: 36 were shown to be resistant with the agar disk diffusion method, while 28 were intermediate, and 2 were susceptible. The present study showed that chickens never treated with antimicrobials potentially harbor enterococci having phenotypic and genotypic characters of antimicrobial resistance.
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- 2024
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21. Characterization of morphological, reproductive, and productive performances of Mugellese breed: an update of knowledge.
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Mannelli F, Franzoni A, Galigani I, Nistri V, Daghio M, Scicutella F, Marzoni M, Minieri S, Salvucci S, Cerolini S, Iaffaldano N, Schiavone A, Cassandro M, Castellini C, and Buccioni A
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- Animals, Female, Fertility, Agriculture, Italy, Chickens genetics, Reproduction
- Abstract
The recovery, safeguarding, and valorization of autochthonous poultry breeds may contribute toward the preservation of animal biodiversity and utilization of marginal lands that otherwise offer little agricultural or industrial value. A key strategy in promoting local breeds involves the characterization of morphological traits and productive performances, which are influenced by the breed's genetic make-up as well as its environment. The Mugellese breed is an Italian local poultry breed originating in the Mugello area of north-east Tuscany. It is characterized by frugality, resilience and resistance to disease, cold, and heat stress. Moreover, these birds are particularly suitable for free-range farming. The Mugellese chicken is described as a dwarf breed with a medium neck, broad shoulders, fairly long and horizontal wings, wide, and well-developed breast (especially in the hen). Over the course of a 1-yr observation and data collection period, involving 23 breeders and 405 adult chickens, the Mugellese breed showed the following performances: 1) a hen-day egg production characterized by 2 major peaks: the first in the spring time (March-April, 65.75%), and the second in the late summer period (August-September, 51.86%); 2) high true fertility values (94.35%) throughout the entire breeding season; 3) a weight gain of 732.44 ± 117.06 g and a feed conversion ratio of 3.94 ± 2.42 at an age of 140 d; 4) a slaughter yield of 77.80% (± 3.91); v) a respective protein, fat, and mineral content in the yolk and albumen were: 27.21 ± 4.21 g, 57.77 ± 1.03 g and 3.47 ± 0.40 g per 100 g of yolk; and 82.50 ± 0.57 g, 0.12 ± 0.01 g and 5.43 ± 0.34 g per 100 g of albumen. More data are needed to validate the data obtained in this trial., Competing Interests: DISCLOSURES The authors declare that they have no competing interests., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2023
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22. Overview of Native Chicken Breeds in Italy: Small Scale Production and Marketing.
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Franzoni A, Gariglio M, Castillo A, Soglia D, Sartore S, Buccioni A, Mannelli F, Cassandro M, Cendron F, Castellini C, Mancinelli AC, Cerolini S, Sayed AA, Iaffaldano N, Di Iorio M, Marzoni M, Salvucci S, and Schiavone A
- Abstract
The intensive use of high-performing strains in poultry production has led to the extinction of several autochthonous chicken breeds and, consequently, loss of genetic variability. Interest in saving biodiversity is growing rapidly and has become a major objective worldwide. The aim of this study was to shed light on the production trends of native Italian poultry breeds and the related market. A questionnaire, which asked about the production cycles, the number of animals and table eggs produced per year and their retail prices was completed by 121 breeders across Italy. The surveyed breeders were divided into two categories: breeders conducting an agrozootechnical farm, referred to as 'farmers' (F); and breeders keeping chickens as backyard poultry, referred to as 'fancy breeders' (FB). Analysis of the data acquired indicated that animals were mainly slaughtered between 6 and 12 months of age, with F processing more animals per year. The same production trend was observed for table eggs. The recorded retail prices of native chicken products were higher than those for conventional products, but similar to those reported for valuable niche poultry products, such as the Poulet de Bresse in France and organic eggs. Knowledge about these highly valuable markets should be used to encourage the use of local breeds in alternative poultry farming and help protect biodiversity.
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- 2021
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23. Overview of Native Chicken Breeds in Italy: Conservation Status and Rearing Systems in Use.
