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Small interfering RNA (siRNA)-based drugs require chemical modifications or formulation to promote stability, minimize innate immunity, and enable delivery to target tissues. Partially modified siRNAs (up to 70% of the nucleotides) provide significant stabilization in vitro and are commercially available; thus are commonly used to evaluate efficacy of bio-conjugates for in vivo delivery. In contrast, most clinically-advanced non-formulated compounds, using conjugation as a delivery strategy, are fully chemically modified (100% of nucleotides). Here, we compare partially and fully chemically modified siRNAs in conjugate mediated delivery. We show that fully modified siRNAs are retained at 100x greater levels in various tissues, independently of the nature of the conjugate or siRNA sequence, and support productive mRNA silencing. Thus, fully chemically stabilized siRNAs may provide a better platform to identify novel moieties (peptides, aptamers, small molecules) for targeted RNAi delivery.

Summary: The development of clinically viable delivery methods presents one of the greatest challenges in the therapeutic application of CRISPR/Cas9 mediated genome editing. Here, we report the development of a lipid nanoparticle (LNP)-mediated delivery system that, with a single administration, enabled significant editing of the mouse transthyretin (Ttr) gene in the liver, with a >97% reduction in serum protein levels that persisted for at least 12 months. These results were achieved with an LNP delivery system that was biodegradable and well tolerated. The LNP delivery system was combined with a sgRNA having a chemical modification pattern that was important for high levels of in vivo activity. The formulation was similarly effective in a rat model. Our work demonstrates that this LNP system can deliver CRISPR/Cas9 components to achieve clinically relevant levels of in vivo genome editing with a concomitant reduction of TTR serum protein, highlighting the potential of this system as an effective genome editing platform. : Finn et al. describe the development of a transient, biodegradable LNP-based CRISPR/Cas9 delivery system that achieves >97% knockdown of serum TTR levels following a single administration. Editing levels were stable for 12 months, despite the transient nature of the delivery system and the editing components. Keywords: CRISPR, Cas9, genome editing, LNP, lipid nanoparticle, TTR, CRISPR/Cas9, liver delivery, gene therapy, sgRNA

International audience; A series of six hybrid polymers based on the mixed-valent {ε-PMoV8MoVI4O40Zn4} (εZn) Keggin unit have been synthesized under hydrothermal conditions using tritopic (1,3,5-benzenetricarboxylate (trim) or 1,3,5-benzenetribenzoate (BTB)) or ditopic (4,4′-biphenyldicarboxylate (biphen)) linkers and [M(bpy)3]2+ (M = Co, Ru) complexes as charge-compensating cations. (TBA)2[Co(C10H8N2)3][PMo12O37(OH)3Zn4](C27H15O6)4/3·1.5C27H18O6·24H2O (Co-ε(BTB)4/3) has a three-dimensional (3D) framework with two interpenetrated networks and is isostructural to (TBA)4[PMo12O37(OH)3Zn4](C27H15O6)4/3·1.5C27H18O6·8H2O (ε(BTB)4/3). In Co-ε(BTB)4/3, two tetrabutylammonium (TBA+) cations over the four present in ε(BTB)4/3 are replaced by one [Co(bpy)3]2+ complex. [Co(C10H8N2)3][PMo12O37(OH)3Zn4](C9H3O6)Co(C10H8N2)4(H2O)·16H2O (Co-ε(trim) (bpy)2) is a 1D coordination polymer with two types of CoII-containing complexes, one covalently attached to the 1D chains and the other located in the voids as the counterion. [Ru(C10H8N2)3]4[PMo12O38(OH)2Zn4]2(C9H3O6)2·42H2O (Ru-ε2(trim)2) and [Ru(C10H8N2)3]3[PMo12O37(OH)3Zn4Cl]2(C14H8O4)2·24H2O (Ru-ε2(biphen)2) contain dimeric (εZn)2 units linked by dicarboxylate linkers, and both have [Ru(bpy)3]2+ countercations. Ru-ε2(trim)2 has a 3D framework, while Ru-ε2(biphen)2 is only 2D because of the presence of chloride ions on one-fourth of the ZnII ions. [P(C6H5)4]6[PMo12O37(OH)3Zn4]2(C9H3O6)2·18H2O (PPh4-ε2(trim)2) is isostructural to Ru-ε2(trim)2. These insoluble compounds entrapped in carbon-paste electrodes exhibit electrocatalytic activity for the hydrogen evolution reaction. The effects of their structure and the nature of the counterions on the activity have been studied. For the first time, different POM-based coordination polymers are compared for catalytic H2 production using controlled-potential electrolysis. This study shows that the nature of the countercation has a strong effect on the electrocatalytic activity of the compound.

