24 results on '"S. Segan"'
Search Results
2. Establishing an Alveolar in Vitro Model to Test Potential Pathogenic Aerosols
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Sandra Stoppelkamp, S. Segan, F. Sollazzo, M. Weber, Christian Schlensak, Tobias Walker, Volker Steger, Mario Lescan, and Hans Peter Wendel
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Pulmonary and Respiratory Medicine ,business.industry ,Medicine ,Surgery ,Cardiology and Cardiovascular Medicine ,business ,Microbiology ,In vitro model ,Test (assessment) - Published
- 2018
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3. Incidence of normal white cell count and C-reactive protein in adults with acute appendicitis
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Paul Sitzler, Henry H. I. Yao, Nalin H. Dayawansa, Julian D. S. Segan, and Hon Ian Chong
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medicine.medical_specialty ,Abdominal pain ,biology ,business.industry ,Incidence (epidemiology) ,C-reactive protein ,General Medicine ,Emergency department ,030230 surgery ,medicine.disease ,Appendicitis ,Surgery ,Normal white cell count ,03 medical and health sciences ,0302 clinical medicine ,Alvarado score ,Internal medicine ,Acute appendicitis ,medicine ,biology.protein ,030212 general & internal medicine ,medicine.symptom ,business - Abstract
Background Normal C-reactive protein (CRP) and white cell count (WCC) are often used to exclude a diagnosis of acute appendicitis in the Emergency Department (ED). Retrospective review of 281 adult patients with acute appendicitis was performed to study the incidence of normal CRP and WCC on admission and examine any possible predisposing factors. Method Retrospective analysis of patient clinical records yielded CRP, WCC, operative diagnosis, time of symptom onset, imaging results and history and examination features. Case-control analysis was performed with patients with normal CRP and WCC considered the case group and those with raised CRP or WCC considered controls. Groups were compared using Mann-Whitney U-test and chi-squared analysis. Results Of 281 consecutive patients with histologically proven appendicitis, 24 (8.54%) had normal CRP and WCC on presentation to ED. There were no significant differences in age, sex or time to blood collection between groups. Three patients had normal WCC and CRP and an Alvarado score of 4 or less on presentation. Three patients had persistently normal CRP and WCC on repeated testing. There was a trend towards earlier presentation in patients with normal CRP and WCC with 75.0% versus 58.4% presenting within 24 h of symptom onset (OR 2.14, P = 0.112). Conclusion Acute appendicitis remains diagnostically challenging and cannot be excluded on the basis of normal CRP and WCC. Serial clinical and biochemical assessment is warranted in patients with acute abdominal pain, particularly in those presenting early after symptom onset.
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- 2016
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4. Meteoroid environment on the transfer trajectories to Mars
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Boško Rašuo, Kristina Racković Babić, S. Segan, and Dusan Marceta
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010504 meteorology & atmospheric sciences ,Meteoroid ,Spacecraft ,Mathematical model ,business.industry ,Relative velocity ,Aerospace Engineering ,Flux ,Mars Exploration Program ,Kinematics ,01 natural sciences ,Astrobiology ,Physics::Space Physics ,0103 physical sciences ,Astrophysics::Earth and Planetary Astrophysics ,Aerospace engineering ,business ,Interplanetary spaceflight ,010303 astronomy & astrophysics ,Geology ,0105 earth and related environmental sciences - Abstract
The possibility of meteoroid impact is one of the main threats to the interplanetary missions. Although the meteoroids in the interplanetary space have very small masses, their velocities are extremely large and can produce highly energetic impacts. In this paper, a specific method to analyze the meteoroid environment on the transfer trajectories to Mars has been developed, by determination of the closest approach situation for a large sample of meteoroid orbits. This allows to analyze, not only the integral flux of meteoroids on the spacecraft surfaces, but also the specific kinematics for every single approach and the distributions of important variables such as relative velocity and its projections on specific directions such as instantaneous directions to Mars, Earth, Sun and apex. The obtained results give the quantitative and qualitative estimate of these variables which are separated for different populations of interplanetary meteoroids. The most exposed parts of the spacecraft on the Hohmann transfer to Mars are directed toward Mars, apex and anti-Earth point while the Sun and anti-Sun directions are symmetrically threatened. This gives the frame for the mission design and impact risk assessment and for the development of mathematical models of the behavior of the new spacecraft protection materials under impact loading and also for their experimental examination.
