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Objective: This study investigated the changes in bacterial communities within decomposing swine microcosms, comparing soil with or without intact microbial communities, and under aerobic and anaerobic conditions. Methods: The experimental microcosms consisted of four conditions: UA, unsterilized soil-aerobic condition; SA, sterilized soil-aerobic condition; UAn, unsterilized soil-anaerobic condition; and San, sterilized soil-anaerobic condition. The microcosms were prepared by mixing 112.5 g of soil and 37.5 g of ground carcass, which were then placed in sterile containers. The carcass-soil mixture was sampled at day 0, 5, 10, 30, and 60 of decomposition, and the bacterial communities that formed during carcass decomposition were assessed using Illumina MiSeq sequencing of the 16S rRNA gene. Results: A total of 1,687 amplicon sequence variants representing 22 phyla and 805 genera were identified in the microcosms. The Chao1 and Shannon diversity indices varied in between microcosms at each period (p<0.05). Metagenomic analysis showed variation in the taxa composition across the burial microcosms during decomposition, with Firmicutes being the dominant phylum, followed by Proteobacteria. At the genus level, Bacillus and Clostridium were the main genera within Firmicutes. Functional prediction revealed that the most abundant Kyoto encyclopedia of genes and genomes metabolic functions were carbohydrate and amino acid metabolisms. Conclusion: This study demonstrated a higher bacteria diversity in UA and UAn microcosms than in SA and SAn microcosms. In addition, the taxonomic composition of the microbial community also exhibited changes, highlighting the impact of soil sterilization and oxygen on carcass decomposition. Furthermore, this study provided insights into the microbial communities associated with decomposing swine carcasses in microcosm. [ABSTRACT FROM AUTHOR]

The decomposition of animal bodies is a process defined by specific stages, described by the state of the body and participation of certain guilds of invertebrates and microorganisms. While the participation of invertebrates in decomposing is well-studied and actively used in crime scene investigations, information on bacteria and fungi from the scene is rarely collected or used in the identification of important factors such as estimated time of death. Modern molecular techniques such as DNA metabarcoding allow the identification and quantification of the composition of microbial communities. In this study, we used DNA metabarcoding to monitor fungal succession during the decomposition of juvenile pigs in grasslands of New Jersey, USA. Our findings show that decomposition stages differ in a diversity of fungal communities. In particular, we noted increased fungal species richness in the more advanced stages of decomposition (e.g., bloat and decay stages), with unique fungal taxa becoming active with the progression of decay. Overall, our findings improve knowledge of how fungi contribute to forensically relevant decomposition and could help with the assessment of crime scenes. [ABSTRACT FROM AUTHOR]

African swine fever (ASF) epizootic outbreaks often result in the deaths of large numbers of swine either through confirmed or suspected disease or depopulation for outbreak control. Identification of effective biosecure livestock mortality disposal methods, capable of inactivating ASF virus (ASFV) in contaminated carcasses, remains an important component for development of localized outbreak response and recovery plans. In this study, we evaluated ASFV inactivation and viral DNA degradation during composting of ASFV-infected swine carcasses in an Animal Biosafety Level 3-Ag (ABSL3-Ag) high-containment vivarium utilizing virus isolation (VI) and real-time polymerase chain reaction (RT-PCR). Four ASFV-infected pigs, approximately 54 kg, were composted for 37 days in a static, nonaerated windrow assembled using wood chips, horse manure, and pine shavings as the primary sources of carbon. The windrow daily temperature was sustained at ≥55°C for 18 days. Spleen samples, collected over 28 days, were negative for infectious ASFV by virus isolation on day 5 but remained positive for ASFV DNA by RT-PCR through day 28. At the conclusion of the study, bone marrow, muscle, and pinna samples were collected from composted carcasses, in addition to carbon materials in the windrow. No infectious ASFV was detected by virus isolation in any of the decomposed tissues or carbon samples. However, ASFV DNA remained detectable in all swine tissues (n = 36) and in 14/16 sentinel carbon samples at the end of the study, indicating that positive detection of ASFV DNA did not correlate with virus infectivity. In conclusion, infectious ASFV was rapidly eliminated in ASFV-infected swine during composting of whole carcasses by day 5, coinciding with a temperature increase in the compost pile to ≥55°C. [ABSTRACT FROM AUTHOR]

Identifying and ensuring the inactivation of the African Swine Fever virus in deadstock is a gap in the swine industry's knowledge and response capabilities. The results of our study demonstrate that ASFv in deadstock was inactivated using static aerated composting as the carcass disposal method. Replicated compost piles with whole market hogs and two different carbon sources were constructed. In-situ bags containing ASFv-infected spleen tissue were placed alongside each of the carcasses and throughout the pile. The bags were extracted at days 0, 1, 3, 7, 14, 28, 56, and 144 for ASFv detection and isolation. Real-time PCR results showed that DNA of ASFv was detected in all samples tested on day 28. The virus concentration identified through virus isolation was found to be below the detection limit by day 3 in rice hulls and by day 7 in sawdust. Given the slope of the decay, near-zero concentration with 99.9% confidence occurred at 5.0 days in rice hulls and at 6.4 days in sawdust. Additionally, the result of virus isolation also showed that the virus in bone marrow samples collected at 28 days was inactivated. [ABSTRACT FROM AUTHOR]

The permanence of a buried body in soil always induces the formation of a decomposition island that can serve as a significant recording location to understand how the persistence of a clandestine grave affects soil. This study aims to analyze the elemental exchange from buried bodies to soil, with a focus on phosphorus content, and to determine the effects of environmental factors on its persistency. The experiment was carried out using eleven swine carcasses buried in an open site (northern Italy). The analyses were performed using the Olsen P method, which allowed for a recognition of the trend of the amount of phosphorus over time, due to the decomposition of phospholipids, followed by the transfer of the element from bone to soil. Additionally, microanalyses performed using a scanning electron microscope (SEM-EDS) on two different soil sample specimens (i.e., "dust" and "plug") allowed for the identification of numerous phosphatic features (i.e., coatings, infillings, impregnations, and organo-mineral associations), which are the result of the interaction between soil and body fluids and can thus be used as indicators of the former presence of decomposing body (even in its absence). The ultramicroscopic analysis also shows increasing and decreasing amounts of P2O5 over time in the soil, which could be related to environmental conditions (i.e., soil moisture), due to the leaching of phosphorus induced by the percolation of natural rainwater. The study underlines the potential use of these methods to evaluate the possibility of a cadaver–soil linkage and of assessing the burial in the soil for a variable period. Moreover, the study may aid in analyzing the dynamics of phosphorus migration from buried bodies to soil during and after the decomposition process. [ABSTRACT FROM AUTHOR]

In order to test whether swine breed influences pork proximal composition and other nutritional traits, such as collagen, cholesterol and gross energy content, 60 carcasses from Duroc and Landrace pigs were sampled from loin and ham cut regions (15 males and 15 females from each breed). Samples were subsequently introduced to proximate analysis, using conventional AOAC protocols, enzymatic assay for cholesterol content and NIR Spectroscopy for collagen content then the data were submitted to multiple comparison analysing to test the differences between influential factors (breed, gender and cut part) on the reasoning criteria. Breed significantly influenced the total lipids content, as well as the gross energy content (P < 0.05). In all situation, Duroc samples were richer in lipids, cholesterol and energy, compared to Landrace and the same rule applied for females vs. males and for ham vs. loin comparisons. Therefore, swine breed, gender and carcass cut are factors interfering with pork chemical composition and with certain nutritional and dietetic traits, when the animals are raised within the same farm and benefit of the same rearing and nutrition conditions. [ABSTRACT FROM AUTHOR]

It is very important to understand, quantify and mitigate the physiological impact of heat stress in pigs. For pigs, the thermal comfort zone temperature ranges between 18 and 25°C. Thermal stress negatively affects the function of the intestinal barrier, inflammatory response, postabsorptive metabolism, directly affecting growth performance and carcass quality causing a serious acid-base imbalance, poor feed conversion, low nutrient intake and high mortality. Jerusalem artichoke (Helianthus tuberosus) is a valuable plant resource due to its yield (10-15 t/ha of tuber production), and a functional food ingredient with nutraceutical properties due to its chemical composition, mineral and vitamin profile, and antioxidant activity. It is a highly productive and easily grown crop that can last for years into soil. It is also a beneficial prebiotic source with a high inulin content (75% of the carbohydrate complex). Jerusalem artichoke tubers can be administered fresh or powdered with positive effects on intestinal microflora. Jerusalem Artichoke improves the microbial content and the defense and regeneration process of the gut. This study aims to achieve a comprehensive analysis of the importance and need of using Jerusalem artichoke as a beneficial and affordable feed ingredient in combating the negative effects of heat stress on pigs. [ABSTRACT FROM AUTHOR]

The microbial load is of major importance in terms of the quality, sanity, and freshness of the meat. The aim of our study was to perform a microbial risk assessment at warm and chilled swine and broilers carcasses represented by the psychrotrophic bacteria. The research material was represented by swine and broiler carcasses collected in past years. The results showed a variation in swine and broilers microbiological carcasses. The point of interest was based on the microorganisms presented in both species. Microbial load from the surface of carcasses is significantly influenced by the temperature in the chilling room of the slaughterhouse, if the temperature is inadequate, the microbial load is significantly higher. [ABSTRACT FROM AUTHOR]

