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The present study involves the chemical and bacteriological analysis of water from different sources i.e., bore, wells, bottle, and tap, from Peshawar, Mardan, Swat and Kohat districts of Khyber Pakhtunkhwa (KP) province, Pakistan. From each district, 50 water samples (10 samples from each source), regardless of urban and rural status, were collected from these sources and analysed for sulphates, nitrates, nitrites, chlorides, total soluble solids and coliforms (E. coli). Results indicated that majority of the water sources had unacceptable E. coli count i.e.> 34 CFU/100mL. E. coli positive samples were high in Mardan District, followed by Kohat, Swat and Peshawar district. Besides this, the some water sources were also chemically contaminated by different inorganic fertilizers (nitrates/nitrites of sodium, potassium) but under safe levels whereas agricultural and industrial wastes (chloride and sulphate compounds) were in unsafe range. Among all districts, the water quality was found comparatively more deteriorated in Kohat and Mardan districts than Peshawar and Swat districts. Such chemically and bacteriologically unfit water sources for drinking and can cause human health problems. Resumo O presente estudo envolve a análise química e bacteriológica de água de diferentes fontes, ou seja, furo, poços, garrafa e torneira, dos distritos de Peshawar, Mardan, Swat e Kohat da província de Khyber Pakhtunkhwa (KP), Paquistão. De cada distrito, 50 amostras de água (10 amostras de cada fonte), independentemente do status urbano e rural, foram coletadas dessas fontes e analisadas para sulfatos, nitratos, nitritos, cloretos, sólidos solúveis totais e coliformes (E. coli). Os resultados indicaram que a maioria das fontes de água tinha uma contagem inaceitável de E. coli, ou seja, > 34 UFC / 100 mL. As amostras positivas para E. coli foram elevadas no distrito de Mardan, seguido por Kohat, Swat e distrito de Peshawar. Além disso, algumas fontes de água também foram contaminadas quimicamente por diferentes fertilizantes inorgânicos (nitratos/nitritos de sódio, potássio), mas em níveis seguros, enquanto os resíduos agrícolas e industriais (compostos de cloreto e sulfato) estavam em níveis inseguros. Entre todos os distritos, a qualidade da água foi considerada comparativamente mais deteriorada nos distritos de Kohat e Mardan do que nos distritos de Peshawar e Swat. Essas fontes de água química e bacteriologicamente impróprias para beber podem causar problemas à saúde humana.

Plants have the ability to show responses against various environmental stresses. It is one of the necessities to understand stress response mechanisms to improve crops productivity and quality, under the stressed condition. The AP2/ERF transcription factors are one of the putative candidates that are involved in the regulation of biotic and abiotic stress. Most of the research has been conducted on functional analysis of AP2/ERF genes in many plants; however, a comprehensive review is required to show a broad picture of functionally characterized AP2/ERF in different plants. In this study, a comprehensive review is carried on genome-wide studies of AP2/ERF gene family and their evolutionary divergence in plant species including mustard (Arabidopsis, brassica), cereal (rice, wheat, maize, sorghum), and fiber (upland cotton and island cotton). Review exhibited that AP2/ERF superfamily is classified into four sub-families e.g. AP2, DREB, ERF, RAV and solicit, in which the ERF was the largest sub-family of AP2/ERF superfamily. Each subfamily was further divided into multiple groups and sub-groups. Furthermore, each plant species showed different number of paralogs showing correspondence to the plant genome size .e.g. higher genome possess higher gene copy number. The change in copy number may be due to either tandem gene duplication or whole genome duplication during evolutionary adaptation that developed special feature in plant species under environmental stresses. Moreover, current study also surveyed on the expression of AP/ERF genes with the conclusion that expression of AP2/ERF produced tolerance against biotic and abiotic stresses. However further studies are required to improve crops resistance by studying the same variables and gene families in different plants.