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- 2016
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5. Influence of seasonal cycles in Martian atmosphere on entry, descent and landing sequence
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Dusan Marceta, S. Segan, and Boško Rašuo
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Martian ,Orbital plane ,010504 meteorology & atmospheric sciences ,Equator ,Aerospace Engineering ,Mars Exploration Program ,Atmosphere of Mars ,Atmospheric sciences ,01 natural sciences ,Latitude ,13. Climate action ,0103 physical sciences ,Solstice ,Longitude ,010303 astronomy & astrophysics ,Geology ,0105 earth and related environmental sciences - Abstract
The phenomena like high eccentricity of Martian orbit, obliquity of the orbital plane and close alignment of the winter solstice and the orbital perihelion, separately or together can significantly alter not only the level of some Martian atmospheric parameters but also the characteristics of its diurnal and seasonal cycle. Considering that entry, descent and landing (EDL) sequence is mainly driven by the density profile of the atmosphere and aerodynamic characteristic of the entry vehicle. We have performed the analysis of the influence of the seasonal cycles of the atmospheric parameters on EDL profiles by using Mars Global Reference Atmospheric Model (Mars-GRAM). Since the height of the deployment of the parachute and the time passed from the deployment to propulsion firing (descent time) are of crucial importance for safe landing and the achievable landing site elevation we paid special attention to the influence of the areocentric longitude of the Sun (Ls) on these variables. We have found that these variables have periodic variability with respect to Ls and can be very well approximated with a sine wave function whose mean value depends only on the landing site elevation while the amplitudes and phases depend only on the landing site latitude. The amplitudes exhibit behavior which is symmetric with respect to the latitude but the symmetry is shifted from the equator to the northern mid-tropics. We have also noticed that the strong temperature inversions which are usual for middle and higher northern latitudes while Mars is around its orbital perihelion significantly alter the descent time without influencing the height of the parachute deployment. At last, we applied our model to determine the dependence of the accessible landing region on Ls and found that this region reaches maximum when Mars is around the orbital perihelion and can vary 50° in latitude throughout the Martian year.
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- 2014
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6. Incidence of normal white cell count and C-reactive protein in adults with acute appendicitis
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Nalin H, Dayawansa, Julian D S, Segan, Henry H I, Yao, Hon I, Chong, and Paul J, Sitzler
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Adult ,Male ,Chi-Square Distribution ,Australia ,Middle Aged ,Appendicitis ,Prognosis ,Severity of Illness Index ,Statistics, Nonparametric ,Tertiary Care Centers ,Leukocyte Count ,Young Adult ,C-Reactive Protein ,Treatment Outcome ,Reference Values ,Risk Factors ,Case-Control Studies ,Acute Disease ,Confidence Intervals ,Appendectomy ,Humans ,Female ,Emergency Service, Hospital ,Retrospective Studies - Abstract
Normal C-reactive protein (CRP) and white cell count (WCC) are often used to exclude a diagnosis of acute appendicitis in the Emergency Department (ED). Retrospective review of 281 adult patients with acute appendicitis was performed to study the incidence of normal CRP and WCC on admission and examine any possible predisposing factors.Retrospective analysis of patient clinical records yielded CRP, WCC, operative diagnosis, time of symptom onset, imaging results and history and examination features. Case-control analysis was performed with patients with normal CRP and WCC considered the case group and those with raised CRP or WCC considered controls. Groups were compared using Mann-Whitney U-test and chi-squared analysis.Of 281 consecutive patients with histologically proven appendicitis, 24 (8.54%) had normal CRP and WCC on presentation to ED. There were no significant differences in age, sex or time to blood collection between groups. Three patients had normal WCC and CRP and an Alvarado score of 4 or less on presentation. Three patients had persistently normal CRP and WCC on repeated testing. There was a trend towards earlier presentation in patients with normal CRP and WCC with 75.0% versus 58.4% presenting within 24 h of symptom onset (OR 2.14, P = 0.112).Acute appendicitis remains diagnostically challenging and cannot be excluded on the basis of normal CRP and WCC. Serial clinical and biochemical assessment is warranted in patients with acute abdominal pain, particularly in those presenting early after symptom onset.
