291 results on '"S Butcher"'
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2. Attention-Aware Visualization: Tracking and Responding to User Perception Over Time.
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Arvind Srinivasan 0001, Johannes Ellemose, Peter W. S. Butcher, Panagiotis D. Ritsos, and Niklas Elmqvist
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- 2025
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3. The Reality of the Situation: A Survey of Situated Analytics.
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Sungbok Shin, Andrea Batch, Peter W. S. Butcher, Panagiotis D. Ritsos, and Niklas Elmqvist
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- 2024
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4. Wizualization: A "Hard Magic" Visualization System for Immersive and Ubiquitous Analytics.
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Andrea Batch, Peter W. S. Butcher, Panagiotis D. Ritsos, and Niklas Elmqvist
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- 2024
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5. Is Native Naïve? Comparing Native Game Engines and WebXR as Immersive Analytics Development Platforms.
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Peter W. S. Butcher, Andrea Batch, David Saffo, Blair MacIntyre, Niklas Elmqvist, and Panagiotis D. Ritsos
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- 2024
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6. Don't Pull the Balrog - Lessons Learned from Designing Wizualization: a Magic-inspired Data Analytics System in XR.
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Peter W. S. Butcher, Andrea Batch, Panagiotis D. Ritsos, and Niklas Elmqvist
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- 2023
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7. Path-based Design Model for Constructing and Exploring Alternative Visualisations.
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James Jackson, Panagiotis D. Ritsos, Peter W. S. Butcher, and Jonathan C. Roberts
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- 2024
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8. Attention-Aware Visualization: Tracking and Responding to User Perception Over Time.
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Arvind Srinivasan 0001, Johannes Ellemose, Peter W. S. Butcher, Panagiotis D. Ritsos, and Niklas Elmqvist
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- 2024
- Full Text
- View/download PDF
9. Movable typing of full‐lumen personalized Vein‐Chips to model cerebral venous sinus thrombosis
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Yunduo Charles Zhao, Yingqi Zhang, Arian Nasser, Tianbo Hong, Zihao Wang, Allan Sun, Laura Moldovan, Leon S Edwards, Freda Passam, Ken S Butcher, Timothy Ang, and Lining Arnold Ju
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3D printing ,cerebral venous sinus thrombosis ,mechanobiology ,Organ on chip ,platelet ,Virchow's triad ,Chemistry ,QD1-999 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Cerebral venous sinus thrombosis (CVST) is a type of stroke associated with COVID‐19 vaccine‐induced immune thrombotic thrombocytopenia. The precise etiology of CVST often remains elusive due to the highly heterogeneous nature of its governing mechanisms, specifically, Virchow's triad that involves altered blood flow, endothelial dysfunction, and hypercoagulability, which varies substantially amongst individuals. Existing diagnostic and monitoring approaches lack the capability to reflect the combination of these patient‐specific thrombotic determinants. In response to this challenge, we introduce a Vein‐Chip platform that recapitulates the CVST vascular anatomy from magnetic resonance venography and the associated hemodynamic flow profile using the “Chinese Movable Type‐like” soft stereolithography technique. The resultant full‐lumen personalized Vein‐Chips, functionalized with endothelial cells, enable in‐vitro thrombosis assays that can elucidate distinct thrombogenic scenarios between normal vascular conditions and those of endothelial dysfunction. The former displayed minimal platelet aggregation and negligible fibrin deposition, while the latter presented significant fibrin extrusion from platelet aggregations. The low‐cost movable typing technique further enhances the potential for commercialization and broader utilization of personalized Vein‐Chips in surgical labs and at‐home monitoring. Future research and development in this direction will pave the way for improved management and prevention of CVST, ultimately benefiting both patients and healthcare systems.
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- 2023
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10. Cybersecurity in a Large-Scale Research Facility—One Institution’s Approach
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David S. Butcher, Christian J. Brigham, James Berhalter, Abigail L. Centers, William M. Hunkapiller, Timothy P. Murphy, Eric C. Palm, and Julia H. Smith
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cybersecurity ,user facility ,FAIR data ,open access ,release of stored energy ,cyberattack ,Technology (General) ,T1-995 - Abstract
A cybersecurity approach for a large-scale user facility is presented—utilizing the National High Magnetic Field Laboratory (NHMFL) at Florida State University (FSU) as an example. The NHMFL provides access to the highest magnetic fields for scientific research teams from a range of disciplines. The unique challenges of cybersecurity at a widely accessible user facility are showcased, and relevant cybersecurity frameworks for the complex needs of a user facility with industrial-style equipment and hazards are discussed, along with the approach for risk identification and management, which determine cybersecurity requirements and priorities. Essential differences between information technology and research technology are identified, along with unique requirements and constraints. The need to plan for the introduction of new technology and manage legacy technologies with long usage lifecycles is identified in the context of implementing cybersecurity controls rooted in pragmatic decisions to avoid hindering research activities while enabling secure practices, which includes FAIR (findable, accessible, interoperable, and reusable) and open data management principles. The NHMFL’s approach to FAIR data management is presented. Critical success factors include obtaining resources to implement and maintain necessary security protocols, interdisciplinary and diverse skill sets, phased implementation, and shared allocation of NHMFL and FSU responsibilities.
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- 2023
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11. Evaluating View Management for Situated Visualization in Web-based Handheld AR.
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Andrea Batch, Sungbok Shin, J. Liu, Peter W. S. Butcher, Panagiotis D. Ritsos, and Niklas Elmqvist
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- 2023
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12. Explanatory Journeys: Visualising to Understand and Explain Administrative Justice Paths of Redress.
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Jonathan C. Roberts, Peter W. S. Butcher, Ann Sherlock, and Sarah Nason
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- 2022
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13. Abstract Number ‐ 49: Risk of HT with Early DOACs after Acute Ischemic Stroke: A Pooled Analysis
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Anas Alrohimi, David Z Rose, Scott Burgin, Swetha Renati, Hilker Corbin, Wei Deng, Guilherme H Oliveira, Theresa M Beckie, Arthur J Labovitz, Michael G Fradley, Nhi Tran, Laura C Gioia, Mahesh Kate, Kelvin Ng, Dar Dowlatshahi, Thalia S Field, Shelagh B Coutts, Muzzafar Siddiqui, Michael D Hill, Jodi Miller, Glen Jickling, Ashfaq Shuaib, Brian Buck, Mike Sharma, and Ken S Butcher
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Neurology. Diseases of the nervous system ,RC346-429 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Introduction The risk of hemorrhagic transformation (HT) in the early phase of acute ischemic stroke (AIS) remains unknown, leading to potential unnecessary delays in initiation of anticoagulation for secondary stroke prevention. We sought to assess the rate of HT associated withdirect oral anticoagulant (DOAC) initiation within and beyond 48 hours after AIS, using a pooled analysis of available published data. Methods A pooled analysis of 6 studies (4 prospective observational blinded outcome studies and2 randomized trials) of DOAC initiation within 14 days of AIS or transient ischemic attack (TIA) was conducted. The primary endpoint was incident radiographic HT on follow‐up imaging. Secondary endpoints included symptomatic HT, new parenchymal hemorrhage, recurrent ischemic events, extracranial hemorrhage, mortality within the study period, and follow‐up modified Rankin Scale score.The results were reported as odds ratio (OR) andhazard ratio (HR)with 95% confidence interval (CI). Results We evaluated 509 patients; median infarct volume was1.5 (0.1‐7.8) ml, andmedian National Institutes of Health Stroke Scale was2 (0‐3).Incident radiographic HT was seen on follow‐up scan in 34 (6.8%) patients.DOAC initiation within 48 hours from index event was not associated with incident HT (adjusted OR 0.67, [0.30 – 1.50]P = 0.32).No patients developed symptomatic HT.Conversely, 31 (6.1%) patients developedrecurrent ischemic events, 64% of which occurred within 14 days.Initiating a DOAC within 48 hours of onset was associated with a trend towards lower rates of recurrent ischemic events, but this was not statistically significant (HR 0.42, [0.17 – 1.008]P = 0.052). In contrast to HT,recurrent ischemic events were associated with poor functional outcomes (OR = 6.8, [2.84 – 16.24], p< 0.001). Conclusions Initiation of DOAC within 48 hours after stroke was not associated with decreased risk of recurrent ischemic events, or increasedincident risk of HT. Both recurrent ischemic events and incident HT occurred at similar rates.Unlike HT, however, recurrent ischemic events were associated with poor outcomes.