Funding Acknowledgements Type of funding sources: None. Introduction Postural Orthostatic Tachycardia Syndrome (POTS) is a disorder characterized by excessive orthostatic tachycardia and orthostatic intolerance. While traditional inflammatory biomarkers tend to be normal, a subclinical inflammatory process may be present in POTS. Purpose We aimed to analyse novel inflammatory biomarkers in POTS patients: Growth Differentiation Factor 15 (GDF15), Neutrophil Gelatinase Associated Lipocalin (NGAL), Intercellular Adhesion Molecule 1 (ICAM-1), Tumour Necrosis Factor Receptor 1 (TNFR1) and Tumour Necrosis Factor Receptor 2 (TNFR2) and compared them to healthy controls. These inflammatory biomarkers have been shown to be independent predictors of major adverse cardiovascular events in other populations. Methods An age- and sex-matched case-control study included 65 patients verified to have POTS by positive head-up tilt-testing and cardiovascular autonomic tests, and 65 healthy controls (mean age: 31.1 vs 31.5 years, 84% females) with negative active standing tests and no history of syncope, orthostatic intolerance, or endocrine disease. High-sensitivity chemiluminescence sandwich immunoassay was used to measure plasma levels of inflammatory biomarkers in a blinded fashion. Descriptive statistics compared groups and a univariate ANOVA was employed. Biomarker values were log-transformed. A score incorporating all biomarkers was generated to see if the totality of biomarkers discriminated POTS patients from controls. Results Baseline characteristics are displayed in Table 1. Mean levels of GDF15 (p=0.01), NGAL (p=0.003), ICAM-1 (p=0.04) and TNFR1 (p=0.03) were significantly higher in POTS vs controls, whereas TNFR2 (p=0.04) was significantly lower in POTS (p=0.04). The product of four upregulated biomarkers divided by TNFR2 produced a receiver operator curve (ROC) with an area under the curve (AUC) of 0.703 (p Conclusion POTS patients had increased GDF15, NGAL, TNFR1 and ICAM-1 levels and reduced TNFR2 levels suggesting underlying, yet undefined, subclinical inflammatory processes involving neutrophil and endothelial activation.

Background: Tourette syndrome (TS) is a childhood-onset neurodevelopmental disorder of complex genetic architecture and is characterized by multiple motor tics and at least one vocal tic persisting for more than 1 year. Methods: We performed a genome-wide meta-analysis integrating a novel TS cohort with previously published data, resulting in a sample size of 6133 individuals with TS and 13,565 ancestry-matched control participants. Results: We identified a genome-wide significant locus on chromosome 5q15. Integration of expression quantitative trait locus, Hi-C (high-throughput chromosome conformation capture), and genome-wide association study data implicated the NR2F1 gene and associated long noncoding RNAs within the 5q15 locus. Heritability partitioning identified statistically significant enrichment in brain tissue histone marks, while polygenic risk scoring of brain volume data identified statistically significant associations with right and left thalamus volumes and right putamen volume. Conclusions: Our work presents novel insights into the neurobiology of TS, thereby opening up new directions for future studies.

Mutations in the X-linked gene cyclin-dependent kinase-like 5 (CDKL5) cause a severe neurological disorder characterised by early-onset epileptic seizures, autism and intellectual disability (ID). Impaired hippocampal function has been implicated in other models of monogenic forms of autism spectrum disorders and ID and is often linked to epilepsy and behavioural abnormalities. Many individuals with CDKL5 deficiency disorder (CDD) have null mutations and complete loss of CDKL5 protein, therefore in the current study we used a novel Cdkl5 KO rat model to elucidate the impact of CDKL5 loss on cellular excitability and synaptic function of CA1 pyramidal cells (PCs). We hypothesised abnormal pre and/or post synaptic function underlie the enhanced LTP we observe in the hippocampus of Cdkl5 KO rats. We tested this hypothesis using a combination of extracellular and whole-cell electrophysiological recordings, biochemistry, and histology. We show that NMDA receptor function and subunit expression are unaltered throughout development, and Ca2+ permeable AMPA receptor mediated currents are unchanged in Cdkl5 KO rats. We observe reduced mEPSC frequency accompanied by increased spine density in basal dendrites of CA1 PCs, however we find no evidence supporting an increase in silent synapses when assessed using a minimal stimulation protocol in slices. Additionally, we found no change in paired-pulse ratio, consistent with normal release probability in Cdkl5 KO rats and supported by typical expression of pre-synaptic proteins in synaptosome preparations. Together these data indicate a role for CDKL5 in hippocampal synaptic function and raise the possibility that altered intracellular signalling rather than synaptic deficits might contribute to the altered plasticity.

