75 results on '"Saer Samanipour"'
Search Results
2. NORMAN guidance on suspect and non-target screening in environmental monitoring
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Juliane Hollender, Emma L. Schymanski, Lutz Ahrens, Nikiforos Alygizakis, Frederic Béen, Lubertus Bijlsma, Andrea M. Brunner, Alberto Celma, Aurelie Fildier, Qiuguo Fu, Pablo Gago-Ferrero, Ruben Gil-Solsona, Peter Haglund, Martin Hansen, Sarit Kaserzon, Anneli Kruve, Marja Lamoree, Christelle Margoum, Jeroen Meijer, Sylvain Merel, Cassandra Rauert, Pawel Rostkowski, Saer Samanipour, Bastian Schulze, Tobias Schulze, Randolph R. Singh, Jaroslav Slobodnik, Teresa Steininger-Mairinger, Nikolaos S. Thomaidis, Anne Togola, Katrin Vorkamp, Emmanuelle Vulliet, Linyan Zhu, and Martin Krauss
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Non-target screening ,Suspect screening ,High-resolution mass spectrometry ,Sample preparation ,Organic contaminants ,Chromatography ,Environmental sciences ,GE1-350 ,Environmental law ,K3581-3598 - Abstract
Abstract Increasing production and use of chemicals and awareness of their impact on ecosystems and humans has led to large interest for broadening the knowledge on the chemical status of the environment and human health by suspect and non-target screening (NTS). To facilitate effective implementation of NTS in scientific, commercial and governmental laboratories, as well as acceptance by managers, regulators and risk assessors, more harmonisation in NTS is required. To address this, NORMAN Association members involved in NTS activities have prepared this guidance document, based on the current state of knowledge. The document is intended to provide guidance on performing high quality NTS studies and data interpretation while increasing awareness of the promise but also pitfalls and challenges associated with these techniques. Guidance is provided for all steps; from sampling and sample preparation to analysis by chromatography (liquid and gas—LC and GC) coupled via various ionisation techniques to high-resolution tandem mass spectrometry (HRMS/MS), through to data evaluation and reporting in the context of NTS. Although most experience within the NORMAN network still involves water analysis of polar compounds using LC–HRMS/MS, other matrices (sediment, soil, biota, dust, air) and instrumentation (GC, ion mobility) are covered, reflecting the rapid development and extension of the field. Due to the ongoing developments, the different questions addressed with NTS and manifold techniques in use, NORMAN members feel that no standard operation process can be provided at this stage. However, appropriate analytical methods, data processing techniques and databases commonly compiled in NTS workflows are introduced, their limitations are discussed and recommendations for different cases are provided. Proper quality assurance, quantification without reference standards and reporting results with clear confidence of identification assignment complete the guidance together with a glossary of definitions. The NORMAN community greatly supports the sharing of experiences and data via open science and hopes that this guideline supports this effort.
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- 2023
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3. Studying Venom Toxin Variation Using Accurate Masses from Liquid Chromatography–Mass Spectrometry Coupled with Bioinformatic Tools
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Luis L. Alonso, Jory van Thiel, Julien Slagboom, Nathan Dunstan, Cassandra M. Modahl, Timothy N. W. Jackson, Saer Samanipour, and Jeroen Kool
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LC-MS ,snake venom ,high throughput ,data analysis ,Medicine - Abstract
This study provides a new methodology for the rapid analysis of numerous venom samples in an automated fashion. Here, we use LC-MS (Liquid Chromatography–Mass Spectrometry) for venom separation and toxin analysis at the accurate mass level combined with new in-house written bioinformatic scripts to obtain high-throughput results. This analytical methodology was validated using 31 venoms from all members of a monophyletic clade of Australian elapids: brown snakes (Pseudonaja spp.) and taipans (Oxyuranus spp.). In a previous study, we revealed extensive venom variation within this clade, but the data was manually processed and MS peaks were integrated into a time-consuming and labour-intensive approach. By comparing the manual approach to our new automated approach, we now present a faster and more efficient pipeline for analysing venom variation. Pooled venom separations with post-column toxin fractionations were performed for subsequent high-throughput venomics to obtain toxin IDs correlating to accurate masses for all fractionated toxins. This workflow adds another dimension to the field of venom analysis by providing opportunities to rapidly perform in-depth studies on venom variation. Our pipeline opens new possibilities for studying animal venoms as evolutionary model systems and investigating venom variation to aid in the development of better antivenoms.
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- 2024
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4. Per- and polyfluoroalkyl substances (PFAS) in consumer products: Current knowledge and research gaps
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Pradeep Dewapriya, Lachlan Chadwick, Sara Ghorbani Gorji, Bastian Schulze, Sara Valsecchi, Saer Samanipour, Kevin V. Thomas, and Sarit L. Kaserzon
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Consumer products ,Textiles ,Food packaging ,PFASs ,Cosmetics ,Hazardous substances and their disposal ,TD1020-1066 - Abstract
While several sources of per- and polyfluoroalkyl substances (PFAS) are known, their use in consumer household products is far less explored. The aim of this study was to provide comprehensive bottom-up analysis of the types and concentrations of PFAS reported in the literature over the past decade. A total of 52 studies revealed 107 PFAS belonging to 15 different categories in 1040 consumer products. The highest number of products tested were from the USA (n = 389) followed by the Czech Republic (n = 111). Mean PFAS concentrations were highest in household firefighting products, followed by textile finishing agents and household chemicals. The highest diversity of PFAS was reported in textiles (72 PFAS). Fluorotelomer alcohol (FTOH), polyfluoroalkyl phosphate esters (PAPs), perfluorocarboxylic acid (PFCA) and perfluorosulfonic acid (PFSA) are the classes of PFAS of high interest. Eight out of 52 studies used High-Resolution Mass Spectrometry techniques. Highlighted knowledge gaps included (i) the development of analytical methods for detecting a range of PFAS in consumer products, (ii) method validation and QA/QC approaches, (iii) application of suspect and non-target analysis, and (iv) an understanding of human exposure risk. This review highlights that the presence of PFAS in consumer products is of concern and remains underexplored.
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- 2023
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5. Predicting RP-LC retention indices of structurally unknown chemicals from mass spectrometry data
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Jim Boelrijk, Denice van Herwerden, Bernd Ensing, Patrick Forré, and Saer Samanipour
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Non-target analysis ,Retention indices ,HRMS ,Machine learning ,Information technology ,T58.5-58.64 ,Chemistry ,QD1-999 - Abstract
Abstract Non-target analysis combined with liquid chromatography high resolution mass spectrometry is considered one of the most comprehensive strategies for the detection and identification of known and unknown chemicals in complex samples. However, many compounds remain unidentified due to data complexity and limited number structures in chemical databases. In this work, we have developed and validated a novel machine learning algorithm to predict the retention index (r $$_i$$ i ) values for structurally (un)known chemicals based on their measured fragmentation pattern. The developed model, for the first time, enabled the predication of r $$_i$$ i values without the need for the exact structure of the chemicals, with an $$R^2$$ R 2 of 0.91 and 0.77 and root mean squared error (RMSE) of 47 and 67 r $$_i$$ i units for the NORMAN ( $$n=3131$$ n = 3131 ) and amide ( $$n=604$$ n = 604 ) test sets, respectively. This fragment based model showed comparable accuracy in r $$_i$$ i prediction compared to conventional descriptor-based models that rely on known chemical structure, which obtained an $$R^2$$ R 2 of 0.85 with an RMSE of 67.
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- 2023
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6. Socioeconomic status and public health in Australia: A wastewater-based study
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Nikolaos I. Rousis, Zhe Li, Richard Bade, Michael S. McLachlan, Jochen F. Mueller, Jake W. O'Brien, Saer Samanipour, Benjamin J. Tscharke, Nikolaos S. Thomaidis, and Kevin V. Thomas
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Wastewater-based epidemiology ,Metoprolol ,Atenolol acid ,Venlafaxine ,Sotalol ,Sitagliptin ,Environmental sciences ,GE1-350 - Abstract
Analysis of untreated municipal wastewater is recognized as an innovative approach to assess population exposure to or consumption of various substances. Currently, there are no published wastewater-based studies investigating the relationships between catchment social, demographic, and economic characteristics with chemicals using advanced non-targeted techniques. In this study, fifteen wastewater samples covering 27% of the Australian population were collected during a population Census. The samples were analysed with a workflow employing liquid chromatography high-resolution mass spectrometry and chemometric tools for non-target analysis. Socioeconomic characteristics of catchment areas were generated using Geospatial Information Systems software. Potential correlations were explored between pseudo-mass loads of the identified compounds and socioeconomic and demographic descriptors of the wastewater catchments derived from Census data. Markers of public health (e.g., cardiac arrhythmia, cardiovascular disease, anxiety disorder and type 2 diabetes) were identified in the wastewater samples by the proposed workflow. They were positively correlated with descriptors of disadvantage in education, occupation, marital status and income, and negatively correlated with descriptors of advantage in education and occupation. In addition, markers of polypropylene glycol (PPG) and polyethylene glycol (PEG) related compounds were positively correlated with housing and occupation disadvantage. High positive correlations were found between separated and divorced people and specific drugs used to treat cardiac arrhythmia, cardiovascular disease, and depression. Our robust non-targeted methodology in combination with Census data can identify relationships between biomarkers of public health, human behaviour and lifestyle and socio-demographics of whole populations. Furthermore, it can identify specific areas and socioeconomic groups that may need more assistance than others for public health issues. This approach complements important public health information and enables large-scale national coverage with a relatively small number of samples.