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- 2023
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14. The Reality of the Situation: A Survey of Situated Analytics.
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Sungbok Shin, Andrea Batch, Peter W. S. Butcher, Panagiotis D. Ritsos, and Niklas Elmqvist
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- 2023
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15. Most endovascular thrombectomy patients have Target Mismatch despite absence of formal CT perfusion selection criteria
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Jayden C. Subramaniam, Andrew Cheung, Nathan Manning, Justin Whitley, Dennis Cordato, Alessandro Zagami, Cecilia Cappelen-Smith, Huiqiao Tian, Chris Levi, Mark Parsons, and Ken S. Butcher
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Medicine ,Science - Published
- 2023
16. Visualising Collocation for Close Writing.
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Jonathan C. Roberts, Peter W. S. Butcher, Robert Lew, Geraint Paul Rees, Nirwan Sharma, and Ana Frankenberg-Garcia
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- 2020
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17. VRIA: A Web-Based Framework for Creating Immersive Analytics Experiences.
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Peter W. S. Butcher, Nigel W. John, and Panagiotis D. Ritsos
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- 2021
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18. Evolution of Seismicity During a Stalled Episode of Reawakening at Cayambe Volcano, Ecuador
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S. Butcher, A. F. Bell, S. Hernandez, and M. Ruiz
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long-period seismicity ,volcano-seismic swarms ,volcano-glacier interactions ,volcanic monitoring ,volcano-tectonic interactions ,Science - Abstract
Cayambe Volcano is an ice-capped, 5,790 m high, andesitic-dacitic volcanic complex, located on the equator in the Eastern Cordillera of the Ecuadorian Andes. An eruption at Cayambe would pose considerable hazards to surrounding communities and a nationally significant agricultural industry. Although the only historically documented eruption was in 1785, it remains persistently restless and long-period (LP) seismicity has been consistently observed at the volcano for over 10 years. However, the sparse monitoring network, and complex interactions between the magmatic, hydrothermal, glacial, and tectonic systems, make unrest at Cayambe challenging to interpret. In June 2016 a seismic “crisis” began at Cayambe, as rates of high frequency volcano-tectonic (VT) earthquakes increased to hundreds of events per day, leading to speculation about the possibility of a forthcoming eruption. The crisis began 2 months after the Mw7.8 Pedernales earthquake, which occurred on the coast, 200 km from Cayambe. Here we show that the 2016 seismicity at Cayambe resulted from four distinct source processes. Cross correlation, template matching, and spectral analysis isolate two source regions for VT earthquakes–tectonic events from a regional fault system and more varied VTs from beneath the volcanic cone. The temporal evolution of the LP seismicity, and mean Q value of 9.9, indicate that these events are most likely generated by flow of hydrothermal fluids. These observations are consistent with a model where a new pulse of magma ascent initially stresses regional tectonic faults, and subsequently drives elevated VT seismicity in the edifice. We draw comparisons from models of volcano-tectonic interactions, and speculate that static stress changes from the Pedernales earthquake put Cayambe volcano in an area of dilation, providing a mechanism for magma ascent. Our findings provide a better understanding of “background” seismicity at Cayambe allowing faster characterization of future crises, and a benchmark to measure changes driven by rapid glacial retreat.
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- 2021
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19. 3D Visualisations Should Not be Displayed Alone - Encouraging a Need for Multivocality in Visualisation.
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Jonathan C. Roberts, Joseph W. Mearman, Peter W. S. Butcher, Hayder Mahdi Al-Maneea, and Panagiotis D. Ritsos
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- 2021
20. Explanatory Journeys: Visualising to Understand and Explain Administrative Justice Paths of Redress.
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Jonathan C. Roberts, Peter W. S. Butcher, Ann Sherlock, and Sarah Nason
- Published
- 2021
21. Multiple Views: different meanings and collocated words.
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Jonathan C. Roberts, Hayder Al-Maneea, Peter W. S. Butcher, Robert Lew, Geraint Rees 0002, Nirwan Sharma, and Ana Frankenberg-Garcia
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- 2019
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22. Time Course of Early Hematoma Expansion in Acute Spot-Sign Positive Intracerebral Hemorrhage: Prespecified Analysis of the SPOTLIGHT Randomized Clinical Trial
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Fahad S. Al-Ajlan, David J. Gladstone, Dongbeom Song, Kevin E. Thorpe, Rick H. Swartz, Kenneth S. Butcher, Martin del Campo, Dar Dowlatshahi, Henrik Gensicke, Gloria Jooyoung Lee, Matthew L. Flaherty, Michael D. Hill, Richard I. Aviv, Andrew M. Demchuk, Richard H. Swartz, Karl Boyle, Maria Braganza, Nadia Fedasko, Dolores Golob, Edith Bardi, Samantha Senyshyn, Megan Cayley, Connie Colavecchia, Shelagh Coutts, Gary Klein, Bijoy Menon, Tim Watson, Eric Smith, Suresh Subramaniam, Simerpreet Bal, Philip Barber, Marie-Christine Camden, Myles Horton, Sachin Mishra, Vivek Nambiar, Andres Venegas Torres, Sweta Adatia, Amjad Alseraya, Jamsheed Desai, Jennifer Mandzia, Michel Shamy, Anurag Trivedi, Philip Choi, Veronique Dubuc, Evgenia Klourfeld, Thalia Field, Dilip Singh, Tapuwa Musuka, Sarah Bloujney, Davar Nikneshan, Oje Imoukhuede, Amy Yu, Ramana Appireddy, Jamie Evans, Karla Ryckborst, Carly Calvert, Dariush Dowlatshahi, Grant Stotts, Mukul Sharma, Sohail Robert, Melodie Mortensen, Rany Shamloul, Martin Del Campo, Frank L. Silver, Leanne Casaubon, Cheryl Jaigobin, Yael Perez, Libby Kalman, Jemini Abraham, Relu Wiegner, Anne Cayley, Victoria Riediger, Ken Butcher, Mahesh Kate, Thomas Jeerakathil, Ashfaq Shuaib, Sylvia Gaucher, Leka Sivakumar, Samuel Yip, Philip Teal, Andrew Woolfenden, Oscar Benavente, Jeff Beckman, Colleen Murphy, Negar Asdaghi, Karina Villaluna-MurrVay, Demetrios J. Sahlas, Almunder Algird, Jordan Knapman, Sue Macmillan, Janice Sancan, Manu Mehdiratta, Verity John, AlNoor Dhanani, Bryan Temple, Andre Douen, Daniel Selchen, Gustavo Saposnik, Pawel Kostyrko, Richard Chan, Bryan Young, Balagopal Kumar, Peter Soros, Kimberley Hesser, Mary Wright, Connie Frank, Belinda Amato-Marziali, Yan Deschaintre, Alexandre Poppe, Marlene Lapierre, Jean-Martin Boulanger, Leo Berger, Lise Blais, Christel Simard, Jeanne Teitelbaum, Natasha Campbell, Al Jin, Adriana Breen, and Suzanne Bickford
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Advanced and Specialized Nursing ,Neurology (clinical) ,Cardiology and Cardiovascular Medicine - Abstract
Background: In the SPOTLIGHT trial (Spot Sign Selection of Intracerebral Hemorrhage to Guide Hemostatic Therapy), patients with a computed tomography (CT) angiography spot-sign positive acute intracerebral hemorrhage were randomized to rFVIIa (recombinant activated factor VIIa; 80 μg/kg) or placebo within 6 hours of onset, aiming to limit hematoma expansion. Administration of rFVIIa did not significantly reduce hematoma expansion. In this prespecified analysis, we aimed to investigate the impact of delays from baseline imaging to study drug administration on hematoma expansion. Methods: Hematoma volumes were measured on the baseline CT, early post-dose CT, and 24 hours CT scans. Total hematoma volume (intracerebral hemorrhage+intraventricular hemorrhage) change between the 3 scans was calculated as an estimate of how much hematoma expansion occurred before and after studying drug administration. Results: Of the 50 patients included in the trial, 44 had an early post-dose CT scan. Median time (interquartile range) from onset to baseline CT was 1.4 hours (1.2–2.6). Median time from baseline CT to study drug was 62.5 (55–80) minutes, and from study drug to early post-dose CT was 19 (14.5–30) minutes. Median (interquartile range) total hematoma volume increased from baseline CT to early post-dose CT by 10.0 mL (−0.7 to 18.5) in the rFVIIa arm and 5.4 mL (1.8–8.3) in the placebo arm ( P =0.96). Median volume change between the early post-dose CT and follow-up scan was 0.6 mL (−2.6 to 8.3) in the rFVIIa arm and 0.7 mL (−1.6 to 2.1) in the placebo arm ( P =0.98). Total hematoma volume decreased between the early post-dose CT and 24-hour scan in 44.2% of cases (rFVIIa 38.9% and placebo 48%). The adjusted hematoma growth in volume immediately post dose for FVIIa was 0.998 times that of placebo ([95% CI, 0.71–1.43]; P =0.99). The hourly growth in FFVIIa was 0.998 times that for placebo ([95% CI, 0.994–1.003]; P =0.50; Table 3). Conclusions: In the SPOTLIGHT trial, the adjusted hematoma volume growth was not associated with Factor VIIa treatment. Most hematoma expansion occurred between the baseline CT and the early post-dose CT, limiting any potential treatment effect of hemostatic therapy. Future hemostatic trials must treat intracerebral hemorrhage patients earlier from onset, with minimal delay between baseline CT and drug administration. Registration: URL: https://www.clinicaltrials.gov ; Unique identifier: NCT01359202.
