12 results on '"SCHON, Isa"'
Search Results
2. First annotated draft genomes of nonmarine ostracods (Ostracoda, Crustacea) with different reproductive modes
- Author
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Van, PT, Anselmetti, Y, Bast, J, Dumas, Z, Galtier, N, Jaron, KS, Martens , K, Parker, DJ, Robinson-Rechavi, M, Schwander, T, Simion, P, SCHON, Isa, and Andrews, B J
- Subjects
ancient asexual ,Darwinula stevensoni ,Cyprideis torosa ,sexual - Abstract
Ostracods are one of the oldest crustacean groups with an excellent fossil record and high importance for phylogenetic analyses but genome resources for this class are still lacking. We have successfully assembled and annotated the first reference genomes for three species of nonmarine ostracods; two with obligate sexual reproduction (Cyprideis torosa and Notodromas monacha) and the putative ancient asexual Darwinula stevensoni. This kind of genomic research has so far been impeded by the small size of most ostracods and the absence of genetic resources such as linkage maps or BAC libraries that were available for other crustaceans. For genome assembly, we used an Illumina-based sequencing technology, resulting in assemblies of similar sizes for the three species (335-382 Mb) and with scaffold numbers and their N50 (19-56 kb) in the same orders of magnitude. Gene annotations were guided by transcriptome data from each species. The three assemblies are relatively complete with BUSCO scores of 92-96. The number of predicted genes (13,771-17,776) is in the same range as Branchiopoda genomes but lower than in most malacostracan genomes. These three reference genomes from nonmarine ostracods provide the urgently needed basis to further develop ostracods as models for evolutionary and ecological research. This research was funded by Belgian Federal Science Policy (BR/ 314/PI/LATTECO) and a grant from the Swiss National Science Foundation (CRSII3_160723). Marie Cours, Tijs Van Den Bergen, and Jeroen Venderickx are acknowledged for technical support in sampling and sorting ostracod samples. We also thank Kristiaan Hoedemakers and Jeroen Venderickx for their assistance in finalizing the figure
- Published
- 2021
3. First annotated draft genomes of nonmarine ostracods (Ostracoda, Crustacea) with different reproductive modes
- Author
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Van, Patrick Tran, Anselmetti, Yoann, Bast, Jens, Dumas, Zoe, Galtier, Nicolas, Jaron, Kamil S., Martens, Koen, Parker, Darren J., Robinson-Rechavi, Marc, Schwander, Tanja, Simion, Paul, Schon, Isa, Van, Patrick Tran, Anselmetti, Yoann, Bast, Jens, Dumas, Zoe, Galtier, Nicolas, Jaron, Kamil S., Martens, Koen, Parker, Darren J., Robinson-Rechavi, Marc, Schwander, Tanja, Simion, Paul, and Schon, Isa
- Abstract
Ostracods are one of the oldest crustacean groups with an excellent fossil record and high importance for phylogenetic analyses but genome resources for this class are still lacking. We have successfully assembled and annotated the first reference genomes for three species of nonmarine ostracods; two with obligate sexual reproduction (Cyprideis torosa and Notodromas monacha) and the putative ancient asexual Darwinula stevensoni. This kind of genomic research has so far been impeded by the small size of most ostracods and the absence of genetic resources such as linkage maps or BAC libraries that were available for other crustaceans. For genome assembly, we used an Illumina-based sequencing technology, resulting in assemblies of similar sizes for the three species (335-382 Mb) and with scaffold numbers and their N50 (19-56 kb) in the same orders of magnitude. Gene annotations were guided by transcriptome data from each species. The three assemblies are relatively complete with BUSCO scores of 92-96. The number of predicted genes (13,771-17,776) is in the same range as Branchiopoda genomes but lower than in most malacostracan genomes. These three reference genomes from nonmarine ostracods provide the urgently needed basis to further develop ostracods as models for evolutionary and ecological research.
- Published
- 2021
4. Asexual reproduction in nonmarine ostracods
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Butlin, Roger, Schon, Isa, and Martens, Koen
- Subjects
Ostracoda -- Research ,Reproduction, Asexual -- Research ,Hybridization -- Research ,Parthenogenesis -- Research ,Biological sciences - Abstract
Nonmarine ostracods repeatedly demonstrate the evolution of asexual reproduction. Clonal diversity may be maintained through ecological differentiation and hybridization between asexual males and females of the same or related species. Molecular data of ancient species suggest some clonal lineages may exceed 5 mil years. Darwinula stevensoni has apparently been without gender for over 100 mil years.
