37 results on '"Sagredo B"'
Search Results
2. Linkage analysis of a rare alkaloid present in a tetraploid potato with Solanum chacoense background
- Author
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Sagredo, B., Lorenzen, J., Casper, H., and Lafta, A.
- Published
- 2011
- Full Text
- View/download PDF
3. RNAseq reveals diferent transcriptomic responses to GA3 in early and midseason varieties before ripening initiation in sweet cherry fruits
- Author
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Kuhn N, Maldonado J, Ponche C, Arellano M, Time A, Multari S, Martens S, Carrera E, Donoso JM, Sagredo B, and Meisel L
- Published
- 2021
4. RNAseq reveals diferent transcriptomic responses to GA3 in early and midseason varieties before ripening initiation in sweet cherry fruits
- Author
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Kuhn, Nathalie, Maldonado, Jonathan, Ponche C, Arellano, Macarena, Time A, Multari, Salvatore, Martens, Stefan, Carrera, Esther, Donoso, José Manuel, Sagredo B, Meisel, Lee A., Kuhn, Nathalie, Maldonado, Jonathan, Ponche C, Arellano, Macarena, Time A, Multari, Salvatore, Martens, Stefan, Carrera, Esther, Donoso, José Manuel, Sagredo B, and Meisel, Lee A.
- Published
- 2021
5. Differential Phenolic Compounds and Hormone Accumulation Patterns between Early- And Mid-Maturing Sweet Cherry (Prunus avium L.) Cultivars during Fruit Development and Ripening
- Author
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Ponce, Claudio, Kuhn, Nathalie, Arellano, Macarena, Time, A, Multari, Salvatore, Martens, Stefan, Carrera, Esther, Sagredo, B, Donoso, José Manuel, Meisel, Lee A., Ponce, Claudio, Kuhn, Nathalie, Arellano, Macarena, Time, A, Multari, Salvatore, Martens, Stefan, Carrera, Esther, Sagredo, B, Donoso, José Manuel, and Meisel, Lee A.
- Abstract
Color acquisition is one of the most distinctive features of fruit development and ripening processes. The color red is closely related to the accumula
- Published
- 2021
6. ABA influences color initiation timing in P. avium L. fruits by sequentially modulating the transcript levels of ABA and anthocyanin-related genes
- Author
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Kuhn, Nathalie, Ponce, Claudio, Arellano, Macarena, Time, A, Multari, Salvatore, Martens, Stefan, Carrera, Esther, Sagredo, B, Donoso, José Manuel, Meisel, Lee A., Kuhn, Nathalie, Ponce, Claudio, Arellano, Macarena, Time, A, Multari, Salvatore, Martens, Stefan, Carrera, Esther, Sagredo, B, Donoso, José Manuel, and Meisel, Lee A.
- Abstract
In sweet cherry, as in most non-climacteric species, abscisic acid (ABA) plays a major role in the control of fruit ripening and color development. Although the ABA treatment of sweet cherry fruits has been reported to upregulate anthocyanin pathway-related genes or ABA pathway-related genes, the temporality of molecular and physiological events occurring during color development and the ABA control of these events during the color initiation are lacking in this species. In this work, we analyzed variations in the Index of Absorbance Difference (IAD), a maturity index, and total anthocyanins along with changes in transcript abundance of ABA and anthocyanin pathway-related genes, from light green to red fruit stages. PavNCED1 and ABA signaling pathway-related genes upregulated when fruits transitioned from light green to pink stage, whereas anthocyanin pathway-related transcripts increased from pink to the red stage, together with increases in the anthocyanin content and IAD, suggesting sequentiality in molecular and physiological events during color development. Additionally, ABA applied at color initiation in planta advanced IAD, increased anthocyanin content, and yielded darker fruits at harvest. These changes were accompanied by changes in the transcript accumulation of ABA and anthocyanin pathway-related genes. This in planta treatment of sweet cherry fruits with ABA confirms that ABA is a central player in the control of color initiation in sweet cherries, associated with the transcript accumulation of genes involved in ABA homeostasis and signaling, which is followed by the up-regulation of anthocyanin pathway-related genes and color development.
- Published
- 2021
7. Mapping of genes associated with leptine content of tetraploid potato
- Author
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Sagredo, B., Lafta, A., Casper, H., and Lorenzen, J.
