Search

Differences between various inherent physiological characteristics of lateral roots and of taproots of faba bean plants (Vicia faba L.) have been described in the literature. The question as to whether distinct bacterial communities inhabit each of those root types calls for further investigation. This question was tackled using aeroponically grown plants, i.e., plants that were grown under conditions as homogeneous as possible. Samples of the apical 5 cm of taproots and of lateral roots were compared. Metabolic fingerprints of root bacterial communities were analyzed using the Biolog® assay. Specificity of colonization of the different root types by specific bacterial taxa was examined by the Real-Time Polymerase Chain Reaction (PCR) method. Root bacterial communities produced distinct metabolic fingerprints for each of the two root types. Herbaspirillum spp. were found to be associated with lateral roots but not with taproots both under non-saline and saline (50 mM NaCl) conditions. No significant differences were found in the abundance of bacteria with respect to either root type or salinity. It is concluded that different root types, even within single root systems, differ not only in their physiological traits but also in their bacterial associations. Such associations might have adaptive advantages. [ABSTRACT FROM AUTHOR]

Background: Climate change and anthropogenic activities intensify salinity stress impacting significantly on plant productivity and biodiversity in agroecosystems. There are naturally salt-tolerant plants (halophytes) that can grow and withstand such harsh conditions. Halophytes have evolved along with their associated microbiota to adapt to hypersaline environments. Identifying shared microbial taxa between halophyte species has rarely been investigated. We performed a comprehensive meta-analysis using the published bacterial 16S rRNA gene sequence datasets to untangle the rhizosphere microbiota structure of two halophyte groups and non-halophytes. We aimed for the identification of marker taxa of plants being adapted to a high salinity using three independent approaches., Results: Fifteen studies met the selection criteria for downstream analysis, consisting of 40 plants representing diverse halophyte and non-halophyte species. Microbiome structural analysis revealed distinct compositions for halophytes that face high salt concentrations in their rhizosphere compared to halophytes grown at low salt concentrations or from non-halophytes. For halophytes grown at high salt concentrations, we discovered three bacterial genera that were independently detected through the analysis of the core microbiome, key hub taxa by network analysis and random forest analysis. These genera were Thalassospira, Erythrobacter, and Marinobacter., Conclusions: Our meta-analysis revealed that salinity level is a critical factor in affecting the rhizosphere microbiome assembly of plants. Detecting marker taxa across high-halophytes may help to select Bacteria that might improve the salt tolerance of non-halophytic plants., (© 2024. The Author(s).)

The performance of two bio-inoculants either in single or in combined applications with organic fertilizer was tested to determine their effect on plant growth and yield under normal and unfavorable field conditions such as low pH value and low content of P. Arbuscular Mycorrhiza Fungi (AMF; three species of Glomus ) and the plant-growth-promoting bacterial strain Kosakonia radicincitans DSM16656 were applied to barley in a two-year field experiment with different soil pH levels and available nutrients. Grain yield; contents of P, N, K, and Mg; and soil microbial parameters were measured. Grain yield and the content of nutrients were significantly increased by the applications of mineral fertilizer, organic fertilizer, AMF, and K. radicincitans , and the combined application of organic fertilizer with AMF and with K. radicincitans over the control under normal growth conditions. Under low-pH and low-P conditions, only the combined application of the organic fertilizer with K. radicincitans and organic fertilizer with AMF could increase the grain yield and content of nutrients of barley over the control.

The surface-supported silver nanoparticles have been studied and applied in various applications. Many unique nanostructures have been introduced into this field to improve the functionalities of the surfaces depending on application purposes. We created featured silver nano-array surfaces by utilizing the solvent-mediated phase transition on the surface grafted with poly (acrylic) acids polymer chains and taking advantage of the low temperature of argon gas discharged plasma as a reducing agent. The applied solvents and grafted polymer chain densities affected the phase transition and thus determined the outcome of surface nano-array patterns. However, the total loaded silver ions on the surface affected silver nano-array structures at the sub-micron levels. The featured silver patterned surfaces made in the optimal conditions present a favorable surface-enhanced Raman spectroscopy enhancement as well as recyclability for detection re-usage. This novel method prepares tunable silver nanopatterned surfaces and provides a new approach to various potential applications., (© 2022 IOP Publishing Ltd.)