Background: Dead swine carcass composting is an excellent method for harmless treatment and resource utilization of swine carcass. However, poor biodegradation ability of traditional composting results in poor harmless treatment effect. Researches report that the biodegradation ability of composting can be improved by inoculation with enzyme-producing microorganisms or by inoculation with enzyme preparations. At present, the researches on improving the efficiency of dead swine carcass composting by inoculating enzyme-producing microorganisms have been reported. However, no work has been reported on the development of enzyme preparations for dead swine carcass composting. Methodology: The protease-producing strain was isolated by casein medium, and was identified by 16 S rRNA gene sequencing. The optimal fermentation conditions for maximum protease production were gradually optimized by single factor test. The extracellular protease was purified by ammonium sulfate precipitation and Sephadex G-75 gel exclusion chromatography. The potential for composting applications of the purified protease was evaluated by characterization of its biochemical properties. And based on amino acid sequence analysis, molecular docking and inhibition test, the catalytic hydrolysis mechanism of the purified protease was elucidated. Results: In this study, a microbial protease was developed for swine carcass composting. A protease-producing strain DB1 was isolated from swine carcass compositing and identified as Serratia marcescen. Optimum fermentation conditions for maximum protease production were 5 g/L glucose, 5 g/L urea, 1.5 mmol/L Mg2+, initial pH-value 8, inoculation amount 5%, incubation temperature 30 °C and 60 h of fermentation time. The specific activity of purified protease reached 1982.77 U/mg, and molecular weight of the purified protease was 110 kDa. Optimum pH and temperature of the purified protease were 8 and 50 °C, respectively, and it had good stability at high temperature and in alkaline environments. The purified protease was a Ser/Glu/Asp triad serine protease which catalyzed substrate hydrolysis by Glu, Arg, Ser, Asp and Tyr active residues. Conclusions: In general, the microbial protease developed in this study was suitable for industrial production and has the potential to enhance composting at thermophilic stage. Moreover, the catalytic hydrolysis mechanism of the protease was further analyzed in this study. [ABSTRACT FROM AUTHOR]

African swine fever (ASF) has been considered as one of the most important and devastating swine diseases with high mortality rates. Since effective vaccines and treatment are not available, mass euthanasia of infected and exposed pigs has been known to be the best measure to control ASF. Although composting has been proved to be a safe method for the rapid disposal of animal carcasses during outbreaks, there is no information about the effect of composting on the viability of ASF virus in swine carcasses. This study investigates the survival of the ASF virus in swine carcasses during composting. The findings suggested that the DNA of the ASF virus was detected in all samples tested. On the contrary, infectious ASF virus particles were rapidly destroyed at day 3. [ABSTRACT FROM AUTHOR]

The emergence of high consequence animal diseases usually requires managing significant mortality. A desirable aspect of any carcass management method is the ability to contain and inactivate the target pathogen. The above‐ground burial (AGB) technique was recently developed and proposed as an alternative carcass management method. Here, we investigate the tenacity of swinepox virus (SwPV), as a surrogate model for African swine fever virus (ASFV) in swine carcasses during the AGB process. For this, SwPV was inoculated intrafemorally in 90 adult swine carcasses, which were subsequently disposed under AGB conditions. Bone marrow samples were recovered periodically throughout 12 months and virus viability was assessed by virus isolation (VI), whereas the presence of SwPV DNA was evaluated by quantitative polymerase chain reaction (qPCR). Additionally, an in vitro study assessed the inactivation rate of SwPV, Senecavirus A (SVA), and bovine viral diarrhoea virus (BVDV). Viral suspensions were mixed with bone marrow material and maintained at 21–23°C for 30 days. Virus viability was assessed by VI and viral titration. In the field study, SwPV remained viable only in 11 (55%) bone marrow samples collected on day 7; only viral DNA (and not infectivity) was detected afterwards. SwPV inactivation was estimated to have occurred by day 11. The in vitro testing revealed a variable tenacity of the studied viruses. The viability period was estimated in 28, 80, and 118 days, respectively, for BVDV, SwPV, and SVA. Overall, these findings indicate that the AGB technique was effective in quickly inactivating SwPV. Additionally, the SwPV inactivation rate is comparable to ASFV under field studies and poses a potential model for preliminary ASFV inactivation studies with reduced biosecurity requirements. Moreover, this study contributes to understanding the inactivation kinetics of viruses under specific conditions, which is critical when designing and applying countermeasures in case of biosecurity breaches in sites managing animal mortality. [ABSTRACT FROM AUTHOR]

The feeding of vertebrate scavengers on animal remains has been noted for at least 30 years in relation to the creation of postmortem artifacts. However, the subsequent impact on other necrophagous arthropods, which interact with these remains has not been well documented. Herein, we report a rodent (Rattus spp.) feeding event that altered a perimortem wound beneath the jaw of a decomposing swine carcass. Point trauma such as this has been cited as insufficient for insect colonization; however, the resulting enlargement of the wound due to scavenger feeding has the potential to serve as an oviposition site where colonization would typically not be expected otherwise (i.e., in the absence of a wound or the presence of a small wound such as point trauma). In fact, colonization was observed surrounding the site of scavenger alteration. If scavenger artifacts (e.g., postmortem alteration of remains by feeding) are not identified appropriately and recognized for the effects they may have on necrophagous arthropods then associated assessments in forensic investigations could be affected. [ABSTRACT FROM AUTHOR]

Background: Meat quality and composition traits have become valuable in modern pork production; however, genetic improvement has been slow due to high phenotyping costs. Combining genomic information with multi-trait indirect selection based on cheaper indicator traits is an alternative for continued cost-effective genetic improvement. Methods: Data from an ongoing breeding program were used in this study. Phenotypic and genomic information was collected on three-way crossbred and purebred Duroc animals belonging to 28 half-sib families. We applied different methods to assess the value of using purebred and crossbred information (both genomic and phenotypic) to predict expensive-to-record traits measured on crossbred individuals. Estimation of multi-trait variance components set the basis for comparing the different scenarios, together with a fourfold cross-validation approach to validate the phenotyping schemes under four genotyping strategies. Results: The benefit of including genomic information for multi-trait prediction depended on the breeding goal trait, the indicator traits included, and the source of genomic information. While some traits benefitted significantly from genotyping crossbreds (e.g., loin intramuscular fat content, backfat depth, and belly weight), multi-trait prediction was advantageous for some traits even in the absence of genomic information (e.g., loin muscle weight, subjective color, and subjective firmness). Conclusions: Our results show the value of using different sources of phenotypic and genomic information. For most of the traits studied, including crossbred genomic information was more beneficial than performing multi-trait prediction. Thus, we recommend including crossbred individuals in the reference population when these are phenotyped for the breeding objective. [ABSTRACT FROM AUTHOR]

• Computer vision system for timely image capture for swine carcass assessment. • Pig carcass detection, head & tail detection for pose classification. • System that captures lateral and dorsal views of pig carcasses. • Operating in real-time on edge devices. High animal welfare standards are essential for sustainable pork production. Current on-farm welfare assessments present challenges including cost, time consumption, and biosecurity risks. This study presents the initial step towards an automated animal welfare assessment system for swine carcasses. We introduce a computer vision system for capturing dorsal and lateral views of pig carcasses. The proposed system consists of a tracking and image acquisition system, which captures comprehensive lateral and dorsal views of pig carcasses as they pass by a camera installed at a slaughterhouse. During evaluation, the system achieved an accuracy of 92.5 % (74 out of 80 detections in a video with 40 carcasses) with minimal false positives and undetected positions, operating in real-time at 41.65 frames per second (FPS) with high confidence. The Detection manager module led to a remarkable reduction in erroneous detections, dropping from 38.75 % to 3.75 %. In addition to tail position data, leveraging head position data as an auxiliary mechanism substantially reduced missed detections to 6.25 % and erroneous detections to 1.25 %. This underscores the critical role of auxiliary mechanisms in enhancing system performance. This system marks the initial phase in developing an automated welfare assessment tool, paving the way for real-time welfare monitoring of carcasses in pork production. [ABSTRACT FROM AUTHOR]

Salmonellosis is one of the most important food‐borne outbreaks that occurs in the EU/EEA. From the first production stages at slaughter, meat is susceptible to spoilage and can be a substrate for the pathogenic microorganisms growth. Among the pathogens, the presence of Salmonella is mainly due to mishandling during the evisceration stage. For the year 2019, according to the collected data from MSs, on the 17.9% of all food‐borne outbursts, the presence Salmonella was confirmed. Pork meat is considered as one of the four most commonly reported foods in cases of salmonellosis. For the training purposes of this project, Salmonella isolation and identification along with RA for carcass contamination, was performed. Pig carcasses were sampled using the non‐destructive technique. The sampling took place post dressing and before the stage of chilling. For the Salmonella detection, a three phases process was performed (pre‐enrichment, enrichment, isolation). A total of 757 samples were collected, 19 were found to be positive for Salmonella. The most common was found to be Salmonella Derby, which was identified eight times. The main objective of the project was to determine the prevalence of Salmonella spp. in swine carcasses. Moreover, certain parameters were evaluated in terms of their influence on the prevalence of Salmonella. A stochastic simulation model was developed in Microsoft Office Excel 2019 by using the add‐in @Risk v.8.1. The prevalence was estimated to be 2.6%. For the pigs sampled, the average value of the distance from farm to slaughterhouse was 200.92 km. Additionally, the average weight of the carcasses was 127.97 kg. The prevalence of Salmonella between the samples that came from farms with a distance above the average, was higher by 1.7 units, while the prevalence for the samples with weight above the average was higher by 0.2 units. According to the stochastic model, it is specified that the prevalence is higher with greater distance, and there is an 8.1% probability the prevalence will exceed the legislation's – hygiene criteria. In addition, the prevalence of Salmonella was shown to increase, as well in the case of samples from weightier animals, but to a lesser extent. [ABSTRACT FROM AUTHOR]

