48 results on '"Sürücüoğlu, Süheyla"'
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2. Mycobacterium abscessus Kompleks Klinik İzolatlarının Antimikrobiyal Direnç Özellikleri.
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Sürücüoğlu, Süheyla, Özkütük, Nuri, Gazi, Hörü, and Çavuşoğlu, Cengiz
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MYCOBACTERIUM , *TIGECYCLINE , *MICROBIAL sensitivity tests , *DRUG resistance in microorganisms , *ANTI-infective agents , *AMIKACIN , *IMIPENEM , *GENETIC mutation , *MACROLIDE antibiotics , *AMINOGLYCOSIDES , *LINEZOLID , *GENETIC techniques , *MICROBIAL genetics , *GENOTYPES , *PHENOTYPES , *CEFOXITIN - Abstract
Objective: This study aimed to identify subspecies of Mycobacterium abscessus complex (MABC) isolates from clinical samples by a molecular technique and to determine mutations responsible for macrolide and aminoglycoside resistance. We also aimed to investigate the correlation of phenotypic and molecular test results by examining the resistance to antimicrobial agents according to CLSI standard using the liquid microdilution test. Methods: 27 MABC isolates from clinical samples were examined. Molecular subspecies identification and mutations responsible for aminoglycoside (rrs mutation) and macrolide resistance (rrl mutation) were determined using the GenoType NTM-DR test. The resistance phenotypes of the strains to various antimicrobial agents were investigated by the Sensititre™ RAPMYCOI AST microdilution test. Results: Of the 27 isolates tested, 21 were M. abscessus subsp. abscessus, three were M. abscessus subsp. bolletii, and three were M. abscessus subsp. massiliense; rrs and rrl mutations were not observed in any strains. Except for one isolate, all M. abscessus subsp. abscessus strains showed the erm(41) T28 genotype, which indicates inducible macrolide resistance. The correlation between the GenoType NTM-DR and phenotypic susceptibility test results was 81% (k=0.5, p=0.02) for inducible macrolide resistance and 89% for acquired macrolide resistance. The most effective antimicrobial agents were amikacin, cefoxitin, imipenem, linezolid, and tigecycline. Conclusion: Although the GenoType NTM-DR test is reliable in identifying and detecting molecular macrolide and aminoglycoside resistance, there were discrepancies in the results. We recommend confirming the results with the phenotypic susceptibility method after growth on culture. Although the M. abscessus complex is resistant to many antimicrobial agents, it has shown high sensitivity to amikacin, cefoxitin, imipenem, linezolid, and tigecycline. High levels of inducible macrolide resistance in isolates indicate the importance of subtyping and sensitivity testing of isolates in patients where culture conversion has not been achieved. [ABSTRACT FROM AUTHOR]
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- 2024
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3. In vitro Activity of Rifabutin and Clofazimine to MacrolideResistant Mycobacterium abscessus Complex Clinical Isolates
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Sürücüoğlu, Süheyla, primary, Özkütük, Nuri, additional, Gazi, Hörü, additional, and Çavuşoğlu, Cengiz, additional
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- 2023
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4. Rifabutin ve Klofaziminin Makrolidlere Dirençli Mycobacterium abscessus Kompleks Klinik İzolatlarına In vitro Etkinliği.
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SÜRÜCÜOĞLU, Süheyla, ÖZKÜTÜK, Nuri, GAZİ, Hörü, and ÇAVUŞOĞLU, Cengiz
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- 2023
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5. Recent trends in the antibiotic resistance of Helicobacter pylori in patient with dyspepsia
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Buran, Tahir, primary, Sürücüoğlu, Süheyla, additional, Kurutepe, Semra, additional, and Gazi, Hörü, additional
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- 2022
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6. Evaluation of the performance of LED fluorescent microscopy in diagnosis of tuberculosis
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ERDAL, Gizem, primary, SÜRÜCÜOĞLU, Süheyla, additional, and ÖZKÜTÜK, Nuri, additional
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- 2022
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7. Tüberküloz tanısında LED floresan mikroskopi performansının değerlendirilmesi.
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ERDAL, Gizem, SÜRÜCÜOĞLU, Süheyla, and ÖZKÜTÜK, Nuri
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TUBERCULOSIS , *FLUORESCENCE microscopy , *MYCOBACTERIUM tuberculosis , *MYCOBACTERIA , *MICROSCOPY , *CULTURE - Abstract
Objective: The aim of the study is to compare of the results of LED fluorescent microscopy (LED FM) and Ehrlich Ziehl Neelsen (EZN) staining in the examination of the respiratory specimens and to evaluate the performance of LED fluorescent microscopy with culture. Methods: In the study, the respiratory specimens obtained from patients prediagnosed with pulmonary tuberculosis were examined in the Tuberculosis Laboratory of Manisa Celal Bayar University Hafsa Sultan Hospital between February 2018 and November 2019. Two smears from each specimen processed with NALC-NaOH method were prepared and they were evaluated both EZN and LED FM by blind readers. The results of culture were used as reference for determination of the performance of LED FM. Results: In the study 1499 respiratory specimens were evaluated with LED FM. Mycobacteria were grown in the culture of 134 specimens (8.9%). The sensitivity, specificity, positive predictive value, and negative predictive value of LED FM were found as 64.2% (95% GI, 61.8%-64.4%), 96% (95%GI, 95.7%-96.3%), 61.4% and Makale Dili "Türkçe"/Article Language "Turkish" 96.5%, respectively. The sensitivity, specificity, positive and negative predictive values of EZN were also found as 51.5% (95% GI, 49%-54%), 99.9% (95% GI, 99.7%-99.9%), 97.2% and 95.4%, respectively. However, smear scarceculture negative results (54/1365) with LED FM were obtained significantly higher than the results with EZN (0/1365, p=0.000). The reason of this was thought to be due to the lack of the experience of the readers. The reading time of LED FM was 69% time saving. The consistency between the readers was found to be good (Kappa value=0.71) and it was determined that LED FM could be preferred in routine examination as a result of the survey conducted to the readers. Conclusion: The sensitivity of LED FM was found 12.7% higher than the sensitivity of EZN. However, because of the high rate of false positive results, the introduction of LED-FM should be accompanied by appropriate training of the readers. It is also thought that the use of LED FM will be cost-effective in largescale laboratories in our country. [ABSTRACT FROM AUTHOR]
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- 2022
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8. Chronic subcutaneous nodules, plaques and ulcers of the hand
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Ermertcan, Aylin, Özkütük, Nuri, Temiz, Peyker, Çavuşoğlu, Cengiz, and Sürücüoğlu, SüHeyla
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Infectious skin diseases -- Tests, problems and exercises ,Health - Abstract
Byline: Aylin. Ermertcan, Nuri. Özkütük, Peyker. Temiz, Cengiz. Çavu?o?lu, Süheyla. Sürücüo?lu A 54-year-old man presented with multiple draining sinuses on the right hand for 2 years. Dermatological examination revealed erythematous [...]
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- 2017
9. The reliability of tuberculin skin test in the diagnosis of latent tuberculosis infection in psoriasis patients: A case‐control study
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Sürücüoğlu, Süheyla, primary, Türel Ermertcan, Aylin, additional, Çetinarslan, Tubanur, additional, and Özkütük, Nuri, additional
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- 2020
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10. Evaluation of the performance of MALDI-TOF MS and DNA sequence analysis in the identification of mycobacteria species
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AKYAR, Işın, primary, ÇAVUŞOĞLU, Cengiz, additional, AYAŞ, Meltem, additional, SÜRÜCÜOĞLU, Süheyla, additional, İLKİ, Arzu, additional, KAYA, Deniz Ece, additional, and BEŞLİ, Yeşim, additional
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- 2018
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11. Immune responses elicited by the recombinant Erp, HspR, LppX, MmaA4, and OmpA proteins from Mycobacterium tuberculosis in mice
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Okay, Sezer, primary, Çetin, Rukiye, additional, Karabulut, Fatih, additional, Doğan, Cennet, additional, Sürücüoğlu, Süheyla, additional, and Kızıldoğan, Aslıhan Kurt, additional
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- 2018
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12. Seyahat ile İlişkili Tüberküloz Riski
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SÜRÜCÜOĞLU, Süheyla, primary
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- 2018
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13. Mycobacterium tuberculosis ve tüberküloz
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ERSÖZ, GÜLDEN, DURUPINAR, BELMA, ORAL, HALUK BARBAROS, KILIÇASLAN, ZEKİ, diniz, gülden, ERTURAN, ZAYRE, SÜRÜCÜOĞLU, SÜHEYLA, KOCAGÖZ, ZÜHTÜ TANIL, AKTAŞ, AYŞE ESİN, ÖZKÜTÜK, AYŞE AYDAN, DURMAZ, RIZA, ÇAVUŞOĞLU, CENGİZ, UZUN, MELTEM, ESEN, NURAN, EREN KUTSOYLU, OYA ÖZLEM, AVKAN OĞUZ, VİLDAN, musaonbaşıoğlu, seher, kısa, özgü, kizirgil, ahmet, CEYHAN, İSMAİL, ÖZYURT, MUSTAFA, ŞATANA, DİLEK, çoban, ahmet yılmaz, GAZİ, HÖRÜ, dabak, gül, saygı, atilla, ÇELİK, PINAR, şengöz, gönül, KILINÇ, OĞUZ, ANAL, ÖZDEN, ÖZKÜTÜK, NURİ, saniç, ahmet, YAKUPOĞULLARI, YUSUF, tekin, süda, sarıgüzel, nevin, yüce, ayşe, YILMAZ, ÖZGE, YÜKSEL, HASAN, aydoğan, mehmet, tozkoparan, ergun, TÜREL ERMERTCAN, AYLİN, öztürk, ferdi, ALP ÇAVUŞ, SEMA, BOZKAYA, EVRİM, ÇAMSARI, TANER, AKTAŞ, FİRDEVS, MERT, ALİ, ÖZKAN, SERİR, and erer, onur fevzi
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- 2016
14. Çok ilaca dirençli Mycobacterium tuberculosis izolatlarının hızlı tespitinde kristal viyole renksizleştirme testinin (KVTR) değerlendirilmesi: Çok merkezli bir çalışma
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SÜRÜCÜOĞLU, SÜHEYLA, ÇOBAN, AHMET YILMAZ, AKBAL, ahmet uğur, Biçmen, Can, ALBAY, ALİ, SIĞ, Ali Korhan, UZUN, MELTEM, ÖZKÜTÜK, NURİ, ESEN, NURAN, and ÖZKÜTÜK, AYŞE AYDAN
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- 2015
15. Çok ilaca dirençli Mycobacterium tuberculosis izolatlarının hızlı tespitinde nitrat redüktaz testinin değerlendirilmesi Çok merkezli bir çalışma
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SIĞ, ali korhan, ÇOBAN, AHMET YILMAZ, ÖZKÜTÜK, NURİ, KALAYCI, FATMA, Biçmen, Can, ALBAY, ALİ, UZUN, MELTEM, Taştekin, Berika, ESEN, NURAN, SÜRÜCÜOĞLU, SÜHEYLA, ÖZKÜTÜK, AYŞE AYDAN, and CEYHAN, İSMAİL
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- 2015
16. Immune responses elicited by the recombinant Erp, HspR, LppX, MmaA4, and OmpA proteins from Mycobacterium tuberculosis in mice.