Aim: To assess the relationship between dental fear and smoking among adolescents of 15-18 year of age in Pakistan Method: This study was a prospective crossectional survey design which was conducted in Lahore. After taking permission from the school’s head, data was collected from the male students of grade 9th, 10th, 11th and 12th using questionnaire and later on one of their parents was approached to fill the questionnaire. For this purpose, only one school was targeted. Sample size was of 200 participants whereas parents of all the student participants participated in the study. Results: The results of chi-square revealed that dental fear was quite high among male students, occasional use of tobacco, and use of mouthwash minimum thrice a day. It was also found that students of those parents whose occupational level was low reported higher dental fear. Conclusion: It was found that adolescent male students were found to have more dental fear who smoke tobacco as compared to those who do not smoke. It is important to ask about smoking habits as well as dental fear when examining oral health maintenance of adolescents. Keywords: Smoking, Tobacco, Adolescents, Dental fear

Thermokarst (Thaw) lakes are landforms found in topographic depressions created by thawing ground ice in permafrost zones. They play an important role in the regulation of climatic functions. These lakes are a manifestation of warming surface temperatures that accelerates the ice-rich permafrost to degrade by creating marshy hollows/ponds. In the current global warming scenario, the thermokarst lakes in the high mountain regions (Himalaya) are expected to grow further. This accelerate permafrost thawing which will affect the carbon cycle, hydrology and local ecosystems. This phenomenon has attracted huge scientific attention because it has led to a rapid mass change of glaciers in the region, including extensive changes occurring on peri-glacial environments. The most striking fact is the release of an enormous amount of greenhouse gases, including methane, carbon dioxide and nitrous oxide that is locked in these lakes. The present study delves into the thermokarst lakes in the upper reaches of Chandra Valley and Western Himalaya. The study also aims at designating the impact of their changes on the ecosystem, particularly their influence on the atmospheric greenhouse gas concentrations.

Glacier facies or radar glacier zones (RGZs) of the surge-type glaciers of the Karakoram Himalaya were classified based on the differences in the backscatter values utilizing multi-temporal SAR dat...

Green versus sol-gel synthesis of zinc oxide nanoparticles (ZnO NPs) were carried out and antimicrobial activity was evaluated against a wide panel of bacterial and fungal pathogens. Five plants seed extracts were used for green synthesis from Brassicaceae family, whereas the sol-gel method was adopted in the case of chemical synthesis. The ZnO NPs were characterized using Ultraviolet-Visible (UV-Vis), Energy Dispersive X-ray (EDX), X-ray Diffraction (XRD) and Scanning Electron Microscopy (SEM) techniques. The antimicrobial potential of the synthesized NPs was assessed against bacterial and fungal strains by disc diffusion method. The size of the ZnO NPs was in the range of 100–150 nm. The ZnO NPs showed promising antimicrobial activity and zones of inhibition were in the range of 10–20 mm, whereas Streptomycin (standard drug) showed the zone of inhibition of 25 mm. The synthesized ZnO NPs furnished promising antibacterial and antifungal potential. The green route of synthesis is rather safe and eco-friendly when compared to chemical route and could be used for the fabrication of ZnO NPs as an antimicrobial agent.