- Published
- 2006
- Full Text
- View/download PDF
8. Evolution of the sweet cherry industry in Chile
- Author
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Donoso, J.M., primary, Lemus, G., additional, Arribillaga, D., additional, and Sagredo, B., additional
- Published
- 2019
- Full Text
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9. Use ofS-alleles and microsatellite genotyping for parental identification and to verify interspecific hybridization in a ChileanPrunusrootstock breeding program
- Author
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Guajardo, V., primary, Gainza-Cortés, F., additional, Meza, P., additional, Álvarez, C., additional, Prieto, H., additional, Sagredo, B., additional, Hinrichsen, P., additional, and Muñoz, C., additional
- Published
- 2017
- Full Text
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10. New raspberry cultivars for Chile: first releases from the local breeding program
- Author
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Gambardella, M., primary, Bañados, P., additional, Sánchez, S., additional, Grez, J., additional, Contreras, E., additional, and Sagredo, B., additional
- Published
- 2016
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11. Fundamentos para la extensión de la edad pediátrica hasta el término de la adolescencia a nivel de toda la red asistencial de salud: Recomendación del Comité de Adolescencia de la Sociedad Chilena de Pediatría
- Author
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Verónica Gaete P, M. Eugenia Henríquez C, Paz Robledo H, Tamara Zubarew G, Eldreth Peralta V, Claudia Sagredo B, and Francisco Funes D
- Subjects
Philosophy ,Pediatrics, Perinatology and Child Health ,Humanities - Abstract
Al menos par-cialmente, ello se debe a una estructuracion in-adecuada de la atencion, que escinde al grupo juvenil, especialmente a nivel de la Atencion Secundaria y Terciaria (mayores y menores de 15 anos). Esto ha generado:• Una ausencia de vision de los adolescentes como tales, quienes han sido erroneamente asumidos como otros ninos mas en el siste-ma pediatrico y como adultos en la red de atencion de la adultez. Se les ha abordado sin una perspectiva del desarrollo propio de esta etapa de la vida, que ademas sea con-tinua y progresiva, difi cultando su proceso de crecimiento y desarrollo psicosocial, y fi nalmente el logro de su autonomia y auto-cuidado en salud
- Published
- 2011
12. Fundamentos para la extensión de la edad pediátrica hasta el término de la adolescencia a nivel de toda la red asistencial de salud: Recomendación del Comité de Adolescencia de la Sociedad Chilena de Pediatría
- Author
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Gaete P, Verónica, primary, Henríquez C, M. Eugenia, additional, Robledo H, Paz, additional, Zubarew G, Tamara, additional, Peralta V, Eldreth, additional, Sagredo B, Claudia, additional, and Funes D, Francisco, additional
- Published
- 2011
- Full Text
- View/download PDF
13. Linkage analysis of a rare alkaloid present in a tetraploid potato with Solanum chacoense background
- Author
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Sagredo, B., primary, Lorenzen, J., additional, Casper, H., additional, and Lafta, A., additional
- Published
- 2010
- Full Text
- View/download PDF
14. Sexualidad en estudiantes varones: conocimientos, actitudes y conductas (+ DE 6 AUOTRES)
- Author
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Valenzuela G., M. Solange, Vesperinas A., Rodrigo, Sagredo B., Claudia, Venegas G., Sandra, Velten, Michel, Pedraza H., Mariela, Villarroel, Verónica, Szot M., José, Nahmías, Daniel, Valenzuela G., M. Solange, Vesperinas A., Rodrigo, Sagredo B., Claudia, Venegas G., Sandra, Velten, Michel, Pedraza H., Mariela, Villarroel, Verónica, Szot M., José, and Nahmías, Daniel
- Abstract
Estudio realizado en 165 varones, alumnos de 3º año de Enseñanza Media de establecimientos educacionales de la Región Metropolitana, de niveles socioeconómicos opuestos. Los estudiantes fueron entrevistados personalmente en sus colegios. El instrumento se adaptó de encuestas realizadas en América Latina y Estados Unidos, además de preguntas del grupo investigador. Entre los resultados se destaca que más del 30% no ha recibido educación sexual y del grupo que la ha tenido, Esta ha sido a edades tardías, siendo el grado de conocimientos deficientes. Aproximadamente el 50% ha tenido relaciones sexuales a una edad promedio de 14,8 años con bajo porcentajes de uso de anticonceptivos, básicamente porque no esperaban tener relaciones sexuales. Se destaca la importancia de conocer las necesidades particulares de este grupo de la población; por cuanto de esta manera se podrá poner en marcha programas o acciones que sean de utilidad realmente para ellos.
- Published
- 1993
15. Sensitive detection of potato spindle tuber viroid using RT-PCR and identification of a viroid variant naturally infecting pepino plants
- Author
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Shamloul, A.M., primary, Hadidi, A., additional, Zhu, S.F., additional, Singh, R.P., additional, and Sagredo, B., additional
- Published
- 1997
- Full Text
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16. Thiobacillus ferrooxidans tyrosyl-tRNA synthetase functions in vivo in Escherichia coli
- Author
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Salazar, O, primary, Sagredo, B, additional, Jedlicki, E, additional, Söll, D, additional, Weygand-Durasevic, I, additional, and Orellana, O, additional
- Published
- 1994
- Full Text
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17. Editorial: Using rootstocks in crops and fruit trees to mitigate the effects of climate change and abiotic stress.
- Author
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Martínez JP, Sagredo B, and Moreno MÁ
- Abstract
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
- Published
- 2024
- Full Text
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18. Sweet Cherry Plants Prioritize Their Response to Cope with Summer Drought, Overshadowing the Defense Response to Pseudomonas syringae pv. syringae .
- Author
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Villalobos-González L, Carreras C, Beltrán MF, Figueroa F, Rubilar-Hernández C, Opazo I, Toro G, Salvatierra A, Sagredo B, Pizarro L, Fiore N, Pinto M, Arbona V, Gómez-Cadenas A, and Pimentel P
- Abstract
Disease severity and drought due to climate change present significant challenges to orchard productivity. This study examines the effects of spring inoculation with Pseudomonas syringae pv. syringae ( Pss ) on sweet cherry plants, cvs. Bing and Santina with varying defense responses, assessing plant growth, physiological variables (water potential, gas exchange, and plant hydraulic conductance), and the levels of abscisic acid (ABA) and salicylic acid (SA) under two summer irrigation levels. Pss inoculation elicited a more pronounced response in 'Santina' compared to 'Bing' at 14 days post-inoculation (dpi), and those plants inoculated with Pss exhibited a slower leaf growth and reduced transpiration compared to control plants during 60 dpi. During differential irrigations, leaf area was reduced 14% and 44% in Pss inoculated plants of 'Bing' and 'Santina' respectively, under well-watered (WW) conditions, without changes in plant water status or gas exchange. Conversely, water-deficit (WD) conditions led to gas exchange limitations and a 43% decrease in plant biomass compared to that under WW conditions, with no differences between inoculation treatments. ABA levels were lower under WW than under WD at 90 dpi, while SA levels were significantly higher in Pss -inoculated plants under WW conditions. These findings underscore the influence on plant growth during summer in sweet cherry cultivars that showed a differential response to Pss inoculations and how the relationship between ABA and SA changes in plant drought level responses.
- Published
- 2024
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19. Development of a Genome-Informed Protocol for Detection of Pseudomonas amygdali pv. morsprunorum Using LAMP and PCR.