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Okay, Sezer, Çetin, Rukiye, Karabulut, Fatih, Doğan, Cennet, Sürücüoğlu, Süheyla, and Kızıldoğan, Aslıhan Kurt
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MYCOBACTERIUM tuberculosis ,IMMUNE response ,HUMORAL immunity ,BCG vaccines ,MICE - Abstract
Immunogenic potency of the recombinant Erp, HspR, LppX, MmaA4, and OmpA proteins from Mycobacterium tuberculosis (MTB), formulated with Montanide ISA 720 VG adjuvant, was evaluated in BALB/c mice for the first time in this study. The five vaccine formulations, adjuvant, and BCG vaccine were subcutaneously injected into mice, and the sera were collected at days 0, 15, 30, 41, and 66. The humoral and cellular immune responses against vaccine formulations were determined by measuring serum IgG and serum interferon-gamma (IFN-γ) and interleukin-12 (IL-12) levels, respectively. All formulations significantly increased IgG levels post-vaccination. The highest increase in IFN-γ level was provided by MmaA4 formulation. The Erp, HspR, and LppX formulations were as effective as BCG in enhancement of IFN-γ level. The most efficient vaccine boosting the IL-12 level was HspR formulation, especially at day 66. Erp formulation also increased the IL-12 level more than BCG at days 15 and 30. The IL-12 level boosted by MmaA4 formulation was found to be similar to that by BCG. OmpA formulation was inefficient in enhancement of cellular immune responses. This study showed that MmaA4, HspR, and Erp proteins from MTB are successful in eliciting both humoral and cellular immune responses in mice. [ABSTRACT FROM AUTHOR]
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- 2019
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17. Second-Line Drug Susceptibilities of Multidrug-Resistant Mycobacterium tuberculosis Isolates in Aegean Region - Turkey
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ÖZKÜTÜK, Nuri, SÜRÜCÜOĞLU, Süheyla, and GAZİ, Hörü
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Mycobacterium tuberculosis,multidrug-resistant tuberculosis (MDR-TB),second-line drugs,susceptibility tests,extensively drug-resistant tuberculosis (XDR-TB) - Abstract
Aim: The emergence of multidrug-resistant tuberculosis (MDR-TB) is increasing, and the standard short-course regimen used for the treatment of TB is likely to be ineffective against MDR-TB, leading to the need for second-line drugs. In such situations, drug susceptibility testing is necessary to select an appropriate treatment regimen. Unfortunately, there are few studies showing the pattern of the second-line drug resistance in Turkey. We aimed to analyze the resistance to second-line anti-tuberculosis drugs of MDR strains of Mycobacterium tuberculosis isolated from the Aegean region of Turkey. Materials and Methods: In this study, drug susceptibility testing of 40 MDR-TB strains isolated from the Aegean region of Turkey was performed using the BACTEC 460 TB radiometric system. Capreomycin, ethionamide, kanamycin, amikacin, clofazimine and ofloxacin were tested in 1.25 µg/ml, 1.25 µg/ml, 5.0 µg/ml, 1.0 µg/ml, 0.5 µg/ml, and 2.0 µg/ml concentrations, respectively. Results: The results showed that 37.5% of the strains were resistant to ethionamide, 25% to capreomycin, 5% to kanamycin, amikacin and ofloxacin, and 2.5% to clofazimine. One (2.5%) of the 40 MDR-TB cases was defined as extensively drug-resistant tuberculosis (XDR-TB). Conclusions: The results of the study indicate that the high rates of resistance to ethionamide and capreomycin may be a problem in the treatment of patients with MDR-TB; XDR-TB is not yet a serious problem in our region.
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- 2014
18. Investigation of Bacterial Etiology with Conventional and Multiplex PCR Methods in Adult Patients with Community-Acquired Pneumonia
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KURUTEPE, SEMRA, ÖZGEN ALPAYDIN, AYLİN, SÜRÜCÜOĞLU, SÜHEYLA, Ozkan, Serir Aktogu, Celik, Pinar, Bicmen, Can, and ECEMİŞ, TALAT
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Community-acquired pneumonia (CAP) is still a serious life-threatening disease, in which the etiologic agent cannot be identified in more than 50% of patients despite advanced diagnostic methods. The most commonly used methods in the determination of CAP etiology are culture and serological tests. Since early and accurate therapy reduces the mortality in CAP cases, rapid and reliable diagnostic methods are needed. The aim of this study was to determine the bacterial etiology in adult patients with CAP by implementing multiplex polymerase chain reaction/reverse line blot hybridization (M-PCR/RLBH) assay combined with conventional methods. A total of 128 cases (94 were male; age range: 19-81 years, mean age: 58) who were admitted to our hospital and clinically diagnosed as CAP between November 2008 - November 2010, were included in the study. Respiratory samples (sputum and/or bronchoalveolar lavage) obtained from patients were searched by M-PCR/RLBH method (Gen ID (R) Autoimmun Diagnostika GmbH, Germany) in terms of the presence of Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, Mycoplasma pneumoniae, Chlamydia pneumoniae and Legionella pneumophila nucleic acids. The samples were simultaneously inoculated onto 5% sheep blood agar, chocolate agar, haemophilus isolation agar, buffered charcoal yeast extract-selective agar and EMB agar media for cultivation. Serum samples obtained from the cases were tested for IgM and IgG antibodies against C.pneumoniae by microimmunofluorescence (Focus Diagnostic, USA) and against L.pneumophila and M.pneumoniae by indirect immunofluorescence (Euroimmun, Germany) methods. The bacterial etiology was identified in 59 (46.1%) of 128 patients with CAP and a total of 73 pathogens were detected. The leading organism was S.pneumoniae (n= 32, 25%), followed by H.influenzae and M.pneumoniae (n= 9, 7%), gram-negative bacilli (n= 10, 7.8%), M.catarrhalis (n= 6, 4.7%), C.pneumoniae (n= 4, 3.2%), L.pneumophila (n= 2, 1.6%) and Staphylococcus aureus (n= 1, 1.4%). Infection with atypical pathogens were detected in 15 (11.7%), and mixed infections in 14 (10.9%) patients. The detection rate of microorganisms (S.pneumoniae, H.influenzae, M.catarrhalis, C.pneumoniae, L.pneumophilia, M.pneumoniae) searched by M-PCR/RLBH method was 41.4% (53/128), while those microorganisms were detected in 23.4% (30/128) of the patients by conventional methods, representing a significant difference (p< 0.05). It was concluded that M-PCR/RLBH method supplemented the determination of bacterial etiology in CAP cases by increasing the rate of detection from 23.4% to 41.4%. The results indicated that empirical treatment of CAP should primarily include antibiotics against S.pneumoniae, M.pneumoniae and H.influenzae in our region.
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- 2012
19. A comparison of two different fluorochrome stains for the detection of acid-fast bacilli in sputum specimens*
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Sezak, Nurbanu, AVKAN OĞUZ, VİLDAN, SÜRÜCÜOĞLU, SÜHEYLA, Yapar, Nur, Oztop, Aygun, and Yuce, Ayse
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General Medicine - Abstract
Aim: The early diagnosis of active tuberculosis still depends on the presence of acid-fast bacilli (AFB) in stained sputum smears. In this study, our aim was to investigate the efficiency and cost-effectiveness of two different fluorochrome stains.