In order to understand the relationship between modern pollen spectra and vegetation, we analysed 20 surface sediment samples collected from the alpine zone of Kalla Bank glacier valley, Dhauligang...

Infections caused by hospital-associated methicillin-resistant Staphylococcus aureus (HA-MRSA) strains have higher morbidity and mortality rates and require longer hospital stays than do those caused by hospital-associated methicillin-sensitive Staphylococcus aureus strains. To gain insight into their genomic makeup, antimicrobial resistance, biofilm formation, and virulence potentials, here we present the draft whole-genome sequences of 27 HA-MRSA strains isolated in Minnesota.

Axion Dark Matter eXperiment (ADMX) ultra low noise haloscope technology has enabled the successful completion of two science runs (1A and 1B) that looked for dark matter axions in the $2.66$ to $3.1$ $\mu$eV mass range with Dine-Fischler-Srednicki-Zhitnisky (DFSZ) sensitivity Ref. [1,2]. Therefore, it is the most sensitive axion search experiment to date in this mass range. We discuss the technological advances made in the last several years to achieve this sensitivity, which includes the implementation of components, such as state-of-the-art quantum limited amplifiers and a dilution refrigerator. Furthermore, we demonstrate the use of a frequency tunable Microstrip Superconducting Quantum Interference Device (SQUID) Amplifier (MSA), in Run 1A, and a Josephson Parametric Amplifier (JPA), in Run 1B, along with novel analysis tools that characterize the system noise temperature., Comment: 23 pages, 28 figures

Methicillin-resistant Staphylococcus aureus (MRSA) is a pathogenic bacterium responsible for difficult-to-treat staphylococcal infections due to multidrug resistance. Twelve Panton-Valentine leucocidin (PVL)-positive and multidrug-resistant clinical MRSA isolates from hospitals in Pakistan were sequenced and annotated to investigate genetic markers associated with antimicrobial resistance, virulence, and biofilm formation.

We present the draft genome sequences of nine hospital-associated methicillin-susceptible Staphylococcus aureus (HA-MSSA) strains. All strains were from Minnesota (eight from blood and one from bone), harbored various virulence genes, and showed diverse multilocus sequence typing and spa types.

A catastrophic flood occurred on 7 February 2021 around 10:30 AM (local time) in the Rishiganga River, which has been attributed to a rockslide in the upper reach of the Raunthi River. The Resourcesat 2 LISS IV (8 February 2021) and CNES Airbus satellite imagery (9 February 2021) clearly show the location of displaced materials. The solar radiation observed was higher than normal by 10% and 25% on 6 and 7 February 2021, respectively, however, the temperature shows up to 34% changes. These conditions are responsible for the sudden change in instability in glacier blocks causing deadly rock-ice slides that led to the collapse of the hanging glacier as a wedge failure. The displaced materials mixed with ice, snow, and debris caused catastrophic floods downstream within no time that destroyed critical infrastructure and killed human lives. The hydrodynamic modelling (HEC-RAS software) shows mean flow velocity up to 22.4 ± 8.6 m/s with an average depth of 16.3 ± 6.5 m that caused deadly devastation in the source region and along the rivers due to the flow of water in the valley.