International audience; The luminescent [EuW10O36]9− polyoxometalate has been introduced into the cavities of the highly porous zirconium luminescent metal-organic framework UiO-67 via a direct synthesis approach, affording the EuW10@UiO-67 hybrid. Using a combination of techniques (TGA, BET, elemental analysis, EDX mapping,…) this new material has been fully characterized, evidencing that it contains only 0.25% in europium and thatthe polyoxometalate units are located inside the octahedral cavities and not at the surface of the UiO-67 crystallites. Despite the low amount of europium, it is shown that EuW10@UiO-67 acts as a solid-state luminescent sensor for the detection of amino-acids, the growth of the emission intensity globally following the growth of the amino-acid pKa. In addition, EuW10@UiO-67 acts as a sensor for the detection ofmetalliccations, with a high sensitivity for Fe3+. Noticeably, the recyclability of the reported material has been established. Finally, it is shown that the dual-luminescent EuW10@UiO-67 material behave as a self-calibrated-ratiometric thermometer in the physiological range.

Three monomeric polyoxometalates [M(C10H8N2)3][α-PMoVI9MoV3O40Zn2(C10H8N2)2]·2H2O (M-PMo12Zn2, M = Fe, Co, Ru) with {Zn(bpy)2}2+ units capped on reduced α-Keggin polyanions and [M(bpy)3]2+ counter-ions were synthesized under hydrothermal conditions. The 1D polymer [N(C4H9)4][Ru(C10H8N2)3][α-PMoVI8MoV6O43] (Ru-PMo14) was prepared by a similar strategy, in the absence of 2,2′-bpy ligands. In this chain capped reduced Keggin anions are linked via Mo–O–Mo bridges and are surrounded by both tetrabutylammonium cations and [Ru(bpy)3]2+ counter-ions. The compounds were characterized in the solid state by single crystal and powder X-ray diffraction and IR spectroscopy and in solution by 31P NMR spectroscopy. 31P diffusion ordered NMR spectroscopy (DOSY) indicates that the diffusion coefficient of the dissolved species of Ru-PMo14 corresponds to a dimeric structure. Magnetic susceptibility measurements performed on Ru-PMo14 show the existence of antiferromagnetic interactions between the d1 electrons of the six MoV centers, with a singlet spin ground state. However, attempts to fit the data in the 2–300 K temperature range with Heisenberg Hamiltonians adapted for 0 or 1D systems suggest that these electrons are delocalized. Density Functional Theory (DFT) and Wave Function Theory (WFT) calculations indicate a migration of the electrons of the capping MoV centers into the PMo12 units at high temperature, allowing the rationalization of the experimental observations.

SummaryArgonaute proteins repress gene expression and defend against foreign nucleic acids using short RNAs or DNAs to specify the correct target RNA or DNA sequence. We have developed single-molecule methods to analyze target binding and cleavage mediated by the Argonaute:guide complex, RISC. We find that both eukaryotic and prokaryotic Argonaute proteins reshape the fundamental properties of RNA:RNA, RNA:DNA, and DNA:DNA hybridization—a small RNA or DNA bound to Argonaute as a guide no longer follows the well-established rules by which oligonucleotides find, bind, and dissociate from complementary nucleic acid sequences. Argonautes distinguish substrates from targets with similar complementarity. Mouse AGO2, for example, binds tighter to miRNA targets than its RNAi cleavage product, even though the cleaved product contains more base pairs. By re-writing the rules for nucleic acid hybridization, Argonautes allow oligonucleotides to serve as specificity determinants with thermodynamic and kinetic properties more typical of RNA-binding proteins than of RNA or DNA.