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- 2011
20. Distribution of Nontuberculous Mycobacteria Isolated from Clinical Specimens and Identified with DNA Sequence Analysis
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ÖZÇOLPAN, O. Olcay, primary, SÜRÜCÜOĞLU, Süheyla, additional, ÖZKÜTÜK, Nuri, additional, and ÇAVUŞOĞLU, Cengiz, additional
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- 2015
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21. Diagnosis of Latent Tuberculosis Infection
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Sürücüoğlu, Süheyla, primary
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- 2015
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22. Underestimated role of alcohol at skin disinfection: lipid dissolving property when used in association with conventional antiseptic agents
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YENTÜR, Alp, TOPÇU, İsmet, IŞIK, Ruşen, DEĞERLİ, Kenan, and SÜRÜCÜOĞLU, Süheyla
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Key words: Epidural catheterization,colonization,skin disinfection,povidone-iodine,chlorhexidine,alcohol ,General Medicine - Abstract
After conventional aqueous disinfectant solutions, it was shown that microorganisms were still protected in hair follicles. We hypothesized that those aqueous disinfectant solutions when used in combination with alcohol may be more effective on the inhibition of recolonization of skin and therefore catheter tip colonization. Materials and methods: Skin surface samples were taken from epidural catheter insertion sites prior to catheterization, and before and after disinfection with different combinations of povidone-iodine, chlorhexidine, and alcohol. Before catheter removal, cultures were taken once more and tips of the catheters were cultured. Results: Catheter tip colonization and skin culture results of 10% povidone-iodine + 70% alcohol group were significantly lower than those of other groups after disinfection. Conclusion: Sequential use of alcohol and povidone-iodine is the most effective combination for limiting re-colonization of skin flora. Contamination of catheters appears to take place at removal or via the spread of these re-colonized bacteria along the catheter tract.
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- 2010
23. Frequency of bacterial contamination of toys in different environments
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Akil, İpek, Yılmaz, Özge, Egemen, Ayten, Gazi, Hörü, İkizoğlu, Tarkan, Değerli, Kenan, Sürücüoğlu, Süheyla, and Ege Üniversitesi
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Enfeksiyon Hastalıkları - Abstract
Oyuncaklar çocuğun fiziksel, motor ve psikososyal gelişimi ve erişkin bir birey olmasını sağlayan oyunun ayrılmaz parçasıdır. Çok çeşitli işlevleri olan oyuncakların sağlık sakıncası oluşturmaması gerekir. Bu çalışmanın amacı farklı ortamlarda bulunan ve kullanılan oyuncaklarda patojen mikro-organizma kolonizasyonunun araştırılmasıdır. Üç hastane, 15 kreş, 25 evdeki oyuncaklardan bulundukları yerlerde alınan toplam 285 sürüntü örneğinin bakteriyolojik ve mikolojik incelemesi yapılmış ve izole edilen bakterilerin antimikrobiyal direnç özellikleri standart disk difüzyon yöntemi ile araştırılmıştır. Kültür alınan 285 oyuncağın %31'inde üreme vardı; bu oran hastaneden alınanlarda %38.6, kreşten alınanlarda %28.7 iken evden alınanlarda %23.3 olarak saptandı. Bu yerler arasındaki üreme oranlarındaki farklılık anlamlı bulundu. Tüm kültürler içinde %33.3 ile koagülaz-negatif stafilokok ve %24.1 ile Staphylococcus aureus en sık üreyen mikroorganizmalardı. Oyuncak tiplerine göre ayrıldığında; %42.8 ile en sık tüylü oyuncaklardan alınan kültürlerde üreme saptandı; bu oranın yıkanamayan oyuncaklarda %39.7 iken yıkanabilen oyuncaklarda %28.5 olduğu görüldü. Kültür alınan tüm yerlerde üreyen mikro-organizmalarda en yüksek direnç oranı %90-100 ile penisiline karşıyken en az direnç oranı ise vankomisin ve teikoplanine karşıydı. Bu oranlar göz önüne alındığında, oyuncaklarda patojen mikro-organizma saptanabileceği ve bunların hastalardan tekrar tekrar infekte olarak hasta bir çocuktan diğerine İnfeksiyon taşıyıcısı potansiyeli olabileceği görülür. Oyuncakların bu İnfeksiyon zincirindeki yeri ve günümüzde hastane infeksiyonlarmın önemi akılda tutularak hasta ya da çok sayıda çocuk tarafından kullanılan oyuncaklar açısından özel çözümler getirilmelidir., Play that is essential for physical, motor, and psychosocial development of child to become an adult requires toys as an innate tool. Toys should not be hazardous to health. the aim of this study was to search for colonisation of pathogenic microorganisms on toys in different environments. Microbial growth and antibiotic resistance in 285 cultures taken from toys used in 3 hospitals, 15 daycare centers and 25 houses were evaluated. Growth was detected in 31.6% of cultures; this rate was 39.1% in hospital toys, 26.3% in daycare center toys while 27.6 % in house toys. the difference among these values was statistically meaningful. the most common microorganisms detected were coagulase-negative staphylococci with 33.3% and Staphylococcus aureus with 24.1%. When growth was compared among different kinds of toys, it was most commonly detected in cultures taken from furry toys with 42.8%; this rate was 28.5% in washable while 39.7% in nonwashable toys. Highest resistance was against penicillin with a ratio of 90-100% while it was lowest against vancomycine and teichoplanin. It is concluded that pathogenic microorganisms can be found on toys and these toys can be infected again and again from ill children carrying the potential to transmit this infection to others. Keeping in mind the importance of nosocomial infections in today's world and the place of toys in this chain of infectious transmission, special care should be given to toys shared by many children.
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- 2004
24. Evaluation of the Xpert MTB/RIF Assay for the Diagnosis of Pulmonary and Extrapulmonary Tuberculosis in an Intermediate-Prevalence Setting
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ÖZKÜTÜK, Nuri, primary and SÜRÜCÜOĞLU, Süheyla, additional
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- 2014
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25. A comparison of two different fluorochrome stains for the detection of acid-fast bacilli in sputum specimens*
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OĞUZ, VİLDAN AVKAN, primary, SEZAK, NURBANU, primary, ÖZTOP, AYGÜN, primary, YAPAR, NUR, primary, SÜRÜCÜOĞLU, SÜHEYLA, primary, and YÜCE, AYŞE, primary
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- 2011
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26. Significance of Fluorescent In-Situ Hybridization ethod in Rapid Diagnosis of Brucellosis
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GAZİ, Hörü, primary, YURTSEVER, Süreyya Gül, additional, SÜRÜCÜOĞLU, Süheyla, additional, EL, Sibel, additional, and ERTURAL, Pınar, additional
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- 2011
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27. Comparison of Löwenstein Jensen Medium and Bactec 460TB Culture System for Diagnosis of Tuberculosis
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BAŞKESEN, Tolga, primary, SÜRÜCÜOĞLU, Süheyla, additional, ÖZKÜTÜK, Nuri, additional, and ECEMİŞ, Talat, additional
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- 2010
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28. Klinik Örneklerden Soyutlanan ve DNA Dizi Analizi ile Tanımlanan Tüberküloz Dışı Mikobakterilerin Dağılımı.
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ÖZÇOLPAN, O. Olcay, SÜRÜCÜOĞLU, Süheyla, ÖZKÜTÜK, Nuri, and ÇAVUŞOĞLU, Cengiz
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- 2015
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29. Levels of Cytokines Indicative of T Cell Response in Bronchoalveolar Lavage of Tuberculin Skin Test-Positive Children.
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Yüksel, Hasan, Yılmaz, Özge, Onur, Ece, Sürücüoğlu, Süheyla, Erdin, Soner, and Kırmaz, Cengiz
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TUBERCULOSIS diagnosis ,BRONCHOALVEOLAR lavage ,BRONCHOSCOPY ,CHI-squared test ,CYTOKINES ,ENZYME-linked immunosorbent assay ,GROWTH factors ,INTERFERONS ,INTERLEUKINS ,T cells ,TUBERCULIN test ,TUBERCULOSIS ,VIDEO recording ,CASE-control method ,DATA analysis software ,DESCRIPTIVE statistics ,MANN Whitney U Test ,CHILDREN - Abstract
OBJECTIVES: The aim of the study was to evaluate the levels of interleukin (IL)-4, IL-10, transforming growth factor-beta (TGF-β), IL-1 7, and IL-23 cytokines, which reflect different T lymphocyte responses, in bronchoalveolar lavage (BAL) samples of tuberculin skin test (TST)-positive children. MATERIAL AND METHODS: Twelve children with TST positivity, who underwent flexible videobronchoscopy (FB) to evaluate airway involvement and to obtain BAL to improve diagnostic yield, and 11 control children with negative TST, who underwent FB for other reasons, were enrolled in this case-control study. BAL samples were obtained from all children during the FB procedure. Levels of IL-4, interferon gamma (IFN-γ), IL-10, TGF-β, IL-1 7, and IL-23 were measured by the ELISA method. RESULTS: Mean age of the children enrolled in the TST-positive and -negative groups were 8.6 (4.3) vs. 6.8 (4.5), respectively (p=0.35). There was a trend of higher TGF-β levels in TST-positive children compared with TST-negative children [557.9 (515.3) vs. 386.3 (208.1), respectively, p=0.07]. Mean levels of IL-23 were 39.2 (29.5) in TST-positive children vs. 46.2 (72.3) in TST-negative children (p=0.49). IFN-γ, IL-4, IL-10, and IL-1 7 levels were not significantly different among the groups (p>0.05 for all). CONCLUSION: Results of this study suggest that TGF-β in BAL fluid of children with TST positivity tends to be higher than that in TST-negative children, which indicates an increased activity of regulatory T lymphocytes that may decrease the Th1 immune response. TGF-γ might be studied in future research for its potential as a diagnostic modality and immunomodulatory treatment target. [ABSTRACT FROM AUTHOR]
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- 2014
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30. Orta Prevalanslı Bölgede Akciğer ve Akciğer Dışı Tüberküloz Tanısında Xpert MTB/RIF Testinin Değerlendirilmesi.