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- 2022
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7. Inter-laboratory mass spectrometry dataset based on passive sampling of drinking water for non-target analysis
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Bastian Schulze, Denice van Herwerden, Ian Allan, Lubertus Bijlsma, Nestor Etxebarria, Martin Hansen, Sylvain Merel, Branislav Vrana, Reza Aalizadeh, Bernard Bajema, Florian Dubocq, Gianluca Coppola, Aurélie Fildier, Pavla Fialová, Emil Frøkjær, Roman Grabic, Pablo Gago-Ferrero, Thorsten Gravert, Juliane Hollender, Nina Huynh, Griet Jacobs, Tim Jonkers, Sarit Kaserzon, Marja Lamoree, Julien Le Roux, Teresa Mairinger, Christelle Margoum, Giuseppe Mascolo, Emmanuelle Mebold, Frank Menger, Cécile Miège, Jeroen Meijer, Régis Moilleron, Sapia Murgolo, Massimo Peruzzo, Martijn Pijnappels, Malcolm Reid, Claudio Roscioli, Coralie Soulier, Sara Valsecchi, Nikolaos Thomaidis, Emmanuelle Vulliet, Robert Young, and Saer Samanipour
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Science - Abstract
Measurement(s) chemical • drinking water Technology Type(s) high resolution mass spectrometry • non-target analysis • Interlaboratory Factor Type(s) method Sample Characteristic - Environment laboratory environment Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.15028665
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- 2021
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8. Metabolome-Based Classification of Snake Venoms by Bioinformatic Tools
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Luis L. Alonso, Julien Slagboom, Nicholas R. Casewell, Saer Samanipour, and Jeroen Kool
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venom variation ,metabolomics ,data analysis ,script-controlled peak integration ,Medicine - Abstract
Snakebite is considered a neglected tropical disease, and it is one of the most intricate ones. The variability found in snake venom is what makes it immensely complex to study. These variations are present both in the big and the small molecules found in snake venom. This study focused on examining the variability found in the venom’s small molecules (i.e., mass range of 100–1000 Da) between two main families of venomous snakes—Elapidae and Viperidae—managing to create a model able to classify unknown samples by means of specific features, which can be extracted from their LC–MS data and output in a comprehensive list. The developed model also allowed further insight into the composition of snake venom by highlighting the most relevant metabolites of each group by clustering similarly composed venoms. The model was created by means of support vector machines and used 20 features, which were merged into 10 principal components. All samples from the first and second validation data subsets were correctly classified. Biological hypotheses relevant to the variation regarding the metabolites that were identified are also given.
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- 2023
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9. Out of sight but not out of mind: Size fractionation of plastics bioaccumulated by field deployed oysters
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Francisca Ribeiro, Elvis D. Okoffo, Jake W. O’Brien, Stacey O’Brien, Jonathan M. Harris, Saer Samanipour, Sarit Kaserzon, Jochen F. Mueller, Tamara Galloway, and Kevin V. Thomas
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FT-IR ,Py-GC/MS ,Bivalves ,Micro-nanoplastics ,Size fractionation ,Hazardous substances and their disposal ,TD1020-1066 - Abstract
Microplastics contamination has been widely reported in filter feeders yet the < 1 μm size fraction has been largely ignored. In attempt to characterize this sub 1 μm size fraction and better understand the size distribution of microplastics contamination in filter feeders, field deployed oysters were characterised using a combination of size fractionation combined with pyrolysis-gas chromatography-mass spectrometry (Py-GC/MS) as well as Fourier Transform-Infrared Spectroscopy (μFT-IR). Sequential filtration followed by Py-GC/MS identified the 1–22 μm fraction to contain the highest total plastic mass concentration (Ʃ31 mg/g), followed by the 22 μm fraction (Ʃ0.1 mg/g). μFT-IR identified 0.2 particles/g tissue but was limited to particles >150 μm in size. Our results clearly show that an important size fraction of microplastics is being overlooked in almost all studies published to date that rely on FTIR for polymer identification.
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- 2021
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10. Collision Cross Section Prediction with Molecular Fingerprint Using Machine Learning
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Fan Yang, Denice van Herwerden, Hugues Preud’homme, and Saer Samanipour
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collision cross section ,ion mobility spectrometry ,non-target screening ,machine learning ,Organic chemistry ,QD241-441 - Abstract
High-resolution mass spectrometry is a promising technique in non-target screening (NTS) to monitor contaminants of emerging concern in complex samples. Current chemical identification strategies in NTS experiments typically depend on spectral libraries, chemical databases, and in silico fragmentation tools. However, small molecule identification remains challenging due to the lack of orthogonal sources of information (e.g., unique fragments). Collision cross section (CCS) values measured by ion mobility spectrometry (IMS) offer an additional identification dimension to increase the confidence level. Thanks to the advances in analytical instrumentation, an increasing application of IMS hybrid with high-resolution mass spectrometry (HRMS) in NTS has been reported in the recent decades. Several CCS prediction tools have been developed. However, limited CCS prediction methods were based on a large scale of chemical classes and cross-platform CCS measurements. We successfully developed two prediction models using a random forest machine learning algorithm. One of the approaches was based on chemicals’ super classes; the other model was direct CCS prediction using molecular fingerprint. Over 13,324 CCS values from six different laboratories and PubChem using a variety of ion-mobility separation techniques were used for training and testing the models. The test accuracy for all the prediction models was over 0.85, and the median of relative residual was around 2.2%. The models can be applied to different IMS platforms to eliminate false positives in small molecule identification.
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- 2022
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11. Elevated Concentrations of 4‑Bromobiphenyl and 1,3,5-Tribromobenzene Found in Deep Water of Lake Geneva Based on GC×GC-ENCI-TOFMS and GC×GC-μECD
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Saer Samanipour, Petros Dimitriou-Christidis, Deedar Nabi, and J. Samuel Arey
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Chemistry ,QD1-999 - Published
- 2017
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12. National Wastewater Reconnaissance of Analgesic Consumption in Australia
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Fahad Ahmed, Benjamin Tscharke, Jake W. O’Brien, Wayne D. Hall, Peter J. Cabot, P. Marcin Sowa, Saer Samanipour, and Kevin V. Thomas
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Environmental Chemistry ,General Chemistry - Published
- 2023
13. Critical assessment of covered chemical space with LC-HRMS non-targeted analysis
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Tobias Hulleman, Viktoriia Turkina, Jake W. O’Brien, Aleksandra Chojnacka, Kevin V. Thomas, and Saer Samanipour
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Non-targeted analysis (NTA) has emerged as a valuable approach for comprehensive monitoring of chemicals of emerging concern (CECs) in the exposome. The NTA approach, theoretically, is able to identify compounds with diverse physicochemical properties and sources. Non-targeted analysis methods, even though generic and wide scoping, have been shown to have limitations in terms of their coverage of the chemical space, as the number of the identified chemicals in each sample is very low (e.g. < 5%). Investigating the chemical space covered by each NTA assay is crucial for understanding the limitations and challenges associated with the workflow from experimental methods to the data acquisition and data processing. In this review, we examined recent NTA studies published between 2017 and 2023 that employed liquid chromatography-high resolution mass spectrometry. The parameters used in each study were documented and reported chemicals at the confidence level 1 and 2 were retrieved. The chosen experimental setups and the quality of reporting were critically evaluated and discussed. The findings revealed that only around 2% of the estimated chemical space (i.e. Norman SusDat) was covered by the NTA studies investigated. Little to no trend was found between the experimental setup and the observed coverage, due to the generic and wide scope of NTA studies. The limited coverage of chemical space by the NTA studies highlights the necessity for a more comprehensive approach in experimental and data processing setups to enable the exploration of a broader range of chemical space, with the ultimate goal of protecting human and environmental health. Recommendations to further explore a wider range of the chemical space were given.
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- 2023
14. InSpectra – A Platform for Identifying Emerging Chemical Threats
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Mathieu Feraud, Jake O'Brien, Saer Samanipour, Pradeep Dewapriya, Denice van Herwerden, Sarit Kaserzon, Ian Wood, Cassandra Rauert, and Kevin Thomas
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Environmental Engineering ,Health, Toxicology and Mutagenesis ,Environmental Chemistry ,Pollution ,Waste Management and Disposal - Abstract
Non-target analysis (NTA) employing high-resolution mass spectrometry (HRMS) coupled with liquid chromatography is increasingly being used to identify chemicals of biological relevance. HRMS datasets are large and complex making the identification of potentially relevant chemicals extremely challenging. As they are recorded in vendor-specific formats, interpreting them is often reliant on vendor-specific software that may not accommodate the advancements in data processing. Here we present InSpectra, a vendor independent automated platform for the systematic detection of newly identified emerging chemical threats.InSpectra is web-based, open-source/access and modular providing highly flexible and extensible NTA and suspect screening workflows. As a cloud-based platform, InSpectra exploits parallel computing and big data archiving capabilities with a focus for sharing and community curation of HRMS data. InSpectra offers a reproducible and transparent approach for the identification, tracking and prioritisation of emerging chemical threats.
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- 2023
15. Cumulative Neutral Loss Model for Fragment Deconvolution in Electrospray Ionization High-Resolution Mass Spectrometry Data
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Denice van Herwerden, Jake O'Brien, Sascha Lege, Bob Pirok, Kevin Thomas, and Saer Samanipour
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Fragment deconvolution is a crucial step during componentization of non-targeted analysis (NTA) high-resolution mass spectrometry (HRMS) data, aiming to filter out false positive (FP) signals that do not belong to the component. Moreover, inclusion of FP fragments could lead to, for example, wrong identification further down the workflow. Commonly used methods for deconvolution of fragment signals rely on the presence of a time domain (e.g., peak apex retention time difference and correlation analysis). However, when there is no or insufficient MS2 information in the time domain, these methods are unusable and only the mass domain remains. A probability based cumulative neutral loss (CNL) model for fragment deconvolution using the mass domain information was thus developed to allow deconvolution for such cases. The optimized model, with a mass tolerance of 0.005 Da and a CNL score threshold of -0.95, was able to achieve true positive rate (TPr) of 95.0%, a false discovery rate (FDr) of 25.6%, and a reduction rate of 39.9%. Additionally, the CNL model was extensively tested on real samples containing predominantly pesticides at different concentration levels and with matrix effects. Overall, the model was able to obtain a TPr above 95% with FD rates between 45% and 77% and reduction rates between 10% and 24%. Finally, the CNL model was compared with the retention time difference method and peak shape correlation analysis, showing that a combination of correlation analysis and the CNL model was the most effective for fragment deconvolution, obtaining a TPr of 93.1%, a FDr of 57.2%, and a reduction rate of 42.6%.