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- 2023
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23. Infiltration efficiency and subsurface water processes of a sustainable drainage system and consequences to flood management
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Nicole A. L. Archer, Rachel A. Bell, Andrew S. Butcher, and Stephanie H. Bricker
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groundwater ,natural flood management ,sustainable drainage systems ,urban drainage ,River protective works. Regulation. Flood control ,TC530-537 ,Disasters and engineering ,TA495 - Abstract
Abstract With increased intensity rainfall events globally and urban expansion decreasing permeable surfaces, there is an increasing problem of urban flooding. This study aims to better understand rainfall infiltration into a Sustainable Drainage System (SuDS) permeable pavement, compared with an adjacent Green Area of made ground, in relationship to groundwater levels below both areas. Both areas were instrumented with soil water content and matric potential sensors and four shallow boreholes were instrumented with groundwater level sensors. Surface infiltration rates were measured using a double‐ring infiltrometer. Results showed that average infiltration rates of the SuDS (1,925 mm/hr) were significantly higher than the Green Area (56 mm/hr). The SuDS was well designed to transfer rainfall rapidly to the aquifer below, where groundwater levels rapidly rose within 1 hr of a 1 in 30 year event (32.8 mm/hr). In comparison, soil compaction of the made ground Green Area decreased infiltration rates, but still enabled the majority of rainfall events to infiltrate. The aquifer below the Green Area responded more slowly, as lower matrix potentials facilitated water retention in the soil profile, slowing water draining to the aquifer. This work reiterates the importance of ensuring a 1 m separation depth between the base of the SuDS infiltration zone and aquifer depth.
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- 2020
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24. LUCST: A novel toolkit for Land Use Land Cover change assessment in SWAT+ to support flood management decisions.
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Alexander M. F. Rigby, Peter W. S. Butcher, Panagiotis D. Ritsos, and Sopan D. Patil
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- 2022
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25. One View Is Not Enough: Review of and Encouragement for Multiple and Alternative Representations in 3D and Immersive Visualisation.
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Jonathan C. Roberts, Peter W. S. Butcher, and Panagiotis D. Ritsos
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- 2022
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26. Traversing Social Networks in the Virtual Dance Hall: Visualizing History in VR.
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Helen Vera Southall, Lee Beever, and Peter W. S. Butcher
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- 2017
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27. Building Immersive Data Visualizations for the Web.
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Peter W. S. Butcher and Panagiotis D. Ritsos
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- 2017
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28. Analysis of Isotopically Depleted Proteins Derived from Escherichia coli and Caenorhabditis elegans Cell Lines by Liquid Chromatography 21 T Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry
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Zeljka Popovic, Lissa C. Anderson, Xuepei Zhang, David S. Butcher, Greg T. Blakney, Roman A. Zubarev, and Alan G. Marshall
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Structural Biology ,Spectroscopy - Published
- 2023
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29. VRIA - A Framework for Immersive Analytics on the Web.
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Peter W. S. Butcher, Nigel W. John, and Panagiotis D. Ritsos
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- 2019
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30. Lower Blood Pressure Is Not Associated With Decreased Arterial Spin Labeling Estimates of Perfusion in Intracerebral Hemorrhage
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Ana C. Klahr, Jayme C. Kosior, Dariush Dowlatshahi, Brian H. Buck, Christian Beaulieu, Laura C. Gioia, Hayrapet Kalashyan, Alan H. Wilman, Thomas Jeerakathil, Derek J. Emery, Ashfaq Shuaib, and Kenneth S. Butcher
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arterial spin labeling ,blood pressure ,intracerebral hemorrhage ,magnetic resonance imaging ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Subacute ischemic lesions in intracerebral hemorrhage (ICH) have been hypothesized to result from hypoperfusion. Although studies of cerebral blood flow (CBF) indicate modest hypoperfusion in ICH, these investigations have been limited to early time points. Arterial spin labeling (ASL), a magnetic resonance imaging technique, can be used to measure CBF without a contrast agent. We assessed CBF in patients with ICH using ASL and tested the hypothesis that CBF is related to systolic blood pressure (SBP). Methods and Results In this cross‐sectional study, patients with ICH were assessed with ASL at 48 hours, 7 days, and/or 30 days after onset. Relative CBF (rCBF; ratio of ipsilateral/contralateral perfusion) was measured in the perihematomal regions, hemispheres, border zones, and the perilesional area in patients with diffusion‐weighted imaging hyperintensities. Twenty‐patients (65% men; mean±SD age, 68.5±12.7 years) underwent imaging with ASL at 48 hours (N=12), day 7 (N=6), and day 30 (N=11). Median (interquartile range) hematoma volume was 13.1 (6.3–19.3) mL. Mean±SD baseline SBP was 185.4±25.5 mm Hg. Mean perihematomal rCBF was 0.9±0.2 at 48 hours at all time points. Baseline SBP and other SBP measurements were not associated with a decrease in rCBF in any of the regions of interest (P≥0.111). rCBF did not differ among time points in any of the regions of interest (P≥0.097). Mean perilesional rCBF was 1.04±0.65 and was unrelated to baseline SBP (P=0.105). Conclusions ASL can be used to measure rCBF in patients with acute and subacute ICH. Perihematomal CBF was not associated with SBP changes at any time point. Clinical Trial Registration URL: http://www.clinicaltrials.gov. Unique identifier: NCT00963976.
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- 2019
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31. Timing of Anticoagulation after Acute Ischemic Stroke in Patients with Atrial Fibrillation
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Anas Alrohimi, Glen Jickling, Brian Buck, and Ken S. Butcher
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Neurology ,Neurology (clinical) ,General Medicine - Abstract
Patients with atrial fibrillation (AF) and ischemic stroke are at high risk for stroke recurrence. Early anticoagulation may reduce the risk of recurrent events but is usually avoided due to the risk of hemorrhagic transformation (HT). Current guidelines are based on empiric expert opinion. The assumed risk of HT is based on historical data from an older generation of anticoagulants. The direct oral anticoagulants (DOACs) have demonstrated lower risk of intracranial hemorrhage compared to older anticoagulants. However, the optimal timing of DOAC initiation after AF-related ischemic stroke has remained an area of clinical equipoise, as the pivotal phase III trials did not include patients in the early period after ischemic stroke. Multiple prospective studies and a few smaller randomized controlled trials evaluating the safety and efficacy of early versus delayed DOAC initiation have been completed. These studies have reported promising results of early DOAC initiation after acute ischemic stroke. However, a standardized documentation of HT rates on follow-up imaging with objective assessment criteria is missing from most of these studies. Larger randomized trials of early versus delayed DOAC are ongoing. A literature review was performed using keywords and Medical Subject Headings in MEDLINE/PubMed and Google Scholar databases. For each relevant paper, the bibliography was scrutinized for other relevant articles and journals. In this article, we review the risk of recurrent ischemic stroke and HT in patients with AF, pathophysiology, classification, predictors, natural history, and outcomes of HT and discuss the studies of early anticoagulation after AF-related ischemic stroke.