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ÖZKÜTÜK, Nuri and SÜRÜCÜOĞLU, Süheyla
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- 2014
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31. Toplum Kökenli Pnömonisi Olan Erişkin Hastalarda Konvansiyonel ve Multipleks PCR Yöntemleriyle Bakteriyel Etiyolojinin Araştırılması.
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KURUTEPE, Semra, ECEMİŞ, Talat, ÖZGEN, Aylin, BİÇMEN, Can, ÇELİK, Pınar, ÖZKAN, Serir AKTOĞU, and SÜRÜCÜOĞLU, Süheyla
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- 2012
32. Molecular Diversity of Drug Resistant Mycobacterium Tuberculosis Strains in Western Turkey.
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Sürücüoğlu, Süheyla, Günal, Selami, Özkütük, Nuri, Biçmen, Can, Özsöz, Ayşe, Gazi, Hörü, and Durmaz, Rıza
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- *
TUBERCULOSIS microbiology , *DRUG resistance , *GENES , *MYCOBACTERIAL diseases - Abstract
Objective: The aim of this study was to investigate the molecular diversity and clonal relationship of drug resistant Mycobacterium tuberculosis strains isolated in Western Turkey. Materials and Methods: A total of 87 strains isolated between 2006 and 2009, eight of which were rifampicin monoresistant and 79 were multidrug resistant, were analyzed with IS6110 RFLP and spoligotyping methods. Results: The results of spoligotyping showed that 7% of the strains were orphans, and 8% were undefined for family in the SpolDB4 database. Major families of the strains were LAM (38%), T (35%), Haarlem (7%), Beijing (2%), S (2%) and U (1%) families. The clustering rate by spoligotyping was calculated as 75%. The most predominant SIT cluster was SIT41 (29%). According to the results of IS6110 RFLP, 71 different patterns of IS6110 were observed. Low copy number was found in 26% of the strains. When the results of two methods were combined, the final clustering rate was calculated as 26%. Conclusions: The genotypical distribution of drug resistant tuberculosis isolates in our region indicates genetic diversity and the clustering rate was found low in our region. However, more comprehensive and long-term molecular epidemiological studies are needed to control the drug resistant strains. [ABSTRACT FROM AUTHOR]
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- 2012
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33. Riskli hastalarda metisiline dirençli Staphylococcus aureus taşıyıcılığının belirlenmesinde hızlı tanı testlerinin değerlendirilmesi.
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SüRüCüoğlu, Süheyla, Sakarya, Melek, Gazİ, Hörü, EcemİŞ, Talat, and Kurutepe, Semra
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- 2011
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34. Antimicrobial Resistance of Gram-Negative Bacteria Isolated from Lower Respiratory Tract Specimens of Hospitalized Patients.
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Gazi, Hörü, Ecemiş, Talat, Kurutepe, Semra, Gürsev, Nuray, and Sürücüoğlu, Süheyla
- Abstract
Copyright of Klimik Journal / Klimik Dergisi is the property of DOC Design & Informatics Co. Ltd and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2011
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35. Hastanede Yatan Hastaların Alt Solunum Yolu Örneklerinden İzole Edilen Gram-Negatif Bakterilerde Antimikrobiyal Direnç.
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Gazi, Hörü, Ecemiş, Talat, Kurutepe, Semra, Gürsev, Nuray, and Sürücüoğlu, Süheyla
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GRAM-negative bacteria ,ANTI-infective agents ,ANTIBIOTICS ,RESPIRATORY infections ,CARBAPENEMS ,ENTEROBACTERIACEAE ,RESPIRATORY organ microbiology ,DRUG resistance ,RETROSPECTIVE studies - Abstract
Copyright of Klimik Journal / Klimik Dergisi is the property of DOC Design & Informatics Co. Ltd and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2011
- Full Text
- View/download PDF
36. Second-Line Drug Susceptibilities of Multidrug-Resistant Mycobacterium tuberculosis Isolates in Aegean Region - Turkey.
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Özkütük, Nuri, Sürücüoğlu, Süheyla, Gazı, Hörü, Coşkun, Meral, Özkütük, Aydan, and Özbakkaloğlu, Beril
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- *
MULTIDRUG resistance , *MYCOBACTERIUM tuberculosis , *DRUG resistance in microorganisms , *MYCOBACTERIAL diseases - Abstract
Aim: The emergence of multidrug-resistant tuberculosis (MDR-TB) is increasing, and the standard short-course regimen used for the treatment of TB is likely to be ineffective against MDR-TB, leading to the need for second-line drugs. In such situations, drug susceptibility testing is necessary to select an appropriate treatment regimen. Unfortunately, there are few studies showing the pattern of the second-line drug resistance in Turkey. We aimed to analyze the resistance to second-line anti-tuberculosis drugs of MDR strains of Mycobacterium tuberculosis isolated from the Aegean region of Turkey. Materials and Methods: In this study, drug susceptibility testing of 40 MDR-TB strains isolated from the Aegean region of Turkey was performed using the BACTEC 460 TB radiometric system. Capreomycin, ethionamide, kanamycin, amikacin, clofazimine and ofloxacin were tested in 1.25 μg/ml, 1.25 μg/ml, 5.0 μg/ml, 1.0 μg/ml, 0.5 μg/ml, and 2.0 μg/ml concentrations, respectively. Results: The results showed that 37.5% of the strains were resistant to ethionamide, 25% to capreomycin, 5% to kanamycin, amikacin and ofloxacin, and 2.5% to clofazimine. One (2.5%) of the 40 MDR-TB cases was defined as extensively drug-resistant tuberculosis (XDR-TB). Conclusions: The results of the study indicate that the high rates of resistance to ethionamide and capreomycin may be a problem in the treatment of patients with MDR-TB; XDR-TB is not yet a serious problem in our region. [ABSTRACT FROM AUTHOR]
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- 2008
37. Recent trends in the antibiotic resistance of Helicobacter pyloriin patient with dyspepsia
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Buran, Tahir, Sürücüoğlu, Süheyla, Kurutepe, Semra, and Gazi, Hörü
- Abstract
The aim of this study was to determine the resistance status and to identify the point mutations conferring resistance to clarithromycin and fluoroquinolones among dyspeptic patients in Manisa, Turkey.The study included a sample of 140 patients with an indication for upper gastrointestinal endoscopy randomly selected from 2100 dyspeptic patients attending to the Gastroenterology and Endoscopy Unit at Manisa Celal Bayar University Hafsa Sultan Hospital between April 2016 and May 2018. A commercially available GenoType Helico DR test was used to detect the presence of Helicobacter pyloriand mutations associated with resistance to clarithromycin and fluoroquinolones in biopsy specimens.In total, 116 (82.9%) of 140 biopsies obtained from the same number of dyspeptic patients were positive for H pyloriand 82 (approximately 71%) of them harbored resistance mutations in 23SrRNA and/or gyrA. Resistance to clarithromycin, levofloxacin, or both were detected in 43.1% (50/116), 27.6% (32/116), and 16/116 (13.8%) of tested biopsies, respectively. The most common mutation conferring resistance to clarithromycin was A2147G (96%, 48/50). Resistance to fluoroquinolones was frequently due to mutation in codon 91 and the most common mutation detected was D91G (34.4%). Heteroresistance patterns were observed in 48.0% (24/50) of clarithromycin-resistant samples and 28.1% (9/32) of levofloxacin-resistant samples.The resistance rates and detected mutations in this study are in line with the country data. However, to achieve better H pylorieradication and to prevent the spread of multidrug-resistant strains in Turkey, the molecular-based susceptibility tests should be considered routinely. Further studies are needed to determine the various mutations among resistant strains.