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- 2023
16. Examining the Relevance of the Microplastic-Associated Additive Fraction in Environmental Compartments
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Ian John Allan, Saer Samanipour, Kyriakos Manoli, Julien Gigault, Despo Fatta-Kassinos, and Analytical Chemistry and Forensic Science (HIMS, FNWI)
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Chemistry (miscellaneous) ,Environmental Chemistry ,Chemical Engineering (miscellaneous) ,Water Science and Technology - Abstract
Plastic contamination is ubiquitous in the environment and has been related to increasing global plastic usage since the 1950s. Considering the omnipresence of additives in plastics, the risk posed by this contamination is related not only to the physical effects of plastic particles but also to their additive content. Until now, most routine environmental monitoring programs involving additives have not considered the presence of these additives still associated with the plastic they were added to during their production. Understanding environmental additive speciation is essential to address the risk they pose through their bioavailability and plastic-associated transport. Here, we present and apply a theoretical framework for sampling and analytical procedures to characterize the speciation of hydrophobic nonionized additives in environmental compartments. We show that this simple framework can help develop sampling and sample treatment procedures to quantify plastic-associated additives and understand additive distribution between plastics and organic matter. When applied to concrete cases, internal consistency checks with the model allowed for identifying plastic-associated additives in a sample. In other cases, the plastic-organic carbon ratio and additive concentration in the matrix are key factors affecting the ability to identify plastic-associated additives. The effect of additive dissipation through diffusion out of plastic particles is also considered.
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- 2022
17. Development of a comprehensive two-dimensional liquid chromatographic mass spectrometric method for the non-targeted identification of poly- and perfluoroalkyl substances in aqueous film-forming foams
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Lapo Renai, Massimo Del Bubba, Saer Samanipour, Rebecca Stafford, Andrea F.G. Gargano, HIMS Other Research (FNWI), and Analytical Chemistry and Forensic Science (HIMS, FNWI)
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Fluorocarbons ,Solvents ,Environmental Chemistry ,Water ,Cefotaxime ,Biochemistry ,Spectroscopy ,Water Pollutants, Chemical ,Mass Spectrometry ,Analytical Chemistry - Abstract
In this research, we developed an online comprehensive two-dimensional liquid chromatographic (LC × LC) method hyphenated with high-resolution mass spectrometry (HRMS) for the non-targeted identification of poly- and perfluorinated compounds (PFASs) in fire-fighting aqueous-film forming foams (AFFFs). The method exploited the combination of mixed-mode weak anion exchange-reversed phase with a octadecyl stationary phase, separating PFASs according to ionic classes and chain length. To develop and optimize the LC × LC method we used a reference training set of twenty-four anionic PFASs, representing the main classes of compounds occurring in AFFFs and covering a wide range of physicochemical properties. In particular, we investigated different modulation approaches to reduce injection band broadening and breakthrough in the second dimension separation. Active solvent and stationary phase assisted modulations were compared, with the best results obtained with the last approach. In the optimal conditions, the predicted peak capacity corrected for undersampling was higher than three-hundred in a separation space of about 60 min. Subsequently, the developed method was applied to the non-targeted analysis of two AFFF samples for the identification of homologous series of PFASs, in which it was possible to identify up to thirty-nine potential compounds of interest utilizing Kendrick mass defect analysis. Even within the samples, the features considered potential PFAS by mass defect analysis elute in the chromatographic regions discriminating for the ionic group and/or the chain length, thus confirming the applicability of the method presented for the analysis of AFFF mixtures and, to a further extent, of environmental matrices affected by the AFFF.
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- 2022
18. InSpectra – A Platform for Identifying Emerging Chemical Threats
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Mathieu Feraud, Jake O'Brien, Saer Samanipour, Pradeep Dewapriya, Denice van Herwerden, Sarit Kaserzon, Ian Wood, and Kevin Thomas
- Abstract
Non-target analysis (NTA) employing high-resolution mass spectrometry (HRMS) coupled with liquid chromatography is increasingly being used to identify chemicals of biological relevance. HRMS datasets are large and complex making the identification of potentially relevant chemicals extremely challenging. As they are recorded in vendor-specific formats, interpreting them is often reliant on vendor-specific software that may not accommodate the advancements in data processing. Here we present InSpectra, a vendor independent automated platform for the systematic detection of newly identified emerging chemical threats. InSpectra is web-based, open-source/access and modular providing highly flexible and extensible NTA and suspect screening workflows. As a cloud-based platform, InSpectra exploits parallel computing and big data archiving capabilities with a focus for sharing and community curation of HRMS data. InSpectra offers a reproducible and transparent approach for the identification, tracking and prioritisation of emerging chemical threats.
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- 2022
19. Chemometric Strategies for Fully Automated Interpretive Method Development in Liquid Chromatography
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Tijmen Bos, Jim Boelrijk, Stef Molenaar, Brian van 't Veer, Leon Niezen, Denice van Herwerden, Saer Samanipour, Dwight Stoll, Patrick Forré, Bernd Ensing, Govert Somsen, and Bob Pirok
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The great potential gains in separation power and analysis time that can result from rigorously optimizing LC-MS and 2D-LC-MS methods for routine measurements has prompted many scientists to develop computer-aided method-development tools. The applicability of these has been proven in numerous applications, but their proliferation is still limited. Arguably, the majority of LC methods are still developed in a conventional manner, i.e. by analysts who rely on their knowledge and experience. In this work, a novel, open-source algorithm was developed for automated and interpretive method development of LC separations. A closed-loop workflow was constructed that interacted directly with the LC and ran unsupervised in an automated fashion. The algorithm was tested using two newly designed strategies. The first utilized retention modeling, whereas the second used the Bayesian-optimization machine-learning approach. In both cases, the algorithm could arrive within ten iterations at an optimum of the objective function, which included resolution and measurement time. The design of the algorithm was modular, so as to facilitate compatibility with previous works in literature and its performance thus hinged on each module (e.g., signal processing, choice of retention model, objective function). Key focus areas for further improvement were identified. Bayesian optimization did not require any peak tracking or retention modeling. Accurate prediction of elution profiles was found to be indispensable for the strategy using retention modeling. This is the first interpretive algorithm demonstrated with complex samples. Peak tracking was conducted using UV-Vis absorbance detection, but use of MS detection is expected to significantly broaden the applicability of the workflow.
- Published
- 2022
20. From descriptors to intrinsic fish toxicity of chemicals: an alternative approach to chemical prioritization
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Saer Samanipour, Jake O'Brien, Malcolm Reid, Kevin Thomas, and Antonia Praetorius
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The European Chemicals Agency (ECHA) and US Environmental Protection Agency (EPA) have listed approximately 800k chemicals that must be further investigated for their potential environmental and/or human health risk. A significant number of these chemicals have large enough global volumes of consumption (e.g. industrial and agro- chemical) to reach the limits of detection of our analytical chemistry methods in en- vironmental samples, but experimental data on their environmental fate and toxicity are largely missing. Filling these data gaps experimentally for such a large number of chemicals is practically impossible, making model approaches to predict chemical property data highly relevant. However, the currently available models suffer from limited training sets, linearity and continuity assumptions. In this study we present a supervised direct classification model that directly connects the molecular descriptors of chemicals to their toxicity. As a proof of concept we used 907 experimentally defined 96h LC50 values for acute fish toxicity. Classification was performed into two typesof toxicity categories: 1) categories derived via k-means clustering from the experimental dataset and 2) hazard categories defined by the Globally Harmonized System of Classification and Labelling of Chemicals (GHS), via machine learning. Our direct classification model explained ≈ 90% of variance in our data for the training set and ≈ 80% for the test set. Direct comparison of our classification model with the conventional strategy (i.e. QSAR regression model) resulted in a 5 fold decrease in the wrong chemical categorization for our model. The optimized model was employed to predict the toxicity categories of ≈ 32k chemicals (from the Norman SusDat). Finally, a comparison between the model based applicability domain (AD) vs the training set AD was performed, suggesting that the training set based AD is a more adequate way to avoid extrapolation when using such models. The better performance of our direct classification model compared to conventionally employed QSAR methods, makes this approach a viable tool for hazard identification and risk assessment of chemicals.
- Published
- 2022
21. Instrument-independent chemometric models for rapid, calibration-free NPS isomer differentiation from mass spectral GC-MS data
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Jennifer L. Bonetti, Ruben F. Kranenburg, Esmee Schoonderwoerd, Saer Samanipour, and Arian C. van Asten
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Law ,Pathology and Forensic Medicine - Published
- 2023
22. Naive Bayes classification model for isotopologue detection in LC-HRMS data
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Denice van Herwerden, Jake W. O'Brien, Phil M. Choi, Kevin V. Thomas, Peter J. Schoenmakers, Saer Samanipour, and Analytical Chemistry and Forensic Science (HIMS, FNWI)
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Process Chemistry and Technology ,Spectroscopy ,Software ,Computer Science Applications ,Analytical Chemistry - Abstract
Isotopologue identification or removal is a necessary step to reduce the number of features that need to be identified in samples analyzed with non-targeted analysis. Currently available approaches rely on either predicted isotopic patterns or an arbitrary mass tolerance, requiring information on the molecular formula or instrumental error, respectively. Therefore, a Naive Bayes isotopologue classification model was developed that does not depend on any thresholds or molecular formula information. This classification model uses the elemental mass defects of six elemental ratios and successfully identified isotopologues for both theoretical isotopic patterns and wastewater influent samples, outperforming one of the most commonly used approaches (i.e., 1.0033 Da mass difference method - CAMERA). For the theoretical isotopologues, the classification model outperformed an “in-house” mass difference method with a true positive rate (TPr) of 99.0% and false positive rate (FPr) of 1.8% compared to a TPr of 16.2% and an FPr of 0.02%, assuming no error. As for the wastewater influent samples, the classification model, with a TPr of 99.8% and false detection rate (FDr) of 0.5%, again performed better than the mass difference method, with a TPr of 96.3% and FDr of 4.8%. Therefore, it can be concluded that the classification model can be used for isotopologue identification, requiring no thresholds or information on the molecular formula.