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- 1998
5. Understanding the influence of man-made structures on the ecosystem functions of the North Sea (UNDINE)
- Author
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Dannheim, Jennifer, Beerman, Jan, Lacroix, Geneviève, De Mesel, Ilse, Kerckhof, Francis, Schon, Isa, Degraer, Steven, Birchenough, Silvana N.R., Garcia, Clement, Coolen, J.W.P., Lindeboom, H.J., and Luttikhuizen, Pieternella C.
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Aquatic Ecology and Water Quality Management ,Onderzoeksformatie ,Life Science ,Directie ,Aquatische Ecologie en Waterkwaliteitsbeheer - Published
- 2018
6. From Naples 1963 to Rome 2013-A brief review of how the International Research Group on Ostracoda (IRGO) developed as a social communication system
- Author
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Danielopol, Dan L., Baltanas, Angel, Carbonel, Pierre, Colin, Jean-Paul, Crasquin, Sylvie, Decrouy, Laurent, De Deckker, Patrick, Gliozzi, Elsa, Groos-Uffenorde, Helga, Horne, David J., Iepure, Sanda, Keyser, Dietmar, Kornicker, Louis S., Lord, Alan, Martens, Koen, Matzke-Karasz, Renate, Miller, C. Giles, Oertli, Henri J., Pugliese, Nevio, Russo, Antonio, Sames, Benjamin, Schon, Isa, Siveter, David J., Smith, Alison, Viehberg, Finn A., Wouters, Karel, Yassini, Iradj, Danielopol, Dan L., Baltanas, Angel, Carbonel, Pierre, Colin, Jean-Paul, Crasquin, Sylvie, Decrouy, Laurent, De Deckker, Patrick, Gliozzi, Elsa, Groos-Uffenorde, Helga, Horne, David J., Iepure, Sanda, Keyser, Dietmar, Kornicker, Louis S., Lord, Alan, Martens, Koen, Matzke-Karasz, Renate, Miller, C. Giles, Oertli, Henri J., Pugliese, Nevio, Russo, Antonio, Sames, Benjamin, Schon, Isa, Siveter, David J., Smith, Alison, Viehberg, Finn A., Wouters, Karel, and Yassini, Iradj
- Abstract
The 1st International Symposium on Ostracoda (ISO) was held in Naples (1963). The philosophy behind this symposium and the logical outcome of what is now known as the International Research Group on Ostracoda (IRGO) are here reviewed, namely ostracodology over the last 50 years is sociologically analysed. Three different and important historic moments for the scientific achievements of this domain are recognised. The first one, between about 1963 and 1983, is related to applied research for the oil industry as well as to the great interest in the better description of the marine environment by both zoologists and palaeontologists. Another important aspect during this period was the work by researchers dealing with Palaeozoic ostracods, who had their own discussion group, IRGPO. Gradually, the merger of this latter group with those dealing with post-Palaeozoic ostracods at various meetings improved the communication between the two groups of specialists. A second period was approximately delineated between 1983 and 2003. During this time-slice, more emphasis was addressed to environmental research with topics such as the study of global events and long-term climate change. Ostracodologists profited also from the research politics within national and international programmes. Large international research teams emerged using new research methods. During the third period (2003-2013), communication and collaborative research reached a global dimension. Amongst the topics of research we rite the reconstruction of palaeoclimate using transfer functions, the building of large datasets of ostracod distributions for regional and intercontinental studies, and the implementation of actions that should lead to taxonomic harmonisation. Projects within which molecular biological techniques are routinely used, combined with sophisticated morphological information, expanded now in their importance. The documentation of the ostracod description improved through new techniques to visu
- Published
- 2015
7. Nine new species of Bennelongia De Deckker & McKenzie, 1981 (Crustacea, Ostracoda) from Western Australia, with the description of a new subfamily
- Author
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Martens, Koen, primary, Halse, Stuart, additional, and Schon, Isa, additional
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- 2012
- Full Text
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8. Ancient asexuals: darwinulids not exposed