A series of compounds resulting from the ionic association of a nanoscopic inorganic cluster of formula [K2NaxLiy{Mo4O4S4(OH)2(H2O)3}2(HzP8W48O184)](34−x−y−z)−, 1, with several organic cations such as dimethyldioctadecylammonium DODA+, trimethylhexadecylammonium TMAC16+, alkylmethylimidazoliums mimCn+ (n = 12–20) and alkyl-dimethylimidazoliums dmimCn+ (n = 12 and 16) was prepared and characterized in the solid state by FT-IR, EDX, Elemental analysis, TGA and solid state NMR. The solid state NMR experiments performed on 1H, 13C and 31P nuclei evidenced the interactions between the cations and 1 as well as the organization of the alkyl chains of the cations within the solid. Polarized optical microscopy, DSC and SA-XRD experiments implicated mesomorphic phases for DODA+ and mimCn+ salts of 1. The crystallographic parameters were determined and demonstrated that the inter-lamellar spacing could be controlled upon changing the length of the alkyl chain, a very interesting result if we consider the huge size of the inorganic cluster 1 and the simple nature of the cations.

Five molecular one-, two-, or three-dimensional (1D, 2D, or 3D) organic–inorganic hybrid polyoxometalates (POMs) based on the {e-PMoV8MoVI4O40Zn4} (eZn) Keggin unit have been synthesized under hydrothermal conditions using a mixture of O- and N-donor ligands. (TBA)6[PMoV8MoVI4O37(OH)3Zn4]2(C14H8O4)3·6H2O (e2(biphen)3) is a 3D material with two interpenetrated networks built from dimeric (eZn)2 POMs linked by 4,4′-biphenyldicarboxylate (biphen) ligands. (TBA)2[PMoV8MoVI4O38(OH)2Zn4](C7H6N2)3(C14H8O4)1/2·H2O (e(bim)3(biphen)1/2), (TBA)3[PMoV8MoVI4O38(OH)2Zn4](C7H6N2)2(C8H4O4)·6H2O (e(bim)2(isop)), (TBA)7/3[PMoV8MoVI4O38(OH)2Zn4](C7H6N2)8/3(C8H4O4)2/3 (e(bim)8/3(bdc)2/3), and (TBA)3[PMoV8MoVI4O38(OH)2Zn4](C7H6N2)2(C9H3O6)2/3·6H2O (e(bim)2(trim)2/3) all consist of monomeric eZn units bound to two types of organic ligands: benzimidazole (bim) and one of the following carboxylate ligands: biphen, 1,3-benzenedicarboxylate (isop), 1,4-benzenedicarboxylate (bdc), or 1,3,5-benzenetricarboxylate (trim) ligands. Whil...