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- 2022
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38. Tüberküloz tanısında led floresan mikroskopinin performansının değerlendirilmesi
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Adisanli, Gizem, Sürücüoğlu, Süheyla, and Tıbbi Mikrobiyoloji Anabilim Dalı
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Mikrobiyoloji ,Microbiology - Abstract
Amaç: Projenin amacı akciğer tüberkülozu kuşkusu olan hastaların solunum yolu örneklerinin mikroskobik incelemesinde LED floresan mikroskopi (LED FM) ile Erlich Ziehl Nelseen (EZN) boyama yöntemini karşılaştırmak ve kültür sonuçları referans alınarak LED FM'nin performansını araştırmaktır.Gereç ve Yöntem: Araştırmada Şubat 2018-Aralık 2019 döneminde Manisa Celal Bayar Üniversitesi Hafsa Sultan Hastanesi Tüberküloz Laboratuvarında akciğer tüberkülozu ön tanılı hastalardan alınan solunum yolu örnekleri incelenmiştir. NALC-NaOH yöntemi ile işlenen örneklerden ikişer yayma hazırlanmış ve yaymalar iki okuyucu tarafından kör olarak hem EZN hem de LED FM ile incelenmiştir. Performans değerlendirmesinde kültür sonuçları referans alınmıştır.Bulgular: Araştırmada 1499 solunum yolu örneği değerlendirilmiştir. Örneklerin 134'ünün (%8.9) kültüründe mikobakteri üremiştir. Kültür sonuçları referans alındığında LED FM'nin duyarlılığı %64,2, özgüllüğü %96, pozitif prediktif değeri %61.4 ve negatif prediktif değeri %96.5 bulunmuştur. EZN yönteminin duyarlılığı ise %51.5, özgüllüğü %99.9, pozitif prediktif değeri %97.2 ve negatif prediktif değeri %95.4'dir. Ancak LED FM'de yayma şüpheli, kültür negatif (54/1365) sonuçlar EZN'den (0/1365) anlamlı olarak yüksek bulunmuştur. Bunun nedeninin okuyucuların deneyim eksikliğine bağlı olduğu düşünülmüştür. LED FM inceleme süresi %69 zaman tasarrufu sağlanmıştır. LED floresan mikroskopların maliyetleri yüksek olmakla birlikte florokrom boyama maliyeti EZN boyama yönteminden ucuz bulunmuştur. Okuyucular arasındaki uyum iyi derecede bulunmuş ve okuyuculara yapılan anket sonucu rutin incelemede LED FM tercih edilebileceği belirlenmiştir. Sonuç: LED FM'nin duyarlılığı EZN'den %12.7 daha yüksek bulunmuştur. Ancak yanlış pozitif sonuç oranının yüksek olması nedeni ile LED FM'nin okuyuculara gerekli eğitim verildikten sonra kullanıma girmesi gereklidir. LED FM'nin ülkemizde büyük ölçekli laboratuvarlarda kullanılmasının maliyet etkin olacağı düşünülmüştür. Aim: The aim of the Project is to compare of the results of LED fluorescent microscopy (LED FM) and Erlich Ziehl Nelseen (EZN) staining in the examination of the respiratory specimens and to evaluate the performance of LED fluorescent microscopy with culture. Materials and Methods: In the study, the respiratory specimens obtained from patients prediagnosed with pulmonary tuberculosis were examined in the Tuberculosis Laboratory of Manisa Celal Bayar University Hafsa Sultan Hospital between February 2018 and November 2019. Two smears from each specimen processed with NALC-NaOH method were prepared and they were evaluated both EZN and LED FM by blind readers. The results of culture were used as reference for determination of the performance of LED FM.Results: In the study 1499 respiratory specimens were evaluated with LED FM. Mycobacteria were grown in the culture of 134 specimens (8.9%). When the culture was accepted as reference method, the sensitivity, specificity, positive predictive value and negative predictive value of LED FM were found as 64.2%, 96%, 61.4% and 96.5%, respectively. However scarce positive-culture negative results (54/1365) with LED FM were obtained significantly higher than the results with EZN (0/1365). The reason of this was thought to be due to the lack of the experience of the readers. The reading time of LED FM was 69% time saving. While the costs of LED fluorescent microscopes are high, the cost of fluorescent stains found to be cheaper than the EZN staining method. The consistency between the readers was found to be good and it was determined that LED FM could be preferred in routine examination as a result of the survey conducted to the readers.Conclusions: The sensitivity of LED FM was found 12.7% higher than the sensitivity of EZN. However, because of the high rate of false positive results, the introduction of LED-FM should be accompanied by appropriate training of the readers. It is also thought that the use of LED FM will be cost-effective in large-scale laboratories in our country. 73
- Published
- 2020
39. Çeşitli klinik örneklerden soyutlanan tüberküloz dışı mikobakterilerin DNA dizi analizi ile identifikasyonu
- Author
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Özçolpan, O. Olcay, Sürücüoğlu, Süheyla, and Tıbbi Mikrobiyoloji Ana Bilim Dalı
- Subjects
Identification ,Mikrobiyoloji ,Epidemiology ,DNA ,DNA analysis ,Microbiology ,Mycobacterium - Abstract
Çalışmanın amacı Celal Bayar Üniversitesi Mikobakteriyoloji Laboratuvarı?nda çeşitli klinik örneklerden soyutlanan Tüberküloz Dışı Mikobakterilerin (TDM) hsp65 ve 16S rDNA gen bölgeleri hedef alınarak altın standart yöntem olan DNA dizi analizi ile identifikasyonunun yapılması ve elde edilen verilerin epidemiyolojik yönden tartışılmasıdır.2007-2011 yılları arasında tüberküloz ön tanısı ile gönderilen 5122 örneğin 126?sında (%2.46) TDM üretilmiş ve bu suşlardan 101?i DNA dizi analizi ile çalışılmıştır. DNA dizi analizi sonuçları RIDOM ve GenBLAST veri tabanları kullanılarak değerlendirilmiş ve sıklık sırası ile M. porcinum (%39.60), M. lentiflavum (%35.64), M. abscessus (%5.64), M. peregrinum (%4.95), M. gordonae (%3.96), M. fortuitum (%2.97), M. chelonae (%1.98), M. alvei (%0.99), M. scrofulaceum (%0.99) ve M. kansasii-M. gastri (%0.99) türleri tanımlanmıştır. İki suş ise veri tabanlarındaki diğer mikobakterilerle %95-98 arasında uyumlu bulunmuş olup, kesin olarak tanımlanamamıştır. Çalışılan 98 suşun etken olduğu kanıtlanamamış, üç M. abscessus suşu ise etken olarak kabul edilmiştir. Sonuç olarak 16S rDNA dizi analizi ile birlikte hsp65 gen bölgesi de analiz edilerek 101 TDM suşunun 99?u başarı ile tanımlanmıştır. Laboratuvarımızda en sık olarak tespit edilen TDM tür dağılımı ülkemizin değişik bölgelerinden bildirilen çalışmalara göre kısmen farklılık göstermektedir. Çalışmamızda en sık izole edilen iki tür olan M. lentiflavum ve M. porcinum?un antibiyotiklere direnç göstermesi ve insan infeksiyonları ile ilişkili olduklarının bilinmesi nedeni ile dikkate alınmaları gerekmektedir. TDM?lerin etken veya kontaminant oldukları ayırt edilememesi kısıtlayıcı olmakla birlikte, çevresel mikobakterilerin hastane infeksiyonlarına yol açabildiği bilindiğinden, elde edilen verilerin bölgemizdeki TDM infeksiyonlarının epidemiyolojisine ait bilgilere katkı sağlayacağı düşünülmüştür. Anahtar kelimeler: Tüberküloz Dışı Mikobakteri, identifikasyon, DNA dizi analizi, epidemiyoloji The aim of the study was to perform identification of non-tuberculous mycobacteria (NTM) isolated from different clinical specimens in the Mycobacteriology Laboratory of Celal Bayar University by using the DNA sequence analysis, which remains the gold standard method, and by targeting hsp65 and 16S rDNA gene regions, and also discuss the epidemiological aspects of the data obtained.Out of 5122 clinical specimens that have been sent to the laboratory with the initial diagnosis of tuberculosis in the period 2007-2011, NTM was identified in 126 (2.46%), and DNA sequence analysis was performed on 101 of these strains. DNA sequence analysis data was evaluated using RIDOM and GenBLAST data bases and consequently, M. porcinum (39.60%), M. lentiflavum (35.64%), M. abscessus (5.64%), M. peregrinum (4.95%), M. gordonae (3.96%), M. fortuitum (2.97%), M. chelonae (1.98%), M. alvei (0.99%), M. scrofulaceum (0.99%) and M kansasii-M. gastritis (0.99%) species were characterized, respectively. Another two strains could not be identified with certainty, although they were both 95-98% compatible with other mycobacteria in the data bases. The other 98 strains examined could not be proven as a cause of the disease, whereas three M. abscessus strains were considered as the cause of the disease.As a result, 99 of 101 NTM strains were successfully identified with the hsp65 gene sequence analysis in addition to 16S rDNA analysis. Distribution of most common NTM strains identified in our laboratory was slightly different according to the regions of our country. The two species most frequently isolated in our study were M. lentiflavum and M. porcinum and should be seriously considered due to their known correlation with human infections and antibiotic resistance. The isolated NTM strains could not be distinguished as the cause of the disease or a contaminant, which is the limiting factor in this study. However, considering the environmental mycobacteria may lead to hospital infections, the data obtained in this study can contribute to epidemiological data pool of NTM infections.Key words: Non-tuberculous mycobacteria, identification, DNA sequence analysis, epidemiology 78
- Published
- 2013
40. Temaslılarda tüberküloz enfeksiyonunun tanısında tüberkülin deri testi ile kanda spesifik interferon gama yanıtının karşılaştırılması
- Author
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Öztürk, Neşe, Sürücüoğlu, Süheyla, and Mikrobiyoloji ve Klinik Mikrobiyoloji Ana Bilim Dalı
- Subjects
Mikrobiyoloji ,Microbiology - Abstract