- Author
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Díaz D, Zamorano A, García H, Ramos C, Cui W, Carreras C, Beltrán MF, Sagredo B, Pinto M, and Fiore N
- Abstract
One of the causal agents of bacterial canker is Pseudomonas amygdali pv. morsprunorum -Pam (formerly Pseudomonas syringae pv. morsprunorum ). Recently detected in Chile, Pam is known to cause lesions in the aerial parts of the plant, followed by more severe symptoms such as cankers and gummosis in the later stages of the disease. This study presents the design of PCR and LAMP detection methods for the specific and sensitive identification of Pseudomonas amygdali pv. morsprunorum (Pam) from cherry trees. Twelve Pseudomonas isolates were collected, sequenced, and later characterized by Multi-locus Sequence Analysis (MLSA) and Average Nucleotide Identity by blast (ANIb). Three of them (11116B2, S1 Pam, and S2 Pam) were identified as Pseudomonas amygdali pv. morsprunorum and were used to find specific genes through RAST server, by comparing their genome with that of other Pseudomonas , including isolates from other Pam strains. The effector gene HopAU1 was selected for the design of primers to be used for both techniques, evaluating sensitivity and specificity, and the ability to detect Pam directly from plant tissues. While the PCR detection limit was 100 pg of purified bacterial DNA per reaction, the LAMP assays were able to detect up to 1 fg of purified DNA per reaction. Similar results were observed using plant tissues, LAMP being more sensitive than PCR, including when using DNA extracted from infected plant tissues. Both detection methods were tested in the presence of 30 other bacterial genera, with LAMP being more sensitive than PCR.
- Published
- 2023
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20. Genome Sequence Resources of Pseudomonas syringae Strains Isolated from Sweet Cherry Orchards in Chile.
- Author
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Correa F, Beltrán MF, Millas P, Moreno Z, Hinrichsen P, Meza P, and Sagredo B
- Subjects
- Chile, Plant Diseases, Pseudomonas syringae genetics, Actinidia, Prunus avium
- Published
- 2022
- Full Text
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21. First report of Pseudomonas viridiflava causing fruit rot on sweet cherry trees in Chile.
- Author
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Beltrán F, Correa F, Moreno Z, Otarola J, Sagredo B, and Millas P
- Abstract
Chile is an important producers of sweet cherry ( Prunus avium L.), with a total of 356,385 t exported in the 2021 to 2022 season. The production area includes most of the country's regions. Bacterial samples were isolated in 2017 and 2018 from 18 commercial sweet cherry orchards with canker disease. From one of this samples collected in the spring of 2018, was isolated the strain A2M176 from buds of trees that presented canker and gomosis in Malloa locality (34°23' 46'' S 71°01' 39'' W). The strain produced fluorescent pigment on King's B agar medium. Is oxidase and arginine dihydrolase negative, potato soft rot positive and showed a slight degree of tobacco hypersensitivity. It was able to growth up to 0.8 mM (200 ppm) of CuSO4·5H2O. The strain A2M176 was deposited in the Colección Chilena de Recursos Genéticos Microbianos (CChRGM) under the no. RGM 3342. The DNA of this strain was extracted from a pure culture using silica spin columns (Epoch Life Science Inc., Sugar Land, USA). The complete DNA was sequenced using HiSeq with 150 bp paired-end at GENEWIZ (New York, USA). Raw data was checked using FASTQC and trimmed with BBDuk. The genome was assembled using Unicycler v0.4.9 with defaulf settings and annotated with Prokaryotic Genome Annotation Pipeline (PGAP) v4.3. The reads and genomes were uploaded to GenBank under the BioProyect no. PRJNA750090, BioSample no. SAMN26870984 and assembly no. GCA_022936465.1. The sequenced genome was compared through Average Nucleotide Identity algorithm (ANI) using FastANI v1.33 to compare with closest complete genome available on NCBI. The strain A2M176 was identified as P. viridiflava with ANI value of 98.06% with the strain p22.E7 (GCF_900585495). Maximum likelihood phylogenetic estimation clustered strain A2M176 with other P. viridiflava strains with 95% bootstrap. The pathogenicity of the strain was tested inoculating immature cherry fruits with a needle with a bacterial suspension (1x10
8 CFU/ml). The inoculated fruits were placed at room temperature in a humid chamber for 10 d. Soft rot lesions were observed, which appeared at 6 days post-inoculation (DPI). The control fruits treated with sterile water did not show symptoms. Further analyses in the genome of strain A2M176 led to identify genes related to pathogenicity, such as the effector gene avrE and the regulator gen HrpL, suggesting the pathogenic capacity of the strain. Also, there were identify genes of two known Pseudomonas copper resistance mechanisms, the cus and cop operon. These genes were found part of the copABCDns cluster similar to what was observed in Pseudomonas from Mango. Presence of P. viridiflava strains causing fruit rot in P. avium is not surprising, since P. viridiflava has a wide host range and causes a variety of symptoms in different plant parts, including stems, leaves, and blossoms. P. viridiflava represents one of the multiple phylogroups found within the P. syringae species complex. To our knowledge, this is the first report of a strain of P. viridiflava copper resistant causing infection on sweet cherries in Chile.- Published
- 2022
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22. Draft Genome Sequence of Pseudomonas sp. Strain RGM 3321, a Phyllosphere Endophyte from Fragaria chiloensis subsp. chiloensis f. patagonica .
- Author
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Castro JF, Guerra M, Carrasco-Fernández J, Ortiz-Campos J, Cares-Gatica D, Campos-Quiroz C, Correa F, Beltrán MF, Sagredo B, and Valdés JH
- Abstract
Pseudomonas sp. strain RGM 3321 is a phyllosphere endophyte from Fragaria chiloensis subsp. chiloensis f. patagonica that harbors genes associated with plant growth promotion pathways, as well as genes typically found in plant pathogens.
- Published
- 2022
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23. Differential Phenolic Compounds and Hormone Accumulation Patterns between Early- and Mid-Maturing Sweet Cherry ( Prunus avium L.) Cultivars during Fruit Development and Ripening.