- Published
- 2016
7. The distributions of positions of Minimal Orbit Intersection Distances among Near Earth Asteroids
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S. Segan and Dusan Marceta
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Physics ,Orbital elements ,Atmospheric Science ,Near-Earth object ,Aerospace Engineering ,Astronomy ,Astronomy and Astrophysics ,Astrobiology ,Geophysics ,Intersection ,Space and Planetary Science ,Asteroid ,General Earth and Planetary Sciences ,Orbit (control theory) - Abstract
This paper presents the distributions of the positions of the Minimal Orbit Intersection Distances (MOID) among three subgroups of the Near Earth Asteroids (NEAs). This includes 683 Atens, 4185 Apollos and 3538 Amors which makes over 15 millions combinations of the pairs of orbits. The results which are obtained in this analysis show very interesting distributions of positions of the MOIDs and circumstances of close approaches of the asteroids and emphasize influence of different orbital elements on these distributions.
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- 2012
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8. Possibilities of Improving the TD88 Atmospheric Total Density Model
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Dusan Marceta and S. Segan
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Physics ,010504 meteorology & atmospheric sciences ,Density model ,lcsh:Astronomy ,Astronomy and Astrophysics ,Earth ,Function (mathematics) ,01 natural sciences ,lcsh:QB1-991 ,Theoretical physics ,0103 physical sciences ,Statistical physics ,Thermosphere ,010303 astronomy & astrophysics ,0105 earth and related environmental sciences - Abstract
In this paper we have examined possibilities for preserving and improving the total density model of the Earth?s neutral thermosphere TD88 (Sehnal and Posp?silov? 1988) via modelling differences between TD88 and NRLMSISE-00 (Picone et al. 2002), which is used as a control model. It is shown that these residuals can be approximated with polyharmonic function. Starting from this we have developed the mathematical model of the residuals to identify their origin and possibilities to improve the TD88 model itself.
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- 2010
9. The $\Sigma-{\sf \textit D}$ relation for planetary nebulae
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Dejan Urošević, S. Segan, Branislav Vukotić, Dragana Ilic, Miroslav Filipovic, Bojan Arbutina, S. Vidojevic, and Ivan S. Bojičić
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Physics ,010308 nuclear & particles physics ,Astrophysics::High Energy Astrophysical Phenomena ,Star (game theory) ,Bremsstrahlung ,Order (ring theory) ,Sigma ,Astronomy and Astrophysics ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Astrophysics ,01 natural sciences ,Planetary nebula ,Space and Planetary Science ,0103 physical sciences ,Surface brightness ,Supernova remnant ,010303 astronomy & astrophysics ,Astrophysics::Galaxy Astrophysics ,Malmquist bias - Abstract
We present an extended analysis of the relation between radio surface brightness and diameter -- the so-called $\Sigma-D$ relation for planetary nebulae (PNe). We revise our previous derivation of the theoretical $\Sigma-D$ relation for the evolution of bremsstrahlung surface brightness in order to include the influence of the fast wind from the central star. Different theoretical forms are derived: $\Sigma \propto D^{-1}$ for the first and second phases of evolution and $\Sigma\propto D^{-3}$ for the final stage of evolution. Also, we analyzed several different Galactic PN samples. All samples are influenced by severe selection effects, but Malmquist bias seems to be less influential here than in the supernova remnant (SNR) samples. We derived empirical $\Sigma-D$ relations for 27 sample sets using 6 updated PN papers from which an additional 21 new sets were extracted. Twenty four of these have a trivial form of $\beta \approx 2$. However, we obtain one empirical $\Sigma-D$ relation that may be useful for determining distances to PNe. This relation is obtained by extracting a recent nearby (< 1 kpc) Galactic PN sample.
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- 2009
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10. TD-88Up: Upgraded neutral Earth's thermosphere total density TD-88 model
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S. Segan and B. Surlan
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Atmospheric air ,Physics ,010504 meteorology & atmospheric sciences ,lcsh:Astronomy ,Earth ,Astronomy and Astrophysics ,Model parameters ,Atmospheric sciences ,01 natural sciences ,7. Clean energy ,Geomagnetic index ,lcsh:QB1-991 ,13. Climate action ,Control data ,Physics::Space Physics ,0103 physical sciences ,Range (statistics) ,Thermosphere ,010303 astronomy & astrophysics ,Earth (classical element) ,0105 earth and related environmental sciences - Abstract
Improved constants of the total density TD-88 model for the Earth's neutral thermosphere are calculated. The model is fully functional within the height range of 200 to 500 km, with fixed values of the mean solar flux and geomagnetic index. The control data of the atmospheric air density are derived from the aeronomical NRLMSISE-00 model which was used as the reference one. The upgraded TD-88, named TD-88Up, model is obtained by the extended LSQ method with varying all model parameters.