The relationship between total condemnations and lesions scores highlights the financial impact of tail lesions due to condemnations rates, following the results presented by Valros et al. and Marques et al., who proved that higher tail lesion scores reflected higher odds for carcass condemnation [[12], [14]]. Tail Scores Each tail was classified based on two different lesion scores: tail lesion and tail scarring. Discussion We scored tail lesions and tail scarring at the slaughterhouse on pigs coming from different production systems and subjected to different tail-docking practices, to assess whether they are related to condemnations (either total or local). Keywords: swine; meat inspection; tail biting; tail length; production system; post-mortem findings; carcass condemnations EN swine meat inspection tail biting tail length production system post-mortem findings carcass condemnations N.PAG N.PAG 14 04/26/22 20220415 NES 220415 1. [Extracted from the article]

Pork is one of the most common foods causing microbial foodborne diseases. Since pork directly enters the market after slaughtering, the control of microbial contamination in the slaughtering processes is the key to ensuring the quality and safety of pork. The contamination level of Escherichia coli , a health-indicator bacterium, can reflect the risk level of potential pathogens. In order to assess the E. coli exposure risk of pork during slaughtering and to identify the key control points, we established an E. coli quantitative exposure assessment model for swine-slaughtering processes in slaughterhouses of different sizes. The model simulation data indicated the E. coli contamination pattern on the surfaces of swine carcasses during slaughtering. The changes in E. coli contamination were analyzed according to the simulation data of each slaughtering process. It was found that the number of E. coli after trimming in big and small slaughterhouses increased to the maximum values for the whole processes, which were 3.63 and 3.52 log10 CFU/100 cm2, respectively. The risk contribution of each slaughtering process to the E. coli contamination on the surface of terminal swine carcasses can be determined by correlation analysis. Because the absolute value of correlation coefficient during the trimming process was maximum (0.49), it was regarded as the most important key control point. This result can be further proved via the multilocus sequence typing of E. coli. The dominant sequence type before trimming processes was ST10. ST1434 began to appear in the trimming process and then became the dominant sequence type in the trimming and pre-cooling processes. The model can provide a theoretical basis for microbial hygiene supervision and risk control in swine-slaughtering processes. [ABSTRACT FROM AUTHOR]

Disposal of animal carcasses by co-composting with animal waste usually selected conventional carbon to nitrogen (C/N) ratio around 25:1, in which the compost is widely used throughout the world. In this study, the pig carcass tissue blocks were sampled for composting at a laboratory scale to evaluate the effect of C/N ratio on the pig carcass compost. The time of thermophilic phase between 60 °C – 70 °C at a lower C/N ratio of 20:1 was significantly longer than that at the conventional C/N ratio, and it was the only one with the temperature beyond 70 °C that lasted for 2 days. Germination index and T value (the final C/N ratio / the initial C/N ratio) of the treatment with a C/N ratio of 20:1 were 94.67% and 0.69, respectively, meeting the standards of animal carcass compost. The degradation rate was 75.67%, and no significant difference was obtained as compared to the conventional C/N ratio groups. Organic fertilizer produced from the treatment with a C/N ratio of 20:1 was selected to evaluate the fertility by pot experiment of Cayenne pepper compared with chemical fertilizer. The results showed that organic fertilizer from this treatment could significantly improve the growth of Cayenne pepper. Overall, the use of the lower C/N ratio of 20:1 in the disposal of pig carcass by co-composting with swine manure could achieve the similar degradation rate as well as the maturity and stability of organic fertilizer as compared with the traditional C/N ratio at lab scale. [ABSTRACT FROM AUTHOR]

Acari community structure and function associated with delayed pig carrion decomposition has not been examined. In this study, 18 swine carcasses were studied in central Texas, USA, during two consecutive summers (2013 and 2014). Samples of ca. 400 g soil were collected from beneath, aside, and 5 m away from each pig carcass over 180 days. Mites from soil samples were extracted using Berlese funnels and identified to order and family levels and classified according to ecological function. In total 1565 and 1740 mites were identified from the 2013 and 2014 soil samples, respectively. Significant differences were determined for mite community structure at order and family levels temporally on carrion (e.g., day 0 × day 14) regardless of treatments and between soil regions where mites were collected (e.g., soil beneath vs. soil 5 m away from carrion). However, no significant differences were found in mite community structure at the order level between pig carrion with and without delayed Diptera colonization (i.e., treatments). Analysis at the family level determined a significant difference across treatments for both summers. Ecological function of mites did not change significantly following the delayed decomposition of pig carcasses. However, detritivores and fungivores were significant indicator groups during the pig carrion decomposition process. Furthermore, 13 phoretic mite species associated with eight forensically important beetle species were documented. Data from this study indicated that the rate of nutrient flow into the soil impacted associated arthropod communities; however, detecting such shifts depends on the taxonomic resolution being applied. [ABSTRACT FROM AUTHOR]

The article presents the results of the analysis of the frequency of PERV retroviruses of subtypes A and C in populations of pigs of Ukrainian and foreign breeds. Analysis of the genome of retroviruses (PERV) subtypes A and C in animals of the studied breeds revealed their different frequency. Animals without both subtypes of the virus were present in all study groups. The highest relative numbers were observed in the group of wild pigs (86%), the lowest – in the groups of Poltava meat and Pietren breeds. The hypothesis of an increase in the level of fat deposition in pigs with retrovirus (PERV) during domestication of pigs was investigated. Integration of the virus caused a mutation in the genes responsible for adipopexis, which led to an increase in fat in the carcass and can be isolated by selection during breeding. However, we did not find a clear correlation in pigs of different productivity between the level of fat deposition in pig carcasses and the presence of PERV-A and PERV-B in their genome of modern breeds of different productivity. The distribution of PERV of two subtypes in pigs of Ukrainian breeds determined in the study provides information on the possibility and expediency of using each of them for xenotransplantation. On the other hand, this information can be the basis for the selection of founding breeds to create pig lines free from the endogenous retroviral genome. [ABSTRACT FROM AUTHOR]

The study analyzed information from the classification of swine slaughter carcasses based on the SEUROP system for the period 2016–2019. Subject of the analyses were quality characteristics of 300 623 carcasses of fattening pigs from different hybrid combinations with the Large white, Landrace, Duroc, Hampshire and Pietrain breeds. The animals were reared and slaughtered in a slaughterhouse in the Northeastern part of the country. The lean meat percentage for the studied period was 56.26%. Average weight of qualified slaughter carcasses was 84.517 kg. Qualified slaughter carcasses from the E class occupied 78.81%, followed by those in class U − 20.81%, S − 0.37%, R and O - 0.11%. During the individual years of the study, a reduction of carcasses in class S and E was found by 0.3% and 1.36%, respectively. The relative share of class U had increased from 18.67 in 2016 to 20.82% in 2019. No significant differences in carcass weight were found within the class. Classified carcasses of all weight categories were classified in Class E, the percentage of lean meat falling from 56.42% (<60 kg) to 55.30% in the highest class (> 100). [ABSTRACT FROM AUTHOR]

An introduction of a Foreign Animal Disease (FAD) like African Swine Fever Virus (ASF) would be financially devastating. For example, ASF, a highly contagious pathogen with high mortality rates, is a World Health Organization reportable disease that has recently been spreading across Asia and Europe. Control of ASF would likely require mass euthanasia of infected and exposed animals similar to the United Kingdom's elimination of Foot and Mouth Disease (FMD). Subsequent disposal of infectious carcasses must adequately eliminate the virus and prevent further transmission of the disease. Although composting swine carcasses is widely used throughout the industry, limited data is available describing pathogen survival or elimination during this process. While current methods have evaluated the composting of swine carcasses under temperature‐controlled settings, they have not considered the effects of adverse weather conditions (e.g., cold winter conditions) where composting is routinely performed. This study utilized preprocessing (grinding) of swine carcasses prior to composting, which decreases the amount of required carbon material and land space. The ability of composting to reduce the level of viral nucleic acid during cold weather conditions and the risk of environmental contamination that may occur during preprocessing was evaluated. In this study, pigs challenged with Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) and Porcine Epidemic Diarrhea Virus (PEDV), common domestic diseases, before euthanasia provided infectious carcasses containing pathogen surrogates. Composting of preprocessed carcasses achieved adequate temperatures necessary to eliminate FAD and common swine pathogens during cold weather conditions (monitored by compost temperature over time, virus diagnostic testing, and swine bioassay for PRRSV and PEDV). Under the conditions of this study, composting preprocessed carcasses presents minimal risk to air and groundwater contamination. In conclusion, composting preprocessed euthanized swine under adverse weather conditions is a safe and feasible option for mass disposal of infected carcasses. [ABSTRACT FROM AUTHOR]