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- 2022
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32. Intravenous Thrombolysis May Not Improve Clinical Outcome of Acute Ischemic Stroke Patients Without a Baseline Vessel Occlusion
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Huiqiao Tian, Mark W. Parsons, Christopher R. Levi, Xin Cheng, Richard I. Aviv, Neil J. Spratt, Timothy J. Kleinig, Billy O'Brien, Kenneth S. Butcher, Longting Lin, Jingfen Zhang, Qiang Dong, Chushuang Chen, and Andrew Bivard
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acute ischemic stroke ,alteplase ,vessel patency status ,perfusion lesion ,CT perfusion ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background and Purpose: The benefit of thrombolysis in ischemic stroke patients without a visible vessel occlusion still requires investigation. This study tested the hypothesis that non-lacunar stroke patients with no visible vessel occlusion on baseline imaging would have a favorable outcome regardless of treatment with alteplase.Methods: We utilized a prospectively collected registry of ischemic stroke patients [the International Stroke Perfusion Imaging Registry (INSPIRE)] who had baseline computed tomographic perfusion and computed tomographic angiography. The rates of patients achieving modified Rankin Scale (mRS) 0–1 were compared between alteplase treated and untreated patients using logistic regression to generate odds ratios.Results: Of 1569 patients in the INSPIRE registry, 1,277 were eligible for inclusion. Of these, 306 (24%) had no identifiable occlusion and were eligible for alteplase, with 141 (46%) of these patients receiving thrombolysis. The treated and untreated groups had significantly different median baseline National Institutes of Health Stroke Scale (NIHSS) [alteplase 8, interquartile range (IQR) 5–10, untreated 6, IQR 4–8, P < 0.001] and median volume of baseline perfusion lesion [alteplase 5.6 mL, IQR 1.3–17.7 mL, untreated 2.6 mL, IQR 0–6.7 mL, P < 0.001]. After propensity analysis, alteplase treated patients without a vessel occlusion were less likely to have an excellent outcome (mRS 0–1; 56%) than untreated (78.8%, OR, 0.42, 95% confidence interval, 0.24–0.75, P = 0.003).Conclusions: In this non-randomized comparison, alteplase treatment in patients without an identifiable vessel occlusion did not result in higher rates of favorable outcome compared to untreated. However, treated patients displayed less favorable baseline prognostic factors than the untreated group. Further studies may be required to confirm this data.
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- 2018
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33. The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells
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Rafael D. Melani, Vincent R. Gerbasi, Lissa C. Anderson, Jacek W. Sikora, Timothy K. Toby, Josiah E. Hutton, David S. Butcher, Fernanda Negrão, Henrique S. Seckler, Kristina Srzentić, Luca Fornelli, Jeannie M. Camarillo, Richard D. LeDuc, Anthony J. Cesnik, Emma Lundberg, Joseph B. Greer, Ryan T. Fellers, Matthew T. Robey, Caroline J. DeHart, Eleonora Forte, Christopher L. Hendrickson, Susan E. Abbatiello, Paul M. Thomas, Andy I. Kokaji, Josh Levitsky, and Neil L. Kelleher
- Subjects
Proteomics ,B-Lymphocytes ,Blood Cells ,Multidisciplinary ,Proteome ,T-Lymphocytes ,Bone Marrow Cells ,Blood Proteins ,Article ,Liver Transplantation ,Alternative Splicing ,Plasma ,Leukocytes, Mononuclear ,Humans ,Protein Isoforms ,Cell Lineage ,Databases, Protein ,Protein Processing, Post-Translational - Abstract
Human biology is tightly linked to proteins, yet most measurements do not precisely determine alternatively spliced sequences or posttranslational modifications. Here, we present the primary structures of ~30,000 unique proteoforms, nearly 10 times more than in previous studies, expressed from 1690 human genes across 21 cell types and plasma from human blood and bone marrow. The results, compiled in the Blood Proteoform Atlas (BPA), indicate that proteoforms better describe protein-level biology and are more specific indicators of differentiation than their corresponding proteins, which are more broadly expressed across cell types. We demonstrate the potential for clinical application, by interrogating the BPA in the context of liver transplantation and identifying cell and proteoform signatures that distinguish normal graft function from acute rejection and other causes of graft dysfunction.
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- 2022
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34. Urban equality and the SDGs: three provocations for a relational agenda
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S Butcher
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05 social sciences ,Geography, Planning and Development ,0211 other engineering and technologies ,0507 social and economic geography ,021107 urban & regional planning ,02 engineering and technology ,Development ,050703 geography - Published
- 2022
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35. Leaving no urban citizens behind: An urban equality framework for deploying the sustainable development goals
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Alexei Trundle, S Butcher, and Michele Acuto
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Sustainable development ,2019-20 coronavirus outbreak ,Transformative learning ,Coronavirus disease 2019 (COVID-19) ,Content analysis ,Urban planning ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Political science ,Earth and Planetary Sciences (miscellaneous) ,Public administration ,General Environmental Science - Abstract
Summary Urban dwellers globally are experiencing systematic and intersectional inequalities—heightened by the COVID-19 crisis. In this regard, the UN sustainable development goals (SDGs) have a key role in guiding sustainable and equitable urban planning and development. Yet enduring contradictions across the goals, siloed approaches, or the complexities of implementation, means that SDG localization may fall short of the transformative aim to “leave no one behind.” In this perspective, we provide a practical framework for mobilizing “urban equality” through the 2030 Agenda. We present a content analysis of the intersections between “urban” and “equality” references across the 17 SDGs, and associated targets and indicators, drawing out four key areas for accelerating an urban equality agenda. This framework is presented with the aim of identifying clear opportunities for mobilizing the SDGs through an urban equality lens—and shaping further research, policy, and practice, which ensures that we “leave no urban citizens behind.”
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- 2021
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36. Prevalence and prognostic implications of discordant grading and flow-gradient patterns in moderate aortic stenosis
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J Stassen, S Ewe, G K Singh, M R Amanullah, K Hirasawa, S Butcher, K Y K Sin, Z P Ding, C H Sia, N W S Chew, W K F Kong, K K Poh, V Delgado, N A Marsan, and J J B Bax
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Cardiology and Cardiovascular Medicine - Abstract
Background The prognostic implications of discordant grading in severe aortic stenosis (AS) are well known. However, the prevalence of different flow-gradient patterns and their prognostic implications in moderate AS are unknown. Purpose To investigate the occurrence and prognostic implications of different flow-gradient patterns in patients with moderate AS. Methods Patients with moderate AS (aortic valve area 1.0–1.5 cm2) were divided in 4 groups, based on transvalvular mean gradient (MG), stroke volume index (SVi) and left ventricular ejection fraction (LVEF): concordant moderate AS (MG ≥20 mmHg); normal-flow, low-gradient discordant moderate AS (MG Results Of 1974 patients (age 73±10 years, 51% men) with moderate AS, 788 (40%) had discordant grading. Patients with discordant grading showed significantly higher mortality rates than patients with concordant grading (p Conclusion Discordant grading is frequently (40%) observed in patients with moderate AS. Low-flow, low-gradient patterns account for an important proportion of the discordant cases and are associated with increased mortality. These findings underline the need for better phenotyping patients with discordant moderate AS. Funding Acknowledgement Type of funding sources: Other. Main funding source(s): ESC Training Grant App000064741
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- 2022
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37. Epicardial adipose tissue in patients with systemic sclerosis
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X Wang, S Butcher, R Myagmardorj, S Liem, J Vries-Bouwstra, V Delgado, J Bax, and N Marsan
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Cardiology and Cardiovascular Medicine - Abstract
Background Cardiac involvement is a major cause of death in patients with systemic sclerosis (SSc). Epicardial adipose tissue (EAT) has recently emerged as a mediator between systemic inflammatory disorders and cardiovascular disease, and may therefore play a role in the pathophysiology of cardiac involvement in SSc. Purpose To assess the correlation between EAT mass and left ventricular (LV) function, and to determine the prognostic value of EAT in patients with SSc. Methods Consecutive patients with SSc who underwent non-contrast thorax computed tomography and echocardiography were included. EAT mass was quantified using dedicated software (Figure A). The study endpoint was all-cause mortality. Results A total of 230 SSc patients [age 53±15 years, 14% male] were included. The median value of EAT mass was 67g (IQR: 45–101g). Patients with increased EAT mass (≥67g) showed specifically more impaired LV diastolic function as compared to patients with less EAT mass ( Conclusion In patients with SSc, EAT mass is independently associated with LV diastolic dysfunction and higher mortality rate. Funding Acknowledgement Type of funding sources: None.