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- 2009
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11. PR and PL (PMv) relations for classical Cepheids revisited
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S. Segan and P. Glisovic
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Length scale ,Brightness ,010504 meteorology & atmospheric sciences ,Cepheid variable ,lcsh:Astronomy ,Astrophysics::High Energy Astrophysical Phenomena ,Astrophysics ,Astrophysics::Cosmology and Extragalactic Astrophysics ,RR Lyrae variable ,Cepheids ,01 natural sciences ,Luminosity ,lcsh:QB1-991 ,0103 physical sciences ,Astrophysics::Solar and Stellar Astrophysics ,Stars: distances ,010303 astronomy & astrophysics ,Astrophysics::Galaxy Astrophysics ,0105 earth and related environmental sciences ,Physics ,COSMIC cancer database ,Cosmic distance ladder ,Astronomy ,Astronomy and Astrophysics ,Radius ,Stars: statistics - Abstract
Using observational data available for a large number of Galactic Cepheids, we determine the relation between the radius and the period of pulsations, by means of a variant of the Baade-Wesselink method. Using, further, the brightness parameter according to the Barnes-Evans approach, we achieve our final goal, determination of the relation between the period and the mean luminosity. The coefficients in both relations are realistic. We indicate the need for accurate angular diameters of the Cepheids, which would be useful since the Cepheids are standard candles in the cosmic distance scale.
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- 2009
12. DepAstroCCD an original astrometric tool
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R. Pavlovic, I. Stojanovic, S. Segan, and P. Glisovic
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Physics ,lcsh:Astronomy ,business.industry ,Interface (computing) ,Autocorrelation ,Fast Fourier transform ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Techniques: image processing ,Astronomy and Astrophysics ,Astrometry ,Real image ,binaries: visual ,law.invention ,lcsh:QB1-991 ,Telescope ,Optics ,Software ,law ,Computer graphics (images) ,business ,Image gradient - Abstract
A complex software for preparation and treatment of astro photographic plates and double-star observations recorded with CCD cameras is developed. The preparation interface contains a catalogue base for the choice of observation objects and an interface for bringing into accordance the telescope and CCD camera performance with the assumptions of the postprocessor interface. The processing is based on the original development of image gradient removing software and classical FFT method and autocorrelation. The software has been tested on several theoretical and real images of double stars.
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- 2006
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13. Some results regarding the comparison of the Earth's atmospheric models
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B. Surlan and S. Segan
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Physics ,Atmospheric models ,Meteorology ,lcsh:Astronomy ,010308 nuclear & particles physics ,Earth ,Astronomy and Astrophysics ,Accelerometer ,01 natural sciences ,lcsh:QB1-991 ,Atmosphere ,Physics::Space Physics ,0103 physical sciences ,Orbit (dynamics) ,Astrophysics::Earth and Planetary Astrophysics ,010303 astronomy & astrophysics ,Realization (systems) ,Physics::Atmospheric and Oceanic Physics ,Earth (classical element) ,Remote sensing - Abstract
In this paper we examine air densities derived from our realization of aeronomic atmosphere models based on accelerometer measurements from satellites in a low Earth's orbit (LEO). Using the adapted algorithms we derive comparison parameters. The first results concerning the adjustment of the aeronomic models to the total-density model are given.
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- 2005
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14. Earth’s rotation irregularities derived from UTIBLI by method of multi-composing of ordinates
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S. Segan, B. Surlan, and Ivana Damjanov
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methods: numerical - time ,Physics ,010504 meteorology & atmospheric sciences ,lcsh:Astronomy ,business.industry ,Nutation ,Mathematical analysis ,Astronomy and Astrophysics ,Harmonic (mathematics) ,Span (engineering) ,Rotation ,methods: data analysis ,01 natural sciences ,Term (time) ,lcsh:QB1-991 ,Optics ,Ordinate ,0103 physical sciences ,business ,010303 astronomy & astrophysics ,0105 earth and related environmental sciences ,Earth's rotation - Abstract
Using the method of multi-composing of ordinates we have identified in Earth?s rotation a long-periodic term with a period similar to the relaxation time of Chandler nutation. There was not enough information to assess its origin. We demonstrate that the method can be used even in the case when the data time span is comparable to the period of harmonic component.