- Author
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Ponce C, Kuhn N, Arellano M, Time A, Multari S, Martens S, Carrera E, Sagredo B, Donoso JM, and Meisel LA
- Subjects
- Anthocyanins, Fruit, Hormones, Tandem Mass Spectrometry, Prunus avium
- Abstract
Color acquisition is one of the most distinctive features of fruit development and ripening processes. The color red is closely related to the accumulation of polyphenolic compounds, mainly anthocyanins, during sweet cherry fruit maturity. In non-climacteric fruit species like sweet cherry, the maturity process is mainly controlled by the phytohormone abscisic acid (ABA), though other hormones may also play a role. However, the coordinated stage-specific production of polyphenolic compounds and their relation with hormone content variations have not been studied in depth in sweet cherry fruits. To further understand the accumulation dynamics of these compounds (hormones and metabolites) during fruit development, two sweet cherry cultivars ("Lapins" and "Glenred") with contrasting maturity timing phenotypes were analyzed using targeted metabolic analysis. The ultra-high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) approach revealed that phenolic acids, flavonols, and flavan-3-ols accumulated mainly until the straw-yellow stage in the early-maturing cultivar, while accumulation was mainly at the green stage in the mid-maturing cultivar, suggesting a cultivar-dependent stage-specific production of secondary metabolites. In the mid-maturing cultivar, anthocyanins were detected only from the red stage onward, whereas detection began at the pink stage in the early-maturing cultivar. ABA negatively correlated ( p -value < 0.05) with the flavonols and flavan-3-ols in both cultivars. ABA and anthocyanin content increased at the same time in the early-season cultivar. In contrast, anthocyanins accumulated and the pink color initiation started several days after the ABA increase in the mid-maturing cultivar. Differential accumulation patterns of GA
4 , a ripening antagonizing hormone, between the cultivars could explain this difference. These results showed that both red-colored cultivars presented different accumulation dynamics of phenolic compounds and plant hormones during fruit development, suggesting underlying differences in the sweet cherry fruit color evolution.- Published
- 2021
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24. RNAseq reveals different transcriptomic responses to GA 3 in early and midseason varieties before ripening initiation in sweet cherry fruits.
- Author
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Kuhn N, Maldonado J, Ponce C, Arellano M, Time A, Multari S, Martens S, Carrera E, Donoso JM, Sagredo B, and Meisel LA
- Subjects
- Agriculture methods, Anthocyanins metabolism, Base Sequence genetics, Fruit genetics, Gene Expression genetics, Gene Expression Profiling methods, Gene Expression Regulation, Plant genetics, Gibberellins pharmacology, Indoleacetic Acids metabolism, Plant Growth Regulators metabolism, Plant Proteins genetics, Prunus avium metabolism, Sequence Analysis, RNA methods, Transcription Factors metabolism, Transcriptome genetics, Gibberellins metabolism, Prunus avium genetics
- Abstract
Gibberellin (GA) negatively affects color evolution and other ripening-related processes in non-climacteric fruits. The bioactive GA, gibberellic acid (GA
3 ), is commonly applied at the light green-to-straw yellow transition to increase firmness and delay ripening in sweet cherry (Prunus avium L.), though causing different effects depending on the variety. Recently, we reported that GA3 delayed the IAD parameter (a ripening index) in a mid-season variety, whereas GA3 did not delay IAD but reduced it at ripeness in an early-season variety. To further explore this contrasting behavior between varieties, we analyzed the transcriptomic responses to GA3 applied on two sweet cherry varieties with different maturity time phenotypes. At harvest, GA3 produced fruits with less color in both varieties. Similar to our previous report, GA3 delayed fruit color initiation and IAD only in the mid-season variety and reduced IAD at harvest only in the early-season variety. RNA-seq analysis of control- and GA3 -treated fruits revealed that ripening-related categories were overrepresented in the early-season variety, including 'photosynthesis' and 'auxin response'. GA3 also changed the expression of carotenoid and abscisic acid (ABA) biosynthetic genes in this variety. In contrast, overrepresented categories in the mid-season variety were mainly related to metabolic processes. In this variety, some PP2Cs putative genes were positively regulated by GA3 , which are negative regulators of ABA responses, and MYB44-like genes (putative repressors of PP2Cs expression) were downregulated. These results show that GA3 differentially modulates the transcriptome at the onset of ripening in a variety-dependent manner and suggest that GA3 impairs ripening through the modification of ripening associated gene expression only in the early-season variety; whereas in the mid-season variety, control of the ripening timing may occur through the PP2C gene expression regulation. This work contributes to the understanding of the role of GA in non-climacteric fruit ripening.- Published
- 2021
- Full Text
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25. Evaluation of fluopyram for management of Meloidogyne ethiopica and migratory nematodes in commercial tomato greenhouses in the Metropolitan Region of Chile.
- Author
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Meza P, Elgueta S, and Sagredo B
- Subjects
- Animals, Benzamides, Chile, Pyridines, Solanum lycopersicum, Tylenchoidea
- Abstract
Background: The nematicidal effects of fluopyram were evaluated for the suppression of Meloidogyne ethiopica and migratory nematodes, Xiphinema americanum s. l., Hemicycliophora spp. and Pratylenchus spp., in two commercial tomato greenhouses in Chile. The effects of fluopyram on plant-parasitic nematodes, plant vigor and fruit yield were determined., Results: Fluopyram demonstrated good potential for the management of M. ethiopica and migratory nematodes, especially during the early stages of evaluation (30-60 days after planting). There were also improvements in vigor of treated plants. A general trend in improved fruit quality was also observed, however, no significant differences in total yield were found between treatments., Conclusions: Our study is one of the first evaluations of fluopyram under field conditions against M. ethiopica. The findings suggest that this new nematicide has good potential for the management of M. ethiopica and some migratory nematodes in tomatoes cropped in greenhouses in the Metropolitan Region of Chile. © 2021 Society of Chemical Industry., (© 2021 Society of Chemical Industry.)
- Published
- 2021
- Full Text
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26. Prunus Hexokinase 3 genes alter primary C-metabolism and promote drought and salt stress tolerance in Arabidopsis transgenic plants.