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- 2022
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38. DIFFERENTIATED CITIZENSHIP: The Everyday Politics of the Urban Poor in Kathmandu, Nepal
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S Butcher
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Urban Studies ,Economic growth ,Politics ,Sociology and Political Science ,media_common.quotation_subject ,Urban infrastructure ,Urban poor ,Sociology ,Development ,Citizenship ,Informal settlements ,media_common - Published
- 2021
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39. Diagnostic Utility of Computed Tomography Perfusion in the Telestroke Setting
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Kshitij Arora, Aaron Gaekwad, James Evans, William O’Brien, Timothy Ang, Carlos Garcia-Esperon, Christopher Blair, Leon S. Edwards, Beng L.A. Chew, Candice Delcourt, Neil J. Spratt, Mark W. Parsons, and Ken S. Butcher
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Advanced and Specialized Nursing ,Perfusion ,Stroke ,Humans ,Neurology (clinical) ,Cardiology and Cardiovascular Medicine ,Tomography, X-Ray Computed ,Brain Ischemia ,Cerebral Angiography ,Ischemic Stroke - Abstract
Background: Definitive diagnosis of acute ischemic stroke is challenging, particularly in telestroke settings. Although the prognostic utility of CT perfusion (CTP) has been questioned, its diagnostic value remains under-appreciated, especially in cases without an easily visible intracranial occlusion. We assessed the diagnostic accuracy of routine CTP in the acute telestroke setting. Methods: Acute and follow-up data collected prospectively from consecutive suspected patients with stroke assessed by a state-wide telestroke service between March 2020 and August 2021 at 12 sites in Australia were analyzed. All patients in the final analysis had been assessed with multimodal CT, including CTP, which was post-processed with automated volumetric software. Diagnostic sensitivity and specificity were calculated for multimodal CT and each individual component (noncontrast CT [NCCT], CT angiogram [CTA], and CTP). Final diagnosis determined by consensus review of follow-up imaging and clinical data was used as the reference standard. Results: During the study period, complete multimodal CT examination was obtained in 831 patients, 457 of whom were diagnosed with stroke. Diagnostic sensitivity for ischemic stroke increased by 19.5 percentage points when CTP was included with NCCT and CTA compared with NCCT and CTA alone (73.1% positive with NCCT+CTA+CTP [95% CI, 68.8–77.1] versus 53.6% positive with NCCT+CTA alone [95% CI, 48.9–58.3], P P =0.13). Multimodal CT, including CTP, demonstrated the highest negative predictive value (75.0% [95% CI, 72.1–77.7]). Patients with stroke not evident on CTP had small volume infarcts on follow-up (1.2 mL, interquartile range 0.5–2.7mL). Conclusions: Acquisition of CTP as part of a telestroke imaging protocol permits definitive diagnosis of cerebral ischemia in 1 in 5 patients with normal NCCT and CTA.
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- 2022
40. Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data
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David S Butcher, Caitlin Pavelec, Michael R. Shortreed, Leah V. Schaffer, Rachel M. Miller, Lissa C. Anderson, and Lloyd M. Smith
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Proteomics ,False discovery rate ,Biochemistry & Molecular Biology ,Computer science ,Computational biology ,top-down proteomics ,Top-down proteomics ,Biochemistry ,Mass Spectrometry ,Fourier transform ion cyclotron resonance ,Humans ,Cancer ,Fourier Analysis ,proteoform family ,A protein ,General Chemistry ,Cyclotrons ,Biological Sciences ,tesla ,proteoform ,Chemical Sciences ,High mass ,Cancer cell lines ,Human breast ,Software ,High magnetic field ,Biotechnology - Abstract
Identification of proteoforms, the different forms of a protein, is important to understand biological processes. A proteoform family is the set of different proteoforms from the same gene. We previously developed the software program Proteoform Suite, which constructs proteoform families and identifies proteoforms by intact-mass analysis. Here, we have applied this approach to top-down proteomic data acquired at the National High Magnetic Field Laboratory 21 tesla Fourier transform ion cyclotron resonance mass spectrometer (data available on the MassIVE platform with identifier MSV000085978). We explored the ability to construct proteoform families and identify proteoforms from the high mass accuracy data that this instrument provides for a complex cell lysate sample from the MCF-7 human breast cancer cell line. There were 2830 observed experimental proteforms, of which 932 were identified, 44 were ambiguous, and 1854 were unidentified. Of the 932 unique identified proteoforms, 766 were identified by top-down MS2 analysis at 1% false discovery rate (FDR) using TDPortal, and 166 were additional intact-mass identifications (∼4.7% calculated global FDR) made using Proteoform Suite. We recently published a proteoform level schema to represent ambiguity in proteoform identifications. We implemented this proteoform level classification in Proteoform Suite for intact-mass identifications, which enables users to determine the ambiguity levels and sources of ambiguity for each intact-mass proteoform identification.
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- 2020
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41. Research solidarity? Navigating feminist ethics in participatory action-research in Kathmandu, Nepal
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S Butcher
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Cultural Studies ,05 social sciences ,0211 other engineering and technologies ,0507 social and economic geography ,Participatory action research ,021107 urban & regional planning ,02 engineering and technology ,Public administration ,Feminist ethics ,Informal settlements ,Solidarity ,Gender Studies ,Arts and Humanities (miscellaneous) ,Political science ,General partnership ,Reflexivity ,Settlement (litigation) ,050703 geography ,Demography - Abstract
This article looks reflexively at the experience of PhD fieldwork—undertaken internationally, in partnership with a locally-based organization, and with informal settlement residents— which was sha...
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- 2020
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42. Risk of hemorrhagic transformation with early use of direct oral anticoagulants after acute ischemic stroke: A pooled analysis of prospective studies and randomized trials
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Anas Alrohimi, David Z Rose, W Scott Burgin, Swetha Renati, Nicholas Corbin Hilker, Wei Deng, Guilherme H Oliveira, Theresa M Beckie, Arthur J Labovitz, Michael G Fradley, Nhi Tran, Laura C Gioia, Mahesh Kate, Kelvin Ng, Dar Dowlatshahi, Thalia S Field, Shelagh B Coutts, Muzzafar Siddiqui, Michael D Hill, Jodi Miller, Glen Jickling, Ashfaq Shuaib, Brian Buck, Mike Sharma, and Ken S Butcher
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Neurology - Abstract
Introduction: Precise risk of hemorrhagic transformation (HT) in acute ischemic stroke (AIS) remains unknown, leading to delays in anticoagulation initiation for secondary stroke prevention. We sought to assess the rate of HT associated with direct oral anticoagulant (DOAC) initiation within and beyond 48 h post-AIS. Methods: A pooled analysis of DOAC initiation within 14 days of AIS or transient ischemic attack (TIA) was conducted with six studies (four prospective open label treatment, blinded outcome studies and two randomized trials; NCT02295826 and NCT02283294). The primary endpoint was incident radiographic HT on follow-up imaging (days 7–30). Secondary endpoints included symptomatic HT, new parenchymal hemorrhage, recurrent ischemic events, extracranial hemorrhage, study period mortality, and follow-up modified Rankin Scale score. The results were reported as odds ratio (OR) or hazard ratio (HR) with 95% confidence interval (CI). Results: We evaluated 509 patients; median infarct volume was 1.5 (0.1–7.8) ml, and median National Institutes of Health Stroke Scale was 2 (0–3). Incident radiographic HT was seen on follow-up scan in 34 (6.8%) patients. DOAC initiation within 48 h from index event was not associated with incident HT (adjusted OR 0.67, [0.30–1.50] P = 0.32). No patients developed symptomatic HT. Conversely, 31 (6.1%) patients developed recurrent ischemic events, 64% of which occurred within 14 days. Initiating a DOAC within 48 h of onset was associated with similar recurrent ischemic event rates compared with those in which treatment was delayed (HR: 0.42, [0.17–1.008] P = 0.052). In contrast to HT, recurrent ischemic events were associated with poor functional outcomes (OR = 6.8, [2.84–16.24], p Conclusions: In this pooled analysis, initiation of DOAC within 48 h post-stroke was not associated with increased incident risk of HT, and none developed symptomatic HT. The analysis was underpowered to determine the effect of early DOAC use upon recurrent ischemic events.