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Martens, Koen, primary and Schon, Isa, additional
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- 2008
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9. CRUSTACEAN BIODIVERSITY IN ANCIENT LAKES: A REVIEW
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Martens, Koen, primary and Schon, Isa, additional
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- 1999
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10. Valve shape is not linked to genetic species in the Eucypris vireos (Ostracoda, Crustacea) species complex
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Koenders, Annette, Schon, Isa, Halse, Stuart, Martens, Koen, Koenders, Annette, Schon, Isa, Halse, Stuart, and Martens, Koen
- Abstract
Koenders, A., Schön, I., Halse, S., & Martens, K. (2017). Valve shape is not linked to genetic species in the Eucypris virens (Ostracoda, Crustacea) species complex. Zoological Journal of the Linnean Society, 180(1), 36-46. Available here
11. Urbanization drives cross‐taxon declines in abundance and diversity at multiple spatial scales
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Kristien I. Brans, Hans Matheve, Rose Sablon, Nicolas Debortoli, Koen Martens, Frederik Hendrickx, Lisa F. Baardsen, Andros T. Gianuca, Robby Stoks, Jessie M. T. Engelen, Katrien De Wolf, Dries Bonte, Erik Matthysen, Luc Lens, Caroline Souffreau, Fabio T. T. Hanashiro, Isa Schön, Jeroen Van Wichelen, Pieter Vanormelingen, Thierry Backeljau, Elena Piano, Ellen Decaestecker, Eveline Pinseel, Hans Van Dyck, Lynn Govaert, Luc De Meester, Janet Higuti, Diego Fontaneto, Maxime Dahirel, Thomas Merckx, Wim Vyverman, Marie Cours, Karine Van Doninck, Royal Belgian Institute of Natural Sciences (RBINS), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Universiteit Gent = Ghent University [Belgium] (UGENT), P07/4, Belgian Federal Science Policy Office, 45968/2012‐1, Conselho Nacional de Desenvolvimento Científico e Tecnológico, Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Universiteit Gent = Ghent University (UGENT), Dahirel, Maxime/0000-0001-8077-7765, Taquicava Hanashiro, Fabio, Toshiro/0000-0002-0965-0304, Piano, Elena, Souffreau, Caroline, Merckx, Thomas, Baardsen, Lisa F., Backeljau, Thierry, Bonte, Dries, Brans, Kristien, I, Cours, Marie, Dahirel, Maxime, Debortoli, Nicolas, Decaestecker, Ellen, De Wolf, Katrien, Engelen, Jessie M. T., Fontaneto, Diego, Gianuca, Andros T., Govaert, Lynn, Hanashiro, Fabio T. T., Higuti, Janet, Lens, Luc, Martens, Koen, Matheve, Hans, Matthysen, Erik, Pinseel, Eveline, Sablon, Rose, SCHON, Isa, Stoks, Robby, Van Doninck, Karine, Van Dyck, Hans, Vanormelingen, Pieter, Van Wichelen, Jeroen, Vyverman, Wim, De Meester, Luc, Hendrickx, Frederik, and Biology
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0106 biological sciences ,010504 meteorology & atmospheric sciences ,Ecologie [animale] ,Biodiversity ,Beta diversity ,Evolution des espèces ,010603 evolutionary biology ,01 natural sciences ,Environmental Science(all) ,Abundance (ecology) ,Animals ,Environmental Chemistry ,insect decline ,Biology ,Relative species abundance ,Ecosystem ,ComputingMilieux_MISCELLANEOUS ,0105 earth and related environmental sciences ,General Environmental Science ,biodiversity ,Global and Planetary Change ,spatial scale ,Ecology ,Urbanization ,Species diversity ,land use ,15. Life on land ,biotic homogenization ,Coleoptera ,Chemistry ,diversity partitioning ,urban ecology ,Geography ,Urban ecology ,Spatial ecology ,Species richness ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Biologie ,Butterflies ,Sciences exactes et naturelles - Abstract
The increasing urbanization process is hypothesized to drastically alter (semi-)natural environments with a concomitant major decline in species abundance and diversity. Yet, studies on this effect of urbanization, and the spatial scale at which it acts, are at present inconclusive due to the large heterogeneity in taxonomic groups and spatial scales at which this relationship has been investigated among studies. Comprehensive studies analysing this relationship across multiple animal groups and at multiple spatial scales are rare, hampering the assessment of how biodiversity generally responds to urbanization. We studied aquatic (cladocerans), limno-terrestrial (bdelloid rotifers) and