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Castillo A, Gariglio M, Franzoni A, Soglia D, Sartore S, Buccioni A, Mannelli F, Cassandro M, Cendron F, Castellini C, Mancinelli AC, Iaffaldano N, Iorio MD, Marzoni M, Salvucci S, Cerolini S, Zaniboni L, and Schiavone A
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The most reared species of farm animal around the world is the chicken. However, the intensification of livestock systems has led to a gradual increase in the concentration of a limited number of breeds, resulting in substantial erosion to the genetic pool. The initial step of an 'animal conservation program' entails establishing the actual conservation statuses of the breeds concerned in a defined area; in this case, in Italy. To this end, a survey of breeds was performed by means of a census questionnaire divided into two parts. The first part collected information on breeds, breeders, housing facilities, and management aspects, the results of which are presented here. The second part of the questionnaire regarded chicken products and their markets, and these data will be reported in a second paper. The breed status of six chicken breeds was shown to be exceptionally worrying, with total numbers ranging from just 18 to 186 birds. Population sizes exceeding 1000 birds was identified for just four breeds, the maximum being 3400. Some improvements in status were noted in relation to breeds which had been the subject of conservation efforts in the past. The two most common breeds reported are the Bionda Piemontese, a double-purpose breed, and the Livorno egg-laying hen. Collo Nudo Italiano, Millefiori Piemontese, Pollo Trentino, and Tirolese chicken breeds and the Castano Precoce turkey breed were not listed by breeders at all. The most reported turkey breeds are the Bronzato Comune and the Ermellinato di Rovigo. The population sizes of native Italian poultry breeds were shown to be generally poor. Italian poultry farmers and the population at large are largely ignorant about indigenous poultry breeds. Thus, promoting the virtues of Italian breeds would help their conservation by encouraging breeders to rear these birds and consumers to buy their products. The identification of strategies to facilitate access to pure breed birds is essential, and will require the collaboration of university research centers, public entities, and breeders. The results presented in this paper constitute the initial part of a more complex conservation program.
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- 2021
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24. Dynamics of the shade-avoidance response in Arabidopsis.
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Ciolfi A, Sessa G, Sassi M, Possenti M, Salvucci S, Carabelli M, Morelli G, and Ruberti I
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- Arabidopsis genetics, Arabidopsis physiology, Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Regulatory Networks, Genome, Plant, Light Signal Transduction, Oligonucleotide Array Sequence Analysis, Arabidopsis radiation effects, Arabidopsis Proteins genetics, Light
- Abstract
Shade-intolerant plants perceive the reduction in the ratio of red light (R) to far-red light (FR) as a warning of competition with neighboring vegetation and display a suite of developmental responses known as shade avoidance. In recent years, major progress has been made in understanding the molecular mechanisms underlying shade avoidance. Despite this, little is known about the dynamics of this response and the cascade of molecular events leading to plant adaptation to a low-R/FR environment. By combining genome-wide expression profiling and computational analyses, we show highly significant overlap between shade avoidance and deetiolation transcript profiles in Arabidopsis (Arabidopsis thaliana). The direction of the response was dissimilar at the early stages of shade avoidance and congruent at the late ones. This latter regulation requires LONG HYPOCOTYL IN FAR RED1/SLENDER IN CANOPY SHADE1 and phytochrome A, which function largely independently to negatively control shade avoidance. Gene network analysis highlights a subnetwork containing ELONGATED HYPOCOTYL5 (HY5), a master regulator of deetiolation, in the wild type and not in phytochrome A mutant upon prolonged low R/FR. Network analysis also highlights a direct connection between HY5 and HY5 HOMOLOG (HYH), a gene functionally implicated in the inhibition of hypocotyl elongation and known to be a direct target of the HY5 transcription factor. Kinetics analysis show that the HYH gene is indeed late induced by low R/FR and that its up-regulation depends on the action of HY5, since it does not occur in hy5 mutant. Therefore, we propose that one way plants adapt to a low-R/FR environment is by enhancing HY5 function.
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- 2013
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25. A randomized trial of oral betamethasone to reduce ataxia symptoms in ataxia telangiectasia.
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Zannolli R, Buoni S, Betti G, Salvucci S, Plebani A, Soresina A, Pietrogrande MC, Martino S, Leuzzi V, Finocchi A, Micheli R, Rossi LN, Brusco A, Misiani F, Fois A, Hayek J, Kelly C, and Chessa L
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- Administration, Oral, Adolescent, Ataxia Telangiectasia diagnosis, Child, Female, Humans, Male, Treatment Outcome, Anti-Inflammatory Agents administration & dosage, Ataxia Telangiectasia drug therapy, Ataxia Telangiectasia physiopathology, Betamethasone administration & dosage
- Abstract
No controlled studies exist regarding the pharmaceutical reduction of ataxia symptoms in ataxia telangiectasia (A-T). In a multicenter, double-blind, randomized, placebo-controlled crossover trial, oral betamethasone (BETA) and placebo were compared in terms of their reduction of ataxia symptoms as assessed with the International Cooperative Ataxia Rating Scale (ICARS). In this study of 13 A-T children, betamethasone reduced the ICARS total score by a median of 13 points in the intent-to-treat population and 16 points in the per-protocol population (ie, median percent decreases of ataxia symptoms of 28% and 31%, respectively). In conclusion, Oral betamethasone could be a promising therapy to relieve ataxia symptoms in A-T patients; however, long-term effectiveness and safety must be established. (Current Controlled Trials, number ISRCTN08774933.), (Copyright © 2012 Movement Disorder Society.)