- Published
- 2022
23. Utilization of Machine Learning for the Differentiation of Positional NPS Isomers with Direct Analysis in Real Time Mass Spectrometry
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Jennifer L. Bonetti, Saer Samanipour, Arian C. van Asten, and Analytical Chemistry and Forensic Science (HIMS, FNWI)
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Machine Learning ,Isomerism ,Mass Spectrometry ,Analytical Chemistry - Abstract
The differentiation of positional isomers is a well established analytical challenge for forensic laboratories. As more novel psychoactive substances (NPSs) are introduced to the illicit drug market, robust yet efficient methods of isomer identification are needed. Although current literature suggests that Direct Analysis in Real Time-Time-of-Flight mass spectrometry (DART-ToF) with in-source collision induced dissociation (is-CID) can be used to differentiate positional isomers, it is currently unclear whether this capability extends to positional isomers whose only structural difference is the precise location of a single substitution on an aromatic ring. The aim of this work was to determine whether chemometric analysis of DART-ToF data could offer forensic laboratories an alternative rapid and robust method of differentiating NPS positional ring isomers. To test the feasibility of this technique, three positional isomer sets (fluoroamphetamine, fluoromethamphetamine, and methylmethcathinone) were analyzed. Using a linear rail for consistent sample introduction, the three isomers of each type were analyzed 96 times over an eight-week timespan. The classification methods investigated included a univariate approach, the Welch t test at each included ion; a multivariate approach, linear discriminant analysis; and a machine learning approach, the Random Forest classifier. For each method, multiple validation techniques were used including restricting the classifier to data that was only generated on one day. Of these classification methods, the Random Forest algorithm was ultimately the most accurate and robust, consistently achieving out-of-bag error rates below 5%. At an inconclusive rate of approximately 5%, a success rate of 100% was obtained for isomer identification when applied to a randomly selected test set. The model was further tested with data acquired as a part of a different batch. The highest classification success rate was 93.9%, and error rates under 5% were consistently achieved.
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- 2022
24. In-Sewer Stability Assessment of Anabolic Steroids and Selective Androgen Receptor Modulators
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Katja M. Shimko, Jake W. O’Brien, Jiaying Li, Benjamin J. Tscharke, Lance Brooker, Phong K. Thai, Phil M. Choi, Saer Samanipour, Kevin V. Thomas, and Analytical Chemistry and Forensic Science (HIMS, FNWI)
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Anabolic Agents ,Sewage ,Receptors, Androgen ,Environmental Chemistry ,Humans ,General Chemistry ,Wastewater ,Testosterone Congeners ,Biomarkers ,Water Pollutants, Chemical - Abstract
Wastewater-based epidemiology is a potential complementary technique for monitoring the use of performance- and image-enhancing drugs (PIEDs), such as anabolic steroids and selective androgen receptor modulators (SARMs), within the general population. Assessing in-sewer transformation and degradation is critical for understanding uncertainties associated with wastewater analysis. An electrospray ionization liquid chromatography mass spectrometry method for the quantification of 59 anabolic agents in wastewater influent was developed. Limits of detection and limits of quantification ranged from 0.004 to 1.56 μg/L and 0.01 to 4.75 μg/L, respectively. Method performance was acceptable for linearity (R2 > 0.995, few exceptions), accuracy (68-119%), and precision (1-21%RSD), and applicability was successfully demonstrated. To assess the stability of the selected biomarkers in wastewater, we used laboratory-scale sewer reactors to subject the anabolic agents to simulated realistic sewer environments for 12 h. Anabolic agents, including parent compounds and metabolites, were spiked into freshly collected wastewater that was then fed into three sewer reactor types: control sewer (no biofilm), gravity sewer (aerobic conditions), and rising main sewer (anaerobic conditions). Our results revealed that while most glucuronide conjugates were completely transformed following 12 h in the sewer reactors, 50% of the investigated biomarkers had half-lives longer than 4 h (mean residence time) under gravity sewer conditions. Most anabolic agents were likely subject to biofilm sorption and desorption. These novel results lay the groundwork for any future wastewater-based epidemiology research involving anabolic steroids and SARMs.
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- 2022
25. From Molecular Descriptors to Intrinsic Fish Toxicity of Chemicals: An Alternative Approach to Chemical Prioritization
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Saer Samanipour, Jake W. O’Brien, Malcolm J. Reid, Kevin V. Thomas, and Antonia Praetorius
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Environmental Chemistry ,General Chemistry - Abstract
The European and U.S. chemical agencies have listed approximately 800k chemicals about which knowledge of potential risks to human health and the environment is lacking. Filling these data gaps experimentally is impossible, so in silico approaches and prediction are essential. Many existing models are however limited by assumptions (e.g., linearity and continuity) and small training sets. In this study, we present a supervised direct classification model that connects molecular descriptors to toxicity. Categories can be driven by either data (using k-means clustering) or defined by regulation. This was tested via 907 experimentally defined 96 h LC50 values for acute fish toxicity. Our classification model explained ≈90% of the variance in our data for the training set and ≈80% for the test set. This strategy gave a 5-fold decrease in the frequency of incorrect categorization compared to a quantitative structure–activity relationship (QSAR) regression model. Our model was subsequently employed to predict the toxicity categories of ≈32k chemicals. A comparison between the model-based applicability domain (AD) and the training set AD was performed, suggesting that the training set-based AD is a more adequate way to avoid extrapolation when using such models. The better performance of our direct classification model compared to that of QSAR methods makes this approach a viable tool for assessing the hazards and risks of chemicals.
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- 2022
26. From descriptors to intrinsic fate and toxicity of chemicals: an alternative approach to chemical prioritization
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Saer Samanipour, J W O'brien, M J Reid, K V Thomas, and A Praetorius
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- 2022
- Full Text
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27. Naive Bayes classification model for isotopologue detection in LC-HRMS data
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Denice van Herwerden, Jake O'Brien, Phil Choi, Kevin Thomas, Peter Schoenmakers, and Saer Samanipour
- Abstract
Isotopologue identification or removal is a necessary step to reduce the number of features that need to be identified in samples analyzed with non-targeted analysis. Currently available approaches rely on either predicted isotopic patterns or an arbitrary mass tolerance, requiring information on the molecular formula or instrumental error, respectively. Therefore, a Naive Bayes isotopologue classification model was developed that does not depend on any thresholds or molecular formula information. This classification model uses elemental mass defects of six elemental ratios and can successfully identify isotopologues in both theoretical isotopic patterns and wastewater influent samples, outperforming one of the most commonly used approaches (i.e., 1.0033 Da mass difference method - CAMERA).
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- 2021
28. In-sewer stability of selected analgesics and their metabolites
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Benjamin J. Tscharke, Jochen F. Mueller, Zhiguo Yuan, Fahad Ahmed, Phong K. Thai, Jiaying Li, Saer Samanipour, Jake W. O'Brien, Kevin V. Thomas, and HIMS Other Research (FNWI)
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Ketoprofen ,Environmental Engineering ,Diclofenac ,0207 environmental engineering ,Carboxylic Acids ,Ibuprofen ,02 engineering and technology ,010501 environmental sciences ,Pharmacology ,Piroxicam ,01 natural sciences ,Parecoxib ,medicine ,020701 environmental engineering ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Water Science and Technology ,Civil and Structural Engineering ,Analgesics ,Chemistry ,Ecological Modeling ,Hydromorphone ,Valdecoxib ,Pollution ,6. Clean water ,Oxymorphone ,Etoricoxib ,medicine.drug - Abstract
Understanding the in-sewer stability of analgesic biomarkers is important for interpreting wastewater-based epidemiology (WBE) data to estimate community-wide analgesic drugs consumption. The in-sewer stability of a suite of 19 analgesics and their metabolites was assessed using lab-scale sewer reactors. Target biomarkers were spiked into wastewater circulating in simulated gravity, rising main and control (no biofilm) sewer reactors. In-sewer transformation was observed over a hydraulic retention time of 12 h. All investigated biomarkers were stable under control reactor conditions. In gravity sewer conditions, diclofenac, desmetramadol, ibuprofen carboxylic acid, ketoprofen, lidocaine and tapentadol were highly stable (0–20% transformation in 12 h). Valdecoxib, parecoxib, etoricoxib, indomethacin, naltrexone, naloxone, piroxicam, ketoprofen, lidocaine, tapentadol, oxymorphone, hydrocodone, meperidine, hydromorphone were considered as moderately stable biomarkers (20–50% transformation in 12 h). Celecoxib and sulindac were considered unstable biomarkers (>50% transformation in 12 h). Ketoprofen, lidocaine, tapentadol, meperidine, hydromorphone were transformed to 0–20% whereas diclofenac, desmetramadol, ibuprofen carboxylic acid, valdecoxib, parecoxib, etoricoxib, indomethacin, naltrexone, piroxicam were transformed up to 20–50% in 12 h in rising main reactor (RMR). These biomarkers were considered as highly stable and stable biomarkers in RMR, respectively. Sulindac, celecoxib, naloxone, oxymorphone and hydrocodone were transformed more than 50% in 12 h and considered as unstable biomarkers in RMR. This study provides the information for a better understanding of the in-sewer loss of the analgesics before using them in WBE biomarkers for estimating drug loads at the population level.