terrestrial (butterflies, ground beetles, ground- and web spiders, macro-moths, orthopterans and snails) invertebrate groups using a hierarchical spatial design, wherein three local-scale (200 m x 200 m) urbanization levels were repeatedly sampled across three landscape-scale (3 km x 3 km) urbanization levels. We tested for local and landscape urbanization effects on abundance and species richness of each group, whereby total richness was partitioned into the average richness of local communities and the richness due to variation among local communities. Abundances of the terrestrial active dispersers declined in response to local urbanization, with reductions up to 85% for butterflies, while passive dispersers did not show any clear trend. Species richness also declined with increasing levels of urbanization, but responses were highly heterogeneous among the different groups with respect to the richness component and the spatial scale at which urbanization impacts richness. Depending on the group, species richness declined due to biotic homogenization and/or local species loss. This resulted in an overall decrease in total richness across groups in urban areas. These results provide strong support to the general negative impact of urbanization on abundance and species richness within habitat patches and highlight the importance of considering multiple spatial scales and taxa to assess the impacts of urbanization on biodiversity. Belgian Science Policy Office, Grant/Award Number: P07/4; Conselho Nacional de Desenvolvimento Cientifico e Tecnologico, Grant/Award Number: 45968/2012-1 Piano, E (reprint author), Univ Turin, Dept Life Sci & Syst Biol, Turin, Italy. elena.piano@unito.it
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- 2020
- Full Text
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12. Biogeography and community structure of abyssal scavenging Amphipoda (Crustacea) in the Pacific Ocean
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Ilse De Mesel, Koen Martens, Tasnim Patel, Isa Schön, Henri Robert, Steven Degraer, Cédric d'Udekem d'Acoz, Patel, Tasnim, Robert, Henri, D'Acoz, Cedric D'Udekem, Martens, Koen, De Mesel, Ilse, Degraer, Steven, and SCHON, Isa
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0106 biological sciences ,Amphipoda ,010504 meteorology & atmospheric sciences ,Biogeography ,lcsh:Life ,Biodiversity ,Structural basin ,010603 evolutionary biology ,01 natural sciences ,Genus Eurythenes ,Abyssal zone ,Diversity index ,lcsh:QH540-549.5 ,14. Life underwater ,Patterns ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,Earth-Surface Processes ,Behavior ,biology ,010604 marine biology & hydrobiology ,lcsh:QE1-996.5 ,Community structure ,Deep ,Northeast ,Fracture zone ,biology.organism_classification ,lcsh:Geology ,lcsh:QH501-531 ,Oceanography ,Geography ,lcsh:Ecology ,Geographic Range ,Species-Diversity - Abstract
In 2015, we collected more than 60 000 scavenging amphipod specimens during two expeditions to the Clarion-Clipperton fracture zone (CCZ) in the Northeast (NE) Pacific and to the DISturbance and re-COLonisation (DisCOL) experimental area (DEA), a simulated mining impact disturbance proxy in the Peru Basin in the Southeast (SE) Pacific. Here, we compare biodiversity patterns of the larger specimens (> 15 mm) within and between these two oceanic basins. Eight scavenging amphipod species are shared between these two areas, thus indicating connectivity. Overall diversity was lower in the DEA (Simpson index, D = 0.62), when compared to the CCZ (D = 0.73), and particularly low at the disturbance site in the DEA and the site geographically closest to it. Local differences within each basin were observed too. The community compositions of the two basins differ, as evidenced by a non-metric dimensional scaling (NMDS) analysis of beta biodiversity. Finally, a single species, Abyssorchomene gerulicorbis (Schulenberger and Barnard, 1976), dominates the DEA with 60% of all individuals. This research has been supported by the JPI-Oceans project "Mining Impact" (BELSPO grant no. BR/15/MA/JPI-DEEPSEA2). Patel, T (corresponding author), Univ Ghent, Dept Biol, KL Ledeganckstr 35, B-9000 Ghent, Belgium. tpatel@naturalsciences.be
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- 2020
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