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- 2012
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26. The Arabidopsis homeodomain-leucine zipper II gene family: diversity and redundancy.
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Ciarbelli AR, Ciolfi A, Salvucci S, Ruzza V, Possenti M, Carabelli M, Fruscalzo A, Sessa G, Morelli G, and Ruberti I
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- Amino Acid Sequence, Arabidopsis growth & development, Arabidopsis physiology, Arabidopsis radiation effects, Arabidopsis Proteins chemistry, Arabidopsis Proteins metabolism, Chromosomes, Plant genetics, Gene Duplication radiation effects, Gene Expression Regulation, Plant radiation effects, Gene Regulatory Networks, Homeodomain Proteins chemistry, Light, Molecular Sequence Data, Phylogeny, Plant Epidermis cytology, Plant Epidermis radiation effects, Protein Structure, Tertiary, Sequence Alignment, Sequence Homology, Nucleic Acid, Arabidopsis genetics, Arabidopsis Proteins genetics, Genes, Plant, Genetic Variation radiation effects, Homeodomain Proteins genetics, Leucine Zippers genetics, Multigene Family
- Abstract
The Arabidopsis genome contains 10 genes belonging to the HD-Zip II family including ATHB2 and HAT2. Previous work has shown that ATHB2 is rapidly and strongly induced by light quality changes that provoke the shade avoidance response whereas HAT2 expression responds to auxin. Here, we present a genome-wide analysis of the HD-Zip II family. Phylogeny reconstruction revealed that almost all of the HD-Zip II genes can be subdivided into 4 clades (alpha-delta), each clade comprising 2-3 paralogs. Gene expression studies demonstrated that all the gamma and delta genes are regulated by light quality changes. Kinetics of induction, low R/FR/high R/FR reversibility and auxin response analyses strongly suggested that HAT1, HAT3 and ATHB4, as ATHB2, are under the control of the phytochrome system whereas HAT2 is up-regulated by low R/FR as a consequence of the induction of the auxin signaling pathway provoked by FR-rich light. Root and shoot digital in situ revealed that gamma and delta genes are also tightly regulated during plant development with both distinct and overlapping patterns. Phenotypes of gain of function and dominant negative lines demonstrated that one or more of the HD-Zip II gamma genes negatively regulate cell proliferation during leaf development in a high R/FR light environment. Finally, target gene analysis using a chimeric transcription factor (HD-Zip2-V-G), known to activate ATHB2 target genes in a glucocorticoid-dependent manner, revealed that all the 10 HD-Zip II genes can be recognized by the HD-Zip 2 domain in vivo, implying an intricate negative feedback network.
- Published
- 2008
- Full Text
- View/download PDF
27. Embedding mRNA stability in correlation analysis of time-series gene expression data.
- Author
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Farina L, De Santis A, Salvucci S, Morelli G, and Ruberti I
- Subjects
- Artificial Intelligence, Cell Cycle genetics, Databases, Genetic, Gene Expression, Genes, Fungal physiology, Oligonucleotide Array Sequence Analysis methods, Pattern Recognition, Automated, Predictive Value of Tests, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism, Time Factors, Gene Expression Profiling methods, RNA Stability
- Abstract
Current methods for the identification of putatively co-regulated genes directly from gene expression time profiles are based on the similarity of the time profile. Such association metrics, despite their central role in gene network inference and machine learning, have largely ignored the impact of dynamics or variation in mRNA stability. Here we introduce a simple, but powerful, new similarity metric called lead-lag R(2) that successfully accounts for the properties of gene dynamics, including varying mRNA degradation and delays. Using yeast cell-cycle time-series gene expression data, we demonstrate that the predictive power of lead-lag R(2) for the identification of co-regulated genes is significantly higher than that of standard similarity measures, thus allowing the selection of a large number of entirely new putatively co-regulated genes. Furthermore, the lead-lag metric can also be used to uncover the relationship between gene expression time-series and the dynamics of formation of multiple protein complexes. Remarkably, we found a high lead-lag R(2) value among genes coding for a transient complex.
- Published
- 2008
- Full Text
- View/download PDF
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