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- 2023
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43. Endovascular Thrombectomy Versus Medical Management in Isolated M2 Occlusions: Pooled Patient-Level Analysis from the EXTEND-IA Trials, INSPIRE, and SELECT Studies
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Amrou, Sarraj, Mark, Parsons, Andrew, Bivard, Ameer E, Hassan, Michael G, Abraham, Teddy, Wu, Timothy, Kleinig, Longting, Lin, Chushuang, Chen, Christopher, Levi, Qiang, Dong, Xin, Cheng, Ken S, Butcher, Philip, Choi, Nawaf, Yassi, Darshan, Shah, Gagan, Sharma, Deep, Pujara, Faris, Shaker, Spiros, Blackburn, Helen, Dewey, Vincent, Thijs, Clark W, Sitton, Geoffrey A, Donnan, Peter J, Mitchell, Bernard, Yan, James G, Grotta, Gregory W, Albers, Stephen M, Davis, and Bruce, Campbell
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Stroke ,Treatment Outcome ,Perfusion Imaging ,Endovascular Procedures ,Humans ,Prospective Studies ,Brain Ischemia ,Thrombectomy - Abstract
The objective of this study was to evaluate functional and safety outcomes of endovascular thrombectomy (EVT) versus medical management (MM) in patients with M2 occlusion and examine their association with perfusion imaging mismatch and stroke severity.In a pooled, patient-level analysis of 3 randomized controlled trials (EXTEND-IA, EXTEND-and IA-TNK parts 1 and 2) and 2 prospective nonrandomized studies (INSPIRE and SELECT), we evaluated EVT association with 90-day functional independence (modified Rankin Scale [mRS] = 0-2) in isolated M2 occlusions as compared to medical management overall and in subgroups by mismatch profile status and stroke severity.We included 517 patients (EVT = 195 and MM = 322), baseline median (interquartile range [IQR]) National Institutes of Health Stroke Scale (NIHSS) was 13 (8-19) in EVT versus 10 (6-15) in MM, p 0.001. Pretreatment ischemic core did not differ (EVT = 10 [0-24] ml vs MM = 9 [3-21] ml, p = 0.59). Compared to MM, EVT was more frequently associated with functional independence (68.3 vs 61.6%, adjusted odds ratio [aOR] = 2.42, 95% confidence interval [CI] = 1.25-4.67, p = 0.008, inverse probability of treatment weights [IPTW]-OR = 1.75, 95% CI = 1.00-3.75, p = 0.05) with a shift toward better mRS outcomes (adjusted cOR = 2.02, 95% CI:1.23-3.29, p = 0.005), and lower mortality (5 vs 10%, aOR = 0.32, 95% CI = 0.12-0.87, p = 0.025). EVT was associated with higher functional independence in patients with a perfusion mismatch profile (EVT = 70.7% vs MM = 61.3%, aOR = 2.29, 95% CI = 1.09-4.79, p = 0.029, IPTW-OR = 2.02, 1.08-3.78, p = 0.029), whereas no difference was found in those without mismatch (EVT = 43.8% vs MM = 62.7%, p = 0.17, IPTW-OR: 0.71, 95% CI = 0.18-2.78, p = 0.62). Functional independence was more frequent with EVT in patients with moderate or severe strokes, as defined by baseline NIHSS above any thresholds from 6 to 10, whereas there was no difference between groups with milder strokes below these thresholds.In patients with M2 occlusion, EVT was associated with improved clinical outcomes when compared to MM. This association was primarily observed in patients with a mismatch profile and those with higher stroke severity. ANN NEUROL 2022;91:629-639.
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- 2022
44. Quantitative susceptibility-weighted imaging in presence of strong susceptibility sources: Application to hemorrhage
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Ashmita De, Hongfu Sun, Derek J. Emery, Kenneth S. Butcher, and Alan H. Wilman
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Biomedical Engineering ,Biophysics ,Humans ,Radiology, Nuclear Medicine and imaging ,Artifacts ,Magnetic Resonance Imaging ,Cerebral Hemorrhage ,Veins - Abstract
To optimize quantitative susceptibility-weighted imaging also known as true susceptibility-weighted imaging (tSWI) for strong susceptibility sources like hemorrhage and compare to standard susceptibility-weighted imaging (SWI) and quantitative susceptibility mapping (QSM).Ten patients with known intracerebral hemorrhage (ICH) were scanned using a 3D SWI sequence. The magnitude and phase images were utilized to compute QSM, tSWI and SWI images. tSWI parameters including the upper threshold for creating susceptibility-weighted masks and the multiplication factor were optimized for hemorrhage depiction. Combined tSWI was also computed with independent optimized parameters for both veins and hemorrhagic regions. tSWI results were compared to SWI and QSM utilizing region-of-interest measurements, Pearson's correlation and Kruskal-Wallis test.Fifteen hemorrhages were found, with mean susceptibility 0.81 ± 0.37 ppm. Unlike SWI which utilizes a phase mask, tSWI uses a mask computed from QSM. In tSWI, the weighted mask required an extended upper threshold far beyond the standard level for more effective visualization of hemorrhage texture. The upper threshold was set to the mean maximum susceptibility in the hemorrhagic region (3.24 ppm) with a multiplication factor of 2. The blooming effect, seen in SWI, was observed to be larger in hemorrhages with higher susceptibility values (r = 0.78, p 0.001) with reduced blooming on tSWI. On SWI, 4 out of 15 hemorrhages showed phase wrap artifacts in the hemorrhagic region and all patients showed some phase wraps in the air-tissue interface near the auditory and frontal sinuses. These phase wrap artifacts were absent on tSWI. In hemorrhagic regions, a higher correlation was observed between the actual susceptibility values and mean gray value for tSWI (r = -0.93, p 0.001) than SWI (r = -0.87, p 0.001).In hemorrhage, tSWI minimizes both blooming effects and phase wrap artifacts observed in SWI. However, unlike SWI, tSWI requires an altered upper threshold for best hemorrhage depiction that greatly differs from the standard value. tSWI can be used as a complementary technique for visualizing hemorrhage along with SWI.