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AIM: to describe the methodology of calculating of Clarcs of energy distribution/protein transformation along the trophic chain “fodder – carcass meat” (in the case – “fodder-meat from M. longissimus dorsi”). METHODS: Experiment for fattening of 21 pigs (Danube white breed) from 30 to 110 kg live weight in 2 phases (30–60 and 60–110 kg). Controlled: Total fodder consumption, total metabolizable energy and total crude protein consumption, total weight and chemical composition of Musculus longissimus dorsi in the end of experiment. RESULTS: Clarc of energy distribution – CED (MEfodder – GEmeat of M. longissimus dorsi) – 0.0014 (0.14%); Clarc of protein transformation – CPT (CPfodder – CPmeat of M. Longissimus dorsi) – 0.0038 (0.38%). [ABSTRACT FROM AUTHOR]

African Swine Fever (ASF) is an infectious lethal disease affecting domestic pigs and wild boar. In the EU the infection perpetuates predominantly in wild boar populations. ASF control comprises wild boar population reduction measures,e.g. pre‐emptive culling in delineated zones, called white zones (WZ).TheseWZ areplaced geographically adjacent to an area with ASF circulating in wild boar (ASF positive area).The ideal WZ would be depopulated of wild boar without possibility of recolonization. However, WZ may still harbour live wild boar after its establishment and the functionality of the WZ inherently foresees ASF enteringit. But the spread of the infection is expected tostop within an effective WZ. The concept mustnotmatch legislative zones, likewise infected area, Part I, Part II, etc. In order to compare different approaches to implement a WZ(e.g. targets and speed of population reduction in the WZ, width of the WZ, and distance of the WZ from the ASF‐positive area), an individual‐based spatially explicit model was adjusted to four historic WZ‐like situations in the EU, i.e. Estonia 2014, Latvia 2016, Czech Republic 2017, and France 2018. The model was used to simulate the reported spatio‐temporal layout and targeted measures. The stochasticity of the model provided understanding of the general efficiency of these WZ. Alternatives of the local measures were simulated as scenarios to identify caveats of the settings and derive improvements in future applications. The simulation outcome suggests issues to be addressed in implementing future WZ: i) distance between ASF‐positive area and the WZ was adequate if adapted to the speed of propagation according to the local wild boar density, and the time horizon of depopulation measures envisaged for the WZ; ii) the width of the WZ was adequately set if everywhere it was preventedthat short infection chains already led out of the zone, iii) the WZ around focal introductions was most efficient if depopulated by culling the maximum of a defined (or fenced) population in shortest time with minimal disturbance, for instance, by trapping, sharp shooting or using silencers.Aspects of density, timing and spatial distribution in relation to the efficiency of WZ layout are explored. [ABSTRACT FROM AUTHOR]

Genetic modification of corn has enhanced the use of different corn hybrids in animal agriculture. Enogen Feed corn, developed by Syngenta Seeds (Downers Grove, IL), has potential for use in livestock diets due to increase α-amylase enzyme in the corn thus improving starch digestibility. In addition, the pelleting process also increases starch gelatinization which increases its digestibility by the pig, increasing growth rate and improving feed efficiency. Therefore, pelleting Enogen Feed corn might prove to provide a greater response in growth performance than conventional yellow dent corn. Thus, the objective of this experiment was to determine the effects of corn source and diet form on growth performance and carcass characteristics of finishing pigs. A total of 288 pigs (53.0 ± 0.5 kg) were used with eight pigs per pen and nine pens per treatment in a 72-d study. Treatments were arranged in a 2 × 2 factorial with main effects of corn source (Enogen Feed corn or conventional yellow dent corn) and diet form (meal or pellet). For overall (d 0 to 72) performance, no interactions between corn source and diet form were observed. There was a tendency (P < 0.10) for slightly improved average daily gain (ADG) and gain:feed ratio (G:F) for pigs fed conventional yellow dent corn compared to those fed Enogen Feed corn. For feed form, pigs fed pelleted diets had increased (P < 0.001) ADG and G:F compared to pigs fed meal diets. For carcass characteristics, pigs fed pelleted diets had increased hot carcass weight compared to pigs fed meal diets (P < 0.001). In summary, feeding pelleted diets to finishing pigs increased ADG and improved feed efficiency compared to those fed meal-based diets. There were no major differences between observed corn sources or interactions between corn source and diet form on growth performance. [ABSTRACT FROM AUTHOR]

This experiment investigated the effects of protease supplementation to low amino acid (AA) diets containing phytase on pig growth performance, postweaning intestinal health and carcass characteristics. A total of 936 weaned pigs (21 d of age, initial BW 5.87 ± 0.31 kg) were used in a 2 × 2 factorial design comparing the main effects of AA supply [standard feeding program: balanced for all nutrients with adjustment of Ca and P due to inclusion of phytase (2,500 FTU/kg in Phase 1 to 4; 500 FTU/kg in Phase 5 to 9) vs. low AA feeding program: 15% lower standardized ileal digestible lysine with relative reduction of all other essential AA] and protease level (0 vs. 0.0125%). Pens were assigned to dietary treatment according to a randomized complete block design with 26 pigs per pen and nine replicates per dietary treatment. Feed and water were provided on an ad libitum basis for all phases throughout the wean-to-finish period. Feed intake and body weight were determined every 2 wk during nursery period and monthly in the grow-finish period. Intestinal health in the first 17 d was assessed based on lactulose:mannitol ratio (L:M), serum IgA, and pen diarrhea assessment. Overall, pigs fed standard wean-to-finish diets had greater (P < 0.05) ADG and G:F than pigs fed low AA diets. Pig growth performance was not different throughout the wean-to-finish period with or without protease supplementation and with no interaction between AA supply and protease supplementation. There were no differences among dietary treatments for carcass characteristics. No difference was observed for urinary L:M and serum IgA; however, the L:M ratio was approximately 32% lower in pigs fed low AA diets + protease compared with pigs fed standard and low AA diets at d 5 and d 17 postweaning. Pigs fed protease supplemented diets had lower incidence of diarrhea (χ 2 < 0.05) compared with pigs fed diets without protease. Results of the experiment indicate that dietary protease supplementation benefits intestinal health of nursery pigs. [ABSTRACT FROM AUTHOR]

Two experiments were conducted to determine the effects of Mn source and level on finishing pig growth performance and carcass characteristics. Dietary treatments were arranged in a 2 × 3 factorial with main effects of Mn source (MnSO4; Eurochem, Veracruz, Mexico, or Mn hydroxychloride (IBM); Micronutrients, Indianapolis, IN) and increasing added Mn (8, 16, and 32 mg/kg of complete diet). The trace mineral premix was formulated without added Mn. Copper was added to all diets at 10 and 150 mg/kg in Exp. 1 and 2, respectively. In both experiments, 1,994 pigs (PIC; 337 × 1050; initially 34.5 ± 0.50 and 40.0 ± 0.77 kg) were used with 27 pigs per pen and 12 replicates per treatment. Diets were corn-soybean meal-distillers dried grains with solubles-based and were fed in four phases. In Exp. 1, there was a marginal Mn source × level interaction (quadratic, Ρ = 0.057) for overall feed efficiency (G:F), with a decrease then increase in pigs fed IBM, but G:F increased with increasing Mn from MnSO4. There was no evidence for Mn source differences for average daily gain (ADG), average daily feed intake (ADFI), or body weight (BW), but pigs fed 16 mg/kg Mn, regardless of source, tended to have decreased (quadratic, Ρ < 0.05) ADG and final BW compared with other levels. For carcass yield, there was a tendency for Mn source × level interaction (quadratic, Ρ = 0.075), where carcass yield did not change by increasing MnSO4 but was greatest for 16 mg/kg Mn from IBM. Loin depth increased (source × level, Ρ = 0.041) for pigs fed increasing Mn from MnSO4 but decreased when Mn was increased from IBM. Pigs fed the intermediate level of Mn tended to have the lightest HCW (quadratic, Ρ = 0.071) and decreased loin depth (quadratic, Ρ = 0.044). Liver Mn concentration increased (linear, Ρ = 0.015) as added Mn increased and tended to be greater (P = 0.075) when supplied by MnSO4 compared with IBM. In Exp. 2, there was no (P > 0.10) Mn source × level interaction observed for ADG, ADFI, and G:F. Pigs fed IBM had increased (P < 0.05) final BW, ADG, and ADFI compared with pigs fed MnSO4. Pigs fed 16 mg/kg of Mn tended (P = 0.088) to have reduced ADFI when compared with pigs fed 8 and 32 mg/kg of Mn. In conclusion, there appears to be little benefit in growth performance by feeding more than 8 mg/kg of added Mn. When high levels of Cu were fed in Exp. 2, pigs fed IBM had improved growth performance when compared with those fed MnSO4. Further research is needed to understand the potential benefits of Mn hydroxychloride fed in conjunction with high levels of Cu on pig growth performance. [ABSTRACT FROM AUTHOR]

Mass mortality events can saturate an environment with decomposing remains. We lack an understanding of such perturbations and the extent of disruption imposed on the local ecosystem. During such instances, normal patterns of colonization and decomposition of remains by necrophagous arthropods can be retarded resulting in delayed colonization due to the proximity of multiple corpses. Therefore, this study was initiated to investigate the impact of carcasses in close proximity with delayed arthropod access on the associated microbial metabolic community profiles and those in the soil immediately under and adjacent to the remains. Field trials were conducted during the summers of 2013 and 2014 in Texas, USA. Three groups of pig carcasses were accessed: those immediately colonized by dipteran species (i.e., primary invertebrate consumers of carrion) and those experiencing delayed dipteran access by 7 or 14 days. Meteorological data for 2013 showed that the mean temperature was 30.59 ± 7.81 °C, accumulated degree hours (ADH) was 30,131.50, and precipitation was 39.12 mm, while in 2014, the mean temperature was 29.27 ± 6.49 °C, ADH was 28,090.70, and total precipitation was 171.45 mm. Bacterial function on the remains in terms of carbon utilization was significantly different between the years as well as between carcass groups, suggesting an inter-kingdom correlation between bacteria and dipteran activity. In contrast, microbial function in the soil was inconsistent between trials, indicating stochasticity within the system, probably due to differences in abiotic factors such as temperature, ADH, and rainfall. [ABSTRACT FROM AUTHOR]