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- 2021
29. Chemometric Strategies for Fully Automated Interpretive Method Development in Liquid Chromatography
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Tijmen S. Bos, Jim Boelrijk, Stef R. A. Molenaar, Brian van ’t Veer, Leon E. Niezen, Denice van Herwerden, Saer Samanipour, Dwight R. Stoll, Patrick Forré, Bernd Ensing, Govert W. Somsen, Bob W. J. Pirok, BioAnalytical Chemistry, AIMMS, HIMS Other Research (FNWI), Amsterdam Machine Learning lab (IVI, FNWI), Analytical Chemistry and Forensic Science (HIMS, FNWI), and Molecular Simulations (HIMS, FNWI)
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SDG 17 - Partnerships for the Goals ,Bayes Theorem ,Chemometrics ,Mass Spectrometry ,Algorithms ,Analytical Chemistry ,Chromatography, Liquid - Abstract
The majority of liquid chromatography (LC) methods are still developed in a conventional manner, that is, by analysts who rely on their knowledge and experience to make method development decisions. In this work, a novel, open-source algorithm was developed for automated and interpretive method development of LC(-mass spectrometry) separations ("AutoLC"). A closed-loop workflow was constructed that interacted directly with the LC system and ran unsupervised in an automated fashion. To achieve this, several challenges related to peak tracking, retention modeling, the automated design of candidate gradient profiles, and the simulation of chromatograms were investigated. The algorithm was tested using two newly designed method development strategies. The first utilized retention modeling, whereas the second used a Bayesian-optimization machine learning approach. In both cases, the algorithm could arrive within 4-10 iterations (i.e., sets of method parameters) at an optimum of the objective function, which included resolution and analysis time as measures of performance. Retention modeling was found to be more efficient while depending on peak tracking, whereas Bayesian optimization was more flexible but limited in scalability. We have deliberately designed the algorithm to be modular to facilitate compatibility with previous and future work (e.g., previously published data handling algorithms).
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- 2022
30. Inter-laboratory mass spectrometry dataset based on passive sampling of drinking water for non-target analysis
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Claudio Roscioli, C. Soulier, Marja H. Lamoree, Bernard Bajema, Griet Jacobs, R. Moilleron, Aurélie Fildier, Gianluca Coppola, Pavla Fialová, Julien Le Roux, Cecile Miege, Bastian Schulze, Lubertus Bijlsma, Martijn Pijnappels, Tim Jonkers, Saer Samanipour, Sapia Murgolo, Roman Grabic, Frank Menger, Robert B. Young, Emmanuelle Mebold, Emmanuelle Vulliet, Massimo Peruzzo, Juliane Hollender, Teresa Mairinger, Christelle Margoum, Sylvain Merel, Sarit Kaserzon, Giuseppe Mascolo, Nikolaos S. Thomaidis, Branislav Vrana, Pablo Gago-Ferrero, Ian Allan, Reza Aalizadeh, Denice van Herwerden, Jeroen Meijer, Sara Valsecchi, Nestor Etxebarria, Malcolm J. Reid, Thorsten Klaus Otto Gravert, Florian Dubocq, Martin Ejnar Hansen, Nina Huynh, Emil Frøkjær, HIMS Other Research (FNWI), University of Queensland [Brisbane], University of Amsterdam [Amsterdam] (UvA), Norwegian Institute for Water Research (NIVA), Universitat Jaume I, University of the Basque Country/Euskal Herriko Unibertsitatea (UPV/EHU), Aarhus University [Aarhus], Riverly (Riverly), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Research Centre for Toxic Compounds in the Environment [Brno] (RECETOX / MUNI), Faculty of Science [Brno] (SCI / MUNI), Masaryk University [Brno] (MUNI)-Masaryk University [Brno] (MUNI), National and Kapodistrian University of Athens (NKUA), Vitens NV, Örebro University, Eurolab Srl, TRACES - Technologie et Recherche en Analyse Chimique pour l'Environnement et la Santé, Institut des Sciences Analytiques (ISA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), UNIVERSITY OF SOUTH BOHEMIA CESKE BUDEJOVICE CZE, Partenaires IRSTEA, Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Instituto Catalán de Investigación del Agua - ICRA (SPAIN) (ICRA), Swiss Federal Insitute of Aquatic Science and Technology [Dübendorf] (EAWAG), École des Ponts ParisTech (ENPC), Flemish Institute for Technological Research (VITO), Vrije Universiteit Amsterdam [Amsterdam] (VU), Laboratoire Eau Environnement et Systèmes Urbains (LEESU), École des Ponts ParisTech (ENPC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Universität für Bodenkultur Wien = University of Natural Resources and Life [Vienne, Autriche] (BOKU), Istituto di Ricerca Sulle Acque, Università degli studi di Bari Aldo Moro = University of Bari Aldo Moro (UNIBA), Enveloppes fluides : de la ville à l'exobiologie (EFLUVE (UMS_3563)), Institut national des sciences de l'Univers (INSU - CNRS)-École des Ponts ParisTech (ENPC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Swedish University of Agricultural Sciences (SLU), Rijkswaterstaat [Delft], INSTITUTO DI RICERCA SULLE ACQUE ITA, Bureau de Recherches Géologiques et Minières (BRGM) (BRGM), Colorado State University [Fort Collins] (CSU), NORMAN network, Danish Environmental Protection Agency : MST-667-00207, Aarhus University Research Foundation : AUFF-T-2017-FLS-7-4, University of the Basque Country [Bizkaia] (UPV/EHU), Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), University of Natural Resources and Life Sciences (BOKU), Università degli studi di Bari Aldo Moro (UNIBA), Institut national des sciences de l'Univers (INSU - CNRS)-École des Ponts ParisTech (ENPC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), E&H: Environmental Chemistry and Toxicology, and AIMMS
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Statistics and Probability ,Data Descriptor ,Computer science ,Science ,010501 environmental sciences ,Library and Information Sciences ,computer.software_genre ,01 natural sciences ,Education ,Workflow ,Set (abstract data type) ,spectrometry ,Non target ,Resource (project management) ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,0105 earth and related environmental sciences ,Mass spectrometry ,[SDE.IE]Environmental Sciences/Environmental Engineering ,Drinking Water ,010401 analytical chemistry ,Quality control ,Environmental monitoring ,6. Clean water ,0104 chemical sciences ,Computer Science Applications ,Benchmarking ,Benchmark (computing) ,Computer-aided ,mass ,Data mining ,COLLABORATIVE TRIAL ,POLLUTANTS ,IDENTIFICATION ,CONTAMINANTS ,ENVIRONMENT ,MIXTURES ,PLATFORM ,SUSPECT ,Statistics, Probability and Uncertainty ,SDG 6 - Clean Water and Sanitation ,Laboratories ,computer ,Algorithms ,Passive sampling ,Information Systems - Abstract
Non-target analysis (NTA) employing high-resolution mass spectrometry is a commonly applied approach for the detection of novel chemicals of emerging concern in complex environmental samples. NTA typically results in large and information-rich datasets that require computer aided (ideally automated) strategies for their processing and interpretation. Such strategies do however raise the challenge of reproducibility between and within different processing workflows. An effective strategy to mitigate such problems is the implementation of inter-laboratory studies (ILS) with the aim to evaluate different workflows and agree on harmonized/standardized quality control procedures. Here we present the data generated during such an ILS. This study was organized through the Norman Network and included 21 participants from 11 countries. A set of samples based on the passive sampling of drinking water pre and post treatment was shipped to all the participating laboratories for analysis, using one pre-defined method and one locally (i.e. in-house) developed method. The data generated represents a valuable resource (i.e. benchmark) for future developments of algorithms and workflows for NTA experiments., Measurement(s)chemical • drinking waterTechnology Type(s)high resolution mass spectrometry • non-target analysis • InterlaboratoryFactor Type(s)methodSample Characteristic - Environmentlaboratory environment Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.15028665
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- 2021
31. Maximizing output from non-target screening
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Cathrin Veenaas, Maria Dam, Pawel Rostkowski, Malcom J. Reid, Stellan Fischer, Birgitta Andreasen, Saer Samanipour, Bert van Bavel, Martin Schlabach, and Peter Haglund
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Non target ,Information retrieval ,Point (typography) ,Computer science ,Naturvetenskap ,Suspect ,Natural Sciences - Abstract
The purpose of this project is to dig deeper into the data material already generated in the Suspect screening in Nordic countries: Point sources in city areas (TemaNord: 2017:561) to further optimize the benefits of the major work that has already been done. Samples (effluent, sediment, and biota) from all of the Nordic countries were carefully selected, sampled and analysed by a consortium of some of the Nordic region’s most experienced scientific groups in analyses of emerging environmental contaminants. But where perhaps the full potential of the generated data is still to be realized. This project will try to further identify and describe the substances already detected, to be able to better understand what substances we in modern Nordic societies release into the sea via our wastewater.
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- 2021
32. Size matters: Size fractionation and quantification of nano- and microplastics in Australian seafood
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Kevin Thomas, Tamara Galloway, Jochen Mueller, Sarit Kaserzon, Michael Gallen, Saer Samanipour, Jonathan Harris, Sarah Fraissinet-Tachet, Stacey O’Brien, Jake O Brien, Elvis Dartey Okoffo, and Francisca Ribeiro
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- 2021
33. Quantitative analysis of micro- and nano-plastics in environmental samples using pressurised liquid extraction followed by pyrolysis gas chromatography mass spectrometry
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Kevin Thomas, Jochen Mueller, Saer Samanipour, Xianyu Wang, Cassandra Rauert, Jake O Brien, Sarit Kaserzon, Tania Toapanta, Stephen Burrows, Stacey O’Brien, Francisca Ribeiro, and Elvis Dartey Okoffo
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- 2021
34. A novel method for the quantification of tire and polymer-modified bitumen particles in environmental samples by pyrolysis gas chromatography mass spectroscopy
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Elvis D. Okoffo, Saer Samanipour, Sondre Meland, Ole Christian Lind, Kevin V. Thomas, Elisabeth S. Rødland, Cassandra Rauert, Lene Sørlie Heier, Malcom J. Reid, and Analytical Chemistry and Forensic Science (HIMS, FNWI)
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Environmental Engineering ,Materials science ,Styrene-butadiene ,Polymers ,Health, Toxicology and Mutagenesis ,Analytical chemistry ,Mass spectrometry ,Pollution ,Gas Chromatography-Mass Spectrometry ,Hydrocarbons ,Styrene ,Matrix (chemical analysis) ,chemistry.chemical_compound ,Pyrolysis–gas chromatography–mass spectrometry ,chemistry ,Natural rubber ,visual_art ,visual_art.visual_art_medium ,Environmental Chemistry ,Gas chromatography ,Plastics ,Waste Management and Disposal ,Pyrolysis - Abstract
Tire and road wear particles may constitute the largest source of microplastic particles into the environment. Quantification of these particles are associated with large uncertainties which are in part due to inadequate analytical methods. New methodology is presented in this work to improve the analysis of tire and road wear particles using pyrolysis gas chromatography mass spectrometry. Pyrolysis gas chromatography mass spectrometry of styrene butadiene styrene, a component of polymer-modified bitumen used on road asphalt, produces pyrolysis products identical to those of styrene butadiene rubber and butadiene rubber, which are used in tires. The proposed method uses multiple marker compounds to measure the combined mass of these rubbers in samples and includes an improved step of calculating the amount of tire and road based on the measured rubber content and site-specific traffic data. The method provides good recoveries of 83–92% for a simple matrix (tire) and 88–104% for a complex matrix (road sediment). The validated method was applied to urban snow, road-side soil and gully-pot sediment samples. Concentrations of tire particles in these samples ranged from 0.1 to 17.7 mg/mL (snow) to 0.6–68.3 mg/g (soil/sediment). The concentration of polymer-modified bitumen ranged from 0.03 to 0.42 mg/mL (snow) to 1.3–18.1 mg/g (soil/sediment).