Three compounds associating for the first time polyoxotungstates, bisphosphonates, and copper ions were structurally characterized. They consist in heteropolyanionic monodimensional materials where [Cu6(Ale)4(H2O)4](4-) (Ale = alendronate = [O3PC(O)(C3H6NH3)PO3](4-)) complexes alternate with polyoxometalate (POM) units. In Na12[{SiW9O34Cu3(Ale)(H2O)}{Cu6(Ale)4(H2O)4}]·50H2O (SiW9CuAle), the polyoxometalate core consists in a {SiW9Cu3} monomer capped by a pentacoordinated Ale ligand, while sandwich-type Keggin {(SbW9O33)2Cu3(H2O)(2.5)Cl(0.5)} and Dawson {(P2W15O56)2Cu4(H2O)2} complexes are found in Na8Li29[{(SbW9O33)2Cu3(H2O)(2.5)Cl(0.5)}2{Cu6(Ale)4(H2O)4}3]·163H2O (SbW9CuAle) and Na20[{(P2W15O56)2Cu4(H2O)2}{Cu6(Ale)4(H2O)4}]·50H2O (P2W15CuAle), respectively. A comparative magnetic study of the SiW9CuAle and SbW9CuAle compounds enabled full quantification of the Cu(II) superexchange interactions both for the POM and non-POM subunits, evidencing that, while the paramagnetic centers are anti-ferromagnetically coupled in the polyoxometalate units, both anti-ferromagnetic and ferromagnetic interactions coexist in the {Cu6(Ale)4(H2O)4} cluster. All the studied compounds present a good efficiency upon the reduction of HNO2 or NO2(-), the POM acting as a catalyst. However, it has been found that SbW9CuAle is inactive toward the reduction of nitrates, highlighting that both the {(SbW9O33)2Cu3} unit and the {Cu6(Ale)4(H2O)4} cluster do not act as electrocatalysts for this reaction. In contrast, SiW9CuAle and P2W15CuAle have shown a significant activity upon the reduction of NO3(-) and thus both at pH 1 and pH 5, evidencing that the chemical nature of the polyoxometalate is a crucial parameter even if it acts as precatalyst. Moreover, comparison of the activities of P2W15CuAle and [(P2W15O56)2Cu4(H2O)2](16-) evidenced that if the [Cu6(Ale)4(H2O)4](4-) cluster does not act as electrocatalyst, it acts as a cofactor, significantly enhancing the catalytic efficiency of the active POM.

Different Polyoxometalate (POM) based hybrid materials were synthesised during this doctorate. In the first type of materials, called POM@MOF, POMs are incorporated in the porous cavities of a Metal-Organic-Framework (MOF). These materials were synthesised by a impregnation method in an aqueous medium or by direct synthesis in solvothermal conditions. They were then extensively characterised. For every material, the stability or transformation of the POMs during the incorporation was accurately established. The POM@MOFs materials were then studied for their applications in magnetism, for detection and in catalysis. In a second time, POM-based hybrid coordination polymers (called POMOFs) made from ε-Keggin isomers connected by organic linkers were synthesised by a hydrothermal method. New POMOFs structures have been obtained with POMs, carboxylate linkers and metallic complexes as non-innocents counter ions. The catalytic activity of these materials toward protons reduction was studied by electrocatalysis and photocatalysis. In parallel, syntheses of soluble molecular compounds based on ε-Keggin POMs were also performed. Finally, hybrid species incorporating transition metals and bisphosphonate linkers were synthesised : three copper(II) based polymers and a molecular coumpound incorporating iron(III). The magnetic and catalytic (reduction of NOx) properties of these materials were then studied. The iron based species was also selected as substrate for the deposition on a silica surface., Différents matériaux hybrides à base de polyoxométallates (POMs) ont été synthétisés au cours de cette thèse. Dans un premier type de matériaux, appelé POM@MOF, des POMs sont incorporés au sein des cavités poreuses d'un Metal-Organic-Framework (MOF). Ces matériaux ont été synthétisés par une méthode d'imprégnation en milieu aqueux ou par synthèse directe en conditions solvothermales. Ils ont ensuite été caractérisés de manière approfondie. La stabilité ou l'évolution des polyoxométallates lors de l'incorporation dans le MOF étant chaque fois parfaitement établie. Les matériaux POM@MOFs ont ensuite été étudiés pour leurs applications en magnétisme, pour la détection et en catalyse. Dans un second temps, des polymère de coordination hybrides à base de POMs (surnomés POMOFs) construits à partir d'isomères ε-Keggin reliés par des ligands organiques ont été synthétisés par voie hydrothermale. De nouvelles structures POMOFs ont pu être obtenue en présence de POMs, de ligands carboxylates et de complexes métalliques comme contre-ions non-innocents. L'activité de ces matériaux vis-à-vis de la réduction des protons a été étudiée par électrocatalyse et photocatalyse. Parallèlement, des synthèses de composés moléculaires solubles à base de POMs ε-Keggin ont également été réalisées. Finalement, des espèces hybrides incorporant des métaux de transitions et des ligands bisphosphonates ont été synthétisées : des polymères incorporant du cuivre(II) et un composé moléculaire à base fer(III). Ces espèces ont ensuite été étudiées pour leurs propriétés magnétiques, catalytiques pour la réduction des NOx. L'espèce à base de fer a également été sélectionnée comme substrat pour des études de dépôt sur surface de silice.