Latent Mycobacterium tuberculosis enfeksiyonunun tanısı için kullanılan tüberkülinderi testinin birçok dezavantajı olması nedeni ile son yıllarda yeni bir yöntem gelistirilmistir(QuantiFERON-TB Gold testi). Bu test M. tuberculosis'e özgü ESAT-6 ve CFP-10antijenlerinin uyarısı ile tam kanda interferon gama üretimini ölçmektedir. Bu çalısmanınamacı latent tüberküloz enfeksiyonu tanısı için tüberkülin deri testi ile tam kan IFN-gamatestini karsılastırmaktır. Testler 3 farklı risk grubunda olan toplam 233 hasta üzerindedegerlendirilmistir; Grup 1 yayma pozitif indeks olgu ile temas eden aile içi temaslılardan(133), Grup 2 yayma pozitif indeks olgu ile temas eden aile dısı temaslılardan (46) ve Grup 3saglık personelinden (74) olusmaktadır. Çalısılan olgularda toplam olarak tüberkülin deri testi%37, IFN-gama testi ise %42 pozitif sonuç vermistir. Olgu grupları arasında tüberkülin deritesti pozitifligi yönünden önemli bir fark saptanmamıstır. Ancak IFN-gama kan testipozitifligi aile içi temaslılarda diger iki gruptan daha yüksek (%51.3, p=0.013) bulunmustur.Çalısmada degerlendirilen risk gruplarında, iki yöntem arasında zayıf ölçüde uyumsaptanmıstır (%65.7, kappa degeri: 0.28). Asısız olgularda ise iki test arasındaki uyum ortaderecede bulunmustur (%72.7, kappa degeri: 0.44). Asısız olgularda testler arasındaki negatifuyum (%44), pozitif uyumdan (%28.7) daha yüksektir. Çalısmadan elde edilen sonuçlar,asılama programı rutin olarak uygulanmakta olan ülkemizde latent tüberküloz enfeksiyonutanısında ESAT-6 ve CFP-10 antijenlerine dayalı IFN-gama kan testinin sınırlı degerdeoldugunu göstermektedir. M. tuberculosis'e spesifik antijenlerin kullanıldıgı yeni testleringüvenilirligini belirlemek için daha ileri çalısmalara gereksinim vardır.Anahtar kelimeler: Mycobacterium tuberculosis, enfeksiyon, tanı, interferon gama The tuberculin skin test used to detect latent Mycobacterium tuberculosis infectionhas many drawbacks, and a new diagnostic test for latent tuberculosis (QuantiFERON-TBGold assay) has recently been introduced. This test measures the production of interferongamma in whole blood upon stimulation with ESAT-6 and CFP-10 which are specificantigens for M. tuberculosis. The aim of the study is to compare the tuberculin skin testand the new method, whole blood IFN-gamma assay in the tuberculosis contacts for thediagnosis of latent tuberculosis infection. The assays were evaluated in 233 individualsfrom three risk groups: Group 1, 133 household contacts of smear positive index cases;Group 2, 46 tuberculosis contacts of the community of smear positive index cases; andGroup 3, 74 health care workers. The rates of positive results of the tuberculin skin test andIFN-gamma assay in the cases were 37% and 42%, respectively. There was no significantdifference in results of the tuberculin skin test among the three patient groups. But thepositive result (51.3%, p=0.013) of the IFN-gamma assay in Group 1 was higher than theother groups. A poor agreement between the two tests was found in our risk groups(65.7%, kappa value: 0.28). Agreement between the tests was moderate in unvaccinatedpeople (72.7%, kappa value: 0.44). Negative agreement was higher than the positiveagreement (44.0% versus 28.7%) in unvaccinated people. Our results demonstrate that theIFN-gamma assay based on ESAT-6 and CFP-antigens has limited value for diagnosis oflatent tuberculosis infection in our country where BCG vaccination programme is routine.Further studies could address improvement of the reliability of new tests with M.tuberculosis specific antigens.Key words: Mycobacterium tuberculosis, infection, diagnosis, interferon gamma 55
- Published
- 2006
41. Erişkin astımlı hastalarda kronik chlamydia pneumoniae infeksiyonunun araştırılması
- Author
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Ecemiş, Talat, Sürücüoğlu, Süheyla, and Mikrobiyoloji ve Klinik Mikrobiyoloji Ana Bilim Dalı
- Subjects
Mikrobiyoloji ,Microbiology - Abstract
IV ÖZET Chlamydia pneumoniae, başta toplum kökenli pnömoniler olmak üzere çeşitli alt ve üst solunum yolu hastalıklarına neden olan zorunlu hücre içi patojenidir. Son yıllarda yapılan çalışmalar, çocuklarda ve erişkinlerde, C. pneumoniae 'nın astımın alevlenmesinde ve ilerlemesinde rol oynadığı ve kronik infeksiyonların astım ile ilişkili olduğu yönündedir. Bu araştırmanın amacı erişkin yaştaki stabil kronik astımlı hastalarda, kronik C. pneumoniae infeksiyonunun araştırılması ve astım ile kronik klamidya infeksiyonu arasındaki ilişkinin incelenmesidir. Bu amaçla Celal Bayar Üniversitesi Tıp Fakültesi Hastanesi Göğüs Hastalıkları Polikliniği'ne kayıtlı olan 72 erişkin, stabil kronik astım hastasında ve 20 sağlıklı erişkin kontrol bireyinde, enzim immunoassay testi ile serumda C. pneumoniae'ya karşı oluşmuş IgG ve IgA antikorları ve nazofarinks sürüntüsünde direkt flöresan antikor testi ile C. pneumoniae antijeni aranmıştır. Çalışma sonucunda, IgA pozitifliği beş hastada (%6.9) ve bir kontrolde (%5), IgG pozitifliği altmış sekiz hastada (%94.4) ve on beş kontrolde (%75), direkt flöresan antikor testi pozitifliği ise beş hastada (%6.9) ve bir kontrolde (%5) saptanmıştır. Tüm hasta gruplarıyla kontrol grupları arasında istatistiksel olarak anlamlı bir ilişki bulunmazken, IgA antikoru ve C. pneumoniae antijeni yönünden ağır persistan hastalar ile diğer grup hastalar arasında anlamlı bir fark saptanmıştır. Hastalarda antijen ve spesifik IgA antikor pozitifliği arasında %67'lik bir uyum belirlenmiştir. Sonuç olarak kronik C. pneumoniae infeksiyonlarının erişkinlerde mevcut astım hastalığının şiddetini artırabileceği düşünülmüştür. Anahtar kelimeler: Chlamydia pneumoniae, Astım, IgG, IgA, kronik infeksiyon. SUMMARY Chlamydia pneumoniae is an obligate intracellular pathogen that cause various upper and lower respiratory tract illnesses mainly community acquired pneumonia. The studies conducted in recent years have suggested that C. pneumoniae plays an important role in the exacerbations and progress for asthma in children and adults and chronic infections are implied to be associated with asthma. The aim of this study was to investigate the chronic C. pneumoniae infection in adult patients with chronic stabile asthma and to determine the relationship between asthma and chronic Chlamydia infection. For this reason, the presence of IgG and IgA antibodies against C. pneumoniae in sera by enzyme immunoassay testing and C. pneumoniae antigens in nasopharyngeal smear by direct fluorescent antibody testing were detected in 72 adult outpatiens with chronic stabile asthma enrolled at Pulmonary Diseases Department of Medicine Faculty of Celal Bayar University and 20 healty control subjects. At the end of the study, IgA positivity in five patients (6.9%) and in one control (5%); IgG positivity in sixty eight patients (94.4%) and fifteen controls (75%); direct fluorescent antibody testing positivity in five patients (6.9%) and in one control (5%) were found. Although there was no significant statistical association between the whole patient categories and the control subjects, a significant difference was determined considering IgA antibodies and C. pneumoniae antigens in severe persistant patients and other category patients. There was a 67% agreement of antigen and spesific IgA antibody positivity in patients. It was concluded that the presence of chronic C. pneumoniae infections may increase the severity of asthma in adults. Key words: Chlamydia pneumoniae, Asthma, IgG, IgA, Chronic infection. 1051
- Published
- 2002
42. [In vitro Activity of Rifabutin and Clofazimine to Macrolide-Resistant Mycobacterium abscessus Complex Clinical Isolates].
- Author
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Sürücüoğlu S, Özkütük N, Gazi H, and Çavuşoğlu C
- Subjects
- Humans, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Macrolides pharmacology, Macrolides therapeutic use, Rifabutin pharmacology, Rifabutin therapeutic use, Clofazimine pharmacology, Clofazimine therapeutic use, Clarithromycin pharmacology, Clarithromycin therapeutic use, Drug Resistance, Bacterial genetics, Aminoglycosides pharmacology, Aminoglycosides therapeutic use, Microbial Sensitivity Tests, Mycobacterium abscessus, Mycobacterium Infections, Nontuberculous microbiology
- Abstract
Mycobacterium abscessus complex (MABSC) is one of the most resistant bacteria against antimicrobial agents. The number of agents that can be used by oral route, such as macrolides, is limited in antimicrobial therapy. In recent years, rifabutin and clofazimine have gained importance as they can be administered by oral route and have shown synergistic effects with macrolides and aminoglycosides. The aim of this study was to determine the in vitro activity of rifabutin and clofazimine against clinical isolates of MABSC resistant to macrolides. A total of 48 MABSC isolates obtained from respiratory tract and other clinical samples in the Tuberculosis Laboratories of the Faculty of Medicine of Manisa Celal Bayar and Ege Universities were included in the study. Subspecies differentiation and aminoglycoside and macrolide resistance of the isolates were determined by GenoType NTM-DR test. Rifabutin and clofazimine susceptibilities were determined by standard broth microdilution method. Of the MABSC isolates 42 were identified as M.abscessus subsp. abscessus, three as M.abscessus subsp. bolletii and three as M.abscessus subsp. massiliense. None of the isolates exhibited rrs and rrl mutations indicating acquired macrolide resistance and aminoglycoside resistance. However, the erm(41) T28 genotype which is associated with inducible macrolide resistance was detected in 41 (85%) of the strains. All M.abscessus subsp. massiliense isolates were found to be genotypically susceptible to macrolides. The minimum inhibitory concentration (MIC) range values for rifabutin were 0.0625 to 32 µg/mL, while for clofazimine, the range was 0.0625 to 1 µg/mL. Rifabutin MIC values were significantly higher (mean 5.98 µg/mL vs 0.5 µg/mL, p= 0.026) in the isolates with macrolide resistance. There was no correlation between macrolide resistance and clofazimine MIC values (mean 0.25 µg/mL vs. 0.214 µg/mL, p= 0.758). The MIC50 and MIC90 values for rifabutin were 1 and 8 µg/mL, respectively, while for clofazimine they were 0.25 and 0.5 µg/mL. Macrolide resistance was found to be higher in isolates with rifabutin MIC values above the MIC50 value (p= 0.045). In conclusion, the determination of higher rifabutin MIC values in isolates resistant to macrolides suggested that susceptibility testing should be performed before adding rifabutin to the treatment regimen. The low MIC values of clofazimine in all strains indicated that it may be used as a first choice in the combination therapy. However, further studies using a larger number of clinical isolates and applying genotypic and phenotypic susceptibility tests are needed to determine threshold MIC values to assist clinicians in making treatment decisions.