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- 2021
35. Confidence assessment of LC-HRMS chemical identification employing machine learning
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Saer Samanipour, Choi, Phil Min, O'Brien, Jake, Reid, Malcolm J, and Thomas, Kevin Victor
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- 2021
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36. Probabilistic Approach for the Componentization of Non-targeted Liquid Chromatography High-Resolution Mass Spectrometry Data
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Van Herwerden, Denice, Choi, Phil, O’Brien, Jake, Thomas, Kevin V., and Saer Samanipour
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- 2021
- Full Text
- View/download PDF
37. Airborne emissions of microplastic fibres from domestic laundry dryers
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Francisca Ribeiro, Tania Toapanta, Jake W. O'Brien, Rizsa Albarracin, Saer Samanipour, Stephanie L. Wright, Cassandra Rauert, Elvis D. Okoffo, Kevin V. Thomas, Xianyu Wang, Stacey O'Brien, and HIMS Other Research (FNWI)
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Microplastics ,Environmental Engineering ,Materials science ,010504 meteorology & atmospheric sciences ,Laundry ,GC/MS ,010501 environmental sciences ,Microplastic Emission Air Fibre Dryer Pyr ,Pulp and paper industry ,01 natural sciences ,Pollution ,Ambient air ,law.invention ,Polyester ,law ,Environmental Chemistry ,Particle ,Fourier transform infrared spectroscopy ,Waste Management and Disposal ,Pyrolysis ,Filtration ,0105 earth and related environmental sciences - Abstract
An emission source of microplastics into the environment is laundering synthetic textiles and clothing. Mechanical drying as a pathway for emitting microplastics, however, is poorly understood. In this study, emissions of microplastic fibres were sampled from a domestic vented dryer to assess whether mechanical drying of synthetic textiles releases microplastic fibres into the surrounding air or are captured by the inbuilt filtration system. A blue polyester fleece blanket was repeatedly washed and dried using the 'Normal Dry' program of a common domestic dryer operated at temperatures between 56 and 59 °C for 20 min. Microfibres in the ambient air and during operation of the dryer were sampled and analysed using microscopy for particle quantification and characterisation followed by Fourier-Transform Infrared Spectroscopy (FTIR) and Pyrolysis Gas Chromatography-Mass Spectrometry (Pyr-GC/MS) for chemical characterisation. Blue fibres averaged 6.4 ± 9.2 fibres in the room blank (0.17 ± 0.27 fibres/m3 ), 8.8 ± 8.5 fibres (0.05 ± 0.05 fibres/m3 ) in the procedural blank and 58 ± 60 (1.6 ± 1.8 fibres/ m3 ) in the sample. This is the first study to measure airborne emissions of microplastic fibres from mechanical drying, confirming that it is an emission source of microplastic fibres into air – particularly indoor air. Also see: https://micro2022.sciencesconf.org/426554/document, In MICRO 2022, Online Atlas Edition: Plastic Pollution from MACRO to nano
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- 2020
38. Response to Comment on 'Quantitative Analysis of Selected Plastics in High-Commercial-Value Australian Seafood by Pyrolysis Gas Chromatography Mass Spectrometry'
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Michael Gallen, Kevin V. Thomas, Stacey O'Brien, Jochen F. Mueller, Sarah Fraissinet-Tachet, Elvis D. Okoffo, Saer Samanipour, Francisca Ribeiro, Jake W. O'Brien, Sarit Kaserzon, Tamara S. Galloway, and HIMS Other Research (FNWI)
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Pyrolysis–gas chromatography–mass spectrometry ,Chromatography ,Seafood ,Value (economics) ,Australia ,Environmental Chemistry ,Environmental science ,General Chemistry ,Quantitative analysis (chemistry) ,Plastics ,Gas Chromatography-Mass Spectrometry ,Pyrolysis - Published
- 2020
39. An assessment of Quality Assurance/Quality Control Efforts in High Resolution Mass Spectrometry Non-Target Workflows for Analysis of Environmental Samples
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Sara Ghorbani Gorji, Kevin V. Thomas, Sarit Kaserzon, Amy Heffernan, Jochen F. Mueller, Saer Samanipour, Youngjoon Jeon, María José Gómez Ramos, Pradeep Dewapriya, Jake W. O'Brien, Bastian Schulze, and HIMS Other Research (FNWI)
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Data processing ,Computer science ,business.industry ,media_common.quotation_subject ,010401 analytical chemistry ,Control (management) ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Reliability engineering ,Consistency (database systems) ,Non target ,Workflow ,Quality (business) ,business ,Quality assurance ,Spectroscopy ,media_common ,Type I and type II errors - Abstract
The application of non-target analysis (NTA), a comprehensive approach to characterize unknown chemicals, including chemicals of emerging concern has seen a steady increase recently. Given the relative novelty of this type of analysis, robust quality assurance and quality control (QA/QC) measures are imperative to ensure quality and consistency of results obtained using different workflows. Due to fundamental differences to established targeted workflows, new or expanded approaches are necessary; for example to minimize the risk of losing potential substances of interest (i.e. false negatives, Type II error). We present an overview of QA/QC techniques for NTA workflows published to date, specifically focusing on the analysis of environmental samples using liquid chromatography coupled to HRMS. From a QA/QC perspective, we discuss methods used for each step of analysis: sample preparation, chromatography, mass spectrometry, and data processing. We then finish with a series of recommendations to improve the quality assurance of NTA workflows.
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- 2020
40. Concentration and Distribution of Naphthenic Acids in the Produced Water from Offshore Norwegian North Sea Oilfields
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Tone K. Frost, Kevin V. Thomas, Jan Thomas Rundberget, Malcolm J. Reid, and Saer Samanipour
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Chromatography ,Chemistry ,Negative mode ,Electrospray ionization ,Water pollutants ,Carboxylic Acids ,Water ,General Chemistry ,010501 environmental sciences ,Mass spectrometry ,01 natural sciences ,Produced water ,Environmental Chemistry ,Oil and Gas Fields ,North Sea ,North sea ,Water Pollutants, Chemical ,0105 earth and related environmental sciences - Abstract
Naphthenic acids (NAs) constitute one of the toxic components of the produced water (PW) from offshore oil platforms discharged into the marine environment. We employed liquid chromatography (LC) coupled to high-resolution mass spectrometry with electrospray ionization (ESI) in negative mode for the comprehensive chemical characterization and quantification of NAs in PW samples from six different Norwegian offshore oil platforms. In total, we detected 55 unique NA isomer groups, out of the 181 screened homologous groups, across all tested samples. The frequency of detected NAs in the samples varied between 14 and 44 isomer groups. Principal component analysis (PCA) indicated a clear distinction of the PW from the tested platforms based on the distribution of NAs in these samples. The averaged total concentration of NAs varied between 6 and 56 mg L-1, among the tested platforms, whereas the concentrations of the individual NA isomer groups ranged between 0.2 and 44 mg L-1. Based on both the distribution and the concentration of NAs in the samples, the C8H14O2 isomer group appeared to be a reasonable indicator of the presence and the total concentration of NAs in the samples with a Pearson correlation coefficient of 0.89.
