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1. Emergence of transmissible SARS-CoV-2 variants with decreased sensitivity to antivirals in immunocompromised patients with persistent infections

3. Fungal microbiota sustains lasting immune activation of neutrophils and their progenitors in severe COVID-19

4. Multi-omic profiling reveals early immunological indicators for identifying COVID-19 Progressors

5. Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

7. System-wide transcriptome damage and tissue identity loss in COVID-19 patients

8. Early immune factors associated with the development of post-acute sequelae of SARS-CoV-2 infection in hospitalized and non-hospitalized individuals

13. Interferon ɛ restricts Zika virus infection in the female reproductive tract

14. Distinct temporal trajectories and risk factors for Post-acute sequelae of SARS-CoV-2 infection

19. Interferon epsilon restricts Zika virus infection in the female reproductive tract

26. A metagenomic DNA sequencing assay that is robust against environmental DNA contamination

30. Sex-Related Differences in Clinical Presentation and Risk Factors for Mortality in Patients Hospitalized With Coronavirus Disease 2019 in New York City

31. Social and Clinical Determinants of COVID-19 Outcomes: Modeling Real-World Data from a Pandemic Epicenter

32. Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps

35. A common framework for agriculture and land use in the Nationally Determined Contributions

36. Profiling of immune dysfunction in COVID-19 patients allows early prediction of disease progression

38. CONTRIBUTORS

44. 519. Immune responses and COVID-19 severity

45. Longitudinal immune profiling of mild and severe COVID-19 reveals innate and adaptive immune dysfunction and provides an early prediction tool for clinical progression

48. Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

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