Phagocytic macrophages and dendritic cells are desirable targets for potential RNAi (RNA interference) therapeutics because they often mediate pathogenic inflammation and autoimmune responses. We recently engineered a complex 5 component glucan-based encapsulation system for siRNA (small interfering RNA) delivery to phagocytes. In experiments designed to simplify this original formulation, we discovered that the amphipathic peptide Endo-Porter forms stable nanocomplexes with siRNA that can mediate potent gene silencing in multiple cell types. In order to restrict such gene silencing to phagocytes, a method was developed to entrap siRNA–Endo-Porter complexes in glucan shells of 2–4 μm diameter in the absence of other components. The resulting glucan particles containing fluorescently labelled siRNA were readily internalized by macrophages, but not other cell types, and released the labelled siRNA into the macrophage cytoplasm. Intraperitoneal administration of such glucan particles containing siRNA–Endo-Porter complexes to mice caused gene silencing specifically in macrophages that internalized the particles. These results from the present study indicate that specific targeting to phagocytes is mediated by the glucan, whereas Endo-Porter peptide serves both to anchor siRNA within glucan particles and to catalyse escape of siRNA from phagosomes. Thus we have developed a simplified siRNA delivery system that effectively and specifically targets phagocytes in culture or in intact mice.

RNA interference (RNAi) has been established as an important tool for functional genomics studies and has great promise as a therapeutic intervention for human diseases. In mammalian cells, RNAi is conventionally induced by 19–27-bp RNA duplexes generated by hybridization of two complementary oligonucleotide strands (oligos). Here we describe a novel class of RNAi molecules composed of a single 25–28-nucleotide (nt) oligo. The oligo has a 16-nt mRNA targeting region, followed by an additional 8–10 nt to enable self-dimerization into a partially complementary duplex. Analysis of numerous diverse structures demonstrates that molecules composed of two short helices separated by a loop can efficiently enter and activate the RNA-induced silencing complex (RISC). This finding enables the design of highly effective single-oligo compounds for any mRNA target.

The encapsulation of polyoxometalates within the large pores of the Zr(IV) biphenyldicarboxylate UiO-67 metal–organic framework has been achieved, for the first time, by direct solvothermal synthesis. The resulting POM@UiO-67 composite materials were fully characterized by XRPD, IR, MAS NMR, N2 porosimetry measurements and cyclic voltammetry.

A series of compounds resulting from the ionic association of a nanoscopic inorganic cluster of formula [K2NaxLiy{Mo4O4S4(OH)2(H2O)3}2(HzP8W48O184)]((34-x-y-z)-), 1, with several organic cations such as dimethyldioctadecylammonium DODA(+), trimethylhexadecylammonium TMAC16(+), alkylmethylimidazoliums mimCn(+) (n = 12-20) and alkyl-dimethylimidazoliums dmimCn(+) (n = 12 and 16) was prepared and characterized in the solid state by FT-IR, EDX, Elemental analysis, TGA and solid state NMR. The solid state NMR experiments performed on (1)H, (13)C and (31)P nuclei evidenced the interactions between the cations and 1 as well as the organization of the alkyl chains of the cations within the solid. Polarized optical microscopy, DSC and SA-XRD experiments implicated mesomorphic phases for DODA(+) and mimCn(+) salts of 1. The crystallographic parameters were determined and demonstrated that the inter-lamellar spacing could be controlled upon changing the length of the alkyl chain, a very interesting result if we consider the huge size of the inorganic cluster 1 and the simple nature of the cations.