- Published
- 2023
- Full Text
- View/download PDF
43. [Risk of travel associated tuberculosis].
- Author
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Sürücüoğlu S
- Subjects
- Aircraft, Contact Tracing, Humans, Risk Factors, Travel legislation & jurisprudence, Tuberculosis epidemiology, Tuberculosis prevention & control, Tuberculosis, Pulmonary epidemiology, Tuberculosis, Pulmonary prevention & control
- Abstract
Tuberculosis has spread by human movements throughout history. There have been reports indicating tuberculosis transmission on all travel vehicles, including aircrafts, ground vehicles and vessels until today. However, due to the ever increasing of air transportation and air travelling among countries with low and high tuberculosis incidence, transmission risk especially in aircrafts has become an important issue worldwide. But in many of the studies conducted in this regard, transmission of tuberculosis in aircrafts was found very low. The case of active tuberculosis has not yet been reported. This is due to the fact that in modern aircrafts, there are ventilation systems that provide hepa filtered laminar air flow and change the air 15-20 times per hour. The guidelines for the prevention of tuberculosis infection in aircrafts published by the World Health Organization "Tuberculosis and Air Travel, 2008" and European Centre for Disease Prevention and Control "RAGIDA-TB, 2014" confirm each other. According to these guidelines, air travelling of patients with active pulmonary tuberculosis should be prohibited until smears of two consecutive sputum samples become negative for drug susceptible cases, and cultures of two consecutive of sputum samples become negative for multidrug or extensively drug resistant cases. When it is reported that a tuberculosis patient has travelled by the aircraft, it is recommended that the exposed passengers should be investigated for tuberculosis infection if the flight duration equal to or exceeding eight hours including ground delays and the time elapsed between flight and diagnosis of the case is no longer than three months. Contact screening is only recommended for passengers sitting in the same row, two rows ahead and two rows behind the index case. Tuberculin skin test or interferon gamma release assay can be used for investigation. It is very difficult to determine the risk of tuberculosis transmission in ground vehicles like buses, subways and trains. The reason is that it is often not possible to access the information of the passengers travelling in these vehicles. Because the ventilation systems in ground vehicles are not as reliable as in aircrafts and the crowded environment in the ground vehicles, the risk of tuberculosis transmission is theoretically higher. In modelling studies, the transmission risk in the buses was found to be higher than the trains. In the case of regular travelling with an index case such as school bus riders, the risk increases significantly. The increased human population travelling all over the world nowadays has also raised concerns about travel-related tuberculosis risk. However, because of the limited evidence, it may be more efficient to spend time and resources for the other actions in order to prevent tuberculosis. In this review article, the transmission risk of tuberculosis in vehicles has been discussed.
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- 2018
- Full Text
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44. [Multicenter evaluation of the indirect nitrate reductase assay for the rapid detection of multidrug-resistant tuberculosis].
- Author
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Çoban AY, Taştekin B, Uzun M, Kalaycı F, Ceyhan İ, Biçmen C, Albay A, Sığ AK, Özkütük N, Sürücüoğlu S, Özkütük A, Esen N, Albayrak N, Aslantürk A, Sarıbaş Z, and Alp A
- Subjects
- Colorimetry, Drug Resistance, Multiple, Bacterial, Humans, Microbial Sensitivity Tests, Mycobacterium tuberculosis isolation & purification, Mycobacterium tuberculosis metabolism, Nitrates metabolism, Nitrites metabolism, Sensitivity and Specificity, Tuberculosis, Multidrug-Resistant microbiology, Tuberculosis, Multidrug-Resistant prevention & control, Turkey, Antitubercular Agents pharmacology, Isoniazid pharmacology, Mycobacterium tuberculosis drug effects, Nitrate Reductase metabolism, Rifampin pharmacology, Tuberculosis, Multidrug-Resistant diagnosis
- Abstract
Multidrug-resistant tuberculosis (MDR-TB) is defined as resistance to at least isoniazid (INH) and rifampicin (RIF), and it complicates the implementation of tuberculosis control programmes. The rapid detection of MDR-TB is crucial to reduce the transmission of disease. The nitrate reductase assay (NRA) is one of the colorimetric susceptibility test methods for rapid detection of MDR-TB and based on the ability of reduction of nitrate to nitrite by Mycobacterium tuberculosis. The aim of this study was to evaluate the performance of the NRA for the rapid detection of MDR-TB. A total of 237 M.tuberculosis complex (MTC) isolates that were identified by the same method (BD MGIT(TM) TBc Identification Test, USA) from nine different medical centers in Turkey were included in the study. The susceptibility results of the isolates against INH and RIF obtained by reference test (Bactec MGIT(TM) 960, BD, USA) were then compared with NRA. In order to ensure consistency between centers, Löwenstein-Jensen (LJ) medium with antibiotics and without antibiotics (growth control) and Griess reagent solution were prepared in a single center (Ondokuz Mayıs University School of Medicine, Medical Microbiology Department) and sent to all participant centers with the standardized test procedure. After the inoculation of bacteria into the test tubes, the tubes were incubated at 37°C, and after seven days of incubation, 500 μl Griess reagent was added to the LJ medium without antibiotics. If a color change was observed, an equal volume of Griess reagent was added to test LJ media with antibiotics. When a color change was observed in LJ media with antibiotics, it was considered that the isolate was resistant to tested antibiotics. Among 237 MTC isolates, 16 were resistant only to INH and nine were resistant only to RIF; 93 isolates (39.2%) were resistant (MDR) and 119 isolates (50.2%) were susceptible to both of the drugs determined with the reference susceptibility test. In the study, five INH-resistant isolates determined with reference method were found susceptible with NRT and eight INH-susceptible isolates determined with reference method were found resistant with NRT. In contrast, one RIF-resistant isolate determined with reference method was found susceptible with NRT and three RIF-susceptible determined isolates were found resistant with NRT. Accordingly, the concordance rate between the reference method and NRA were estimated as 94.5% for INH and 98.3% for RIF. The sensitivity, specificity, positive and negative predictive values of NRA were detected as 95.4%, 93.7%, 92.8% and 96% for INH, and 99%, 97.8%, 97.1% and 99.2% for RIF, respectively. The results of the 111 isolates were obtained on the seventh day, while the rest of the results were obtained between 10-14 days. In conclusion, the data of this multicenter study showed that NRA is a reliable, relatively inexpensive and practical method to perform for the rapid detection of MDR-TB.
- Published
- 2016
- Full Text
- View/download PDF
45. [Investigation of bacterial etiology with conventional and multiplex PCR methods in adult patients with community-acquired pneumonia].