Data for loin and backfat depth, as well as carcass growth of 126,051 three-way crossbred pigs raised between 2015 and 2019, were combined with climate records of air temperature, relative humidity, and temperature–humidity index. Environmental covariates with the largest impact on the studied traits were incorporated in a random regression model that also included genomic information. Genetic control of tolerance to heat stress and the presence of genotype by environment interaction were detected. Its magnitude was more substantial for loin depth and carcass growth, but all the traits studied showed a different impact of heat stress and different magnitude of genotype by environment interaction. For backfat depth, heritability was larger under comfortable conditions (no heat stress), as compared to heat stress conditions. Genetic correlations between extreme values of environmental conditions were lower (∼0.5 to negative) for growth and loin depth. Based on the solutions obtained from the model, sires were ranked on their breeding value for general performance and tolerance to heat stress. Antagonism between overall performance and tolerance to heat stress was moderate. Still, the models tested can provide valuable information to identify genetic material that is resilient and can perform equally when environmental conditions change. Overall, the results obtained from this study suggest the existence of genotype by environment interaction for carcass traits, as a possible genetic contributor to heat tolerance in swine. [ABSTRACT FROM AUTHOR]

The quality of carcasses and meat has been studied in hybrid pigs obtained by using Duroc, Pietrain and Pietrain x Duroc boars of French origin, but also of Large White x Landrace x Pietrain breeders of local origin. A higher carcass weight of 83.67 kg was formed in hybrids resulting from racial combinations, where the paternal form was the Pietrain x Duroc boar. The tests performed showed that the length of the carcasses was 13.96 cm longer and the hams were more globular compared to the control group. The thickness of the bacon layer on the back was 20 mm at a weight of 114 kg, being reduced by 2 mm. The amount of protein in the meat of hybrid pigs in the experimental groups varied between 19.91 and 20.28%, which indicates that significant differences have not been detected. The obtained results show that the quality of the carcasses is under the influence of the genotype of boars, and the potential of hybrids depends on the combinatorial capacity of the maternal and paternal breeds in the hybridization process. [ABSTRACT FROM AUTHOR]

Renewable energy can boost the growing population's need and rapid budgetary development. To reduce fossil fuel consumption is the initial purpose of renewable and sustainable energy, producing valuable bio-based products. The fermenters, using for pretreatment of swine manure, and involvement of swine carcasses are reported to enhance organic loading rate followed by improved biogas yield on household digesters. The compositions such as animal residues, pathogenic microbes, pharmaceutical residues and nutrient compositions including undigested feed are still confused. Therefore, it is mandatory to optimize and stabilize anaerobic practice and digestate filtration purification for consequential fertilizer consumption. The effective bio-methane recovery from energy-rich compounds is challenging due to slow degradation procedures. The pretreatment procedure could enhance lipid depolymerization and improve anaerobic fermentation. This article deeply focuses on biodegradation of swine manure. The components of this manure were evaluated and established several approaches to improve biogas production. Furthermore, recycling of co-digestates was discussed in detail as fertilizer consumption including hygienic aspects of manure and pretreatment strategies of biomass residues. Key points: • Co-digestion of manure and carcasses enhance bio-methane production. • Removel of ammonia from biogas digester may improve bio-methane gas. • A strong antimicrobial influence has been reported on biogas production. [ABSTRACT FROM AUTHOR]

Escherichia coli is part of the normal microflora of the intestinal tract of humans and warm-blooded animals, but its presence in raw material and food of animal origin is considered as fecal contamination and can be very dangerous for consumers. The determination of the number of E. coli in raw material and food is important because among them can be pathogenic strains. The most dangerous strains are considered enterohemorrhagic E. coli as a causative agent of severe bloody diarrhea and hemorrhagic uremic syndrome in humans through the production of Shiga-toxin, which is the main virulence factor, responsible for disease. The aim of this study was to identify the prevalence of Shiga toxin-producing strains of E. coli (STEC) from swabs of beef and swine carcass in slaughterhouses in Ukraine and characterize their genes, which are responsible for pathogenic properties. A total of 230 samples of swabs from beef (130) and swine (100) carcasses were obtained from 5 slaughterhouses in Ukraine between 2012 and 2015. Samples of swabs from carcasses were randomly selected at the final point of the process after the final washing of the carcass from the following areas: distal hind limb, abdomen (lateral and medial) from swine carcasses, brisket, flank and flank groin areas from beef carcasses. All samples were examined by culture-dependent method, after that each positive isolate of STEC was analyzed by multiplex PCR to detect the stx1, stx2, and eae genes. Out of 230 collected samples, seven (7.2%) were contaminated with STEC. The highest prevalence of STEC was found in swabs from beef carcasses (8.1%) in comparison to swabs from swine carcasses (5.7%). The stx1 gene was the predominant gene detected in all STEC positive samples. The eae gene was found in one of the examined isolates from beef carcass. Three isolates from swabs of beef carcass carried both stx1 and stx2 genes, one isolate showed association between stx1 and eae genes, one isolate was positive for stx1 gene only. In swabs from swine carcasses (2 isolates) stx1 and stx2 genes were presented simultaneously. The results of this study suggested that fresh raw meat could be a potential vehicle for transmission of the Shiga toxin-producing strain of E. coli to humans. This is the first report of STEC prevalence in beef and swine carcasses in Ukraine and these data will be valuable for microbiological risk assessment and help the appropriate services to develop strategies to mitigate health risk.

Background: Each death event can be characterized by its associated microbes – a living community of bacteria composed of carcass, soil, and insect-introduced bacterial species – a necrobiome. With the possibility for close succession of these death events, it may be beneficial to characterize how the magnitude of an initial death event may impact the decomposition and necrobiomes of subsequent death events in close proximity. In this paper we hope to characterize the microbial communities associated with a proximate subsequent death event, and distinguish any changes within those communities based on the magnitude of an initial death event and the biomass of preexisting carcass (es) undergoing decomposition. For this experiment, 6 feral swine carcasses in containers were placed in the vicinity of preexisting and ongoing carcass decomposition at sites of three different scales of decomposing carcass biomass. Swab samples were collected from the skin and eye sockets of the container pigs and subjected to 16 s rRNA sequencing and OTU assignment. Results: PERMANOVA analysis of the bacterial taxa showed that there was no significant difference in the bacterial communities based on initial mortality event biomass size, but we did see a change in the bacterial communities over time, and slight differences between the skin and ocular cavity communities. Even without soil input, necrobiome communities can change rapidly. Further characterization of the bacterial necrobiome included utilization of the Random Forest algorithm to identify the most important predictors for time of decomposition. Sample sets were also scanned for notable human and swine-associated pathogens. Conclusions: The applications from this study are many, ranging from establishing the environmental impacts of mass mortality events to understanding the importance of scavenger, and scavenger microbial community input on decomposition. [ABSTRACT FROM AUTHOR]

Background: The objectives of this study were to evaluate genomic and microbial predictions of phenotypes for meat quality and carcass traits in swine, and to evaluate the contribution of host-microbiome interactions to the prediction. Data were collected from Duroc-sired three-way crossbred individuals (n = 1123) that were genotyped with a 60 k SNP chip. Phenotypic information and fecal 16S rRNA microbial sequences at three stages of growth (Wean, Mid-test, and Off-test) were available for all these individuals. We used fourfold cross-validation with animals grouped based on sire relatedness. Five models with three sets of predictors (full, informatively reduced, and randomly reduced) were evaluated. 'Full' included information from all genetic markers and all operational taxonomic units (OTU), while 'informatively reduced' and 'randomly reduced' represented a reduced number of markers and OTU based on significance preselection and random sampling, respectively. The baseline model included the fixed effects of dam line, sex and contemporary group and the random effect of pen. The other four models were constructed by including only genomic information, only microbiome information, both genomic and microbiome information, and microbiome and genomic information and their interaction. Results: Inclusion of microbiome information increased predictive ability of phenotype for most traits, in particular when microbiome information collected at a later growth stage was used. Inclusion of microbiome information resulted in higher accuracies and lower mean squared errors for fat-related traits (fat depth, belly weight, intramuscular fat and subjective marbling), objective color measures (Minolta a*, Minolta b* and Minolta L*) and carcass daily gain. Informative selection of markers increased predictive ability but decreasing the number of informatively reduced OTU did not improve model performance. The proportion of variation explained by the host-genome-by-microbiome interaction was highest for fat depth (~ 20% at Mid-test and Off-test) and shearing force (~ 20% consistently at Wean, Mid-test and Off-test), although the inclusion of the interaction term did not increase the accuracy of predictions significantly. Conclusions: This study provides novel insight on the use of microbiome information for the phenotypic prediction of meat quality and carcass traits in swine. Inclusion of microbiome information in the model improved predictive ability of phenotypes for fat deposition and color traits whereas including a genome-by-microbiome term did not improve prediction accuracy significantly. [ABSTRACT FROM AUTHOR]