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- 2003
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15. Multi-composing of the ordinates as a spectral filter
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B. Surlan, Ivana Damjanov, and S. Segan
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lcsh:QB1-991 ,Physics ,Ordinate ,lcsh:Astronomy ,Filter (video) ,Spectral filtering ,Astronomy and Astrophysics ,Equidistant ,Construct (python library) ,methods: data analysis ,Algorithm ,methods: numerical - Abstract
In this paper we describe a method of plain and multi composing of ordinates to define spectral filters. We apply the method to the simulated equidistant observations, and we find that the suitable filters are easy to construct and apply.
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- 2003
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16. Raman Microspectroscopy Identifies Biochemical Activation Fingerprints in THP-1- and PBMC-Derived Macrophages.
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Feuerer N, Carvajal Berrio DA, Billing F, Segan S, Weiss M, Rothbauer U, Marzi J, and Schenke-Layland K
- Abstract
(1) The monocytic leukemia cell line THP-1 and primary monocyte-derived macrophages (MDMs) are popular in vitro model systems to study human innate immunity, wound healing, and tissue regeneration. However, both cell types differ significantly in their origin and response to activation stimuli. (2) Resting THP-1 and MDMs were stimulated with lipopolysaccharide (LPS) and interferon γ (IFNγ) and analyzed by Raman microspectroscopy (RM) before and 48 h after activation. Raman data were subsequently analyzed using principal component analysis. (3) We were able to resolve and analyze the spatial distribution and molecular composition of proteins, nucleic acids, and lipids in resting and activated THP-1 and MDMs. Our findings reveal that proinflammatory activation-induced significant spectral alterations at protein and phospholipid levels in THP-1. In MDMs, we identified that nucleic acid and non-membrane-associated intracellular lipid composition were also affected. (4) Our results show that it is crucial to carefully choose the right cell type for an in vitro model as the nature of the cells itself may impact immune cell polarization or activation results. Moreover, we demonstrated that RM is a sensitive tool for investigating cell-specific responses to activation stimuli and monitoring molecular changes in subcellular structures.
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- 2022
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17. Spectrum of neurologic & neuroimaging manifestation in COVID-19.
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Rehmani R, Segan S, Maddika SR, Lei YW, and Broka A
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Objective: Coronavirus Disease 2019 (COVID-19) initially thought to be confined to the respiratory system only, is now known to be a multisystem disease. It is critical to be aware of and timely recognize neurological and neuroradiological manifestations affecting patients with COVID-19, to minimize morbidity and mortality of affected patients., Methods: We performed a retrospective chart review of patients admitted to our Level 1 trauma and stroke center during the peak of the COVID-19 outbreak in New York from March 1st to May 30, 2020, with a positive test for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) who presented mainly with neurological findings and had acute radiological brain changes on Computed Tomography (CT) scan. Patients with known chronic neurological disease processes were excluded from the study. We obtained and reviewed demographics, complete blood count, metabolic panel, D-dimer, inflammatory markers such as erythrocyte sedimentation rate (ESR), C reactive protein (CRP), imaging, and patient's hospital course. We reviewed the current literature on neuroimaging, pathophysiology, and their clinical correlations on COVID-19. This case series study was approved by our institutional review board., Result: A total of 16 patients were selected for our case series. The most common neuroimaging features on CT, were territorial to multifocal ischemic infarcts, followed by a combination of ischemia and acute white matter encephalopathic changes, followed by temporal lobe predominant focal or more generalized encephalopathy with both confluent and non-confluent patterns, isolated cortical or more extensive intracranial hemorrhages and some combination of ischemia or hemorrhage and white matter changes. All our patients had severe acute respiratory distress syndrome (ARDS), most of them had elevated inflammatory markers, and D dimer., Conclusion: COVID-19 infection is a multi-organ disease, which can manifest as rapidly progressive neurological disease beyond the more common pulmonary presentation. Early recognition of various neurological findings and neuroimaging patterns in these patients will enable timely diagnosis and rapid treatment to reduce morbidity and mortality. Our retrospective study is limited due to small non-representative sample size, strict selection criteria likely underestimating the true extent of neurological manifestations of COVID-19, mono-modality imaging technique limited to predominantly CT scans and lack of CSF analysis in all except one patient. Multi-institutional, multi-modality, largescale studies are needed with radio-pathological correlation to better understand the complete spectrum of neurologic presentations in COVID-19 patients and study the causal relationship between SARS-CoV-2 and CNS disease process., (© 2021 The Authors.)