- Author
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Pérez-Díaz J, Batista-Silva W, Almada R, Medeiros DB, Arrivault S, Correa F, Bastías A, Rojas P, Beltrán MF, Pozo MF, Araújo WL, and Sagredo B
- Subjects
- Amino Acid Sequence, Arabidopsis genetics, Hexokinase chemistry, Hypoxia metabolism, Plants, Genetically Modified, Promoter Regions, Genetic, Sequence Homology, Amino Acid, Arabidopsis physiology, Hexokinase genetics, Prunus genetics, Salt Tolerance genetics
- Abstract
Hexokinases (HXKs) and fructokinases (FRKs) are the only two families of enzymes in plants that have been identified as able to phosphorylate Glucose (Glc) and Fructose (Fru). Glc can only be phosphorylated in plants by HXKs, while Fru can be phosphorylated by either HXKs or FRKs. The various subcellular localizations of HXKs in plants indicate that they are involved in diverse functions, including anther dehiscence and pollen germination, stomatal closure in response to sugar levels, stomatal aperture and reducing transpiration. Its association with modulating programmed cell death, and responses to oxidative stress and pathogen infection (abiotic and biotic stresses) also have been reported. To extend our understanding about the function of HXK-like genes in the response of Prunus rootstocks to abiotic stress, we performed a detailed bioinformatic and functional analysis of hexokinase 3-like genes (HXK3s) from two Prunus rootstock genotypes, 'M.2624' (Prunus cerasifera Ehrh × P. munsoniana W.Wight & Hedrick) and 'M.F12/1' (P. avium L.), which are tolerant and sensitive to hypoxia stress, respectively. A previous large-scale transcriptome sequencing of roots of these rootstocks, showed that this HXK3-like gene that was highly induced in the tolerant genotype under hypoxia conditions. In silico analysis of gene promoters from M.2624 and M.F12/1 genotypes revealed regulatory elements that could explain differential transcriptional profiles of HXK3 genes. Subcellular localization was determinates by both bioinformatic prediction and expression of their protein fused to the green fluorescent protein (GFP) in protoplasts and transgenic plants of Arabidopsis. Both approaches showed that they are expressed in plastids. Metabolomics analysis of Arabidopsis plants ectopically expressing Prunus HXK3 genes revealed that content of several metabolites including phosphorylated sugars (G6P), starch and some metabolites associated with the TCA cycle were affected. These transgenic Arabidopsis plants showed improved tolerance to salt and drought stress under growth chamber conditions. Our results suggest that Prunus HXK3 is a potential candidate for enhancing tolerance to salt and drought stresses in stone fruit trees and other plants.
- Published
- 2021
- Full Text
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27. Gibberellic Acid Modifies the Transcript Abundance of ABA Pathway Orthologs and Modulates Sweet Cherry ( Prunus avium ) Fruit Ripening in Early- and Mid-Season Varieties.
- Author
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Kuhn N, Ponce C, Arellano M, Time A, Sagredo B, Donoso JM, and Meisel LA
- Abstract
Several phytohormones modulate ripening in non-climacteric fruits, which is triggered by abscisic acid (ABA). Gibberellins (GAs) are present during the onset of ripening in sweet cherry fruits, and exogenous gibberellic acid (GA
3 ) application delays ripening, though this effect is variety-dependent. Although an ABA accumulation delay has been reported following GA3 treatment, the mechanism by which GA modulates this process has not been investigated at the molecular level in sweet cherry. Therefore, the aim of this work is to analyze the effect of GA3 on the fruit ripening process and the transcript levels of ABA pathway orthologs in two varieties having different maturity time phenotypes. The early-season variety had a rapid transition from yellow to pink fruit color, whereas pink color initiation took longer in the mid-season variety. GA3 increased the proportion of lighter colored fruits at ripeness in both varieties, but it produced a delay in IAD-a ripening index-only in the mid-season variety. This delay was accompanied by an increased transcript abundance of PavPP2Cs , which are putative negative regulators of the ABA pathway. On the other hand, the early-season variety had increased expression of PavCYP707A2 -a putative ABA catabolic gene-, and reduced transcript levels of PavPP2Cs and SnRK2s after the GA3 treatment. Together these results show that GA modulates fruit ripening, exerting its action in part by interacting with the ABA pathway in sweet cherry.- Published
- 2020
- Full Text
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28. Identifying and validating housekeeping hybrid Prunus spp. genes for root gene-expression studies.
- Author
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Bastias A, Oviedo K, Almada R, Correa F, and Sagredo B
- Subjects
- Gene Expression Profiling, Genes, Essential genetics, Plant Roots genetics, Prunus genetics
- Abstract
Prunus rootstock belonging to subgenera Amygdalus (peach), Prunus (plum) and Cerasus (cherry) are either from the same species as the scion or another one. The number of inter-species (including inter-subgenera) hybrids has increased as a result of broadening the genetic basis for stress (biotic and abiotic) resistance/tolerance. Identifying genes associated with important traits and responses requires expression analysis. Relative quantification is the simplest and most popular alternative, which requires reference genes (housekeeping) to normalize RT-qPCR data. However, there is a scarcity of validated housekeeping genes for hybrid Prunus rootstock species. This research aims to increase the number of housekeeping genes suitable for Prunus rootstock expression analysis. Twenty-one candidate housekeeping genes were pre-selected from previous RNAseq data that compared the response of root transcriptomes of two rootstocks subgenera to hypoxia treatment, 'Mariana 2624' (P. cerasifera Ehrh.× P. munsoniana W. Wight & Hedrick), and 'Mazzard F12/1' (P. avium L.). Representing groups of low, intermediate or high levels of expression, the genes were assayed by RT-qPCR at 72 hours of hypoxia treatment and analyzed with NormFinder software. A sub-set of seven housekeeping genes that presented the highest level of stability were selected, two with low levels of expression (Unknown 3, Unknown 7) and five with medium levels (GTB 1, TUA 3, ATPase P, PRT 6, RP II). The stability of these genes was evaluated under different stress conditions, cold and heat with the hybrid 'Mariana 2624' and N nutrition with the hybrids 'Colt' (P. avium × P. pseudocerasus Lindl.) and 'Garnem' [P. dulcis Mill.× (P. persica L.× P. davidiana Carr.)]. The algorithms of geNorm and BestKeeper software also were used to analyze the performance of these genes as housekeepers. Stability rankings varied according to treatments, genotypes and the software for evaluation, but the gene GBT 1 often had the highest ranking. However, most of the genes are suitable depending on the stressor and/or genotype to be evaluated. No optimal number of reference genes could be determined with geNorm software when all conditions and genotypes were considered. These results strongly suggest that relative RT-qPCR should be analyzed separately with their respective best housekeeper according to the treatment and/or genotypes in Prunus spp. rootstocks., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
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29. Comparative transcriptomic analysis reveals novel roles of transcription factors and hormones during the flowering induction and floral bud differentiation in sweet cherry trees (Prunus avium L. cv. Bing).