Microbial community assembly (MCA) of both human and nonhuman animal carcasses provides indicators useful for estimating the postmortem interval (PMI) in terrestrial settings. However, there are fewer studies estimating postmortem submersion intervals (PMSIs) in aquatic habitats. No aquatic studies to date assessed MCA in the context of a death investigation, with all previous studies focusing on important basic ecological questions. Within the context of a cold case investigation, we performed an experiment using replicate adult swine carcasses to describe postmortem MCA variability within a nonflowing aquatic habitat. Using high‐throughput sequencing of carcass postmortem microbiomes, we described MCA variability and identified key taxa associated with decomposition in an aquatic habitat similar to the cold case body recovery site. We also modeled key taxa for estimating PMSIs, modeling within ±3 days (mean square error) postmortem using random forest regression. Our findings show significant changes in microbial communities as decomposition progressed, and several taxa were identified as important indicator taxa which may be useful for future estimates of PMSI. While descriptive, this study provides initial findings quantifying MCA variability within a nonflowing aquatic habitat. Within the context of the cold case investigation, we discuss how postmortem microbial samples collected at the time of body recovery could have been an important piece of evidence for understanding the PMSI of recovered remains. Additional experimental studies are needed to explicitly test and identify mechanisms associated with postmortem MCA variability in other habitats and under different temperature (e.g., seasons) conditions. [ABSTRACT FROM AUTHOR]

Feeding diets high in corn distillers dried grains with solubles (DDGS) before market can negatively impact carcass yield, hot carcass weight (HCW), and belly fat iodine value (IV). Two experiments were conducted to evaluate the effects of switching from DDGS-based to corn-soybean meal (CSBM)-based diets at increasing intervals (withdrawal periods) before harvest on finishing pig performance and carcass characteristics. Diets in both experiments contained either 0% or 30% DDGS and were balanced for net energy (NE). In Exp. 1, 985 pigs (initially 99.6 kg body weight [ BW ]) were used with 12 pens per treatment. The four treatments were increasing DDGS withdrawal periods: 28, 21, 14, or 0 d (no dietary switch) before marketing. All pens were marketed by removing the 17% heaviest pigs 21 d before slaughter and the remaining 83% all slaughtered 21 d later. Overall, there was no evidence for treatment differences on final BW, average daily feed intake, or feed efficiency (G:F; P > 0.10); however, average daily gain (ADG) increased (linear, P = 0.022) and belly fat IV decreased (linear, P = 0.001) the longer pigs were fed CSBM diets. There was no evidence for differences for HCW (P > 0.10); however, carcass yield increased (linear, P = 0.001) with increasing time following the switch to CSBM. Backfat depth decreased and percentage lean increased as CSBM feeding time increased (quadratic; P < 0.05). In Exp. 2, 1,158 pigs (initially 105 kg BW) were used in a 35-d study. There were 15 pens per treatment and four treatments of increasing DDGS withdrawal periods: 35, 28, 14, or 0 d (no dietary switch). All pens were marketed by removing the 15% heaviest pigs on day 28, the 28% heaviest pigs on day 14, and a final marketing of approximately 57% of starting barn inventory. There was no evidence that final BW, ADG, G:F, or HCW differed among dietary treatments (P > 0.10). Average daily feed intake and carcass yield increased and belly fat IV decreased (P < 0.050); the longer pigs were fed CSBM. In conclusion, growth performance was minimally impacted following dietary switch from DDGS- to CSBM-based diets, possibly due to similar dietary NE. For carcass yield and belly fat IV, the optimal time to make a dietary switch from high to low fiber appears to be linear in nature and at least 28 d before marketing. [ABSTRACT FROM AUTHOR]

Corn distillers dried grains with solubles (DDGS) are known to negatively impact carcass yield and fat quality, thus finishing pigs may need to be switched from diets containing DDGS to corn–soybean meal (CSBM) diets before marketing (DDGS withdrawal). A total of 860 finishing pigs (PIC C48 or L42 × 327; initially 66.2 kg body weight, BW) were used in a 76-day experiment to evaluate the effects of DDGS withdrawal periods at increasing intervals before harvest. Pen served as the experimental unit, and there were seven replicate pens per treatment with 23 to 25 pigs per pen. Pens were blocked by BW and allotted to one of five dietary treatments differentiated by the DDGS withdrawal period: 76, 42, 27, 15, or 0 day before harvest. Diets contained 40% DDGS from 22 to 66 kg prior to the experiment, 0% or 35% DDGS during the experiment from ~66 to 82 kg, and 0% or 30% DDGS until the completion of the trial. Diets were not balanced for net energy. Linear and quadratic response to time following dietary switch was evaluated using PROC GLIMMIX. For the overall period (day 76 prior to market to day 0), as withdrawal period increased, average daily gain (ADG) and final BW increased (linear, P < 0.002) and feed efficiency (G:F) improved (quadratic, P = 0.019). Average daily feed intake increased (quadratic, P = 0.030) as withdrawal period increased. There was an increase (linear P = 0.010) in hot carcass weight (HCW), with a marginally significant increase in carcass yield (linear, P = 0.094) with increasing withdrawal period. Loin depth and lean percentage did not demonstrate any evidence for treatment differences (P > 0.132). Backfat increased (linear, P = 0.030) with increasing withdrawal period. Finally, iodine value (IV) of belly fat was decreased (linear, P = 0.001) with increased withdrawal period. In conclusion, switching from a DDGS-based diet to a CSBM-based diet for longer periods before slaughter increased ADG and improved G:F, resulting in increased HCW. After diets were switched from DDGS to CSBM, pigs demonstrated an increase in intake, likely due to the ability to consume high volumes of feed after consuming high fiber (DDGS) diets. Belly fat IV was decreased as the length of time after dietary change was increased, with the lowest IV resulting from pigs that consumed CSBM for the entire experimental period. [ABSTRACT FROM AUTHOR]

The present study investigated the effects of immunocastration and housing conditions on carcass, meat, and fat quality traits. Immunocastrates (IC, n = 48), entire (EM, n = 48), and surgical castrates (SC, n = 48) male pigs were reared under three different housing conditions. The conditions were standard (n = 36), enriched (n = 36, twice as much space as standard and additional outdoor access), or standard with repeated social mixing (n = 72). Pigs of the IC group were vaccinated at the age of 12 and 22 wk. The animals were slaughtered in four batches, balanced for sex category and housing, at the age of 27 wk reaching 124.7 ± 1.0 kg. Immunocastration led to increased fat deposition (i.e. thicker subcutaneous fat at different anatomical locations, more leaf fat, fatter belly in IC than EM, P < 0.05) but did not affect muscularity traits. As a result, EM exhibited higher and SC lower (P < 0.05) carcass leanness than IC. Fatty acids composition of either subcutaneous or intramuscular fat (IMF) agreed with general adiposity, that is, IC were intermediate between EM and SC exhibiting the lowest and highest fat saturation (P < 0.05), respectively. Compared to SC, EM exhibited higher (P < 0.05) levels of muscle oxidation and collagen content than SC, with IC taking an intermediate position in the case of the level of peroxidation and collagen content, or closer to SC as regards to oxidation of muscle proteins (i.e. carbonyl groups). Meat quality (including marbling score, cooking loss, subjective color redness, and chroma) of IC was similar to EM, and both differed (P < 0.05) from SC. However, IC and SC had less (P < 0.05) tough meat than EM, consistent with protein oxidation. The effect of housing was less evident. Mixing of pigs resulted in lower (P < 0.05) carcass weight and fatness in all sex categories with lower (P < 0.05) oleic and higher (P < 0.05) arachidonic acid in IMF of EM. [ABSTRACT FROM AUTHOR]

The present study evaluated anaerobic co-digestion of swine manure and swine carcasses for biogas yield and inactivation/behaviour of pathogens purpose. Biochemical Methane Production tests were performed with samples containing ratios of 3, 7.5 and 15 kgcarcass m−3manure. For pathogens inactivation experiments known amounts of model microrganisms (sensitive and resistant) were artificially inoculated in anaerobic reactors at 24°C and 37°C. The addition of carcass resulted in an increase until 119% of biogas yield compared to swine manure mono-digestion. Salmonella enterica, Escherichia coli and PCV2 were reduced >3log10 (24°C or 37°C) during 30 days. At 37°C, MS2 and PhiX-174 were reduced 3log10 and 1.8log10, respectively. At 24°C, MS2 reduced 1.5 log10 and PhiX-174 did not present any decay over 30 days. Considering the most resistant biomarkers pathogens, as bacteriophage, we recommend the swine carcasses pre-treatment, such as high temperatures, for sanitary security. [ABSTRACT FROM AUTHOR]

Post weaning multi systemic wasting syndrome (PMWS) is an economically important porcine viral associated diseases caused by porcine circovirus 2(PCV2) in weaned piglets worldwide. Recently, the presence of PCV2 was reported in pig population of Kerala. But, PMWS and its association with other pathogens were not explored. Therefore, this study was designed with the objective of screening of 40 piglets for PMWS with concurrent screening for porcine reproductive and respiratory syndrome virus (PRRSV) and porcine parvo virus (PPV). Swine carcasses presented for post-mortem examination with a history of respiratory and reproductive problems collected from February, 2018 to February, 2019 from different parts of Kerala formed the samples for this study. The samples were initially screened with PCR followed by gross, histopathology and immunohistochemical characterisation. Gross lesions observed were mainly generalised icterus in the subcutaneous tissues, non-collapsed lungs, hydrothorax, enlarged bronchial lymph nodes, hepatomegaly with randomly distributed areas of white foci and yellowish colour kidneys. Histopathological lesions revealed bronchointerstitial pneumonia, lymphoid depletion in the germinal centre of the follicles with multifocal areas of granulomatous inflammation in the lymph nodes, lymphoid depletion in the peri-arteriolar lymphoid sheath of the spleen and interstitial nephritis of the kidney. Further, immunohistochemistry (IHC) demonstrated PCV2 antigensmainly in the spleen and lymph nodes. The present study reports three out of four positive PCV2 cases which fulfilled the diagnostic requirements of PMWS. However, PMWS cases were negative for both PRRSV and PPV. Therefore, the present study identified the immunosuppressive nature of PMWS among pig population of Kerala. [ABSTRACT FROM AUTHOR]