Small interfering RNAs (siRNAs) direct Argonaute proteins, the core components of the RNA-induced silencing complex (RISC), to cleave complementary target RNAs. Here, we describe a method to purify active RISC containing a single, unique small RNA guide sequence. We begin by capturing RISC using a complementary 2′-O-methyl oligonucleotide tethered to beads. Unlike other methods that capture RISC but do not allow its recovery, our strategy purifies active, soluble RISC in good yield. The method takes advantage of the finding that RISC partially paired to a target through its siRNA guide dissociates more than 300 times faster than a fully paired siRNA in RISC. We use this strategy to purify fly Ago1- and Ago2-RISC, as well as mouse AGO2-RISC. The method can discriminate among RISCs programmed with different guide strands, making it possible to deplete and recover specific RISC populations. Endogenous microRNA:Argonaute complexes can also be purified from cell lysates. Our method scales readily and takes less than a day to complete.

SummaryMicroRNAs (miRNAs) and small interfering RNAs (siRNAs) guide Argonaute proteins to silence mRNA expression. Argonaute binding alters the properties of an RNA guide, creating functional domains. We show that the domains established by Argonaute—the anchor, seed, central, 3′ supplementary, and tail regions—have distinct biochemical properties that explain the differences between how animal miRNAs and siRNAs bind their targets. Extensive complementarity between an siRNA and its target slows the rate at which fly Argonaute2 (Ago2) binds to and dissociates from the target. Highlighting its role in antiviral defense, fly Ago2 dissociates so slowly from extensively complementary target RNAs that essentially every fully paired target is cleaved. Conversely, mouse AGO2, which mainly mediates miRNA-directed repression, dissociates rapidly and with similar rates for fully paired and seed-matched targets. Our data narrow the range of biochemically reasonable models for how Argonaute-bound siRNAs and miRNAs find, bind, and regulate their targets.

Small RNAs loaded into Argonaute proteins direct silencing of complementary target mRNAs. It has been proposed that multiple, imperfectly complementary small interfering RNAs or microRNAs, when bound to the 3′ untranslated region of a target mRNA, function cooperatively to silence target expression. We report that, in cultured human HeLa cells and mouse embryonic fibroblasts, Argonaute1 (Ago1), Ago3, and Ago4 act cooperatively to silence both perfectly and partially complementary target RNAs bearing multiple small RNA-binding sites. Our data suggest that for Ago1, Ago3, and Ago4, multiple, adjacent small RNA-binding sites facilitate cooperative interactions that stabilize Argonaute binding. In contrast, small RNAs bound to Ago2 and pairing perfectly to an mRNA target act independently to silence expression. Noncooperative silencing by Ago2 does not require the endoribonuclease activity of the protein: A mutant Ago2 that cannot cleave its mRNA target also silences noncooperatively. We propose that Ago2 binds its targets by a mechanism fundamentally distinct from that used by the three other mammalian Argonaute proteins.

Chemical modification of RNA duplexes can provide practical advantages for RNA interference (RNAi) triggering molecules including increased stability, safety and specificity. The impact of nucleotide modifications on Dicer processing, RISC loading and RNAi-mediated mRNA cleavage was investigated with duplexes >or=25 bp in length. It is known that dsRNAs >or=25 bp are processed by Dicer to create classic 19-bp siRNAs with 3'-end overhangs. We demonstrate that the presence of minimal modification configurations on longer RNA duplexes can block Dicer processing and result in the loading of the full-length guide strand into RISC with resultant mRNA cleavage at a defined site. These longer, modified duplexes can be highly potent gene silencers, with EC50s in the picomolar concentration range, demonstrating that Dicer processing is not required for incorporation into RISC or potent target silencing.