Satellites associated begomoviruses are the most diverse group of plant viruses in tropical and subtropical regions. In Pakistan, during field surveys in 2019-2020, Sonchus palustris (a weed plant) was observed showing begomovirus symptoms i.e., vein yellowing and mosaic patterns on leaves. Rolling circle amplification from total isolated DNA of symptomatic leaves was performed to amplify circular viral genomes. Subsequent cloning and sequencing showed that a new strain of Alternanthera yellow vein virus (AlYVV) is associated with vein yellowing disease of S. palustris. The identity percentage analysis through BLAST search and SDT analysis showed that the new strain is 94-98% identical to AlYVV isolates reported from Pakistan, India and China. In phylogenetic tree, it clustered with AlYVV-[PK:E prostrata:15-KX710155], AlYVV-[PK:E prostrata:13]-KX906697] and AlYVV-[PK:E prostrata:11]-KX906694] previously reported from Pakistan. There was no detectable level of betasatellite or any other satellite molecule in the samples studied here. Phylogenetic analysis of Rep and CP genes of AlYVV with corresponding genes of closely related viruses circulating in Southeast Asia showed intra-specific recombination involving both complementary and virion sense region of virus. Relaxed clock and Bayesian Skyline Plot analysis based on CP gene sequences indicated slight higher substitution rates (4.75 x 10-3 substitutions/nucleotide/year). In the Indian subcontinent satellite-associated monopartite begomoviruses predominately infect crops and non-crop plants. But AlYVV is found infecting mostly non-crop plants independent of satellite molecules. We hypothesize here that AlYVV evolved as a true monopartite begomovirus in the Indian sub-continent and could be a great threat to introduced crops under suitable conditions. Such studies are crucial to understand probable future epidemics of begomoviruses in the region. Resumo Os begomovírus associados aos satélites são o grupo mais diversificado de vírus de plantas encontrado em regiões tropicais e subtropicais. No Paquistão, durante pesquisas de campo entre 2019 e 2020, a espécie Sonchus palustris L. (uma planta daninha) foi observada apresentando sintomas de begomovírus, ou seja, amarelecimento das veias e padrões de mosaico nas folhas. A Amplificação em Círculo Rolante (ACR) a partir de DNA isolado total de folhas sintomáticas foi realizada para amplificar genomas virais circulares. A clonagem e sequenciamento subsequentes mostraram que uma nova cepa de Alternanthera yellow vein virus (AlYVV) está associada à doença do amarelecimento das veias de S. palustris. A análise da porcentagem de identidade por meio de pesquisa BLAST e análise SDT mostrou que a nova cepa é 94-98% idêntica aos isolados de AlYVV relatados no Paquistão, Índia e China. Na árvore filogenética, essa cepa se agrupou com AlYVV-[PK:E prostrata:15-KX710155], AlYVV-[PK:E prostrata:13]-KX906697] e AlYVV-[PK:E prostrata:11]-KX906694] relatada anteriormente de Paquistão. Não houve nível detectável de betassatélite ou qualquer outra molécula satélite nas amostras estudadas aqui. A análise filogenética de genes Rep e CP de AlYVV com genes correspondentes de vírus intimamente relacionados que estão circulando no Sudeste Asiático mostrou recombinação intraespecífica envolvendo a região complementar e de sentido viral do vírus. Relógio molecular relaxado e análise de Bayesian Skyline Plot (BSP) com base nas sequências do gene CP indicaram taxas de substituição ligeiramente mais altas (4,75 x 10-3 substituições/nucleotídeo/ano). No subcontinente indiano, os begomovírus monopartidos associados aos satélites infectam predominantemente culturas e plantas não cultivadas. Mas o AlYVV é encontrado infectando principalmente plantas não cultivadas, independentemente de moléculas satélites. Desenvolveu-se a hipótese de que o AlYVV evoluiu como um verdadeiro begomovírus monopartido no subcontinente indiano e pode ser uma grande ameaça às culturas introduzidas em condições adequadas. Tais estudos são cruciais para entender prováveis e futuras epidemias de begomovírus na região.

Here, we report the draft genome sequences of eight community-associated methicillin-resistant Staphylococcus aureus strains that were resistant to cefoxitin, ampicillin, and erythromycin. Three isolates, i.e., CAR1, CAR2, and CAR8, were sequence type 8 (ST8) with staphylococcal cassette chromosome mec (SCC mec ) type IVa and were Panton-Valentine leukocidin (PVL) positive, which has been known as a predominant clone in the United States.