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- 2022
45. Evolution of Seismicity During a Stalled Episode of Reawakening at Cayambe Volcano, Ecuador
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Mario Ruiz, S. Butcher, Andrew Bell, and Stephen Hernandez
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volcano-tectonic interactions ,geography ,geography.geographical_feature_category ,010504 meteorology & atmospheric sciences ,Science ,Equator ,volcano-glacier interactions ,Induced seismicity ,Fault (geology) ,010502 geochemistry & geophysics ,01 natural sciences ,Tectonics ,Volcano ,Magma ,volcano-seismic swarms ,General Earth and Planetary Sciences ,Glacial period ,long-period seismicity ,Volcanic cone ,Geology ,Seismology ,0105 earth and related environmental sciences ,volcanic monitoring - Abstract
Cayambe Volcano is an ice-capped, 5,790 m high, andesitic-dacitic volcanic complex, located on the equator in the Eastern Cordillera of the Ecuadorian Andes. An eruption at Cayambe would pose considerable hazards to surrounding communities and a nationally significant agricultural industry. Although the only historically documented eruption was in 1785, it remains persistently restless and long-period (LP) seismicity has been consistently observed at the volcano for over 10 years. However, the sparse monitoring network, and complex interactions between the magmatic, hydrothermal, glacial, and tectonic systems, make unrest at Cayambe challenging to interpret. In June 2016 a seismic “crisis” began at Cayambe, as rates of high frequency volcano-tectonic (VT) earthquakes increased to hundreds of events per day, leading to speculation about the possibility of a forthcoming eruption. The crisis began 2 months after the Mw7.8 Pedernales earthquake, which occurred on the coast, 200 km from Cayambe. Here we show that the 2016 seismicity at Cayambe resulted from four distinct source processes. Cross correlation, template matching, and spectral analysis isolate two source regions for VT earthquakes–tectonic events from a regional fault system and more varied VTs from beneath the volcanic cone. The temporal evolution of the LP seismicity, and mean Q value of 9.9, indicate that these events are most likely generated by flow of hydrothermal fluids. These observations are consistent with a model where a new pulse of magma ascent initially stresses regional tectonic faults, and subsequently drives elevated VT seismicity in the edifice. We draw comparisons from models of volcano-tectonic interactions, and speculate that static stress changes from the Pedernales earthquake put Cayambe volcano in an area of dilation, providing a mechanism for magma ascent. Our findings provide a better understanding of “background” seismicity at Cayambe allowing faster characterization of future crises, and a benchmark to measure changes driven by rapid glacial retreat.
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- 2021
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46. Mobilising urban knowledge in an infodemic: Urban observatories, sustainable development and the COVID-19 crisis
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Michele Acuto, Carla-Leanne Washbourne, Ariana Dickey, and S Butcher
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Sustainable development ,Urban observatories ,Economic growth ,Infodemic ,Economics and Econometrics ,Sociology and Political Science ,050204 development studies ,05 social sciences ,Boundary spanning ,Geography, Planning and Development ,Context (language use) ,Development ,Collective memory ,Science-policy interface ,Knowledge translation ,Business economics ,Boundary-spanning ,Development studies ,Urban planning ,Political science ,0502 economics and business ,050207 economics ,Regular Research Article - Abstract
Along with disastrous health and economic implications, COVID-19 has also been an epidemic of misinformation and rumours - an 'infodemic'. The desire for robust, evidence-based policymaking in this time of disruption has been at the heart of the multilateral response to the crisis, not least in terms of supporting a continuing agenda for global sustainable development. The role of boundary-spanning knowledge institutions in this context could be pivotal, not least in cities, where much of the pandemic has struck. 'Urban observatories' have emerged as an example of such institutions; harbouring great potential to produce and share knowledge supporting sustainable and equitable processes of recovery. Building on four 'live' case studies during the crisis of institutions based in Johannesburg, Karachi, Freetown and Bangalore, our research note aims to capture the role of these institutions, and what it means to span knowledge boundaries in the current crisis. We do so with an eye towards a better understanding of their knowledge mobilisation practices in contributing towards sustainable urban development. We highlight that the crisis offers a key window for urban observatories to play a progressive and effective role for sustainable and inclusive development. However, we also underline continuing challenges in these boundary knowledge dynamics: including issues of institutional trust, inequality of voices, collective memory, and the balance between normative and advisory roles for observatories.
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- 2021
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47. Differences in obstetrical care and outcomes associated with the proportion of the obstetrician's shift completed
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Lynn M. Yee, Paula McGee, Jennifer L. Bailit, Ronald J. Wapner, Michael W. Varner, John M. Thorp, Steve N. Caritis, Mona Prasad, Alan T.N. Tita, George R. Saade, Yoram Sorokin, Dwight J. Rouse, Sean C. Blackwell, Jorge E. Tolosa, G. Mallett, W. Grobman, M. Ramos-Brinson, A. Roy, L. Stein, P. Campbell, C. Collins, N. Jackson, M. Dinsmoor, J. Senka, K. Paychek, A. Peaceman, M. Talucci, M. Zylfijaj, Z. Reid, R. Leed, J. Benson, S. Forester, C. Kitto, S. Davis, M. Falk, C. Perez, K. Hill, A. Sowles, J. Postma, S. Alexander, G. Andersen, V. Scott, V. Morby, K. Jolley, J. Miller, B. Berg, K. Dorman, J. Mitchell, E. Kaluta, K. Clark, K. Spicer, S. Timlin, K. Wilson, L. Moseley, K. Leveno, M. Santillan, J. Price, K. Buentipo, V. Bludau, T. Thomas, L. Fay, C. Melton, J. Kingsbery, R. Benezue, H. Simhan, M. Bickus, D. Fischer, T. Kamon, D. DeAngelis, B. Mercer, C. Milluzzi, W. Dalton, T. Dotson, P. McDonald, C. Brezine, A. McGrail, C. Latimer, L. Guzzo, F. Johnson, L. Gerwig, S. Fyffe, D. Loux, S. Frantz, D. Cline, S. Wylie, J. Iams, M. Wallace, A. Northen, J. Grant, C. Colquitt, D. Rouse, W. Andrews, J. Moss, A. Salazar, A. Acosta, G. Hankins, N. Hauff, L. Palmer, P. Lockhart, D. Driscoll, L. Wynn, C. Sudz, D. Dengate, C. Girard, S. Field, P. Breault, F. Smith, N. Annunziata, D. Allard, J. Silva, M. Gamage, J. Hunt, J. Tillinghast, N. Corcoran, M. Jimenez, F. Ortiz, P. Givens, B. Rech, C. Moran, M. Hutchinson, Z. Spears, C. Carreno, B. Heaps, G. Zamora, J. Seguin, M. Rincon, J. Snyder, C. Farrar, E. Lairson, C. Bonino, W. Smith, K. Beach, S. Van Dyke, S. Butcher, E. Thom, M. Rice, Y. Zhao, V. Momirova, R. Palugod, B. Reamer, M. Larsen, C. Spong, S. Tolivaisa, and J.P. VanDorsten
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Episiotomy ,Adult ,medicine.medical_specialty ,medicine.medical_treatment ,Psychological intervention ,Personnel Staffing and Scheduling ,Perineum ,Lacerations ,Article ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Obstetrics and gynaecology ,Pregnancy ,Intensive Care Units, Neonatal ,Physicians ,Medicine ,Humans ,030212 general & internal medicine ,Quality of Health Care ,030219 obstetrics & reproductive medicine ,business.industry ,Vaginal delivery ,Cesarean Section ,Obstetrics and Gynecology ,Workload ,Delivery mode ,Obstetric Labor Complications ,Obstetrics ,Logistic Models ,Emergency medicine ,Cohort ,Apgar Score ,Apgar score ,Female ,business - Abstract
Understanding and improving obstetrical quality and safety is an important goal of professional societies, and many interventions such as checklists, safety bundles, educational interventions, or other culture changes have been implemented to improve the quality of care provided to obstetrical patients. Although many factors contribute to delivery decisions, a reduced workload has addressed how provider issues such as fatigue or behaviors surrounding impending shift changes may influence the delivery mode and outcomes.The objective was to assess whether intrapartum obstetrical interventions and adverse outcomes differ based on the temporal proximity of the delivery to the attending's shift change.This was a secondary analysis from a multicenter obstetrical cohort in which all patients with cephalic, singleton gestations who attempted vaginal birth were eligible for inclusion. The primary exposure used to quantify the relationship between the proximity of the provider to their shift change and a delivery intervention was the ratio of time from the most recent attending shift change to vaginal delivery or decision for cesarean delivery to the total length of the shift. Ratios were used to represent the proportion of time completed in the shift by normalizing for varying shift lengths. A sensitivity analysis restricted to patients who were delivered by physicians working 12-hour shifts was performed. Outcomes chosen included cesarean delivery, episiotomy, third- or fourth-degree perineal laceration, 5-minute Apgar score of4, and neonatal intensive care unit admission. Chi-squared tests were used to evaluate outcomes based on the proportion of the attending's shift completed. Adjusted and unadjusted logistic models fitting a cubic spline (when indicated) were used to determine whether the frequency of outcomes throughout the shift occurred in a statistically significant, nonlinear pattern RESULTS: Of the 82,851 patients eligible for inclusion, 47,262 (57%) had ratio data available and constituted the analyzable sample. Deliveries were evenly distributed throughout shifts, with 50.6% taking place in the first half of shifts. There were no statistically significant differences in the frequency of cesarean delivery, episiotomy, third- or fourth-degree perineal lacerations, or 5-minute Apgar scores of4 based on the proportion of the shift completed. The findings were unchanged when evaluated with a cubic spline in unadjusted and adjusted logistic models. Sensitivity analyses performed on the 22.2% of patients who were delivered by a physician completing a 12-hour shift showed similar findings. There was a small increase in the frequency of neonatal intensive care unit admissions with a greater proportion of the shift completed (adjusted P=.009), but the findings did not persist in the sensitivity analysis.Clinically significant differences in obstetrical interventions and outcomes do not seem to exist based on the temporal proximity to the attending physician's shift change. Future work should attempt to directly study unit culture and provider fatigue to further investigate opportunities to improve obstetrical quality of care, and additional studies are needed to corroborate these findings in community settings.