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- 2020
41. The NORMAN Association and the European Partnership for Chemicals Risk Assessment (PARC): let's cooperate!
- Author
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Damià Barceló, Heinz Ruedel, Pawel Rostkowski, Dorte Herzke, Magnus Engwall, Despo Fatta-Kassinos, Brendan McHugh, Martin Schlabach, Marion Junghans, Susanne Boutroup, Cecile Miege, Miren López de Alda, Anneli Kruve, Valeria Dulio, Pablo Gago-Ferrero, Bert van Bavel, Benjamin Lopez, Klára Hilscherová, Nikolaos S. Thomaidis, Barbara Kasprzyk-Hordern, Peter Tarábek, Branislav Vrana, Jarmila Makovinská, Jonathan W. Martin, Adrian Covaci, Sara Valsecchi, Lutz Ahrens, Manfred Sengl, Ian Allan, Adèle Bressy, Lian Lundy, Jan Koschorreck, Stefano Polesello, Werner Brack, John Munthe, Peter C. von der Ohe, Ionan Marigómez, Lubos Cirka, Henner Hollert, Félix Hernández, Marlene Ågerstrand, Pernilla Bohlin-Nizzetto, Stefan P.J. van Leeuwen, Steffen Keiter, Reza Aalizadeh, Dorien Ten Hulscher, Leo Posthuma, Ivo Roessink, Juliane Hollender, Katrin Vorkamp, Tobias Schulze, Simon O’Toole, Dimitra A. Lambropoulou, Milou M.L. Dingemans, Paul J. Van den Brink, Stefan A. E. Kools, Marja H. Lamoree, Nikiforos A. Alygizakis, Anja Derksen, Anne Togola, Sara Rodríguez-Mozaz, Jaroslav Slobodnik, Geneviève Deviller, Saer Samanipour, Pim E.G. Leonards, Noora Perkola, Emma L. Schymanski, Jan H. Christensen, Institut National de l'Environnement Industriel et des Risques (INERIS), German Federal Environmental Agency / Umweltbundesamt (UBA), Norwegian Institute for Water Research (NIVA), Wageningen University and Research [Wageningen] (WUR), Swiss Federal Insitute of Aquatic Science and Technology [Dübendorf] (EAWAG), IVL Swedish Environmental Research Institute Ltd, Norwegian Institute for Air Research (NILU), National and Kapodistrian University of Athens (NKUA), Stockholm University, Swedish University of Agricultural Sciences (SLU), Environmental Institute, s.r.o. (EI), Consejo Superior de Investigaciones Científicas [Spain] (CSIC), Aarhus University [Aarhus], Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ), Goethe-University Frankfurt am Main, Laboratoire Eau Environnement et Systèmes Urbains (LEESU), École des Ponts ParisTech (ENPC)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), IT University of Copenhagen (ITU), EI - Environmental Institute, s.r.o, Toxicological Centre, University of Antwerp (UA), AD Eco Advies, DERAC Environmental Risk Assessment Chem, KWR Watercycle Research Institute, Institute for Risk Assessment Sciences [Utrecht, The Netherlands] (IRAS), Utrecht University [Utrecht], SWACCS - Swedish Acad Consortia Chem Safety, Örebro University, University of Cyprus [Nicosia] (UCY), INSTITUT CATALA DE RECERCA DE L'AIGUA GIRONA ESP, Partenaires IRSTEA, Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Universitat Jaume I, Research Centre for Toxic Compounds in the Environment [Brno] (RECETOX / MUNI), Faculty of Science [Brno] (SCI / MUNI), Masaryk University [Brno] (MUNI)-Masaryk University [Brno] (MUNI), Rheinisch-Westfälische Technische Hochschule Aachen University (RWTH), Ctr Ecotox Eawag, EPFL ENAC IIE GE, Stn 2, CH-1015 Lausanne, Switzerland, Ecole Polytechnique Fédérale de Lausanne (EPFL), University of Bath [Bath], Örebro University Hospital [Örebro, Sweden], Aristotle University of Thessaloniki, Vrije Universiteit Amsterdam [Amsterdam] (VU), Bureau de Recherches Géologiques et Minières (BRGM) (BRGM), Luleå University of Technology (LUT), Middlesex University, VUVH Water Research Institute, University of the Basque Country/Euskal Herriko Unibertsitatea (UPV/EHU), Marine Inst, Galway, Ireland., Riverly (Riverly), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Environmental Protection Agency, Ireland, Finnish Environment Institute (SYKE), CNR-IRSA,UOS Brugherio, Brugherio, Italy, National Institute for Public Health and the Environment [Bilthoven] (RIVM), Radboud University [Nijmegen], Instituto Catalán de Investigación del Agua - ICRA (SPAIN) (ICRA), HELMHOLTZ CENTER FOR ENVIRONMENTAL RESEARCH UFZ LEIPZIG DEU, University of Amsterdam [Amsterdam] (UvA), Centre for Environmental Research, University of Luxembourg [Luxembourg], Bavarian Environment Agency (LfU), Ministry of Infrastructure and the Environment, Department of Chemistry, CNR Water Research Institute (IRSA), Consiglio Nazionale delle Ricerche (CNR), Environmental Institute, Roessnik, Ivo, IT University of Copenhagen, University of Cyprus [Nicosia], Rheinisch-Westfälische Technische Hochschule Aachen (RWTH), University of the Basque Country [Bizkaia] (UPV/EHU), Radboud university [Nijmegen], E&H: Environmental Chemistry and Toxicology, AIMMS, E&H: Environmental Bioanalytical Chemistry, Amsterdam Sustainability Institute, and Publica
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Aquatic Ecology and Water Quality Management ,Knowledge management ,Plan (drawing) ,010501 environmental sciences ,NORMAN network ,01 natural sciences ,suspect screening ,Underdevelopment ,BU Contaminants & Toxins ,non-target screening ,Multidisciplinary, general & others [G99] [Physical, chemical, mathematical & earth Sciences] ,high-resolution mass spectrometry ,bioassays ,Multidisciplinaire, général & autres [G99] [Physique, chimie, mathématiques & sciences de la terre] ,Comparability ,Environmental Sciences (social aspects to be 507) ,Environmental monitoring ,Suspect screening ,Miljövetenskap ,Pollution ,Contaminants of emerging concern ,Chemistry ,High‑resolution mass spectrometry ,General partnership ,[SDE]Environmental Sciences ,Chemical risk assessment and prioritisation ,contaminants of emerging concern ,Risk assessment ,effect-based methods ,Environmental Risk Assessment ,High-resolution mass spectrometry ,Association (object-oriented programming) ,BU Contaminanten & Toxines ,Effect‑based methods ,in-vitro ,SDG 17 - Partnerships for the Goals ,framework ,Biology ,0105 earth and related environmental sciences ,environmental monitoring ,Non‑target screening ,emerging contaminants ,WIMEK ,business.industry ,chemical risk assessment and prioritisation ,Effect-based methods ,010401 analytical chemistry ,prediction ,Aquatische Ecologie en Waterkwaliteitsbeheer ,0104 chemical sciences ,water extracts ,13. Climate action ,Data quality ,recommendations ,Early warning system ,Non-target screening ,business ,Environmental Sciences - Abstract
© The Author(s) 2020., The Partnership for Chemicals Risk Assessment (PARC) is currently under development as a joint research and innovation programme to strengthen the scientific basis for chemical risk assessment in the EU. The plan is to bring chemical risk assessors and managers together with scientists to accelerate method development and the production of necessary data and knowledge, and to facilitate the transition to next-generation evidence-based risk assessment, a non-toxic environment and the European Green Deal. The NORMAN Network is an independent, well-established and competent network of more than 80 organisations in the field of emerging substances and has enormous potential to contribute to the implementation of the PARC partnership. NORMAN stands ready to provide expert advice to PARC, drawing on its long experience in the development, harmonisation and testing of advanced tools in relation to chemicals of emerging concern and in support of a European Early Warning System to unravel the risks of contaminants of emerging concern (CECs) and close the gap between research and innovation and regulatory processes. In this commentary we highlight the tools developed by NORMAN that we consider most relevant to supporting the PARC initiative: (i) joint data space and cutting-edge research tools for risk assessment of contaminants of emerging concern; (ii) collaborative European framework to improve data quality and comparability; (iii) advanced data analysis tools for a European early warning system and (iv) support to national and European chemical risk assessment thanks to harnessing, combining and sharing evidence and expertise on CECs. By combining the extensive knowledge and experience of the NORMAN network with the financial and policy-related strengths of the PARC initiative, a large step towards the goal of a non-toxic environment can be taken.
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- 2020
42. Mellom miljøgifter og metoder på Bjørnøya
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Lie, Elisabeth, Saer Samanipour, Reid, Malcolm, Bavel, Bert Van, Poste, Amanda, Allan, Ian, Grung, Merete, Christensen, Guttorm, and Evenset, Anita
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- 2020
- Full Text
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43. Population Socioeconomics Predicted Using Wastewater
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Phil M. Choi, Saer Samanipour, Benjamin J. Tscharke, Kevin V. Thomas, Jake W. O'Brien, Jochen F. Mueller, and HIMS Other Research (FNWI)
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education.field_of_study ,Ecology ,Health, Toxicology and Mutagenesis ,Population ,010501 environmental sciences ,01 natural sciences ,Pollution ,6. Clean water ,03 medical and health sciences ,0302 clinical medicine ,Wastewater ,Environmental health ,Environmental Chemistry ,Environmental science ,030212 general & internal medicine ,education ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Water Science and Technology - Abstract
Municipal wastewater typically contains many drugs and anthropogenic chemicals or biomarkers. The occurrence of these chemicals in wastewater is linked to the socioeconomic characteristics of the contributing population. Based on these relationships, we propose, execute and evaluate a novel model for predicting population socioeconomics. Specifically, we used biomarkers in wastewater to predict 37 socioeconomic characteristics of populations during the Australian Census. The resultant model was further tested on nine other populations separate from the training data set. Prediction performance in the test populations (defined as accuracy ± SD) fit within 75% and 125% for many features such as catchment median age, and specific measures of educational attainment (e.g., high school completion) and employment (e.g., managerial employment). Considering the relative ease, low cost and high frequency at which wastewater samples can be collected and analyzed, wastewater analysis could be used as a complementary technique for assessing population socioeconomics.