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- 2021
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18. The Impact of Biomaterial Cell Contact on the Immunopeptidome.
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Ghosh M, Hartmann H, Jakobi M, März L, Bichmann L, Freudenmann LK, Mühlenbruch L, Segan S, Rammensee HG, Schneiderhan-Marra N, Shipp C, Stevanović S, and Joos TO
- Abstract
Biomaterials play an increasing role in clinical applications and regenerative medicine. A perfectly designed biomaterial should restore the function of damaged tissue without triggering an undesirable immune response, initiate self-regeneration of the surrounding tissue and gradually degrade after implantation. The immune system is well recognized to play a major role in influencing the biocompatibility of implanted medical devices. To obtain a better understanding of the effects of biomaterials on the immune response, we have developed a highly sensitive novel test system capable of examining changes in the immune system by biomaterial. Here, we evaluated for the first time the immunopeptidome, a highly sensitive system that reflects cancer transformation, virus or drug influences and passes these cellular changes directly to T cells, as a test system to examine the effects of contact with materials. Since monocytes are one of the first immune cells reacting to biomaterials, we have tested the influence of different materials on the immunopeptidome of the monocytic THP-1 cell line. The tested materials included stainless steel, aluminum, zinc, high-density polyethylene, polyurethane films containing zinc diethyldithiocarbamate, copper, and zinc sulfate. The incubation with all material types resulted in significantly modulated peptides in the immunopeptidome, which were material-associated. The magnitude of induced changes in the immunopeptidome after the stimulation appeared comparable to that of bacterial lipopolysaccharides (LPS). The source proteins of many detected peptides are associated with cytotoxicity, fibrosis, autoimmunity, inflammation, and cellular stress. Considering all tested materials, it was found that the LPS-induced cytotoxicity-, inflammation- and cellular stress-associated HLA class I peptides were mainly induced by aluminum, whereas HLA class II peptides were mainly induced by stainless steel. These findings provide the first insights into the effects of biomaterials on the immunopeptidome. A more thorough understanding of these effects may enable the design of more biocompatible implant materials using in vitro models in future. Such efforts will provide a deeper understanding of possible immune responses induced by biomaterials such as fibrosis, inflammation, cytotoxicity, and autoimmune reactions., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2020 Ghosh, Hartmann, Jakobi, März, Bichmann, Freudenmann, Mühlenbruch, Segan, Rammensee, Schneiderhan-Marra, Shipp, Stevanović and Joos.)
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- 2020
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19. Letter: Dismantling the Apocalypse Narrative: The Myth of the COVID-19 Stroke.
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Miller A, Segan S, Rehmani R, Shabsigh R, and Rahme R
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- Humans, Narration, SARS-CoV-2, COVID-19, Stroke
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- 2020
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20. A novel epitope tagging system to visualize and monitor antigens in live cells with chromobodies.
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Traenkle B, Segan S, Fagbadebo FO, Kaiser PD, and Rothbauer U
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- Blotting, Western, CRISPR-Associated Protein 9, CRISPR-Cas Systems, Cells immunology, Cells ultrastructure, Electrophoresis, Polyacrylamide Gel, Fluorescent Antibody Technique, Gene Editing, HEK293 Cells, Humans, Immunoprecipitation, Microscopy, Confocal, Recombinant Proteins, Transfection, Antigens immunology, Epitopes immunology, Peptides immunology
- Abstract
Epitope tagging is a versatile approach to study different proteins using a well-defined and established methodology. To date, most epitope tags such as myc, HA, V5 and FLAG tags are recognized by antibodies, which limits their use to fixed cells, tissues or protein samples. Here we introduce a broadly applicable tagging strategy utilizing a short peptide tag (PepTag) which is specifically recognized by a nanobody (PepNB). We demonstrated that the PepNB can be easily functionalized for immunoprecipitation or direct immunofluorescence staining of Pep-tagged proteins in vitro. For in cellulo studies we converted the PepNB into a fluorescently labeled Pep-chromobody (PepCB) which is functionally expressed in living cells. The addition of the small PepTag does not interfere with the examined structures in different cellular compartments and its detection with the PepCB enables optical antigen tracing in real time. By employing the phenomenon of antigen-mediated chromobody stabilization (AMCBS) using a turnover-accelerated PepCB we demonstrated that the system is suitable to visualize and quantify changes in Pep-tagged antigen concentration by quantitative live-cell imaging. We expect that this novel tagging strategy offers new opportunities to study the dynamic regulation of proteins, e.g. during cellular signaling, cell differentiation, or upon drug action.