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- 2021
48. Using boreholes as windows into groundwater ecosystems.
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James P R Sorensen, Louise Maurice, François K Edwards, Daniel J Lapworth, Daniel S Read, Debbie Allen, Andrew S Butcher, Lindsay K Newbold, Barry R Townsend, and Peter J Williams
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Medicine ,Science - Abstract
Groundwater ecosystems remain poorly understood yet may provide ecosystem services, make a unique contribution to biodiversity and contain useful bio-indicators of water quality. Little is known about ecosystem variability, the distribution of invertebrates within aquifers, or how representative boreholes are of aquifers. We addressed these issues using borehole imaging and single borehole dilution tests to identify three potential aquifer habitats (fractures, fissures or conduits) intercepted by two Chalk boreholes at different depths beneath the surface (34 to 98 m). These habitats were characterised by sampling the invertebrates, microbiology and hydrochemistry using a packer system to isolate them. Samples were taken with progressively increasing pumped volume to assess differences between borehole and aquifer communities. The study provides a new conceptual framework to infer the origin of water, invertebrates and microbes sampled from boreholes. It demonstrates that pumping 5 m(3) at 0.4-1.8 l/sec was sufficient to entrain invertebrates from five to tens of metres into the aquifer during these packer tests. Invertebrates and bacteria were more abundant in the boreholes than in the aquifer, with associated water chemistry variations indicating that boreholes act as sites of enhanced biogeochemical cycling. There was some variability in invertebrate abundance and bacterial community structure between habitats, indicating ecological heterogeneity within the aquifer. However, invertebrates were captured in all aquifer samples, and bacterial abundance, major ion chemistry and dissolved oxygen remained similar. Therefore the study demonstrates that in the Chalk, ecosystems comprising bacteria and invertebrates extend from around the water table to 70 m below it. Hydrogeological techniques provide excellent scope for tackling outstanding questions in groundwater ecology, provided an appropriate conceptual hydrogeological understanding is applied.
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- 2013
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49. Early apixaban therapy after ischemic stroke in patients with atrial fibrillation
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Anas, Alrohimi, Brian, Buck, Glen, Jickling, Ashfaq, Shuaib, Sibi, Thirunavukkarasu, and Ken S, Butcher
- Subjects
Aged, 80 and over ,Stroke ,Treatment Outcome ,Pyridones ,Atrial Fibrillation ,Anticoagulants ,Humans ,Pyrazoles ,Prospective Studies ,Aged ,Brain Ischemia ,Ischemic Stroke - Abstract
The optimal timing of anticoagulation after stroke in patients with atrial fibrillation (AF) is unknown. We aimed to objectively assess the rate of radiological hemorrhagic transformation (HT) associated with early anticoagulation.A prospective, open label study (NCT04435418) of patients with AF treated with apixaban within 14 days of ischemic stroke/TIA onset was conducted. Baseline and follow-up CT scans were assessed for HT and graded using European Cooperative Acute Stroke Study (ECASS) criteria. The primary endpoint was symptomatic HT. Incident HT rates were assessed as Objective Performance Criteria.One-hundred AF stroke patients, with a mean age of 79 ± 11 years were enrolled. Median infarct volume was 4 (0.5-10.75) ml. Median time from index event onset to apixaban initiation was 2 (1-6) days, and median baseline NIHSS was 4 (1-9). Asymptomatic HT on baseline imaging was present in 15 patients. Infarct volume (OR = 1.1, [1.02-1.12], p 0.0001) and NIHSS (OR = 1.11, [1.03-1.20], p = 0.007) were both associated with baseline HT. No patients developed symptomatic HT or systemic hemorrhage. Incident asymptomatic HT was seen on follow-up CT scan in 3 patients. Patients with incident HT were functionally independent (mRS = 0-2) at 90 days. Recurrent ischemic events occurred within 90 days in 13 patients, 4 of which were associated with severe disability (mRS 3-5) and 4 with death.Early apixaban treatment did not precipitate symptomatic HT after stroke. All HT was asymptomatic identified on imaging. Recurrent ischemic events were common and clinically symptomatic.Symptomatic HT rates are likely to be low in randomized trials of DOAC initiation post-stroke. Recurrent ischemic stroke may be the major clinical outcome. These data may be used as expected event rates when calculating sample size requirements for future safety/efficacy trials of early versus late DOAC initiation after AF-related stroke.
- Published
- 2020
50. PEPPI-MS: Polyacrylamide-Gel-Based Prefractionation for Analysis of Intact Proteoforms and Protein Complexes by Mass Spectrometry
- Author
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Philip Brownridge, Hitoshi Hasegawa, Ayako Takemori, Keisuke Shima, Jun Ishizaki, David S Butcher, Joseph A. Loo, Lissa C. Anderson, Nobuaki Takemori, Masakatsu Yamashita, Rachel R. Ogorzalek Loo, Junpei Suzuki, Daisuke Higo, Victoria M. Harman, and Robert J. Beynon
- Subjects
0301 basic medicine ,Electrophoresis ,tesla FT-ICR ,Biochemistry & Molecular Biology ,native mass spectrometry ,Polyacrylamide ,Acrylic Resins ,Bioengineering ,Proteomics ,Top-down proteomics ,Mass spectrometry ,top-down proteomics ,Biochemistry ,Article ,Mass Spectrometry ,03 medical and health sciences ,chemistry.chemical_compound ,Protein purification ,fractionation ,Polyacrylamide gel electrophoresis ,Chromatography ,Polyacrylamide Gel ,030102 biochemistry & molecular biology ,Coomassie brilliant blue ,Coomassie Brilliant Blue ,General Chemistry ,Biological Sciences ,030104 developmental biology ,chemistry ,Proteome ,Chemical Sciences ,Electrophoresis, Polyacrylamide Gel ,polyacrylamide gel electrophoresis - Abstract
Prefractionation of complex mixtures of proteins derived from biological samples is indispensable for proteome analysis via top-down mass spectrometry (MS). Polyacrylamide gel electrophoresis (PAGE), which enables high-resolution protein separation based on molecular size, is a widely used technique in biochemical experiments and has the potential to be useful in sample fractionation for top-down MS analysis. However, the lack of a means to efficiently recover the separated proteins in-gel has always been a barrier to its use in sample prefractionation. In this study, we present a novel experimental workflow, called Passively Eluting Proteins from Polyacrylamide gels as Intact species for MS ("PEPPI-MS"), which allows top-down MS of PAGE-separated proteins. The optimization of Coomassie brilliant blue staining followed by the passive extraction step in the PEPPI-MS workflow enabled the efficient recovery of proteins, separated on commercial precast gels, from a wide range of molecular weight regions in under 10 min. Two-dimensional separation combining offline PEPPI-MS with online reversed-phase liquid chromatographic separation resulted in identification of over 1000 proteoforms recovered from the target region of the gel (≤50 kDa). Given the widespread availability and relatively low cost of traditional sodium dodecyl sulfate (SDS)-PAGE equipment, the PEPPI-MS workflow will be a powerful prefractionation strategy for top-down proteomics.
- Published
- 2020
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