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- 2020
44. Elevated Concentrations of 4‑Bromobiphenyl and 1,3,5-Tribromobenzene Found in Deep Water of Lake Geneva Based on GC×GC-ENCI-TOFMS and GC×GC-μECD
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J. Samuel Arey, Petros Dimitriou-Christidis, Deedar Nabi, and Saer Samanipour
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Pollutant ,Biphenyl ,Aqueous solution ,General Chemical Engineering ,010401 analytical chemistry ,Ether ,General Chemistry ,010501 environmental sciences ,01 natural sciences ,Article ,Orders of magnitude (mass) ,0104 chemical sciences ,Deep water ,lcsh:Chemistry ,chemistry.chemical_compound ,chemistry ,lcsh:QD1-999 ,Environmental chemistry ,4-bromobiphenyl ,0105 earth and related environmental sciences - Abstract
This is an open access article published by American Chemical Society in ACS Omega, available online: https://pubs.acs.org/ We quantified the concentrations of two little-studied brominated pollutants, 1,3,5-tribromobenzene (TBB) and 4-bromobiphenyl (4BBP), in the deep water column and sediments of Lake Geneva. We found aqueous concentrations of 625 ± 68 pg L−1 for TBB and 668 ± 86 pg L−1 for 4BBP over a depth range of 70−191.5 m (near-bottom depth), based on duplicate measurements taken at five depths during three separate 1 month sampling periods at our sampling site near Vidy Bay. These levels of TBB and 4BBP were 1 or 2 orders of magnitude higher than the quantified aqueous concentrations of the components of the pentabrominated biphenyl ether technical mixture, which is a flame retardant product that had a high production volume in Europe before 2001. We observed statistically significant vertical concentration trends for both TBB and 2,2′,4,4′,6-pentabromobiphenyl ether in the deep water column, which indicates that transport and/or degradation processes affect these compounds. These measurements were enabled by application of a comprehensive two-dimensional gas chromatograph coupled to an electron capture negative chemical ionization time-of-flight mass spectrometer (GC×GC-ENCI-TOFMS) and to a micro-electron capture detector (GC×GC-μECD). GC×GC-ENCI-TOFMS and GC×GC-μECD were found to be >10× more sensitive toward brominated pollutants than conventional GC×GC-EI-TOFMS (with an electron impact (EI) ionization source), the latter of which had insufficient sensitivity to detect these emerging brominated pollutants in the analyzed samples. GC×GC also enabled the estimation of several environmentally relevant partitioning properties of TBB and 4BBP, further confirming previous evidence that these pollutants are bioaccumulative and have long-range transport potential.
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- 2017
45. The Effect of Extraction Methodology on the Recovery and Distribution of Naphthenic Acids of oilfield Produced Water
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Kevin V. Thomas, Monica Casale, Saer Samanipour, Malcolm J. Reid, Maryam Hooshyari, and Jose Antonio Baz-Lomba
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Extraction recovery ,LC-HRMS ,Environmental Engineering ,Chromatography ,010504 meteorology & atmospheric sciences ,Chemistry ,Sample complexity ,Extraction (chemistry) ,010501 environmental sciences ,01 natural sciences ,Pollution ,Produced water ,Chemical space ,Chemometrics ,Naphthenic acids ,Environmental Chemistry ,Statistical analysis ,Extraction methods ,Solid phase extraction ,Sample extraction ,Waste Management and Disposal ,0105 earth and related environmental sciences - Abstract
Comprehensive chemical characterization of naphthenic acids (NAs) in oilfield produced water is a challenging task due to sample complexity. The recovery of NAs from produced water, and the corresponding distribution of detectable NAs are strongly influenced by sample extraction methodologies. In this study, we evaluated the effect of the extraction method on chemical space (i.e. the total number of chemicals present in a sample), relative recovery, and the distribution of NAs in a produced water sample. Three generic and pre-established extraction methods (i.e. liquid-liquid extraction (Lq), and solid phase extraction using HLB cartridges (HLB), and the combination of ENV+ and C8 (ENV) cartridges) were employed for our evaluation. The ENV method produced the largest number of detected NAs (134 out of 181) whereas the HLB and Lq methods produced 108 and 91 positive detections, respectively, in the tested produced water sample. For the relative recoveries, the ENV performed better than the other two methods. The uni-variate and multi-variate statistical analysis of our results indicated that the ENV and Lq methods explained most of the variance observed in our data. When looking at the distribution of NAs in our sample the ENV method appeared to provide a more complete picture of the chemical diversity of NAs in that sample. Finally, the results are further discussed.
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- 2019
46. Quantification of Naphthenic Acids in Produced Water from Norwegian Offshore Oil Platforms in the North Sea
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Saer Samanipour, Reid, Malcolm J, Frost, Karin, and Thomas, Kevin V
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- 2019
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47. Social, demographic, and economic correlates of food and chemical consumption measured by wastewater-based epidemiology
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Saer Samanipour, Jake W. O'Brien, Benjamin J. Tscharke, Phil M. Choi, Jochen F. Mueller, Wayne Hall, Kevin V. Thomas, and Coral Gartner
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medicine.medical_specialty ,Wastewater-Based Epidemiological Monitoring ,Population ,Social Sciences ,010501 environmental sciences ,Wastewater ,01 natural sciences ,drugs ,03 medical and health sciences ,0302 clinical medicine ,socioeconomics ,Environmental health ,SEIFA ,Epidemiology ,Medicine ,Humans ,030212 general & internal medicine ,education ,Socioeconomic status ,0105 earth and related environmental sciences ,Consumption (economics) ,Pharmacology ,education.field_of_study ,Multidisciplinary ,business.industry ,Public health ,food ,public health ,Australia ,Biological Sciences ,Educational attainment ,PNAS Plus ,Pharmaceutical Preparations ,Socioeconomic Factors ,business ,Food Analysis - Abstract
Significance To date, wastewater-based epidemiology has focused on reporting drug and pharmaceutical consumption patterns by analyzing domestic wastewater. Here we explore the relationships between chemicals in wastewater and social, demographic, and economic parameters of the respective populations. We show the extent to which consumption of chemicals such as opioids and illicit drugs are associated with sociodemographics. We also examine chemicals that reflect individuals’ consumption of food components in wastewater and show that disparities in diet are associated with educational level. Our study shows that chemicals in wastewater reflect the social, demographic, and economic properties of the respective populations and highlights the potential value of wastewater in studying the sociodemographic determinants of population health., Wastewater is a potential treasure trove of chemicals that reflects population behavior and health status. Wastewater-based epidemiology has been employed to determine population-scale consumption of chemicals, particularly illicit drugs, across different communities and over time. However, the sociodemographic or socioeconomic correlates of chemical consumption and exposure are unclear. This study explores the relationships between catchment specific sociodemographic parameters and biomarkers in wastewater generated by the respective catchments. Domestic wastewater influent samples taken during the 2016 Australian census week were analyzed for a range of diet, drug, pharmaceutical, and lifestyle biomarkers. We present both linear and rank-order (i.e., Pearson and Spearman) correlations between loads of 42 biomarkers and census-derived metrics, index of relative socioeconomic advantage and disadvantage (IRSAD), median age, and 40 socioeconomic index for area (SEIFA) descriptors. Biomarkers of caffeine, citrus, and dietary fiber consumption had strong positive correlations with IRSAD, while tramadol, atenolol, and pregabalin had strong negative correlation with IRSAD. As expected, atenolol and hydrochlorothiazide correlated positively with median age. We also found specific SEIFA descriptors such as occupation and educational attainment correlating with each biomarker. Our study demonstrates that wastewater-based epidemiology can be used to study sociodemographic influences and disparities in chemical consumption.
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- 2019
48. Integrated chemical exposure assessment of coastal green turtle foraging grounds on the Great Barrier Reef
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Saer Samanipour, Jochen F. Mueller, Sarit Kaserzon, Christie Gallen, Amy Heffernan, Gülsah Dogruer, and Maria Jose Gomez-Ramos
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Pollution ,Geologic Sediments ,Environmental Engineering ,010504 meteorology & atmospheric sciences ,media_common.quotation_subject ,010501 environmental sciences ,01 natural sciences ,law.invention ,law ,Animals ,Environmental Chemistry ,Exposure assessment marine wildlife ,Seawater ,Ecosystem ,Turtle (robot) ,Waste Management and Disposal ,0105 earth and related environmental sciences ,media_common ,Pollutant ,High resolution mass spectrometry (HRMS) ,Ecosystem health ,Coral Reefs ,Sediment ,Biota ,Environmental Exposure ,Feeding Behavior ,Green turtle ,Turtles ,Fishery ,Passive sampling ,Case-Control Studies ,Chemical exposure ,Environmental science ,Queensland ,Surface runoff ,Water Pollutants, Chemical ,Environmental Monitoring - Abstract
The Great Barrier Reef receives run-off from 424,000 km2 catchment area across coastal Queensland, incorporating diffuse agricultural run-off, and run-off point sources of land-based chemical pollutants from urban and industrial development. Marine biota, such as green turtles (Chelonia mydas), are exposed to these diverse chemical mixtures in their natural environments, and the long term effects on turtle and ecosystem health remain unknown. This study was part of a larger multi-disciplinary project characterising anthropogenic chemical exposures from the marine environment and turtle health. The aim of this study was to screen for a wide range of anthropogenic chemical pollutants present in the external and internal environment of green turtles, using a combination of traditional targeted chemical analyses, non-target suspect screening, and effect-based bioassay methods, while employing a case-control study design. A combination of passive (water) and grab (water, sediment) samples were investigated. Three known green turtle foraging sites were selected for sampling: two coastal ‘case’ sites influenced primarily by urban/industrial and agricultural activities, respectively; and a remote, offshore ‘control’ site. Water and sediment samples from each of the three sampling locations showed differences in chemical pollutant profiles that reflected the dominant land uses in the adjacent catchment. Targeted mass spectrometric analysis for a range of pesticides, industrial chemicals, pharmaceuticals and personal care products found the greatest detection frequency and highest concentrations in coastal samples, compared to the control. Non-target screening analysis of water showed clear differentiation in chemical profile of the urban/industrial site. In-vitro assays of sediment samples from the control site had lowest induction, compared to coastal locations, as expected. Here we present evidence that turtles foraging in coastal areas are exposed to a range of anthropogenic pollutants derived from the adjacent coastal catchment areas.
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- 2019
49. A Novel High-Resolution Mass Spectrometry Toolbox for Unravelling the Chemical Exposome
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Saer Samanipour, Reid, Malcolm J, and Thomas, Kevin Victor
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- 2019
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50. Correction to Quantitative Analysis of Selected Plastics in High-Commercial-Value Australian Seafood by Pyrolysis Gas Chromatography Mass Spectrometry
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Francisca Ribeiro, Elvis D. Okoffo, Jake W. O’Brien, Sarah Fraissinet-Tachet, Stacey O’Brien, Michael Gallen, Saer Samanipour, Sarit Kaserzon, Jochen F. Mueller, Tamara Galloway, and Kevin V. Thomas
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Environmental Chemistry ,General Chemistry - Published
- 2020
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