In recent years, the role of Listeria monocytogenes as a foodborne pathogen in public health has increased. Its presence poses a risk for humans, especially in ready-to-eat foods, such as ham. Understanding the presence and distribution of Listeria spp. on swine carcasses meant for Italian dry-cured hams can be a useful tool to improve food safety. This study assessed the distribution of Listeria spp. (as a marker of contamination with L. monocytogenes) on slaughtered pig carcasses intended for the production of high-quality, Italian, dry-cured ham and examined the roles of the site sampled on the carcass, farming cycle (open versus closed), farm-to-slaughterhouse distance, and time spent in lairage. Samples were collected from swine carcasses (n = 150) before refrigeration, from three different carcass locations (head, shoulder, and thigh), and assessed for the presence of listeriae. A total of 115 carcasses were contaminated with Listeria spp. in at least one location. In all, 178 listeriae were isolated and identified: 130 Listeria innocua, 28 Listeria welshimeri, 17 Listeria ivanovii, and 3 L. monocytogenes. Listeriae were detected on 62.7% of heads, on 25.3% of shoulders, and on 30.7% of thighs, with significant differences between heads versus shoulders and thighs. Animals reared in closed-cycle farms were more contaminated (P < 0.05) than were animals from open-cycle farms (90 versus 71.8%). The distance between farms and slaughterhouse was not related to the contamination rate. Carcasses of swine that stayed in lairage before slaughtering for more than 10 h showed a higher degree of contamination (90%) and were positive for Listeria spp. in more sample sites (55%) compared with those held for less than 2 h (73% of carcasses and 33.3% of samples). Our results show that heads should be detached from carcasses immediately after slaughter for meat-safety purposes and the amount of time animals stay in lairage should be limited. These results will be useful for a more-valid implementation of good manufacturing processes for slaughtering. Swine carcasses are often contaminated with Listeria spp. Heads are more contaminated than shoulders and thighs. Lairage time higher than 10 h is a risk factor for Listeria spp. contamination. Closed-cycle farms presented greater carcass contamination. [ABSTRACT FROM AUTHOR]

An experiment was conducted to compare the effects of increasing dietary net energy (NE) in finishing pig diets while either maintaining a standardized ileal digestible lysine:NE ratio (SID Lys:NE) or maintaining SID Lys as a constant percentage of the diet across increasing energy densities. A total of 150 pigs (Line 600 × 241; DNA, Columbus, NE; initially 35.7 kg) were used in a 91-d study. Pigs were blocked by sex and weight and randomly assigned to 1 of 5 treatments with 2 pigs per pen and 15 pens per treatment. Treatments included a low-energy control diet that was corn-soybean meal-based with added soybean hulls, and a 2 × 2 factorial arrangement of treatments with main effects of increasing dietary NE (medium or high by adding choice white grease) and formulation method (with a SID Lys:NE ratio or maintaining the same percentage SID Lys). Linear and quadratic contrasts were made using the control diet and the medium- and high-energy diets within each formulation method. Pigs and feeders were weighed approximately every 30 d to calculate average daily gain (ADG), average daily feed intake (ADFI), and gain-to-feed ratio (G:F). At the end of the experiment, pigs were sent to a commercial processing facility for carcass data collection. From days 0 to 34 and 34 to 61, ADG and SID Lys intake increased as NE increased (linear, P < 0.05) in pigs fed diets with a Lys:NE ratio, but not for those fed the same percentage Lys. As NE increased, NE intake and G:F increased (P < 0.01) in pigs fed diets with either formulation method. From days 61 to 91, increasing NE had no effect (P > 0.10) on ADG. There was no change in G:F in pigs fed diets with the same percentage Lys (P > 0.10), but G:F decreased then increased (quadratic, P < 0.01) in response to increasing NE in pigs fed diets with a SID Lys:NE ratio. Overall, increasing dietary NE increased (linear, P < 0.001) daily NE intake and G:F (linear, P < 0.018) with either formulation method. However, SID Lys intake, ADG, and hot carcass weight only increased (linear, P < 0.01) when a SID Lys:NE ratio was maintained. Increasing NE without maintaining a constant SID Lys:NE ratio increased backfat depth (quadratic, P = 0.01), whereas it did not in pigs fed diets with a SID Lys:NE ratio. In conclusion, increasing dietary energy density increased NE intake and G:F regardless of formulation method. However, a SID Lys:NE ratio must be maintained to achieve increased ADG and minimize fat deposition. [ABSTRACT FROM AUTHOR]

Two experiments were conducted to determine the effects of feeding chromium propionate (Cr; Kemin Industries, Inc. Des Moines, IA) and a Yucca schidigera -based extract (YS; Distributors Processing, Inc. Porterville, CA) on growth performance of finishing pigs housed in commercial conditions. In experiment 1, a total of 1,188 pigs (PIC 337 × 1050; initially 27.3 ± 0.48 kg body weight [BW]) with 27 pigs per pen and 11 pens per treatment were split by sex upon arrival at the facility and were randomly allotted to groups of four pens blocked by BW. Diets were corn–soybean meal-dried distillers grains with solubles-based and were fed in five phases. Treatments were arranged as a 2 × 2 factorial with main effects of Cr (0 vs. 200 µg/kg) or YS (0 vs. 62.5 mg/kg YS-based feed grade concentrate). Overall, adding Cr alone increased (P = 0.049) average daily feed intake (ADFI), and inclusion of YS resulted in a marginally significant increase (P = 0.077) in ADFI. Backfat depth was increased (P = 0.043) and lean percentage was decreased (P = 0.011) with added Cr. In experiment 2, a total of 2,430 pigs (PIC 359 × 1050; initially 29.3 ± 0.43 kg BW) were placed in balanced mixed-sex pens with 27 pigs per pen, blocked by average pen BW, and randomly assigned to one of six dietary treatments with 14 pens per treatment. Diets were corn–soybean meal-based and were formulated in five dietary phases. Treatments were arranged in a 2 × 3 factorial with main effects of Cr (0 vs. 200 µg/kg added Cr), and YS extract (0, 62.5, or 125 mg/kg YS-based feed grade concentrate). Overall, a marginally significant (linear, P = 0.072) Cr × YS interaction was observed for average daily gain (ADG) where there was insufficient evidence of a difference with increasing YS in diets not including added Cr (P ≥ 0.109); however, ADG increased (quadratic, P = 0.026) with YS addition in treatments fed 200 µg/kg added Cr. For overall ADFI, a marginally significant (linear, P = 0.071) Cr × YS interaction was observed where YS increased ADFI with 200 µg/kg added Cr (linear, P = 0.031), however, did not when diets contained no added Cr (P = 0.700). A marginally significant reduction in gain:feed ratio was observed when 62.5 mg/kg YS was included (quadratic, P = 0.053), and final BW and hot carcass weight were lowest with 62.5 mg/kg YS (quadratic, P = 0.012). In summary, adding Cr propionate along with YS led to modest changes in performance with the greatest benefit observed with 200 µg/kg Cr and 125 mg/kg YS-based feed grade concentrate. [ABSTRACT FROM AUTHOR]

A total of 1,089 pigs (PIC 280 × 1050; initially 37.3 ± 2.8 kg) were used to determine the effects of increasing Cu provided from either CuSO4 alone or a 50:50 blend of CuSO4 and a Copper–amino acid complex (Cu-AA) on growth performance and carcass characteristics of finishing pigs. Pens of pigs were blocked by body weight; within blocks, pens were randomly allotted to one of six dietary treatments. The six dietary treatments consisted of a control diet which contained 17 mg/kg Cu from CuSO4 from the trace mineral premix, or the control diet with either added CuSO4 to provide 70 and 130 mg/kg total Cu or a 50:50 blend of Cu from CuSO4 and Cu-AA (CuSO4/Cu-AA blend) to provide 70, 100, and 130 mg/kg total Cu. Experimental diets were corn–soybean meal-dried distillers grains with solubles-based and fed in meal form in five phases (approximately 37 to 46, 46 to 63, 63 to 77, 77 to 103, and 103 to 129 kg body weight). From d 0 to 43, neither Cu source nor level influenced growth performance. From d 43 to 105, average daily feed intake (ADFI) decreased (P = 0.037) for pigs fed the CuSO4/Cu-AA blend compared to those fed added Cu from CuSO4 alone. Gain:feed ratio (G:F) tended to be improved (linear, P = 0.056) as Cu concentration increased. Overall, d 0 to 105, neither Cu level nor source influenced average daily gain (ADG). Pigs fed 70 or 130 mg/kg total added Cu from the CuSO4/Cu-AA blend had lower (P = 0.045) ADFI but G:F tended to be improved (P = 0.051) compared with those fed the same amount of total Cu from only CuSO4. Owing to the decreased ADFI and improved G:F of pigs fed the CuSO4/Cu-AA blend, carcass G:F also improved (P = 0.033) compared with those fed added Cu from CuSO4 alone. In conclusion, providing a 50:50 blend of CuSO4 and Cu-AA improved G:F on both a live and carcass weight basis compared to CuSO4 alone with no differences in ADG or carcass ADG observed. [ABSTRACT FROM AUTHOR]