- Author
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Villar L, Lienqueo I, Llanes A, Rojas P, Perez J, Correa F, Sagredo B, Masciarelli O, Luna V, and Almada R
- Subjects
- Abscisic Acid metabolism, Cytokinins metabolism, Flowers genetics, Flowers growth & development, Flowers metabolism, Gene Expression Regulation, Plant, Gene Library, Gene Regulatory Networks, Indoleacetic Acids metabolism, Phylogeny, Plant Leaves genetics, Plant Leaves metabolism, Plant Proteins classification, Plant Proteins genetics, Principal Component Analysis, Prunus avium growth & development, Prunus avium metabolism, RNA-Seq, Transcription Factors classification, Transcription Factors genetics, Gene Expression Profiling methods, Plant Proteins metabolism, Prunus avium genetics, Transcription Factors metabolism
- Abstract
In sweet cherry trees, flowering is commercially important because the flowers, after fertilization, will generate the fruits. In P. avium, the flowering induction and flower organogensis are the first developmental steps towards flower formation and they occur within specialized organs known as floral buds during the summer, nine months before blooming. During this period the number of floral buds per tree and the bud fruitfulness (number of flowers per bud) are stablished affecting the potential yield of orchards and the plant architecture. The floral bud development is sensitive to any type of stress and the hotter and drier summers will interfere with this process and are calling for new adapted cultivars. A better understanding of the underlying molecular and hormonal mechanisms would be of help, but unlike the model plant Arabidopsis, very little is known about floral induction in sweet cherry. To explore the molecular mechanism of floral bud differentiation, high-throughput RNA sequencing was used to detect differences in the gene expression of P. avium floral buds at five differentiation stages. We found 2,982 differentially expressed genes during floral bud development. We identified genes associated with floral initiation or floral organ identity that appear to be useful biomarkers of floral development and several transcription factor families (ERF, MYB, bHLH, MADS-box and NAC gene family) with novel potential roles during floral transition in this species. We analyzed in deep the MADS-box gene family and we shed light about their key role during floral bud and organs development in P. avium. Furthermore, the hormonal-related signatures in the gene regulatory networks and the dynamic changes of absicic acid, zeatin and indolacetic acid contents in buds suggest an important role for these hormones during floral bud differentiation in sweet cherry. These data provide a rich source of novel informacion for functional and evolutionary studies about floral bud development in sweet cherry and new tools for biotechnology and breeding., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
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30. Draft genome sequence data of maqui (Aristotelia chilensis) and identification of SSR markers.
- Author
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Bastías A, Correa F, Rojas P, Martin C, Pérez-Diaz J, Yáñez C, Cuevas M, Verdugo R, and Sagredo B
- Abstract
Maqui ( Aristotelia chilensis [Molina] Stunz) is a small dioecious tree, belonging to the Elaeocarpaceae family. Maqui fruit has high levels of antioxidant activity, which are due to elevated anthocyanin and polyphenol content. Here we describe a draft genome sequence data of maqui ( A. chilensis ). The genomic sequence datasets were obtained using Illumina NextSeq platform. Nucleotide sequences of raw reads and the assembled draft genome are available at NCBI's Sequence Read Archive as BioProject PRJNA544858. Also, a total of 210067 microsatellite or simple sequence repeat (SSR) markers were identified., (© 2019 The Authors.)
- Published
- 2019
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31. Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola .
- Author
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Correa F, Pérez-Díaz J, Rojas P, Torres C, Paneque M, Sagredo B, and Bastías A
- Abstract
In this work, we partially sequenced genomes of two Atriplex species ( A. deserticola Phil. and A. atacamensis Phil.), using Illumina technology (Hiseq 2500 paired-end system) and de novo assembly strategy. Raw data of A. deserticola and A. atacamensis are available from NCBI-Bioproject, PRJNA495747 and PRJNA495763 accessions, respectively. A total of 127086 and 134984 microsatellite or simple sequence repeat (SSR) markers were identified within A. deserticola and A. atacamensis genomic DNA, respectively. In addition, predicted putative genes in A. deserticola and A. atacamensis sequences are also presented in this article.
- Published
- 2019
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32. Identification and Characterization of Microsatellite Loci in Maqui (Aristotelia chilensis [Molina] Stunz) Using Next-Generation Sequencing (NGS).
- Author
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Bastías A, Correa F, Rojas P, Almada R, Muñoz C, and Sagredo B
- Subjects
- Genotype, High-Throughput Nucleotide Sequencing, Polymorphism, Genetic, Sequence Analysis, DNA, Dinucleotide Repeats, Elaeocarpaceae genetics, Trinucleotide Repeats
- Abstract
Maqui (Aristotelia chilensis [Molina] Stunz) is a small dioecious tree native to South America with edible fruit characterized by very high antioxidant capacity and anthocyanin content. To preserve maqui as a genetic resource it is essential to study its genetic diversity. However, the complete genome is unknown and only a few gene sequences are available in databases. Simple sequence repeats (SSR) markers, which are neutral, co-dominant, reproducible and highly variable, are desirable to support genetic studies in maqui populations. By means of identification and characterization of microsatellite loci from a maqui genotype, using 454 sequencing technology, we develop a set of SSR for this species. Obtaining a total of 165,043 shotgun genome sequences, with an average read length of 387 bases, we covered 64 Mb of the maqui genome. Reads were assembled into 4,832 contigs, while 98,546 reads remained as singletons, generating a total of 103,378 consensus genomic sequences. A total of 24,494 SSR maqui markers were identified. Of them, 15,950 SSR maqui markers were classified as perfects. The most common SSR motifs were dinucleotide (31%), followed by tetranucleotide (26%) and trinucleotide motifs (24%). The motif AG/CT (28.4%) was the most abundant, while the motif AC (89 bp) was the largest. Eleven polymorphic SSRs were selected and used to analyze a population of 40 maqui genotypes. Polymorphism information content (PIC) ranged from 0.117 to 0.82, with an average of 0.58. Non-significant groups were observed in the maqui population, showing a panmictic genetic structure. In addition, we also predicted 11150 putative genes and 3 microRNAs (miRNAs) in maqui sequences. This results, including partial sequences of genes, some miRNAs and SSR markers from high throughput next generation sequencing (NGS) of maqui genomic DNA, constitute the first platform to undertake genetic and molecular studies of this important species.