Recent studies have reported that the peroxisome proliferator-activated receptor gamma (PPARγ) pathway is activated in approximately 40% of patients with muscle-invasive bladder cancer. This led us to investigate pharmacological repression of PPARγ as a possible intervention strategy. Here, we characterize PPARγ antagonists and inverse agonists and find that the former behave as silent ligands, whereas inverse agonists (T0070907 and SR10221) repress downstream PPARγ target genes leading to growth inhibition in bladder cancer cell lines. To understand the mechanism, we determined the ternary crystal structure of PPARγ bound to T0070907 and the corepressor (co-R) peptide NCOR1. The structure shows that the AF-2 helix 12 (H12) rearranges to bind inside the ligand-binding domain, where it forms stabilizing interactions with the compound. This dramatic movement in H12 unveils a large interface for co-R binding. In contrast, the crystal structure of PPARγ bound to a SR10221 analog shows more subtle structural differences, where the compound binds and pushes H12 away from the ligand-binding domain to allow co-R binding. Interestingly, we found that both classes of compound promote recruitment of co-R proteins in biochemical assays but with distinct conformational changes in H12. We validate our structural models using both site-directed mutagenesis and chemical probes. Our findings offer new mechanistic insights into pharmacological modulation of PPARγ signaling., Competing Interests: Conflict of interest The main authors are employees of H3 Biomedicine. The authors declare that they have no conflicts of interest with the contents of this article., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)

Soybean [ Glycine max (L.) Merrill] cultivation is important for its dual role as rich source of dietary protein and soil fertility enhancer, but production is constrained by soil nutrient deficiencies. This is often resolved using chemical fertilizers that exert deleterious effects on the environment when applied in excess. This field study was conducted at Nkolbisson-Yaoundé in the agro-ecological zone V of Cameroon to assess the performance of soybean when inoculated with plant growth-promoting bacteria (PGPB) and arbuscular mycorrhiza fungi (AMF), with or without NPK fertilizer addition. Ten treatments (Control, PGPB, AMF, PGPB+AMF, PGPB+N, PGPB+PK, PGPB+N+PK, PGPB+AMF+N, PGPB+AMF+PK, and PGPB+AMF+N+PK) were established in a randomized complete block design with three replicates. Mycorrhizal colonization was only observed in AMF-inoculated soybean roots. In comparison to control, sole inoculation of PGPB and AMF increased the number of root nodules by 67.2% and 57%, respectively. Co-application of PGPB and AMF increased the number of root nodules by 68.4%, while the addition of NPK fertilizers significantly increased the number of root nodules by 66.9-68.6% compared to control. Acid phosphatase activity in soybean rhizosphere ranged from 46.1 to 85.1 mg h -1 kg -1 and differed significantly across treatments ( p < 0.001). When compared to control, PGPB or AMF or their co-inoculation, and the addition of NPK fertilizers increased the acid phosphatase activity by 45.8%, 27%, 37.6%, and 26.2-37.2%, respectively. Sole inoculation of PGPB or AMF and their integration with NPK fertilizer increased soybean yield and grain contents (e.g., carbohydrate, protein, zinc, and iron) compared to the control ( p < 0.001). Soil phosphorus correlated significantly ( p < 0.05) with soybean grain protein ( r = 0.46) and carbohydrate ( r = 0.41) contents. The effective root nodules correlated significantly ( p < 0.001) with acid phosphatase ( r = 0.67) and soybean yield ( r = 0.66). Acid phosphatase correlated significantly ( p < 0.001) with soybean grain yield ( r = 0.63) and carbohydrate ( r = 0.61) content. Effective root nodules correlated significantly with carbohydrate ( r = 0.87, p < 0.001), protein ( r = 0.46, p < 0.01), zinc ( r = 0.59, p < 0.001), and iron ( r = 0.77, p < 0.01) contents in soybean grains. Overall, these findings indicate strong relationships between farm management practices, microbial activities in the rhizosphere, and soybean performance., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Ngosong, Tatah, Olougou, Suh, Nkongho, Ngone, Achiri, Tchakounté and Ruppel.)