Research has shown that carcass yield in swine is reduced when ingredients with high neutral detergent fiber (NDF) content. Carcass yield reduction from feeding high-fiber ingredients results from an increase in the weight of intestinal contents. NDF has been shown to result in the digestive contents to swell in the large intestine by absorbing water thus increasing the fecal volume in the large intestine. Considering the financial implications of changing carcass yield, the objective of this project was to develop a regression equation to estimate carcass yield from dietary NDF and strategies where high-NDF ingredients are taken out of the diet in the last dietary phases before slaughter (withdrawal period; WP). Data from 8 experiments (43 observations) originated from 6 journal articles and 1 technical memo were used to develop the regression equation. The WP of high NDF ingredients was either none or ranged from 5 to 63 d in the experiments. Treatment diets of each trial were reformulated to obtain dietary nutrient content using the NRC ingredient library (NRC, Nutrient requirements of swine. 11th ed, 2012). Composition of experimental diets was used to calculate dietary net energy, crude protein, crude fiber, NDF, and acid detergent fiber in the last two dietary phases. These dietary compositions along with the number of days of WP were used to develop regression equations. The model was determined using a step-wise selection procedure starting with guided forward selection through individual predictor variables, with a statistical significance at P < 0.05 used to determine inclusion of terms in the final model. The regression analysis showed that WP, NDF level in the dietary phase prior to the final phase (NDF1), NDF level in the last dietary phase before marketing (NDF2), and the interaction between NDF2 and WP were the most important variables in the dataset to predict carcass yield. The resulting regression equation was as follows: carcass yield, % = 0.03492 ± 0.02633 × WP (d) – 0.05092 ± 0.02862 × NDF1 (%) – 0.06897 ± 0.02931 × NDF2 (%) – 0.00289 ± 0.00216 × (NDF2 [%] × WP [d]) + 76.0769 ± 1.33730. In conclusion, high levels of NDF up to slaughter had a negative impact on carcass yield. Increasing the length of the WP improved carcass yield; however, the effect of WP was dependent on the level of NDF2. The equation herein provides a tool to estimate of the impact of dietary NDF on carcass yield. [ABSTRACT FROM AUTHOR]

Adequate carcass chilling is required to optimize pork quality and food safety. The rate at which carcasses chill is dependent on their mass. Hot carcass weight has increased steadily over the years, certainly affecting the chilling rate of the average carcass in contemporary abattoirs. Therefore, the objective was to model the effect of HCW on temperature decline of a contemporary population of pork carcasses slaughtered at a commercial abattoir that used a blast-chilling method. In addition, carcasses were sorted into HCW classes, and the effect of HCW group was tested on the rate of temperature decline of the longissimus dorsi and semimembranosus. Hot carcass weight, internal temperature of the loin muscle (at the 10th rib) and ham, as well as ambient temperature, were recorded from 40 to 1,320 min postmortem (45 time points) on 754 pork carcasses. An exponential decay model based on Newton's law of cooling,   T (t) = T a + (T 0 − T a) e − k t ⁠, was fit to temperature decline of the ham and loin of the whole population using PROC MODEL of SAS. The initial models for the decline of both ham and loin temperature displayed significant autocorrelation of errors based on evaluation of the autocorrelation function plots and Durbin–Watson test (P < 0.0001). Therefore, second- and third-order autocorrelation parameters were tested. Based on Durbin–Watson test, the use of second-order autocorrelation model with lags of 1 and 2 was deemed adequate and was therefore included in all subsequent models. This base model and its respective parameter estimates were all significant (P < 0.01) for the whole population. Carcasses approximating 85, 90, 95, 100, and 105 kg (± 1 kg) were selected and binned into their respective weight classes. Dummy variables were used to compare the effect of HCW class on parameter estimate of ham and loin models. The developed model significantly fit all weight classes (P < 0.01) for both ham and loin temperature decline. For both loin and ham models, estimates of the rate constant (k) generally decreased as HCW increased. For loin temperature, k estimate for 105-kg carcasses was 0.00124 less (P = 0.02) than 85-kg carcasses, with the intermediate HCW classes not differing from the 85-kg class. For ham temperature, estimates of k for 90, 95, 100, and 105 kg HCW were all significantly and successively less than the k estimate for 85 kg class. For perspective, loins of 95-kg carcasses were estimated to reach 2 °C in 17 h, whereas loins from 105-kg carcasses would not reach 2 °C until 27 h. For hams, 95-kg carcasses were projected to reach 2 °C in 21 h, whereas those from 105-kg carcasses would take 28 h. Overall, HCW significantly affects the rate of temperature decline of pork hams, but not loins from pork carcasses weighing between 85 and 100 kg. [ABSTRACT FROM AUTHOR]

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Pork plays a central role in culinary tradition in Central Europe. Most of the studies determine the fatty acid (FA) content separately in muscles and subcutaneous fat. However, it is also important to determine the FA content of meat products, which contain a mixture of muscles and fat. The determination of FA in carcass tissues is difficult and leads to the destruction of the whole carcass. Thus, the aim of this study was to estimate the FA content of carcass meat (muscles with inter- and intramuscular fat, MC), and carcass soft tissues (muscles with inter- and intramuscular fat and subcutaneous fat, SC) based on a single muscle. Fatty acids were analysed using gas chromatography. Thirty crossbred pigs were fed diets differing in their fatty acid content and n-6 : n-3 polyunsaturated fatty acid (PUFA) ratio. Samples of Longissimus thoracis et lumborum (LL), Biceps femoris (BF), Semitendinosus (ST), and Semimembranosus (SM) muscles, MC, and SC were taken. Correlation between linolenic, eicosapentaenoic and docosahexaenoic acids contents and n-6 : n-3 PUFA in examined muscles and MC ranged from 0.809 (SM) to 0.961 (LL), from 0.708 (LL) to 0.954 (ST), from 0.907 (SM) to 0.941 (ST), respectively (P = 0.000). Correlation between linolenic, eicosapentaenoic and docosahexaenoic acids contents and n-6 : n-3 PUFA in examined muscles and SC ranged from 0.773 (SM) to 0.954 (LL), 0.763 (LL) to 0.983 (BF), and from 0.909 (LL) to 0.940 (ST), respectively (P = 0.000). Results allow estimate the FA content of MC and SC based on their content in single muscles. Fatty acids determine the health-promoting properties of meat products, which contain a mixture of muscles and fat. In this paper, we showed that it is possible to estimate the health-promoting properties of such meat products based on fatty acid content in single muscle. These results added beneficial information to improve meat quality and allowed to determine the amount of the meat product that should be consumed by human to meet fatty acid requirements. [ABSTRACT FROM AUTHOR]

Abstract Tonsils in the oral cavity are an important source of contamination during pig slaughter, but have not received as much attention as faecal contamination. In the present study, ten pigs were sampled from tonsils, faeces and three different areas on each carcass. The samples were analysed by both culturing of Escherichia coli and Yersinia enterocolitica and by 16S rRNA gene sequencing to characterize the bacterial communities. Comparing culture data from deep tonsil tissue and tonsil surface showed similar numbers of E. coli but significantly higher numbers of Y. enterocolitica in the deep tissue samples. Microbiota analysis showed similar bacterial communities in the two sample types at phylum level, while comparison at genus level showed significant differences between the relative abundance of several genera in the two sample types. The finding of a significantly higher relative abundance of Yersinia in tonsil tissue compared to tonsil surface supported the culture analysis. The microbiota analysis also investigated characteristics of the bacterial community that could discriminate bacterial transfer from tonsils and faeces to the carcass during slaughter. The microbiota analyses demonstrated that Fusobacteria and Proteobacteria are the most abundant phyla in tonsils, while Firmicutes showed the highest relative abundance in faeces. The dominating phylum on carcasses was Proteobacteria. Besides Proteobacteria, the swabbing area on the forepart of the carcass, showed a higher relative abundance of Firmicutes and Fusobacteria compared to swabbing areas on the rear part and mid-section of the carcass. Principal coordinate analysis showed clear clustering of samples based on sample source (tonsils, faeces and carcass). Carcass swab samples from the forepart tended to cluster closer to the tonsil samples compared to carcass swab samples from the rear part and mid-section. Identification of the genera Fusobacterium , Moraxella , Actinobacillus and non- E. coli genera of the family Enterobacteriaceae in carcass swabs could indicate tonsil contamination, while faecal contamination would more likely include higher prevalence of bacteria belonging to the class of Clostridia. The present study supports that it is possible to identify bacterial groups that are indicative for either tonsil or faecal carcass contamination. The level and composition of Enterobacteriaceae on the carcasses did, however, indicate that other sources of meat contamination than tonsils and faeces may be important, such as the process environment. Highlights • Major phyla in pig tonsils were Proteobacteria and Fusobacteria. • Clear differences in microbiota at genus level between tonsil surface and deep tonsil tissue • The genera Moraxella , Fusobacterium , and Actinobacillus are potential markers of carcass contamination from tonsils. [ABSTRACT FROM AUTHOR]