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Kurutepe S, Ecemiş T, Ozgen A, Biçmen C, Celik P, Aktoğu Özkan S, and Sürücüoğlu S
- Subjects
- Adult, Aged, Aged, 80 and over, Bacteria classification, Bacteria isolation & purification, Community-Acquired Infections microbiology, Female, Fluorescent Antibody Technique methods, Humans, Male, Middle Aged, Nucleic Acid Hybridization, Young Adult, Bronchoalveolar Lavage Fluid microbiology, Multiplex Polymerase Chain Reaction, Pneumonia, Bacterial microbiology, Sputum microbiology
- Abstract
Community-acquired pneumonia (CAP) is still a serious life-threatening disease, in which the etiologic agent cannot be identified in more than 50% of patients despite advanced diagnostic methods. The most commonly used methods in the determination of CAP etiology are culture and serological tests. Since early and accurate therapy reduces the mortality in CAP cases, rapid and reliable diagnostic methods are needed. The aim of this study was to determine the bacterial etiology in adult patients with CAP by implementing multiplex polymerase chain reaction/reverse line blot hybridization (M-PCR/RLBH) assay combined with conventional methods. A total of 128 cases (94 were male; age range: 19-81 years, mean age: 58) who were admitted to our hospital and clinically diagnosed as CAP between November 2008 - November 2010, were included in the study. Respiratory samples (sputum and/or bronchoalveolar lavage) obtained from patients were searched by M-PCR/RLBH method (Gen ID®, Autoimmun Diagnostika GmbH, Germany) in terms of the presence of Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, Mycoplasma pneumoniae, Chlamydia pneumoniae and Legionella pneumophila nucleic acids. The samples were simultaneously inoculated onto 5% sheep blood agar, chocolate agar, haemophilus isolation agar, buffered charcoal yeast extract-selective agar and EMB agar media for cultivation. Serum samples obtained from the cases were tested for IgM and IgG antibodies against C.pneumoniae by microimmunofluorescence (Focus Diagnostic, USA) and against L.pneumophila and M.pneumoniae by indirect immunofluorescence (Euroimmun, Germany) methods. The bacterial etiology was identified in 59 (46.1%) of 128 patients with CAP and a total of 73 pathogens were detected. The leading organism was S.pneumoniae (n= 32, 25%), followed by H.influenzae and M.pneumoniae (n= 9, 7%), gram-negative bacilli (n= 10, 7.8%), M.catarrhalis (n= 6, 4.7%), C.pneumoniae (n= 4, 3.2%), L.pneumophila (n= 2, 1.6%) and Staphylococcus aureus (n= 1, 1.4%). Infection with atypical pathogens were detected in 15 (11.7%), and mixed infections in 14 (10.9%) patients. The detection rate of microorganisms (S.pneumoniae, H.influenzae, M.catarrhalis, C.pneumoniae, L.pneumophilia, M.pneumoniae) searched by M-PCR/RLBH method was 41.4% (53/128), while those microorganisms were detected in 23.4% (30/128) of the patients by conventional methods, representing a significant difference (p< 0.05). It was concluded that M-PCR/RLBH method supplemented the determination of bacterial etiology in CAP cases by increasing the rate of detection from 23.4% to 41.4%. The results indicated that empirical treatment of CAP should primarily include antibiotics against S.pneumoniae, M.pneumoniae and H.influenzae in our region.
- Published
- 2012
46. [Pyrazinamide monoresistant Mycobacterium tuberculosis in Manisa region, Turkey].
- Author
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Ozkütük N, Ecemiş T, and Sürücüoğlu S
- Subjects
- Drug Resistance, Bacterial, Humans, Microbial Sensitivity Tests economics, Turkey, Antitubercular Agents pharmacology, Mycobacterium tuberculosis drug effects, Pyrazinamide pharmacology
- Abstract
Pyrazinamide (PZA) is a primary antituberculous drug. BACTEC 460TB is the recommended reference method for the detection of PZA resistance in Mycobacterium tuberculosis. This method is more expensive than the conventional susceptibility methods and therefore, it is recommended that each laboratory should establish their own protocol for the inclusion of PZA in the panel of primary drugs tested. One of the most important factors that help this decision is the prevalence of PZA resistance, particularly PZA monoresistance in the related community. The aim of the present study was to determine the extent of PZA monoresistance in M. tuberculosis complex (MTBC) isolates in our region. In this study, PZA susceptibility testing of 109 MTBC strains (susceptible to isoniazid, rifampicin, ethambutol and streptomycin) isolated from Manisa province in the Aegean region of Turkey was performed by using the BACTEC 460TB radiometric system (Becton Dickinson, MD). Two (1.8%) of the 109 isolates which were susceptible to all primary drugs revealed monoresistance against PZA. One of the PZA-monoresistant isolates has been identified as M. bovis and the other as M. tuberculosis by molecular method (Genotype MTBC, Hain Lifescience, Germany). The results of our study indicated that since the rate of PZA monoresistance was low, susceptibility testing of a panel of primary drugs without PZA may be an economical alternative in our region.
- Published
- 2008
47. [Comparison of interferon-gamma whole blood assay with tuberculin skin test for the diagnosis of tuberculosis infection in tuberculosis contacts].
- Author
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Oztürk N, Sürücüoğlu S, Ozkütük N, Gazi H, Akçali S, Köroğlu G, and Ciçek C
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Antigens, Bacterial immunology, Bacterial Proteins immunology, Cross Reactions, False Negative Reactions, False Positive Reactions, Female, Humans, Male, Middle Aged, Risk Factors, Interferon-gamma blood, Mycobacterium tuberculosis immunology, Tuberculin Test standards, Tuberculosis diagnosis
- Abstract
Tuberculin skin test which is used for the detection of latent tuberculosis (TB), has many disadvantages such as false positivities due to cross reactions between environmental mycobacteria and BCG strain, false negativities due to immunosuppression and malpractice, and also difficulties in application and evaluation. Recently a new diagnostic test which measures the production of interferon (IFN)-gamma in whole blood upon stimulation with specific ESAT-6 and CFP-10 antigens of Mycobacterium tuberculosis has been introduced. Since most of the mycobacteria other than tuberculosis and BCG strain do not contain these antigens, the detection of IFN-gamma levels indicates the specific T-cell response against M. tuberculosis. The aim of the study was to compare the tuberculin skin test and whole blood IFN-gamma assay (QuantiFERON-TB Gold, Cellestis Ltd, Carnegie, Victoria, Australia) for the identification of latent TB infection in the contacts with active TB patients. The tests results were evaluated by using Kappa (K) analysis, and K coefficients of < 0.4, 0.4-0.75 and > 0.75 were accepted as poor, moderate and excellent agreements, respectively. A total of 233 subjects from three risk groups were included to the study. Group 1 included the household members (n = 133) who had contact with smear positive index cases, Group 2 included the subjects from community (n = 46) who had contact with smear positive index cases, and Group 3 included health care workers (n = 74) who had contact with TB patients or their specimens. The positivity rates of tuberculin skin test and IFN-gamma assay in the cases were found as 37% and 42%, respectively. There were no significant differences among the three patient groups with regard to the results of the tuberculin skin test (p > 0.05). However, the positive result of the IFN-gamma assay in Group 1 was found statistically higher than the other groups (51.3%, p = 0.013). A poor agreement between the two tests was detected in the results taken from 233 subjects (65.7%, K = 0.28), while agreement was moderate in unvaccinated group (72.7%, K = 0.44). Evaluation of agreement rates of the tests according to the risk groups yielded 64.6% (K = 0.3) for Group 1, 71.7% (K = 0.32) for Group 2, and 63.5% (K = 0.21) for Group 3, which all coefficients showed poor agreement. Although IFN-gamma blood assay has many advantages such as objective and quantitative results, no interference with vaccination due to the use of specific antigens and being practical, the high cost and the need for well-equipped laboratory are its disadvantages. As a result it was concluded that, IFN-gamma blood assay has limited value for the detection of latent TB infection in our country, since the prevalence of TB infection and BCG vaccination rates are high in Turkey.
- Published
- 2007
48. Antimicrobial susceptibility of bacterial pathogens in the oropharynx of healthy school children in Turkey.
- Author
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Gazi H, Kurutepe S, Sürücüoğlu S, Teker A, and Ozbakkaloglŭ B
- Subjects
- Adolescent, Bacterial Infections epidemiology, Bacterial Infections microbiology, Child, Drug Resistance, Bacterial, Humans, Random Allocation, Respiratory Tract Infections epidemiology, Respiratory Tract Infections microbiology, Turkey epidemiology, Anti-Bacterial Agents therapeutic use, Bacteria drug effects, Bacterial Infections drug therapy, Microbial Sensitivity Tests, Oropharynx microbiology, Respiratory Tract Infections drug therapy
- Abstract
Background & Objectives: Information on oropharyngeal carriage rates of Streptococcus pneumoniae, Haemophilus influenzae, Streptococcus pyogenes and Moraxella catarrhalis and their resistance pattern in healthy school children in Turkey is lacking. The present study was undertaken to determine the carriage rates and antimicrobial resistance of these bacterial pathogens in such children aged 6-14 yr in Manisa, Turkey., Methods: A total of 1022 children were included from nine schools selected randomly from 32 schools. Throat swabs were cultured for bacteria which were identified using standard microbiological methods. Antimicrobial susceptibility was determined as per National Committee for Clinical Laboratory Standards guidelines., Results: Of the 1022 children 240 (23.4%) harboured S. pneumoniae, 162 (15.8%) H. influenzae, 30 (2.9%) S. pyogenes and 82 (8%) M. catarrhalis in their oropharynx. For S. pneumoniae overall 17.9 per cent of the isolates were intermediately and 7 per cent were resistant to penicillin and resistance to erythromycin trimethoprim-sulphamethoxasole (TMP/SMX), and chloramphenicol was 13.7, 9.1 and 1.6 per cent, respectively. Ampicillin resistance observed in 20.9 per cent of H. influenzae isolates was associated with the presence of beta-lactamase, except two isolates interpreted as beta-lactamase-negative ampicillin resistant strains. Resistance of H. influenzae to TMP/SMX, chloramphenicol, azithromycin, cefaclor and amoxicillin/clavulanic acid was 14.2, 2.4, 1.8, 1.2 and 1.2 per cent, respectively. M.catarrhalis isolates produced beta-lactamase in 80.5 per cent of the cases and all were susceptible to macrolides and clavulanic acid/amoxicillin combination; the highest rate of resistance of 17 per cent was for TMP/SMX. One (3.3%) isolate of S. pyogenes was resistant to macrolides tested., Interpretation & Conclusion: Our data shows that upper respiratory tract of about 50 per cent children was colonized with respiratory pathogens. There is a need for surveillance of nasopharyngeal carriage of resistant strains in healthy school children.
- Published
- 2004
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