- Published
- 2016
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33. Construction of High Density Sweet Cherry (Prunus avium L.) Linkage Maps Using Microsatellite Markers and SNPs Detected by Genotyping-by-Sequencing (GBS).
- Author
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Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, and Hinrichsen P
- Subjects
- Chromosome Segregation genetics, Genes, Plant, Genomics, Physical Chromosome Mapping, Chromosome Mapping methods, Genetic Linkage, Genotyping Techniques methods, Microsatellite Repeats genetics, Polymorphism, Single Nucleotide genetics, Prunus avium genetics, Sequence Analysis, DNA methods
- Abstract
Linkage maps are valuable tools in genetic and genomic studies. For sweet cherry, linkage maps have been constructed using mainly microsatellite markers (SSRs) and, recently, using single nucleotide polymorphism markers (SNPs) from a cherry 6K SNP array. Genotyping-by-sequencing (GBS), a new methodology based on high-throughput sequencing, holds great promise for identification of high number of SNPs and construction of high density linkage maps. In this study, GBS was used to identify SNPs from an intra-specific sweet cherry cross. A total of 8,476 high quality SNPs were selected for mapping. The physical position for each SNP was determined using the peach genome, Peach v1.0, as reference, and a homogeneous distribution of markers along the eight peach scaffolds was obtained. On average, 65.6% of the SNPs were present in genic regions and 49.8% were located in exonic regions. In addition to the SNPs, a group of SSRs was also used for construction of linkage maps. Parental and consensus high density maps were constructed by genotyping 166 siblings from a 'Rainier' x 'Rivedel' (Ra x Ri) cross. Using Ra x Ri population, 462, 489 and 985 markers were mapped into eight linkage groups in 'Rainier', 'Rivedel' and the Ra x Ri map, respectively, with 80% of mapped SNPs located in genic regions. Obtained maps spanned 549.5, 582.6 and 731.3 cM for 'Rainier', 'Rivedel' and consensus maps, respectively, with an average distance of 1.2 cM between adjacent markers for both 'Rainier' and 'Rivedel' maps and of 0.7 cM for Ra x Ri map. High synteny and co-linearity was observed between obtained maps and with Peach v1.0. These new high density linkage maps provide valuable information on the sweet cherry genome, and serve as the basis for identification of QTLs and genes relevant for the breeding of the species.
- Published
- 2015
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34. Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps.
- Author
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Sharma SK, Bolser D, de Boer J, Sønderkær M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS, Eguiluz M, Guo X, Guzman F, Hackett CA, Hamilton JP, Li G, Li Y, Lozano R, Maass A, Marshall D, Martinez D, McLean K, Mejía N, Milne L, Munive S, Nagy I, Ponce O, Ramirez M, Simon R, Thomson SJ, Torres Y, Waugh R, Zhang Z, Huang S, Visser RG, Bachem CW, Sagredo B, Feingold SE, Orjeda G, Veilleux RE, Bonierbale M, Jacobs JM, Milbourne D, Martin DM, and Bryan GJ
- Subjects
- Biomarkers metabolism, Chromosomes, Plant metabolism, Genome, Plant, Internet, User-Computer Interface, Chromosome Mapping standards, Chromosomes, Plant genetics, Solanum tuberosum genetics
- Abstract
The genome of potato, a major global food crop, was recently sequenced. The work presented here details the integration of the potato reference genome (DM) with a new sequence-tagged site marker-based linkage map and other physical and genetic maps of potato and the closely related species tomato. Primary anchoring of the DM genome assembly was accomplished by the use of a diploid segregating population, which was genotyped with several types of molecular genetic markers to construct a new ~936 cM linkage map comprising 2469 marker loci. In silico anchoring approaches used genetic and physical maps from the diploid potato genotype RH89-039-16 (RH) and tomato. This combined approach has allowed 951 superscaffolds to be ordered into pseudomolecules corresponding to the 12 potato chromosomes. These pseudomolecules represent 674 Mb (~93%) of the 723 Mb genome assembly and 37,482 (~96%) of the 39,031 predicted genes. The superscaffold order and orientation within the pseudomolecules are closely collinear with independently constructed high density linkage maps. Comparisons between marker distribution and physical location reveal regions of greater and lesser recombination, as well as regions exhibiting significant segregation distortion. The work presented here has led to a greatly improved ordering of the potato reference genome superscaffolds into chromosomal "pseudomolecules".
- Published
- 2013
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35. Genome sequence and analysis of the tuber crop potato.