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- 2020
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21. Systematic Investigation of Polyurethane Biomaterial Surface Roughness on Human Immune Responses in vitro .
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Segan S, Jakobi M, Khokhani P, Klimosch S, Billing F, Schneider M, Martin D, Metzger U, Biesemeier A, Xiong X, Mukherjee A, Steuer H, Keller BM, Joos T, Schmolz M, Rothbauer U, Hartmann H, Burkhardt C, Lorenz G, Schneiderhan-Marra N, and Shipp C
- Subjects
- Anti-Inflammatory Agents immunology, Cytokines metabolism, HLA-DR Antigens metabolism, Humans, Leukocytes, Mononuclear immunology, Leukocytes, Mononuclear ultrastructure, Macrophages immunology, Macrophages ultrastructure, Male, Microscopy, Confocal, Microscopy, Electron, Scanning, Monocytes immunology, Monocytes ultrastructure, Surface Properties, T-Lymphocytes immunology, T-Lymphocytes ultrastructure, THP-1 Cells, Biocompatible Materials chemistry, Immunity, Polyurethanes chemistry
- Abstract
It has been widely shown that biomaterial surface topography can modulate host immune response, but a fundamental understanding of how different topographies contribute to pro-inflammatory or anti-inflammatory responses is still lacking. To investigate the impact of surface topography on immune response, we undertook a systematic approach by analyzing immune response to eight grades of medical grade polyurethane of increasing surface roughness in three in vitro models of the human immune system. Polyurethane specimens were produced with defined roughness values by injection molding according to the VDI 3400 industrial standard. Specimens ranged from 0.1 μ m to 18 μ m in average roughness (Ra), which was confirmed by confocal scanning microscopy. Immunological responses were assessed with THP-1-derived macrophages, human peripheral blood mononuclear cells (PBMCs), and whole blood following culture on polyurethane specimens. As shown by the release of pro-inflammatory and anti-inflammatory cytokines in all three models, a mild immune response to polyurethane was observed, however, this was not associated with the degree of surface roughness. Likewise, the cell morphology (cell spreading, circularity, and elongation) in THP-1-derived macrophages and the expression of CD molecules in the PBMC model on T cells (HLA-DR and CD16), NK cells (HLA-DR), and monocytes (HLA-DR, CD16, CD86, and CD163) showed no influence of surface roughness. In summary, this study shows that modifying surface roughness in the micrometer range on polyurethane has no impact on the pro-inflammatory immune response. Therefore, we propose that such modifications do not affect the immunocompatibility of polyurethane, thereby supporting the notion of polyurethane as a biocompatible material., Competing Interests: The authors declare that there is no conflict of interest regarding the publication of this paper., (Copyright © 2020 Sören Segan et al.)
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- 2020
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22. A Strategy to Optimize the Generation of Stable Chromobody Cell Lines for Visualization and Quantification of Endogenous Proteins in Living Cells.