- Author
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Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, Orjeda G, Guzman F, Torres M, Lozano R, Ponce O, Martinez D, De la Cruz G, Chakrabarti SK, Patil VU, Skryabin KG, Kuznetsov BB, Ravin NV, Kolganova TV, Beletsky AV, Mardanov AV, Di Genova A, Bolser DM, Martin DM, Li G, Yang Y, Kuang H, Hu Q, Xiong X, Bishop GJ, Sagredo B, Mejía N, Zagorski W, Gromadka R, Gawor J, Szczesny P, Huang S, Zhang Z, Liang C, He J, Li Y, He Y, Xu J, Zhang Y, Xie B, Du Y, Qu D, Bonierbale M, Ghislain M, Herrera Mdel R, Giuliano G, Pietrella M, Perrotta G, Facella P, O'Brien K, Feingold SE, Barreiro LE, Massa GA, Diambra L, Whitty BR, Vaillancourt B, Lin H, Massa AN, Geoffroy M, Lundback S, DellaPenna D, Buell CR, Sharma SK, Marshall DF, Waugh R, Bryan GJ, Destefanis M, Nagy I, Milbourne D, Thomson SJ, Fiers M, Jacobs JM, Nielsen KL, Sønderkær M, Iovene M, Torres GA, Jiang J, Veilleux RE, Bachem CW, de Boer J, Borm T, Kloosterman B, van Eck H, Datema E, Hekkert Bt, Goverse A, van Ham RC, and Visser RG
- Subjects
- Evolution, Molecular, Gene Duplication, Gene Expression Regulation, Plant, Genes, Plant genetics, Genetic Variation, Haplotypes genetics, Heterozygote, Homozygote, Immunity, Innate, Inbreeding, Molecular Sequence Annotation, Molecular Sequence Data, Plant Diseases genetics, Ploidies, Solanum tuberosum physiology, Genome, Plant genetics, Genomics, Solanum tuberosum genetics
- Abstract
Potato (Solanum tuberosum L.) is the world's most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop., (©2011 Macmillan Publishers Limited. All rights reserved)
- Published
- 2011
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36. A QTL that confers resistance to Colorado potato beetle (Leptinotarsa decemlineata [Say]) in tetraploid potato populations segregating for leptine.
- Author
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Sagredo B, Balbyshev N, Lafta A, Casper H, and Lorenzen J
- Subjects
- Animals, Chromosome Mapping, Chromosomes, Plant, Colorado, Genes, Plant, Insect Control, Coleoptera growth & development, Polyploidy, Quantitative Trait Loci, Solanaceous Alkaloids genetics, Solanum genetics
- Abstract
Genetic resistance to Colorado potato beetle (Leptinotarsa decemlineata [Say]) from Solanum chacoense has been incorporated in the tetraploid potato selection, ND4382-19, which is highly resistant and contains moderate level of foliar leptines. We recently reported using ND4382-19 progeny, population ND5873 (ND4382-19 x Chipeta), to map two genes that segregated as complementary epistatic genes that allow accumulation of leptinidine (Lep) and acetyl-leptinidine (AL) on chromosomes 2 and 8, respectively. We describe here the characterization of a second half-sib population NDG116 (ND4382-19 x N142-72). In this population, solasodine from parent N142-72, which has Solanum berthaultii in its background, was predominant over solanidine-based alkaloids. Concentrations of solanidine, leptinidine, and acetyl-leptinidine were 15-, 5-, and 14-fold lower than in the ND5873 population. Nevertheless, Lep and AL mapped to the same locations on chromosomes 2 and 8 of parent ND4382-19, respectively. The two populations were evaluated for resistance to Leptinotarsa in field assays, and by detached leaf assay for population NDG116. In both families, QTL analysis identified a major QTL from ND4382-19 on the distal end of chromosome 2, close to the Lep locus. The contribution of this QTL to resistance ranged from 11 to 34% for ND5873 at four field sites. Contribution to resistance from the linkage group that contains the gene AL for the accumulation of leptine was not detected. In family NDG116, the same chromosome 2 QTL was detected for field and detached leaf assays, explaining 26 and 12% of the variance for defoliation and larval development, respectively. These data may indicate another resistance mechanism besides leptine in the Leptinotarsa resistance observed in these populations.
- Published
- 2009
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37. Resistant potato selections contain leptine and inhibit development of the Colorado potato beetle (Coleoptera: Chrysomelidae).
- Author
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Lorenzen JH, Balbyshev NF, Lafta AM, Casper H, Tian X, and Sagredo B
- Subjects
- Animals, Coleoptera metabolism, Larva growth & development, Larva metabolism, Solanaceous Alkaloids analysis, Solanum tuberosum chemistry, Solanum tuberosum genetics, Coleoptera growth & development, Pest Control, Biological methods, Solanaceous Alkaloids metabolism, Solanum tuberosum metabolism
- Abstract
We recently described a new source of host-plant resistance to the Colorado potato beetle, Leptinotarsa decemlineata (Say), in a tetraploid potato (Solanum tuberosum L.) selection, ND2858-1. This genotype, and selected backcross progeny, had little damage while check cultivars were defoliated in open-choice field assays. To further characterize the observed deterrence, we determined foliar glycoalkaloids and conducted no-choice assays with ND2858-1 backcross progeny genotypes (ND4382-n). Development of neonate L. decemlineata in detached leaf assays on resistant progeny genotypes was delayed and larval weight gain after 4 d was inhibited by 75% relative to larval development and weight gain on susceptible genotypes. Inhibition of larval development in detached leaf assays with the selected progeny genotypes was equivalent to that of high-leptine genotypes of S. chacoense Bitter. Foliar glycoalkaloids of resistant genotypes included low levels of leptines I and II. The unlikely nature of this cross and the presence of leptine in this and resistant progeny selections cast doubt on the recorded pedigree. Molecular analyses were conducted by restriction fragment-length polymorphism and amplified fragment-length polymorphisms. Both methods established a high degree of relatedness to S. tuberososum and S. chacoense but not to S. fendleri. We conclude that ND2858-1 did not originate from a cross with S. fendleri, but is likely derived from S. chacoense. Oviposition and larval survival were reduced when adult L. decemlineata were placed in cages with resistant genotypes; an effect that was enhanced by inclusion of Perillus bioculatus F. Therefore, the nonpreference previously observed in open-choice field defoliation assays is also associated with antibiotic effects on L. decemlineata. The resistance may be caused by leptines, but is greater than would be expected by the leptine content. This source of host plant resistance could be a cost-effective management strategy, especially if combined with other resistance mechanisms or compatible control measures to delay development of resistance in the target insects.
- Published
- 2001
- Full Text
- View/download PDF
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