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Keller BM, Maier J, Weldle M, Segan S, Traenkle B, and Rothbauer U
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Single-domain antibodies have emerged as highly versatile nanoprobes for advanced cellular imaging. For real-time visualization of endogenous antigens, fluorescently labelled nanobodies (chromobodies, CBs) are introduced as DNA-encoded expression constructs in living cells. Commonly, CB expression is driven from strong, constitutively active promoters. However, high expression levels are sometimes accompanied by misfolding and aggregation of those intracellular nanoprobes. Moreover, stable cell lines derived from random genomic insertion of CB-encoding transgenes bear the risk of disturbed cellular processes and inhomogeneous CB signal intensities due to gene positioning effects and epigenetic silencing. In this study we propose a strategy to generate optimized CB expressing cell lines. We demonstrate that expression as ubiquitin fusion increases the fraction of intracellularly functional CBs and identified the elongation factor 1α (EF1-α) promoter as highly suited for constitutive CB expression upon long-term cell line cultivation. Finally, we applied a CRISPR/Cas9-based gene editing approach for targeted insertion of CB expression constructs into the adeno-associated virus integration site 1 (AAVS1) safe harbour locus of human cells. Our results indicate that this combinatorial approach facilitates the generation of fully functional and stable CB cell lines for quantitative live-cell imaging of endogenous antigens.
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- 2019
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23. Second generation steroidal 4-aminoquinolines are potent, dual-target inhibitors of the botulinum neurotoxin serotype A metalloprotease and P. falciparum malaria.
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Videnović M, Opsenica DM, Burnett JC, Gomba L, Nuss JE, Selaković Z, Konstantinović J, Krstić M, Segan S, Zlatović M, Sciotti RJ, Bavari S, and Solaja BA
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- Aminoquinolines pharmacology, Animals, Antimalarials pharmacology, Chick Embryo, Chloroquine pharmacology, Drug Resistance, Hep G2 Cells, Humans, Molecular Docking Simulation, Protease Inhibitors pharmacology, Structure-Activity Relationship, Aminoquinolines chemical synthesis, Antimalarials chemical synthesis, Botulinum Toxins, Type A antagonists & inhibitors, Metalloproteases drug effects, Plasmodium falciparum drug effects, Protease Inhibitors chemical synthesis
- Abstract
Significantly more potent second generation 4-amino-7-chloroquinoline (4,7-ACQ) based inhibitors of the botulinum neurotoxin serotype A (BoNT/A) light chain were synthesized. Introducing an amino group at the C(3) position of the cholate component markedly increased potency (IC50 values for such derivatives ranged from 0.81 to 2.27 μM). Two additional subclasses were prepared: bis(steroidal)-4,7-ACQ derivatives and bis(4,7-ACQ)cholate derivatives; both classes provided inhibitors with nanomolar-range potencies (e.g., the Ki of compound 67 is 0.10 μM). During BoNT/A challenge using primary neurons, select derivatives protected SNAP-25 by up to 89%. Docking simulations were performed to rationalize the compounds' in vitro potencies. In addition to specific residue contacts, coordination of the enzyme's catalytic zinc and expulsion of the enzyme's catalytic water were a consistent theme. With respect to antimalarial activity, the compounds provided better IC90 activities against chloroquine resistant (CQR) malaria than CQ, and seven compounds were more active than mefloquine against CQR strain W2.
- Published
- 2014
- Full Text
- View/download PDF
24. In situ hinge craniectomy.
- Author
-
Ko K and Segan S
- Subjects
- Adult, Aged, Brain Injuries complications, Female, Humans, Intracranial Hypertension etiology, Intracranial Hypertension prevention & control, Male, Middle Aged, Stroke complications, Surgical Flaps, Treatment Outcome, Ventriculostomy, Brain Injuries surgery, Decompression, Surgical methods, Intracranial Hypertension surgery, Neurosurgical Procedures methods, Stroke surgery
- Abstract
Objective: To describe an optional method for performing decompressive craniectomy using in situ hinge craniectomy technique in patients with traumatic brain injury and stroke., Methods: Sixteen patients underwent surgery for treatment of presenting pathology followed by the placement of hinge craniectomy. The technique is detailed., Results: Six patients with traumatic head injury and 10 with stroke underwent treatment of their primary pathologies with subsequent hinge craniectomy. Of these patients, more than half underwent refixation of the hinge in a minor procedure after recovery. No patient had complications related to this technique and none required further cranial decompression. In patients with intracranial pressure monitoring, all displayed values in the normal range., Conclusion: In this limited study, in situ hinge craniectomy proved useful in the treatment of patients experiencing stroke or traumatic brain injury. This procedure has the potential to eliminate the additional second incision to explant the bone flap or the refrigeration storage of the bone flap. Also, the second operation to restore the cranial contour by reimplanting the bone flap or by the creation of a cranioplasty with artificial material would not be necessary.
- Published
- 2007
- Full Text
- View/download PDF
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